Query 011394
Match_columns 487
No_of_seqs 418 out of 3730
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 00:52:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 3E-128 7E-133 934.9 45.5 469 7-482 3-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 3E-121 6E-126 871.6 41.5 477 6-487 5-482 (487)
3 PTZ00142 6-phosphogluconate de 100.0 1E-113 2E-118 894.7 51.2 469 7-479 1-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 6E-113 1E-117 889.1 52.9 483 2-486 1-486 (493)
5 PRK09287 6-phosphogluconate de 100.0 1E-111 2E-116 876.6 49.8 456 18-481 1-458 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 1E-110 3E-115 871.7 51.4 464 9-480 1-467 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 1E-84 2.3E-89 625.4 28.4 291 186-479 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 9.9E-61 2.1E-65 435.9 25.3 298 8-468 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 2.4E-54 5.2E-59 430.0 35.0 295 8-467 1-297 (298)
10 PRK09599 6-phosphogluconate de 100.0 1.9E-47 4E-52 381.3 35.6 299 8-468 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 8.7E-48 1.9E-52 372.0 28.3 260 8-296 1-265 (286)
12 PRK12490 6-phosphogluconate de 100.0 5.4E-45 1.2E-49 363.1 35.5 207 8-225 1-208 (299)
13 KOG0409 Predicted dehydrogenas 100.0 1.9E-44 4.2E-49 341.2 25.8 262 6-296 34-300 (327)
14 PRK15059 tartronate semialdehy 100.0 4.2E-41 9.2E-46 333.2 27.8 261 8-298 1-265 (292)
15 PRK15461 NADH-dependent gamma- 100.0 4.4E-40 9.6E-45 327.2 28.7 264 7-299 1-269 (296)
16 PLN02858 fructose-bisphosphate 100.0 1.5E-38 3.3E-43 366.7 40.8 261 7-296 4-271 (1378)
17 TIGR01692 HIBADH 3-hydroxyisob 100.0 1.2E-38 2.6E-43 316.1 27.9 259 12-299 1-270 (288)
18 PRK11559 garR tartronate semia 100.0 9.3E-37 2E-41 304.0 28.8 264 7-299 2-269 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 1.3E-36 2.8E-41 302.2 28.7 262 9-299 1-266 (291)
20 PLN02858 fructose-bisphosphate 100.0 3.5E-36 7.6E-41 347.2 29.2 269 3-300 320-595 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 5.8E-32 1.2E-36 245.7 14.1 153 7-169 1-156 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 1.6E-28 3.4E-33 255.4 23.6 250 8-291 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 4.5E-25 9.8E-30 228.9 26.2 206 7-226 3-247 (415)
24 PRK15182 Vi polysaccharide bio 99.9 5.8E-25 1.3E-29 228.0 25.1 251 4-291 3-286 (425)
25 PRK15057 UDP-glucose 6-dehydro 99.9 1.5E-24 3.3E-29 222.3 24.7 244 8-291 1-276 (388)
26 PRK14618 NAD(P)H-dependent gly 99.9 1.1E-24 2.4E-29 220.2 15.9 289 6-311 3-321 (328)
27 PRK00094 gpsA NAD(P)H-dependen 99.9 3.5E-24 7.6E-29 216.2 18.2 282 7-309 1-321 (325)
28 PRK06129 3-hydroxyacyl-CoA deh 99.9 2.6E-22 5.7E-27 200.9 20.8 251 7-292 2-273 (308)
29 PF00393 6PGD: 6-phosphoglucon 99.9 7.1E-24 1.5E-28 204.6 8.1 118 327-449 1-120 (291)
30 PRK14619 NAD(P)H-dependent gly 99.9 3.9E-22 8.6E-27 199.7 15.7 260 7-312 4-300 (308)
31 COG0362 Gnd 6-phosphogluconate 99.9 8.8E-23 1.9E-27 199.7 5.4 122 323-449 175-299 (473)
32 COG1004 Ugd Predicted UDP-gluc 99.9 2.3E-19 5E-24 177.8 25.6 254 8-292 1-288 (414)
33 PRK12557 H(2)-dependent methyl 99.9 6.8E-20 1.5E-24 184.5 22.1 197 8-226 1-236 (342)
34 PLN02353 probable UDP-glucose 99.9 2.9E-19 6.4E-24 187.0 27.5 256 7-291 1-299 (473)
35 KOG2653 6-phosphogluconate deh 99.8 1.4E-21 2.9E-26 188.3 6.4 122 323-449 179-302 (487)
36 COG0677 WecC UDP-N-acetyl-D-ma 99.8 4.3E-19 9.4E-24 175.0 21.4 205 8-226 10-250 (436)
37 PLN02688 pyrroline-5-carboxyla 99.8 2.8E-18 6.1E-23 168.4 22.2 235 8-289 1-251 (266)
38 PRK07531 bifunctional 3-hydrox 99.8 9.1E-19 2E-23 185.9 19.3 194 7-227 4-218 (495)
39 PRK09260 3-hydroxybutyryl-CoA 99.8 2.3E-18 4.9E-23 171.0 18.9 192 8-226 2-217 (288)
40 PRK07679 pyrroline-5-carboxyla 99.8 5.8E-18 1.3E-22 167.2 18.6 192 8-228 4-208 (279)
41 PRK08268 3-hydroxy-acyl-CoA de 99.8 7.8E-18 1.7E-22 178.6 19.5 190 6-227 6-223 (507)
42 PRK08229 2-dehydropantoate 2-r 99.8 2E-17 4.4E-22 168.1 21.1 261 7-291 2-309 (341)
43 COG1023 Gnd Predicted 6-phosph 99.8 7.7E-19 1.7E-23 161.6 7.6 198 64-301 77-276 (300)
44 COG0240 GpsA Glycerol-3-phosph 99.8 5.7E-18 1.2E-22 165.9 14.0 293 7-311 1-322 (329)
45 PRK07417 arogenate dehydrogena 99.8 2.1E-17 4.5E-22 163.3 16.1 176 8-204 1-189 (279)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 2.5E-17 5.5E-22 174.2 17.6 191 6-227 4-221 (503)
47 PRK08507 prephenate dehydrogen 99.7 1.4E-16 3E-21 157.2 20.3 190 8-225 1-205 (275)
48 PRK07819 3-hydroxybutyryl-CoA 99.7 2.2E-16 4.8E-21 156.2 19.5 195 7-226 5-222 (286)
49 PRK12439 NAD(P)H-dependent gly 99.7 1.2E-16 2.6E-21 162.1 16.0 300 1-314 1-331 (341)
50 PRK06130 3-hydroxybutyryl-CoA 99.7 5.4E-16 1.2E-20 155.7 19.7 195 7-227 4-217 (311)
51 PRK07066 3-hydroxybutyryl-CoA 99.7 6.4E-16 1.4E-20 154.2 19.6 198 2-227 2-221 (321)
52 PRK07530 3-hydroxybutyryl-CoA 99.7 1.3E-15 2.7E-20 151.6 19.0 190 7-226 4-219 (292)
53 PLN02545 3-hydroxybutyryl-CoA 99.7 1.2E-15 2.5E-20 152.1 17.8 194 7-226 4-219 (295)
54 PRK08655 prephenate dehydrogen 99.7 3.4E-15 7.4E-20 156.0 21.3 194 8-224 1-200 (437)
55 PRK11199 tyrA bifunctional cho 99.7 1.8E-15 3.8E-20 155.2 18.6 179 6-224 97-279 (374)
56 PRK06035 3-hydroxyacyl-CoA deh 99.7 2.2E-15 4.9E-20 149.8 18.5 193 7-226 3-221 (291)
57 PRK07680 late competence prote 99.7 8E-15 1.7E-19 144.5 21.9 195 8-228 1-204 (273)
58 PRK06476 pyrroline-5-carboxyla 99.7 1.8E-14 3.8E-19 140.8 23.7 239 8-288 1-243 (258)
59 PTZ00142 6-phosphogluconate de 99.7 1.2E-16 2.7E-21 167.2 8.8 118 324-449 175-298 (470)
60 PTZ00345 glycerol-3-phosphate 99.7 1.5E-15 3.3E-20 153.9 15.2 294 6-312 10-355 (365)
61 PRK12491 pyrroline-5-carboxyla 99.6 1.8E-14 4E-19 141.4 21.6 195 7-227 2-205 (272)
62 PRK12921 2-dehydropantoate 2-r 99.6 2.4E-14 5.1E-19 143.3 20.8 255 8-291 1-293 (305)
63 TIGR01724 hmd_rel H2-forming N 99.6 2.7E-14 5.9E-19 138.9 20.2 192 8-220 1-231 (341)
64 TIGR03376 glycerol3P_DH glycer 99.6 2.9E-15 6.2E-20 150.9 13.8 271 9-291 1-325 (342)
65 PRK08293 3-hydroxybutyryl-CoA 99.6 3.2E-14 7E-19 141.2 21.2 196 7-226 3-221 (287)
66 TIGR00873 gnd 6-phosphoglucona 99.6 4.6E-16 1E-20 162.9 8.3 118 324-447 172-292 (467)
67 PRK11880 pyrroline-5-carboxyla 99.6 1E-13 2.3E-18 136.1 24.5 241 7-289 2-252 (267)
68 PRK05808 3-hydroxybutyryl-CoA 99.6 2.1E-14 4.5E-19 142.2 18.9 191 7-226 3-218 (282)
69 PRK09287 6-phosphogluconate de 99.6 7E-16 1.5E-20 160.9 8.3 117 324-448 164-286 (459)
70 PRK14620 NAD(P)H-dependent gly 99.6 6.6E-14 1.4E-18 141.5 20.8 261 8-290 1-306 (326)
71 PRK07502 cyclohexadienyl dehyd 99.6 3.4E-14 7.3E-19 142.4 18.5 167 4-187 3-184 (307)
72 PRK06522 2-dehydropantoate 2-r 99.6 1.1E-13 2.4E-18 138.3 20.7 254 8-290 1-289 (304)
73 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 2.7E-14 5.9E-19 132.0 13.7 149 8-161 1-184 (185)
74 COG0345 ProC Pyrroline-5-carbo 99.6 1.3E-13 2.8E-18 133.0 18.8 193 7-227 1-202 (266)
75 PRK06545 prephenate dehydrogen 99.5 2.5E-13 5.5E-18 138.8 19.5 194 8-224 1-208 (359)
76 PRK08269 3-hydroxybutyryl-CoA 99.5 3.5E-13 7.6E-18 134.9 16.1 178 18-227 1-216 (314)
77 PRK06928 pyrroline-5-carboxyla 99.5 2.2E-12 4.7E-17 127.3 21.0 196 7-227 1-206 (277)
78 PRK06249 2-dehydropantoate 2-r 99.5 1.5E-12 3.3E-17 130.7 20.3 255 5-291 3-301 (313)
79 PRK07634 pyrroline-5-carboxyla 99.5 2E-12 4.3E-17 125.3 19.6 192 8-227 5-207 (245)
80 PLN02256 arogenate dehydrogena 99.5 5.8E-12 1.3E-16 125.4 21.4 159 5-182 34-204 (304)
81 COG0287 TyrA Prephenate dehydr 99.5 3.2E-12 6.9E-17 125.1 18.7 156 6-169 2-165 (279)
82 PF03807 F420_oxidored: NADP o 99.4 6.6E-13 1.4E-17 109.4 10.2 90 9-109 1-95 (96)
83 TIGR01915 npdG NADPH-dependent 99.4 2.3E-12 4.9E-17 122.8 15.2 166 8-186 1-193 (219)
84 PLN02712 arogenate dehydrogena 99.4 5.2E-12 1.1E-16 138.0 19.3 157 6-182 368-537 (667)
85 COG1250 FadB 3-hydroxyacyl-CoA 99.4 4.2E-12 9E-17 124.9 16.6 193 7-227 3-219 (307)
86 COG2085 Predicted dinucleotide 99.4 2.6E-12 5.6E-17 118.3 12.6 162 7-187 1-185 (211)
87 PTZ00431 pyrroline carboxylate 99.4 2.8E-11 6E-16 118.4 19.5 186 8-227 4-198 (260)
88 PF14833 NAD_binding_11: NAD-b 99.4 1.5E-12 3.3E-17 112.3 9.1 104 184-299 1-105 (122)
89 PRK05479 ketol-acid reductoiso 99.4 3.1E-11 6.8E-16 120.4 18.9 194 7-222 17-224 (330)
90 PLN02350 phosphogluconate dehy 99.4 2.2E-12 4.7E-17 135.5 11.0 118 324-449 181-304 (493)
91 PRK05708 2-dehydropantoate 2-r 99.4 1.6E-11 3.4E-16 122.9 16.6 255 7-291 2-289 (305)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 3.8E-12 8.2E-17 114.8 10.5 99 9-111 1-106 (157)
93 PRK11730 fadB multifunctional 99.4 1.8E-11 3.9E-16 135.4 17.6 192 6-227 312-528 (715)
94 TIGR02437 FadB fatty oxidation 99.4 2.2E-11 4.8E-16 134.5 18.0 192 6-227 312-528 (714)
95 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.6E-11 3.4E-16 135.9 16.9 193 6-228 334-551 (737)
96 PRK14806 bifunctional cyclohex 99.3 4.4E-11 9.6E-16 133.8 19.5 153 8-169 4-171 (735)
97 TIGR02440 FadJ fatty oxidation 99.3 3.6E-11 7.8E-16 132.7 17.9 192 6-227 303-520 (699)
98 PF02737 3HCDH_N: 3-hydroxyacy 99.3 6E-12 1.3E-16 116.0 9.6 147 9-169 1-173 (180)
99 PF10727 Rossmann-like: Rossma 99.3 2E-12 4.4E-17 111.4 5.6 111 6-129 9-122 (127)
100 PRK08818 prephenate dehydrogen 99.3 7.7E-11 1.7E-15 119.7 17.9 137 7-169 4-149 (370)
101 PLN02712 arogenate dehydrogena 99.3 1.2E-10 2.6E-15 127.4 20.5 153 6-170 51-215 (667)
102 PRK11154 fadJ multifunctional 99.3 5.7E-11 1.2E-15 131.4 17.7 193 6-227 308-525 (708)
103 COG1893 ApbA Ketopantoate redu 99.3 2E-10 4.4E-15 114.5 19.6 257 8-295 1-295 (307)
104 TIGR00465 ilvC ketol-acid redu 99.2 6.6E-10 1.4E-14 111.0 16.1 147 8-169 4-161 (314)
105 KOG2666 UDP-glucose/GDP-mannos 99.1 7.5E-09 1.6E-13 99.5 20.0 246 7-284 1-290 (481)
106 PRK07574 formate dehydrogenase 99.1 1.2E-09 2.6E-14 111.8 15.7 111 8-128 193-304 (385)
107 KOG2304 3-hydroxyacyl-CoA dehy 99.1 4.7E-10 1E-14 103.1 11.0 195 7-227 11-233 (298)
108 PRK12480 D-lactate dehydrogena 99.1 8.3E-10 1.8E-14 111.4 13.7 114 8-135 147-261 (330)
109 PLN03139 formate dehydrogenase 99.1 2E-09 4.2E-14 110.2 15.9 112 8-129 200-312 (386)
110 TIGR00745 apbA_panE 2-dehydrop 99.1 1.5E-08 3.3E-13 100.6 19.9 243 18-290 2-282 (293)
111 cd01065 NAD_bind_Shikimate_DH 99.0 1.1E-09 2.3E-14 98.3 9.2 118 7-132 19-138 (155)
112 PRK13243 glyoxylate reductase; 99.0 1.9E-09 4.1E-14 109.0 12.0 109 8-128 151-260 (333)
113 cd01075 NAD_bind_Leu_Phe_Val_D 99.0 9E-09 2E-13 96.5 14.2 127 8-152 29-157 (200)
114 PRK08605 D-lactate dehydrogena 99.0 4E-09 8.6E-14 106.7 12.6 108 8-128 147-256 (332)
115 PF02153 PDH: Prephenate dehyd 99.0 1.4E-08 3E-13 99.2 15.9 138 22-170 1-153 (258)
116 PRK06436 glycerate dehydrogena 99.0 3E-09 6.6E-14 105.8 11.3 113 8-135 123-236 (303)
117 PRK15469 ghrA bifunctional gly 99.0 3.4E-09 7.3E-14 106.1 10.8 111 8-130 137-248 (312)
118 PF02826 2-Hacid_dh_C: D-isome 98.9 4.4E-09 9.6E-14 96.8 10.2 110 8-128 37-147 (178)
119 PRK13403 ketol-acid reductoiso 98.9 5.6E-09 1.2E-13 102.9 10.5 89 8-108 17-106 (335)
120 PRK13302 putative L-aspartate 98.9 1.4E-08 2.9E-13 99.8 13.0 124 3-138 2-129 (271)
121 KOG2305 3-hydroxyacyl-CoA dehy 98.9 2.8E-08 6E-13 91.6 12.4 195 8-226 4-221 (313)
122 COG4007 Predicted dehydrogenas 98.9 1.8E-07 3.8E-12 87.8 17.3 200 7-223 1-235 (340)
123 TIGR00112 proC pyrroline-5-car 98.8 6.9E-07 1.5E-11 86.6 21.5 171 30-227 9-185 (245)
124 KOG2380 Prephenate dehydrogena 98.8 6E-08 1.3E-12 94.3 13.3 151 8-170 53-215 (480)
125 TIGR01327 PGDH D-3-phosphoglyc 98.8 2.7E-08 5.9E-13 106.6 11.7 111 8-129 139-250 (525)
126 PLN02928 oxidoreductase family 98.8 7.3E-08 1.6E-12 98.0 13.8 114 8-128 160-282 (347)
127 PRK13581 D-3-phosphoglycerate 98.8 3.8E-08 8.3E-13 105.5 11.6 108 8-127 141-249 (526)
128 PF07991 IlvN: Acetohydroxy ac 98.8 3.1E-08 6.7E-13 87.8 8.9 89 8-108 5-95 (165)
129 PRK00257 erythronate-4-phospha 98.8 3.4E-08 7.5E-13 101.0 10.1 113 8-135 117-234 (381)
130 COG0111 SerA Phosphoglycerate 98.7 5.9E-08 1.3E-12 97.3 11.3 109 8-127 143-252 (324)
131 PRK13304 L-aspartate dehydroge 98.7 1.4E-07 3E-12 92.5 12.8 119 7-138 1-126 (265)
132 PRK11790 D-3-phosphoglycerate 98.7 9.3E-08 2E-12 99.3 11.4 109 8-130 152-261 (409)
133 PRK08410 2-hydroxyacid dehydro 98.7 1.4E-07 3E-12 94.6 12.3 106 8-128 146-252 (311)
134 COG1052 LdhA Lactate dehydroge 98.7 1.7E-07 3.7E-12 94.0 12.4 112 8-131 147-259 (324)
135 PRK06141 ornithine cyclodeamin 98.7 6.7E-08 1.4E-12 97.1 9.4 118 5-132 123-242 (314)
136 TIGR02853 spore_dpaA dipicolin 98.7 2.9E-07 6.4E-12 91.1 13.4 111 8-133 152-262 (287)
137 PRK15409 bifunctional glyoxyla 98.7 3.9E-07 8.4E-12 91.7 14.4 108 8-127 146-255 (323)
138 PRK06932 glycerate dehydrogena 98.6 3.3E-07 7.2E-12 91.9 12.7 105 8-128 148-253 (314)
139 PRK06487 glycerate dehydrogena 98.6 4.5E-07 9.8E-12 91.1 13.7 104 8-128 149-253 (317)
140 PRK15438 erythronate-4-phospha 98.6 1.4E-07 3.1E-12 96.2 10.0 105 8-127 117-226 (378)
141 PRK14194 bifunctional 5,10-met 98.6 1.3E-07 2.8E-12 93.0 8.1 74 8-111 160-234 (301)
142 PLN02306 hydroxypyruvate reduc 98.5 1.2E-06 2.6E-11 90.1 13.0 126 8-136 166-300 (386)
143 COG1748 LYS9 Saccharopine dehy 98.5 2E-06 4.3E-11 87.6 13.8 124 7-139 1-130 (389)
144 PF02558 ApbA: Ketopantoate re 98.5 6E-07 1.3E-11 80.1 8.7 97 10-111 1-104 (151)
145 PF01408 GFO_IDH_MocA: Oxidore 98.4 4.1E-06 8.9E-11 71.5 12.7 111 8-129 1-116 (120)
146 KOG0069 Glyoxylate/hydroxypyru 98.4 1.4E-06 3.1E-11 86.6 10.8 106 8-124 163-269 (336)
147 PRK08306 dipicolinate synthase 98.4 1.6E-06 3.4E-11 86.4 10.7 112 7-133 152-263 (296)
148 TIGR00507 aroE shikimate 5-deh 98.4 1.2E-06 2.6E-11 86.2 9.2 118 7-132 117-236 (270)
149 KOG3124 Pyrroline-5-carboxylat 98.4 3.8E-06 8.2E-11 79.5 11.7 192 8-226 1-202 (267)
150 cd05213 NAD_bind_Glutamyl_tRNA 98.3 2.4E-06 5.2E-11 85.8 10.3 95 7-109 178-274 (311)
151 TIGR02371 ala_DH_arch alanine 98.3 2.1E-06 4.6E-11 86.6 9.7 101 4-113 125-227 (325)
152 PRK14188 bifunctional 5,10-met 98.3 1.8E-06 3.9E-11 85.1 8.3 73 8-111 159-233 (296)
153 PF01488 Shikimate_DH: Shikima 98.3 1.9E-06 4E-11 75.6 7.4 97 7-109 12-110 (135)
154 PRK06444 prephenate dehydrogen 98.2 5.5E-05 1.2E-09 70.5 16.2 108 8-169 1-115 (197)
155 PRK06223 malate dehydrogenase; 98.2 6.6E-06 1.4E-10 82.5 10.6 100 7-111 2-122 (307)
156 PRK14179 bifunctional 5,10-met 98.2 4.4E-06 9.6E-11 81.7 7.5 74 8-111 159-233 (284)
157 PRK06823 ornithine cyclodeamin 98.1 1.8E-05 3.8E-10 79.5 11.0 119 4-132 125-246 (315)
158 PRK06407 ornithine cyclodeamin 98.1 1.6E-05 3.4E-10 79.4 10.3 119 6-132 116-236 (301)
159 PRK08618 ornithine cyclodeamin 98.1 1.8E-05 4E-10 79.9 10.9 119 5-132 125-245 (325)
160 PRK07340 ornithine cyclodeamin 98.1 2.1E-05 4.6E-10 78.6 11.1 116 5-132 123-240 (304)
161 TIGR01763 MalateDH_bact malate 98.1 2.5E-05 5.4E-10 78.1 10.8 99 8-111 2-121 (305)
162 COG0059 IlvC Ketol-acid reduct 98.1 1.5E-05 3.2E-10 77.2 8.6 88 8-107 19-108 (338)
163 COG1712 Predicted dinucleotide 98.1 5.4E-05 1.2E-09 70.4 11.9 120 8-138 1-125 (255)
164 PF01113 DapB_N: Dihydrodipico 98.1 2.2E-05 4.7E-10 67.8 8.9 114 8-133 1-122 (124)
165 PF00670 AdoHcyase_NAD: S-aden 98.0 2.5E-05 5.4E-10 69.8 9.2 89 9-111 25-113 (162)
166 smart00859 Semialdhyde_dh Semi 98.0 1.5E-05 3.3E-10 68.5 7.6 98 9-111 1-102 (122)
167 PLN00203 glutamyl-tRNA reducta 98.0 2.8E-05 6.1E-10 82.8 10.1 99 7-109 266-370 (519)
168 PTZ00075 Adenosylhomocysteinas 98.0 3.2E-05 6.9E-10 80.7 9.8 89 8-111 255-344 (476)
169 PRK09310 aroDE bifunctional 3- 98.0 3.4E-05 7.3E-10 81.9 10.1 105 7-130 332-436 (477)
170 TIGR02992 ectoine_eutC ectoine 98.0 4E-05 8.6E-10 77.5 10.1 99 6-112 128-228 (326)
171 KOG2711 Glycerol-3-phosphate d 98.0 5.8E-05 1.3E-09 74.2 10.7 100 8-111 22-142 (372)
172 TIGR01921 DAP-DH diaminopimela 98.0 7.7E-05 1.7E-09 74.4 11.8 87 7-109 3-92 (324)
173 COG2423 Predicted ornithine cy 97.9 6.2E-05 1.3E-09 75.4 11.0 121 5-133 128-250 (330)
174 PLN02819 lysine-ketoglutarate 97.9 0.00011 2.3E-09 83.8 14.2 123 6-135 568-706 (1042)
175 COG0569 TrkA K+ transport syst 97.9 9.2E-05 2E-09 70.7 11.5 99 8-110 1-103 (225)
176 TIGR00872 gnd_rel 6-phosphoglu 97.9 3.1E-05 6.8E-10 77.3 8.6 108 185-301 166-275 (298)
177 TIGR01035 hemA glutamyl-tRNA r 97.9 4.4E-05 9.6E-10 79.8 9.7 95 7-108 180-277 (417)
178 PRK05225 ketol-acid reductoiso 97.9 2.1E-05 4.6E-10 80.8 7.1 146 8-169 37-200 (487)
179 TIGR00936 ahcY adenosylhomocys 97.9 0.0001 2.2E-09 76.0 12.1 99 8-121 196-296 (406)
180 PRK08291 ectoine utilization p 97.9 7.4E-05 1.6E-09 75.7 10.8 100 5-112 130-231 (330)
181 PRK13303 L-aspartate dehydroge 97.9 9.5E-05 2.1E-09 72.5 11.1 121 7-139 1-127 (265)
182 TIGR00518 alaDH alanine dehydr 97.9 4.7E-05 1E-09 78.2 9.3 98 8-109 168-268 (370)
183 PRK06046 alanine dehydrogenase 97.9 7.8E-05 1.7E-09 75.4 10.4 101 5-114 127-229 (326)
184 PRK00045 hemA glutamyl-tRNA re 97.9 4.2E-05 9.2E-10 80.1 8.3 96 7-109 182-281 (423)
185 PF02423 OCD_Mu_crystall: Orni 97.8 5.5E-05 1.2E-09 76.0 8.7 103 5-114 126-230 (313)
186 COG0673 MviM Predicted dehydro 97.8 0.00019 4E-09 72.8 12.7 112 6-128 2-120 (342)
187 PRK07589 ornithine cyclodeamin 97.8 0.00012 2.5E-09 74.4 10.9 103 5-114 127-231 (346)
188 PRK00048 dihydrodipicolinate r 97.8 0.00012 2.6E-09 71.4 10.3 111 7-133 1-115 (257)
189 PTZ00082 L-lactate dehydrogena 97.8 0.00017 3.7E-09 72.6 11.5 99 8-111 7-131 (321)
190 TIGR00036 dapB dihydrodipicoli 97.8 0.0002 4.4E-09 70.2 11.5 119 7-133 1-125 (266)
191 cd05292 LDH_2 A subgroup of L- 97.8 0.00012 2.5E-09 73.5 9.8 73 8-84 1-78 (308)
192 PRK00258 aroE shikimate 5-dehy 97.8 7E-05 1.5E-09 74.0 8.1 117 7-130 123-241 (278)
193 PF03435 Saccharop_dh: Sacchar 97.8 0.00027 5.8E-09 73.2 12.6 122 10-139 1-129 (386)
194 PLN02494 adenosylhomocysteinas 97.8 0.00017 3.7E-09 75.1 10.9 89 8-110 255-343 (477)
195 cd05297 GH4_alpha_glucosidase_ 97.8 0.00012 2.7E-09 76.6 10.0 74 8-84 1-85 (423)
196 cd01339 LDH-like_MDH L-lactate 97.8 0.00013 2.9E-09 72.9 9.9 97 10-111 1-118 (300)
197 COG0373 HemA Glutamyl-tRNA red 97.8 0.00016 3.4E-09 74.3 10.4 95 7-109 178-275 (414)
198 PRK12549 shikimate 5-dehydroge 97.7 0.0001 2.2E-09 73.0 8.5 117 7-130 127-247 (284)
199 cd05291 HicDH_like L-2-hydroxy 97.7 0.00026 5.7E-09 70.9 11.5 98 8-110 1-119 (306)
200 PRK05476 S-adenosyl-L-homocyst 97.7 0.00017 3.8E-09 74.8 10.4 90 8-112 213-303 (425)
201 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00022 4.8E-09 66.5 10.2 102 7-111 28-132 (194)
202 TIGR01809 Shik-DH-AROM shikima 97.7 0.00036 7.7E-09 69.1 12.1 119 8-130 126-251 (282)
203 PF00056 Ldh_1_N: lactate/mala 97.7 0.00017 3.7E-09 63.7 8.7 99 8-110 1-120 (141)
204 PF02254 TrkA_N: TrkA-N domain 97.7 0.00053 1.2E-08 58.0 11.2 112 10-131 1-114 (116)
205 PRK13301 putative L-aspartate 97.7 0.00037 8.1E-09 67.3 11.2 118 8-139 3-128 (267)
206 TIGR01761 thiaz-red thiazoliny 97.7 0.00063 1.4E-08 69.0 13.4 110 7-130 3-119 (343)
207 cd01483 E1_enzyme_family Super 97.7 0.00032 7E-09 62.0 10.1 122 9-136 1-124 (143)
208 PTZ00117 malate dehydrogenase; 97.6 0.00042 9.1E-09 69.8 11.5 99 8-111 6-125 (319)
209 PF01118 Semialdhyde_dh: Semia 97.6 0.00014 3E-09 62.5 6.5 95 9-111 1-100 (121)
210 PRK06199 ornithine cyclodeamin 97.6 0.0003 6.5E-09 72.4 9.6 101 4-109 152-260 (379)
211 COG5495 Uncharacterized conser 97.6 0.001 2.2E-08 62.1 11.8 191 6-221 9-207 (289)
212 PRK10669 putative cation:proto 97.6 0.00067 1.4E-08 73.8 12.7 116 8-133 418-535 (558)
213 PRK04148 hypothetical protein; 97.6 0.00061 1.3E-08 59.2 9.9 100 7-113 17-116 (134)
214 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00039 8.4E-09 72.0 10.3 88 8-110 203-291 (413)
215 PF00984 UDPG_MGDP_dh: UDP-glu 97.6 0.00073 1.6E-08 55.4 9.7 88 184-291 2-89 (96)
216 KOG2741 Dimeric dihydrodiol de 97.5 0.0016 3.4E-08 64.7 13.3 122 3-132 2-129 (351)
217 cd05293 LDH_1 A subgroup of L- 97.5 0.00097 2.1E-08 66.9 12.2 101 6-111 2-123 (312)
218 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00034 7.3E-09 63.6 8.0 74 8-111 45-119 (168)
219 PRK00066 ldh L-lactate dehydro 97.5 0.0012 2.5E-08 66.5 12.5 99 7-110 6-124 (315)
220 PRK03562 glutathione-regulated 97.5 0.0014 3E-08 72.1 13.6 117 8-135 401-520 (621)
221 PRK03659 glutathione-regulated 97.5 0.0013 2.9E-08 72.0 13.4 115 8-132 401-517 (601)
222 PRK11579 putative oxidoreducta 97.5 0.0015 3.3E-08 66.6 13.1 110 7-129 4-118 (346)
223 PRK13940 glutamyl-tRNA reducta 97.5 0.00024 5.2E-09 73.9 7.0 74 7-86 181-255 (414)
224 PF13380 CoA_binding_2: CoA bi 97.5 0.00032 6.9E-09 59.8 6.4 104 8-132 1-108 (116)
225 cd00650 LDH_MDH_like NAD-depen 97.4 0.00056 1.2E-08 67.0 8.7 98 10-111 1-122 (263)
226 KOG0068 D-3-phosphoglycerate d 97.4 0.00091 2E-08 65.8 9.8 104 8-124 147-252 (406)
227 cd00300 LDH_like L-lactate deh 97.4 0.0015 3.3E-08 65.2 11.2 96 10-110 1-117 (300)
228 PRK09496 trkA potassium transp 97.3 0.0016 3.5E-08 68.8 11.9 97 8-108 1-100 (453)
229 PRK00436 argC N-acetyl-gamma-g 97.3 0.00068 1.5E-08 69.0 8.4 99 7-112 2-103 (343)
230 cd01076 NAD_bind_1_Glu_DH NAD( 97.3 0.0023 5E-08 61.2 10.8 116 7-132 31-158 (227)
231 PRK15076 alpha-galactosidase; 97.3 0.0011 2.4E-08 69.4 9.2 75 7-84 1-86 (431)
232 PF01262 AlaDh_PNT_C: Alanine 97.3 0.00043 9.3E-09 63.0 5.3 96 7-109 20-140 (168)
233 TIGR01850 argC N-acetyl-gamma- 97.2 0.001 2.2E-08 67.8 8.3 97 8-111 1-102 (346)
234 PRK09496 trkA potassium transp 97.2 0.0045 9.8E-08 65.4 13.6 117 7-133 231-350 (453)
235 PRK06270 homoserine dehydrogen 97.2 0.0029 6.2E-08 64.4 11.4 130 7-137 2-156 (341)
236 TIGR02354 thiF_fam2 thiamine b 97.2 0.0034 7.3E-08 58.9 10.8 33 7-39 21-54 (200)
237 cd05294 LDH-like_MDH_nadp A la 97.2 0.0013 2.9E-08 65.9 8.6 71 8-82 1-81 (309)
238 PRK08300 acetaldehyde dehydrog 97.2 0.0037 7.9E-08 62.0 11.3 95 7-111 4-104 (302)
239 COG0686 Ald Alanine dehydrogen 97.2 0.0016 3.5E-08 63.5 8.5 98 7-108 168-268 (371)
240 PRK10206 putative oxidoreducta 97.2 0.0045 9.7E-08 63.1 12.4 113 7-130 1-119 (344)
241 PLN02602 lactate dehydrogenase 97.2 0.0041 8.9E-08 63.3 11.9 99 8-111 38-157 (350)
242 PRK02318 mannitol-1-phosphate 97.2 0.0018 3.9E-08 67.0 9.4 103 8-111 1-125 (381)
243 PF14833 NAD_binding_11: NAD-b 97.2 0.0042 9.1E-08 53.3 10.3 102 325-442 1-104 (122)
244 PRK14175 bifunctional 5,10-met 97.1 0.0015 3.2E-08 64.3 8.0 73 8-110 159-232 (286)
245 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0041 8.9E-08 59.0 10.8 176 7-226 23-211 (217)
246 cd05311 NAD_bind_2_malic_enz N 97.1 0.0036 7.9E-08 59.8 10.5 106 8-128 26-145 (226)
247 TIGR03215 ac_ald_DH_ac acetald 97.1 0.0026 5.7E-08 62.7 9.5 93 8-111 2-98 (285)
248 TIGR00561 pntA NAD(P) transhyd 97.1 0.002 4.3E-08 68.3 9.0 99 7-110 164-286 (511)
249 PRK14189 bifunctional 5,10-met 97.1 0.0017 3.6E-08 63.8 7.6 74 8-111 159-233 (285)
250 TIGR01723 hmd_TIGR 5,10-methen 97.1 0.016 3.5E-07 55.7 13.8 151 57-220 126-278 (340)
251 PRK04207 glyceraldehyde-3-phos 97.1 0.0038 8.3E-08 63.4 10.4 97 7-110 1-111 (341)
252 cd05191 NAD_bind_amino_acid_DH 97.0 0.0035 7.6E-08 50.2 8.1 63 7-108 23-86 (86)
253 PRK06349 homoserine dehydrogen 97.0 0.0028 6.2E-08 66.4 9.5 120 7-137 3-135 (426)
254 COG2910 Putative NADH-flavin r 97.0 0.0028 6.1E-08 57.4 8.0 72 8-84 1-73 (211)
255 COG0771 MurD UDP-N-acetylmuram 96.9 0.0047 1E-07 64.4 9.9 131 1-138 1-148 (448)
256 cd01337 MDH_glyoxysomal_mitoch 96.9 0.0041 8.8E-08 62.3 8.9 101 8-111 1-120 (310)
257 PF13460 NAD_binding_10: NADH( 96.9 0.0052 1.1E-07 56.1 9.1 68 10-84 1-71 (183)
258 COG0169 AroE Shikimate 5-dehyd 96.9 0.0051 1.1E-07 60.6 9.3 117 8-131 127-247 (283)
259 COG0002 ArgC Acetylglutamate s 96.9 0.0036 7.8E-08 62.4 8.1 100 6-111 1-104 (349)
260 PRK06392 homoserine dehydrogen 96.8 0.0077 1.7E-07 60.7 10.4 128 8-138 1-148 (326)
261 PRK00961 H(2)-dependent methyl 96.8 0.039 8.4E-07 53.1 14.3 148 57-220 128-280 (342)
262 PRK01710 murD UDP-N-acetylmura 96.8 0.01 2.3E-07 62.9 11.9 116 7-130 14-147 (458)
263 PRK10792 bifunctional 5,10-met 96.8 0.0043 9.4E-08 60.9 8.1 74 8-111 160-234 (285)
264 PRK12475 thiamine/molybdopteri 96.8 0.015 3.3E-07 59.0 12.2 124 7-136 24-151 (338)
265 TIGR02356 adenyl_thiF thiazole 96.8 0.019 4.2E-07 53.9 12.1 124 7-136 21-146 (202)
266 PRK09424 pntA NAD(P) transhydr 96.8 0.008 1.7E-07 64.0 10.4 45 7-51 165-209 (509)
267 PRK12548 shikimate 5-dehydroge 96.8 0.0096 2.1E-07 59.2 10.5 120 8-130 127-256 (289)
268 PRK14106 murD UDP-N-acetylmura 96.8 0.025 5.4E-07 59.8 14.1 72 7-82 5-77 (450)
269 PF02882 THF_DHG_CYH_C: Tetrah 96.7 0.0051 1.1E-07 55.3 7.3 75 8-112 37-112 (160)
270 PRK00683 murD UDP-N-acetylmura 96.7 0.015 3.3E-07 60.9 12.1 113 8-130 4-132 (418)
271 PLN00106 malate dehydrogenase 96.7 0.0061 1.3E-07 61.4 8.6 75 6-83 17-96 (323)
272 PRK14027 quinate/shikimate deh 96.7 0.0092 2E-07 59.0 9.7 116 8-130 128-249 (283)
273 PTZ00325 malate dehydrogenase; 96.7 0.0068 1.5E-07 60.9 8.7 75 6-83 7-86 (321)
274 COG0460 ThrA Homoserine dehydr 96.7 0.015 3.3E-07 58.1 11.0 121 7-139 3-146 (333)
275 PRK06718 precorrin-2 dehydroge 96.7 0.019 4E-07 54.0 11.1 78 8-94 11-90 (202)
276 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.0074 1.6E-07 55.2 8.2 122 9-136 1-124 (174)
277 TIGR01772 MDH_euk_gproteo mala 96.7 0.0057 1.2E-07 61.3 7.9 96 9-111 1-119 (312)
278 cd05290 LDH_3 A subgroup of L- 96.7 0.02 4.3E-07 57.3 11.7 70 9-82 1-77 (307)
279 PF00899 ThiF: ThiF family; I 96.6 0.0034 7.3E-08 54.8 5.4 123 8-136 3-127 (135)
280 PLN02968 Probable N-acetyl-gam 96.6 0.0047 1E-07 63.7 7.2 99 6-111 37-137 (381)
281 PRK03369 murD UDP-N-acetylmura 96.6 0.032 6.8E-07 59.7 13.8 124 7-138 12-155 (488)
282 PRK05442 malate dehydrogenase; 96.6 0.0095 2.1E-07 60.1 9.2 101 6-110 3-132 (326)
283 PRK08328 hypothetical protein; 96.6 0.017 3.8E-07 55.3 10.5 124 8-137 28-154 (231)
284 TIGR01759 MalateDH-SF1 malate 96.6 0.014 3.1E-07 58.8 10.3 101 7-110 3-131 (323)
285 PF02629 CoA_binding: CoA bind 96.6 0.0028 6E-08 52.0 4.1 79 8-96 4-84 (96)
286 COG1064 AdhP Zn-dependent alco 96.5 0.012 2.7E-07 59.1 9.3 93 8-110 168-261 (339)
287 PRK14192 bifunctional 5,10-met 96.5 0.0067 1.5E-07 59.9 7.4 73 8-110 160-233 (283)
288 TIGR02717 AcCoA-syn-alpha acet 96.5 0.012 2.5E-07 62.2 9.6 106 8-131 8-126 (447)
289 PRK14982 acyl-ACP reductase; P 96.5 0.0097 2.1E-07 60.1 8.3 111 7-135 155-268 (340)
290 PRK00141 murD UDP-N-acetylmura 96.5 0.036 7.7E-07 59.1 12.9 114 7-129 15-150 (473)
291 PRK01390 murD UDP-N-acetylmura 96.5 0.043 9.3E-07 58.2 13.5 117 7-133 9-147 (460)
292 PRK12749 quinate/shikimate deh 96.5 0.022 4.7E-07 56.6 10.4 119 8-130 125-253 (288)
293 TIGR01019 sucCoAalpha succinyl 96.5 0.026 5.7E-07 55.8 10.9 113 7-133 6-121 (286)
294 cd01485 E1-1_like Ubiquitin ac 96.4 0.014 3.1E-07 54.6 8.6 126 7-136 19-148 (198)
295 PRK05086 malate dehydrogenase; 96.4 0.021 4.6E-07 57.3 10.4 97 8-111 1-121 (312)
296 PRK14191 bifunctional 5,10-met 96.4 0.0092 2E-07 58.6 7.5 74 8-111 158-232 (285)
297 TIGR01470 cysG_Nterm siroheme 96.4 0.035 7.5E-07 52.3 11.1 67 8-84 10-80 (205)
298 PF03447 NAD_binding_3: Homose 96.4 0.026 5.6E-07 47.9 9.4 106 14-130 1-115 (117)
299 PLN02477 glutamate dehydrogena 96.4 0.022 4.7E-07 59.1 10.5 115 8-132 207-333 (410)
300 cd01338 MDH_choloroplast_like 96.4 0.011 2.3E-07 59.7 8.1 100 8-110 3-130 (322)
301 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.019 4.2E-07 50.5 8.6 74 8-111 29-103 (140)
302 PRK06719 precorrin-2 dehydroge 96.4 0.027 5.9E-07 50.6 9.7 76 8-94 14-90 (157)
303 PLN00112 malate dehydrogenase 96.4 0.022 4.8E-07 59.6 10.3 101 7-110 100-228 (444)
304 PRK14874 aspartate-semialdehyd 96.4 0.0069 1.5E-07 61.5 6.4 92 7-111 1-97 (334)
305 PRK08644 thiamine biosynthesis 96.3 0.018 3.8E-07 54.5 8.7 120 8-133 29-150 (212)
306 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.0099 2.1E-07 54.8 6.5 89 8-111 63-159 (197)
307 COG2344 AT-rich DNA-binding pr 96.3 0.0073 1.6E-07 54.8 5.4 84 5-96 82-168 (211)
308 PRK02006 murD UDP-N-acetylmura 96.3 0.063 1.4E-06 57.6 13.7 119 6-130 6-151 (498)
309 PRK07688 thiamine/molybdopteri 96.3 0.023 5.1E-07 57.7 9.8 124 7-136 24-151 (339)
310 PRK09414 glutamate dehydrogena 96.3 0.036 7.7E-07 58.0 11.1 117 8-131 233-365 (445)
311 PRK14176 bifunctional 5,10-met 96.2 0.016 3.4E-07 57.0 7.8 73 8-110 165-238 (287)
312 PRK05472 redox-sensing transcr 96.2 0.0068 1.5E-07 57.4 5.2 80 7-94 84-166 (213)
313 PRK14183 bifunctional 5,10-met 96.2 0.015 3.2E-07 57.1 7.5 74 8-111 158-232 (281)
314 PRK14173 bifunctional 5,10-met 96.2 0.016 3.5E-07 57.0 7.8 74 8-111 156-230 (287)
315 CHL00194 ycf39 Ycf39; Provisio 96.2 0.015 3.2E-07 58.5 7.8 70 8-82 1-73 (317)
316 PRK15059 tartronate semialdehy 96.2 0.049 1.1E-06 54.2 11.4 104 325-443 163-266 (292)
317 PRK05678 succinyl-CoA syntheta 96.2 0.038 8.2E-07 54.8 10.3 116 7-135 8-125 (291)
318 COG0039 Mdh Malate/lactate deh 96.2 0.023 5E-07 56.6 8.7 72 8-81 1-77 (313)
319 PRK14170 bifunctional 5,10-met 96.1 0.019 4.1E-07 56.4 7.9 74 8-111 158-232 (284)
320 PF03720 UDPG_MGDP_dh_C: UDP-g 96.1 0.019 4E-07 48.0 6.8 87 17-111 17-104 (106)
321 PRK14186 bifunctional 5,10-met 96.1 0.018 3.9E-07 56.9 7.7 74 8-111 159-233 (297)
322 PRK14172 bifunctional 5,10-met 96.1 0.018 3.9E-07 56.4 7.6 74 8-111 159-233 (278)
323 PRK14177 bifunctional 5,10-met 96.1 0.021 4.5E-07 56.1 7.9 74 8-111 160-234 (284)
324 PRK14169 bifunctional 5,10-met 96.1 0.02 4.3E-07 56.2 7.6 74 8-111 157-231 (282)
325 cd00704 MDH Malate dehydrogena 96.0 0.019 4.1E-07 58.0 7.5 98 9-109 2-127 (323)
326 TIGR01757 Malate-DH_plant mala 96.0 0.057 1.2E-06 55.6 11.0 101 7-110 44-172 (387)
327 COG0289 DapB Dihydrodipicolina 96.0 0.065 1.4E-06 51.6 10.6 116 6-133 1-124 (266)
328 PRK05884 short chain dehydroge 96.0 0.11 2.3E-06 49.3 12.3 42 8-49 1-43 (223)
329 PRK05671 aspartate-semialdehyd 96.0 0.013 2.9E-07 59.3 6.3 94 6-111 3-100 (336)
330 PRK14180 bifunctional 5,10-met 96.0 0.022 4.7E-07 55.9 7.5 74 8-111 159-233 (282)
331 PRK13394 3-hydroxybutyrate deh 96.0 0.044 9.5E-07 52.9 9.7 91 1-110 1-94 (262)
332 PRK14166 bifunctional 5,10-met 96.0 0.024 5.1E-07 55.7 7.6 74 8-111 158-232 (282)
333 PRK14187 bifunctional 5,10-met 95.9 0.024 5.2E-07 55.9 7.6 74 8-111 161-235 (294)
334 PRK14190 bifunctional 5,10-met 95.9 0.024 5.2E-07 55.7 7.5 74 8-111 159-233 (284)
335 TIGR02355 moeB molybdopterin s 95.9 0.034 7.4E-07 53.7 8.5 124 8-137 25-150 (240)
336 PF05368 NmrA: NmrA-like famil 95.9 0.027 5.9E-07 53.7 7.8 70 10-83 1-74 (233)
337 cd00757 ThiF_MoeB_HesA_family 95.9 0.041 8.8E-07 52.7 9.0 124 7-136 21-146 (228)
338 PRK11861 bifunctional prephena 95.9 0.059 1.3E-06 60.0 11.5 93 77-170 1-106 (673)
339 cd01492 Aos1_SUMO Ubiquitin ac 95.9 0.052 1.1E-06 50.8 9.4 123 7-136 21-145 (197)
340 PRK02472 murD UDP-N-acetylmura 95.9 0.1 2.2E-06 55.1 12.8 116 8-130 6-138 (447)
341 PRK08223 hypothetical protein; 95.9 0.044 9.6E-07 54.0 9.2 125 7-136 27-154 (287)
342 PLN02516 methylenetetrahydrofo 95.9 0.027 5.8E-07 55.7 7.6 74 8-111 168-242 (299)
343 PRK12550 shikimate 5-dehydroge 95.9 0.063 1.4E-06 52.8 10.2 108 8-130 123-236 (272)
344 PRK01438 murD UDP-N-acetylmura 95.9 0.096 2.1E-06 55.9 12.5 117 7-130 16-152 (480)
345 PRK14193 bifunctional 5,10-met 95.8 0.029 6.3E-07 55.1 7.7 74 8-111 159-235 (284)
346 PRK08374 homoserine dehydrogen 95.8 0.09 1.9E-06 53.4 11.5 128 7-139 2-155 (336)
347 PRK00421 murC UDP-N-acetylmura 95.8 0.093 2E-06 55.7 12.0 111 7-127 7-134 (461)
348 PF10100 DUF2338: Uncharacteri 95.8 0.85 1.8E-05 46.6 17.8 158 7-169 1-195 (429)
349 TIGR01771 L-LDH-NAD L-lactate 95.8 0.061 1.3E-06 53.7 9.9 95 12-110 1-115 (299)
350 PRK07454 short chain dehydroge 95.8 0.065 1.4E-06 51.1 9.9 89 5-110 4-93 (241)
351 PRK03803 murD UDP-N-acetylmura 95.8 0.092 2E-06 55.5 11.8 122 9-138 8-146 (448)
352 PRK11559 garR tartronate semia 95.7 0.11 2.5E-06 51.5 11.8 104 325-443 166-269 (296)
353 PRK14171 bifunctional 5,10-met 95.7 0.033 7.1E-07 54.8 7.5 74 8-111 160-234 (288)
354 PRK14182 bifunctional 5,10-met 95.7 0.034 7.3E-07 54.6 7.6 74 8-111 158-232 (282)
355 PRK05690 molybdopterin biosynt 95.7 0.094 2E-06 50.8 10.5 124 7-136 32-157 (245)
356 PRK12828 short chain dehydroge 95.6 0.12 2.7E-06 48.8 11.2 85 7-110 7-92 (239)
357 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.19 4E-06 48.8 12.2 118 8-132 39-176 (254)
358 cd01336 MDH_cytoplasmic_cytoso 95.6 0.065 1.4E-06 54.1 9.5 99 8-109 3-129 (325)
359 COG0499 SAM1 S-adenosylhomocys 95.6 0.029 6.4E-07 56.0 6.7 86 9-109 211-297 (420)
360 PRK12939 short chain dehydroge 95.6 0.08 1.7E-06 50.6 9.9 93 1-110 1-94 (250)
361 PLN02520 bifunctional 3-dehydr 95.6 0.089 1.9E-06 56.8 11.1 113 8-130 380-495 (529)
362 PRK05597 molybdopterin biosynt 95.6 0.15 3.2E-06 52.2 12.1 124 8-137 29-154 (355)
363 PLN02383 aspartate semialdehyd 95.6 0.035 7.6E-07 56.5 7.4 92 5-111 5-103 (344)
364 PRK08762 molybdopterin biosynt 95.5 0.14 3E-06 52.9 11.8 123 8-136 136-260 (376)
365 PRK14178 bifunctional 5,10-met 95.5 0.037 8.1E-07 54.2 7.1 74 8-111 153-227 (279)
366 PLN02616 tetrahydrofolate dehy 95.5 0.041 8.9E-07 55.5 7.4 74 8-111 232-306 (364)
367 PLN02897 tetrahydrofolate dehy 95.5 0.041 8.8E-07 55.3 7.4 74 8-111 215-289 (345)
368 TIGR03649 ergot_EASG ergot alk 95.5 0.065 1.4E-06 52.7 8.9 35 9-43 1-36 (285)
369 TIGR01087 murD UDP-N-acetylmur 95.5 0.14 3.1E-06 53.8 11.9 121 9-138 1-140 (433)
370 PRK14181 bifunctional 5,10-met 95.5 0.047 1E-06 53.7 7.6 74 8-111 154-232 (287)
371 COG2084 MmsB 3-hydroxyisobutyr 95.5 0.17 3.6E-06 49.9 11.4 104 324-443 164-268 (286)
372 PRK09599 6-phosphogluconate de 95.5 0.022 4.9E-07 56.8 5.6 86 206-301 189-277 (301)
373 PRK04308 murD UDP-N-acetylmura 95.4 0.18 4E-06 53.2 12.7 115 8-130 6-140 (445)
374 PRK12429 3-hydroxybutyrate deh 95.4 0.097 2.1E-06 50.3 9.7 86 8-110 5-91 (258)
375 PRK12490 6-phosphogluconate de 95.4 0.025 5.5E-07 56.4 5.7 75 221-301 201-276 (299)
376 PRK11863 N-acetyl-gamma-glutam 95.4 0.057 1.2E-06 54.0 8.1 81 7-111 2-84 (313)
377 TIGR01082 murC UDP-N-acetylmur 95.4 0.14 3.1E-06 54.1 11.6 115 9-133 1-134 (448)
378 PF02056 Glyco_hydro_4: Family 95.4 0.19 4.2E-06 46.2 10.7 73 9-84 1-84 (183)
379 PRK06139 short chain dehydroge 95.3 0.11 2.5E-06 52.5 10.3 93 1-110 1-94 (330)
380 PRK00676 hemA glutamyl-tRNA re 95.3 0.048 1E-06 55.0 7.2 35 7-41 174-209 (338)
381 PRK02705 murD UDP-N-acetylmura 95.3 0.19 4.1E-06 53.2 12.2 33 9-41 2-34 (459)
382 PRK14030 glutamate dehydrogena 95.3 0.17 3.8E-06 52.9 11.3 117 8-131 229-365 (445)
383 PRK10537 voltage-gated potassi 95.3 0.22 4.7E-06 51.7 12.0 113 8-133 241-356 (393)
384 PRK11908 NAD-dependent epimera 95.3 0.08 1.7E-06 53.8 8.9 40 7-46 1-42 (347)
385 TIGR01758 MDH_euk_cyt malate d 95.2 0.055 1.2E-06 54.6 7.4 33 9-41 1-41 (324)
386 PLN00141 Tic62-NAD(P)-related 95.2 0.047 1E-06 52.8 6.7 41 6-46 16-57 (251)
387 PRK10538 malonic semialdehyde 95.2 0.15 3.2E-06 49.0 10.2 82 8-109 1-83 (248)
388 PRK14168 bifunctional 5,10-met 95.2 0.066 1.4E-06 53.0 7.6 74 8-111 162-240 (297)
389 TIGR01505 tartro_sem_red 2-hyd 95.2 0.32 6.9E-06 48.2 12.6 105 324-443 162-266 (291)
390 PRK07877 hypothetical protein; 95.1 0.088 1.9E-06 58.5 9.2 124 7-137 107-232 (722)
391 PRK14852 hypothetical protein; 95.1 0.11 2.3E-06 59.1 9.8 126 7-137 332-460 (989)
392 PLN03209 translocon at the inn 95.1 0.43 9.4E-06 51.6 13.9 74 9-82 82-168 (576)
393 PRK06153 hypothetical protein; 95.1 0.14 3.1E-06 52.3 9.8 119 8-135 177-300 (393)
394 TIGR01692 HIBADH 3-hydroxyisob 95.1 0.17 3.8E-06 50.1 10.4 106 324-443 159-270 (288)
395 PRK15461 NADH-dependent gamma- 95.0 0.29 6.2E-06 48.8 11.9 103 324-442 164-268 (296)
396 PRK12409 D-amino acid dehydrog 95.0 0.028 6.1E-07 58.5 4.8 34 7-40 1-34 (410)
397 PRK14851 hypothetical protein; 95.0 0.12 2.6E-06 57.2 9.8 125 7-136 43-170 (679)
398 PRK14185 bifunctional 5,10-met 95.0 0.09 2E-06 51.9 7.9 74 8-111 158-236 (293)
399 COG0190 FolD 5,10-methylene-te 95.0 0.077 1.7E-06 51.7 7.3 74 8-111 157-231 (283)
400 PRK06182 short chain dehydroge 95.0 0.2 4.3E-06 48.9 10.4 80 8-110 4-84 (273)
401 PRK08664 aspartate-semialdehyd 94.9 0.094 2E-06 53.6 8.2 97 7-111 3-110 (349)
402 PRK12829 short chain dehydroge 94.9 0.19 4E-06 48.5 10.0 87 6-111 10-97 (264)
403 TIGR00978 asd_EA aspartate-sem 94.9 0.082 1.8E-06 53.8 7.7 97 8-111 1-107 (341)
404 PRK07878 molybdopterin biosynt 94.9 0.14 3.1E-06 53.1 9.6 125 7-137 42-168 (392)
405 PRK03806 murD UDP-N-acetylmura 94.9 0.39 8.4E-06 50.6 13.1 120 1-130 1-135 (438)
406 PRK14167 bifunctional 5,10-met 94.9 0.088 1.9E-06 52.1 7.5 74 8-111 158-236 (297)
407 TIGR01851 argC_other N-acetyl- 94.9 0.11 2.4E-06 51.8 8.1 80 8-111 2-83 (310)
408 TIGR01546 GAPDH-II_archae glyc 94.8 0.15 3.3E-06 51.4 9.3 40 10-49 1-42 (333)
409 PRK05653 fabG 3-ketoacyl-(acyl 94.8 0.2 4.3E-06 47.5 9.9 84 8-110 6-92 (246)
410 PF00208 ELFV_dehydrog: Glutam 94.8 0.18 3.9E-06 48.8 9.4 117 8-132 33-169 (244)
411 PRK01368 murD UDP-N-acetylmura 94.8 0.35 7.5E-06 51.3 12.4 121 8-137 7-141 (454)
412 PRK08309 short chain dehydroge 94.8 0.39 8.5E-06 44.0 11.2 41 8-48 1-41 (177)
413 COG2242 CobL Precorrin-6B meth 94.7 0.63 1.4E-05 42.7 12.1 123 9-137 37-164 (187)
414 TIGR01296 asd_B aspartate-semi 94.7 0.052 1.1E-06 55.2 5.7 89 9-110 1-94 (339)
415 PRK04690 murD UDP-N-acetylmura 94.7 0.35 7.6E-06 51.5 12.3 114 7-129 8-144 (468)
416 PRK07109 short chain dehydroge 94.7 0.22 4.7E-06 50.5 10.3 84 8-110 9-95 (334)
417 PRK07326 short chain dehydroge 94.7 0.21 4.6E-06 47.3 9.7 41 8-48 7-48 (237)
418 PRK08265 short chain dehydroge 94.7 0.28 6.1E-06 47.5 10.7 82 8-109 7-89 (261)
419 COG1648 CysG Siroheme synthase 94.7 0.53 1.2E-05 44.4 12.0 76 8-91 13-89 (210)
420 PLN02353 probable UDP-glucose 94.7 0.25 5.4E-06 52.5 10.9 116 7-133 324-466 (473)
421 PRK06101 short chain dehydroge 94.7 0.26 5.7E-06 47.0 10.2 42 8-49 2-44 (240)
422 PRK06180 short chain dehydroge 94.6 0.24 5.1E-06 48.5 10.0 83 8-110 5-88 (277)
423 PRK14573 bifunctional D-alanyl 94.6 0.26 5.6E-06 56.2 11.5 111 7-127 4-131 (809)
424 cd05296 GH4_P_beta_glucosidase 94.6 0.4 8.7E-06 50.2 12.0 74 8-84 1-86 (419)
425 PRK05693 short chain dehydroge 94.6 0.28 6.2E-06 47.8 10.5 81 7-110 1-82 (274)
426 KOG3007 Mu-crystallin [Amino a 94.6 0.18 3.9E-06 48.5 8.4 117 8-133 139-261 (333)
427 cd05298 GH4_GlvA_pagL_like Gly 94.6 0.29 6.4E-06 51.4 11.0 73 8-84 1-85 (437)
428 TIGR03855 NAD_NadX aspartate d 94.5 0.32 6.8E-06 46.6 10.3 86 33-130 5-93 (229)
429 COG0300 DltE Short-chain dehyd 94.5 0.32 6.8E-06 47.5 10.3 86 7-108 6-92 (265)
430 cd00755 YgdL_like Family of ac 94.5 0.31 6.8E-06 46.7 10.2 125 7-136 11-137 (231)
431 PRK05993 short chain dehydroge 94.5 0.25 5.5E-06 48.4 9.9 40 8-47 5-45 (277)
432 PRK06057 short chain dehydroge 94.5 0.4 8.6E-06 46.2 11.1 40 8-47 8-48 (255)
433 PRK09186 flagellin modificatio 94.5 0.24 5.3E-06 47.5 9.6 90 1-108 1-91 (256)
434 cd05197 GH4_glycoside_hydrolas 94.5 0.38 8.3E-06 50.4 11.6 74 8-84 1-85 (425)
435 PRK08267 short chain dehydroge 94.5 0.34 7.3E-06 46.8 10.6 85 7-110 1-87 (260)
436 PRK07074 short chain dehydroge 94.4 0.35 7.6E-06 46.5 10.6 84 8-110 3-87 (257)
437 PLN00016 RNA-binding protein; 94.4 0.29 6.3E-06 50.4 10.4 38 5-42 50-92 (378)
438 PRK07774 short chain dehydroge 94.4 0.29 6.2E-06 46.8 9.8 86 8-110 7-93 (250)
439 PRK14184 bifunctional 5,10-met 94.3 0.13 2.9E-06 50.6 7.3 74 8-111 158-236 (286)
440 cd01491 Ube1_repeat1 Ubiquitin 94.3 0.2 4.4E-06 49.5 8.7 119 8-136 20-140 (286)
441 PRK08040 putative semialdehyde 94.3 0.062 1.3E-06 54.4 5.1 94 6-111 3-100 (336)
442 PRK08340 glucose-1-dehydrogena 94.3 0.26 5.6E-06 47.7 9.3 84 8-109 1-85 (259)
443 PRK05868 hypothetical protein; 94.3 0.051 1.1E-06 56.0 4.6 35 7-41 1-35 (372)
444 COG1063 Tdh Threonine dehydrog 94.3 0.25 5.4E-06 50.5 9.6 95 9-111 171-272 (350)
445 PRK15116 sulfur acceptor prote 94.3 0.4 8.8E-06 46.9 10.5 122 7-133 30-153 (268)
446 PRK14174 bifunctional 5,10-met 94.3 0.15 3.3E-06 50.5 7.6 74 8-111 160-238 (295)
447 PRK07067 sorbitol dehydrogenas 94.3 0.38 8.3E-06 46.3 10.5 82 8-109 7-89 (257)
448 TIGR03736 PRTRC_ThiF PRTRC sys 94.2 0.29 6.2E-06 47.3 9.3 35 6-40 10-55 (244)
449 PRK08017 oxidoreductase; Provi 94.2 0.31 6.8E-06 46.8 9.8 39 8-46 3-42 (256)
450 PRK08643 acetoin reductase; Va 94.2 0.28 6.1E-06 47.2 9.4 85 9-110 4-89 (256)
451 COG1486 CelF Alpha-galactosida 94.2 0.31 6.7E-06 50.6 9.9 75 7-84 3-88 (442)
452 PRK06200 2,3-dihydroxy-2,3-dih 94.2 0.47 1E-05 45.9 10.9 83 8-110 7-90 (263)
453 PRK05600 thiamine biosynthesis 94.2 0.2 4.4E-06 51.5 8.6 123 8-136 42-166 (370)
454 PRK07063 short chain dehydroge 94.1 0.47 1E-05 45.8 10.8 95 1-110 1-96 (260)
455 PRK00711 D-amino acid dehydrog 94.1 0.06 1.3E-06 56.1 4.7 34 8-41 1-34 (416)
456 PRK05786 fabG 3-ketoacyl-(acyl 94.1 0.44 9.5E-06 45.2 10.3 41 8-48 6-47 (238)
457 COG0026 PurK Phosphoribosylami 94.1 0.085 1.8E-06 53.2 5.4 37 7-43 1-37 (375)
458 PRK06124 gluconate 5-dehydroge 94.0 0.34 7.3E-06 46.6 9.6 86 8-110 12-98 (256)
459 PRK05866 short chain dehydroge 94.0 0.32 6.8E-06 48.3 9.5 86 8-110 41-127 (293)
460 PRK07024 short chain dehydroge 94.0 0.27 5.9E-06 47.4 8.9 85 8-110 3-88 (257)
461 PF13450 NAD_binding_8: NAD(P) 94.0 0.084 1.8E-06 40.2 4.1 30 12-41 1-30 (68)
462 PF03059 NAS: Nicotianamine sy 94.0 0.23 5E-06 48.7 8.1 102 8-109 122-231 (276)
463 PRK06728 aspartate-semialdehyd 94.0 0.13 2.8E-06 52.3 6.5 89 8-111 6-102 (347)
464 PRK07523 gluconate 5-dehydroge 94.0 0.34 7.3E-06 46.6 9.4 86 8-110 11-97 (255)
465 COG0136 Asd Aspartate-semialde 93.9 0.15 3.3E-06 51.0 6.9 93 7-111 1-100 (334)
466 PRK12936 3-ketoacyl-(acyl-carr 93.9 0.53 1.1E-05 44.7 10.7 84 7-110 6-90 (245)
467 PRK06505 enoyl-(acyl carrier p 93.9 0.51 1.1E-05 46.2 10.7 82 10-110 10-95 (271)
468 PRK08339 short chain dehydroge 93.9 0.54 1.2E-05 45.7 10.8 48 1-48 1-50 (263)
469 PF00070 Pyr_redox: Pyridine n 93.9 0.099 2.1E-06 41.0 4.6 34 9-42 1-34 (80)
470 KOG1370 S-adenosylhomocysteine 93.9 0.23 4.9E-06 48.6 7.7 87 10-110 217-303 (434)
471 COG0334 GdhA Glutamate dehydro 93.9 0.33 7.2E-06 49.8 9.3 114 8-131 208-333 (411)
472 PRK07890 short chain dehydroge 93.9 0.37 7.9E-06 46.3 9.5 86 8-110 6-92 (258)
473 PRK07411 hypothetical protein; 93.9 0.24 5.2E-06 51.4 8.6 125 7-137 38-164 (390)
474 PRK08306 dipicolinate synthase 93.9 0.26 5.7E-06 49.1 8.6 108 8-133 3-121 (296)
475 PRK06753 hypothetical protein; 93.8 0.071 1.5E-06 54.6 4.6 34 8-41 1-34 (373)
476 PRK08163 salicylate hydroxylas 93.8 0.078 1.7E-06 54.8 4.9 35 7-41 4-38 (396)
477 PRK14031 glutamate dehydrogena 93.8 0.46 1E-05 49.8 10.4 116 8-131 229-364 (444)
478 PRK04663 murD UDP-N-acetylmura 93.7 0.73 1.6E-05 48.5 12.0 118 7-136 7-144 (438)
479 PRK07814 short chain dehydroge 93.7 0.41 8.8E-06 46.4 9.5 85 8-109 11-96 (263)
480 PRK07666 fabG 3-ketoacyl-(acyl 93.7 0.46 1E-05 45.1 9.7 47 1-47 1-48 (239)
481 PRK12826 3-ketoacyl-(acyl-carr 93.6 0.39 8.5E-06 45.7 9.2 41 8-48 7-48 (251)
482 cd01489 Uba2_SUMO Ubiquitin ac 93.6 0.26 5.6E-06 49.4 8.0 123 9-136 1-125 (312)
483 cd01484 E1-2_like Ubiquitin ac 93.6 0.31 6.8E-06 46.8 8.3 124 9-136 1-126 (234)
484 TIGR01963 PHB_DH 3-hydroxybuty 93.6 0.38 8.3E-06 46.0 9.0 85 8-109 2-87 (255)
485 PRK07062 short chain dehydroge 93.6 0.81 1.8E-05 44.2 11.4 85 9-110 10-97 (265)
486 COG0074 SucD Succinyl-CoA synt 93.6 0.36 7.9E-06 46.9 8.5 114 6-131 7-121 (293)
487 PRK06172 short chain dehydroge 93.6 0.5 1.1E-05 45.3 9.8 41 8-48 8-49 (253)
488 PRK08773 2-octaprenyl-3-methyl 93.6 0.097 2.1E-06 54.1 5.1 36 5-40 4-39 (392)
489 PRK07825 short chain dehydroge 93.6 0.59 1.3E-05 45.5 10.4 81 8-109 6-87 (273)
490 PRK06194 hypothetical protein; 93.5 0.65 1.4E-05 45.5 10.8 84 8-110 7-93 (287)
491 COG2227 UbiG 2-polyprenyl-3-me 93.5 0.58 1.2E-05 44.6 9.7 94 8-107 61-160 (243)
492 PRK06598 aspartate-semialdehyd 93.5 0.14 3.1E-06 52.3 6.0 94 7-111 1-101 (369)
493 PRK06940 short chain dehydroge 93.5 0.65 1.4E-05 45.5 10.6 41 7-48 1-42 (275)
494 PRK06482 short chain dehydroge 93.5 0.57 1.2E-05 45.6 10.2 83 8-110 3-86 (276)
495 PRK03815 murD UDP-N-acetylmura 93.5 0.43 9.3E-06 49.7 9.7 108 8-127 1-116 (401)
496 PRK06500 short chain dehydroge 93.5 0.69 1.5E-05 44.1 10.6 40 8-47 7-47 (249)
497 PRK06019 phosphoribosylaminoim 93.5 0.13 2.9E-06 53.0 5.9 36 7-42 2-37 (372)
498 TIGR03325 BphB_TodD cis-2,3-di 93.4 0.58 1.2E-05 45.3 10.0 40 8-47 6-46 (262)
499 PRK00517 prmA ribosomal protei 93.4 0.83 1.8E-05 44.2 11.1 114 8-131 121-235 (250)
500 TIGR01777 yfcH conserved hypot 93.4 0.17 3.7E-06 49.6 6.4 34 11-44 2-36 (292)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-128 Score=934.94 Aligned_cols=469 Identities=59% Similarity=0.957 Sum_probs=450.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+.||+||+|.||++||+|++++||+|.+|||++++++++.+..... .++.++.|++|+++.|++|+.|+++|+.+..
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~--k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKG--KNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccC--CCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 35799999999999999999999999999999999999998765432 2688999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++.++++|+|+|.+|+||||.+|+++.+|.++.+.+.++|++|++++||||+++|+.||++|+||++++|+.++|+|++|
T Consensus 81 VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 81 VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIF 246 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l 246 (487)
+++. +++|||.|+|+.|+||+||||||+|+|+.||+++|+|.+++...|++.+++.++|.+||++.++||+++|+.+++
T Consensus 161 aAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL 239 (473)
T COG0362 161 AAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADIL 239 (473)
T ss_pred Hhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 9996 699999999999999999999999999999999999999999777999999999999999999999999999999
Q ss_pred ccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccch
Q 011394 247 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDK 326 (487)
Q Consensus 247 ~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 326 (487)
+.+|..++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|+.|++|+.+++.|++|... .+.+.
T Consensus 240 ~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~~----~~~dk 315 (473)
T COG0362 240 RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKLG----EPGDK 315 (473)
T ss_pred hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCC----CCCCH
Confidence 98876556689999999999999999999999999999999999999999999999999999999888541 25688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHH
Q 011394 327 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 406 (487)
Q Consensus 327 ~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~ 406 (487)
..|+++|++|+|+++|++|+|||.+|+++|++|+|++++.+|++|||+||||||.||+.|.++|.++|++.||+++|+|.
T Consensus 316 ~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~ 395 (473)
T COG0362 316 EEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFK 395 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccccCC
Q 011394 407 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIA 482 (487)
Q Consensus 407 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~~~ 482 (487)
..+++.+.+||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||||||+|+|++|.||++|++.+
T Consensus 396 ~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 396 SILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-121 Score=871.57 Aligned_cols=477 Identities=60% Similarity=0.975 Sum_probs=454.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+.||+||++.||+++++|++++||.|.+|||+.++++++.+.... +..+....|++|++..|++|++|++.|+.+.
T Consensus 5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~ 82 (487)
T KOG2653|consen 5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGA 82 (487)
T ss_pred cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCC
Confidence 34689999999999999999999999999999999999999876543 3457889999999999999999999999999
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHH
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLK 165 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ 165 (487)
+++..+++|.++|.+|++|||.+|+.+.+|.++.+.+.++|+-|++++||||+++|+.||++|+||+++++..++++|+.
T Consensus 83 pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 83 PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQK 162 (487)
T ss_pred cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 166 VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 166 ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+++++.+++|||.++|+.|+||+||||||+|+|+.||+++|+|.++++.+|++.+++.++|..||.+.+.||+++|+.++
T Consensus 163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dI 242 (487)
T KOG2653|consen 163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADI 242 (487)
T ss_pred HHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHH
Confidence 99998889999999999999999999999999999999999999999977799999999999999999999999999999
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
++-+|. .+.+++++|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|++|++|+.+++.+.+|..+ .....+
T Consensus 243 lk~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~--~~~~~~ 319 (487)
T KOG2653|consen 243 LKFKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVK--RDMGDD 319 (487)
T ss_pred hheecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--hhhhhH
Confidence 988764 34489999999999999999999999999999999999999999999999999999999988642 112335
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
...|++++++|+|+++|++|+|||+||++++++++|++|+..|+++||+||||||.||+.|.++|+++|+|+|+++|+.|
T Consensus 320 k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF 399 (487)
T KOG2653|consen 320 KKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFF 399 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCC-ccccccccCCcC
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG-SFHTEWFKIAKQ 484 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~-~~h~~w~~~~~~ 484 (487)
..++.+.+.+||++|..|+++|||+|++|+||+|||+||++++|+||+||||||||||||++++++| .+|++|++.+.+
T Consensus 400 ~~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~ 479 (487)
T KOG2653|consen 400 AKAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGN 479 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 799999998777
Q ss_pred CCC
Q 011394 485 SKI 487 (487)
Q Consensus 485 ~~~ 487 (487)
+++
T Consensus 480 ~s~ 482 (487)
T KOG2653|consen 480 VSS 482 (487)
T ss_pred ccc
Confidence 764
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-113 Score=894.73 Aligned_cols=469 Identities=59% Similarity=0.991 Sum_probs=439.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|++|||||+|.||.+||++|+++||+|++|||++++++++.+..... +..+..+.+++|+++.++++|+||+|||++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 46899999999999999999999999999999999999998753321 11245788999999877779999999999999
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKV 166 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~i 166 (487)
++++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.+
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~i 159 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKC 159 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccc
Q 011394 167 AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADI 245 (487)
Q Consensus 167 g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~-~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~ 245 (487)
+.+. +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| +|++++.++|+.|+.+.++||+++++.++
T Consensus 160 a~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~ 237 (470)
T PTZ00142 160 SAKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKI 237 (470)
T ss_pred hhhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 9874 78899999999999999999999999999999999999998 577 99999999999999999999999999999
Q ss_pred cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccc
Q 011394 246 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVD 325 (487)
Q Consensus 246 l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 325 (487)
+.++|+.++.+++|.|+|.++|||||+|++++|.++|||+|+|++||++|++|..|++|..+++.+++|... .+....+
T Consensus 238 ~~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~-~~~~~~~ 316 (470)
T PTZ00142 238 LAKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPA-NKTETED 316 (470)
T ss_pred hhcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccc-ccccccc
Confidence 988765332589999999999999999999999999999999999999999999999999999999876410 0001236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhH
Q 011394 326 KQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEF 405 (487)
Q Consensus 326 ~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~ 405 (487)
++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccc
Q 011394 406 AKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479 (487)
Q Consensus 406 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~ 479 (487)
...+++..++|||+|..|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=5.9e-113 Score=889.14 Aligned_cols=483 Identities=84% Similarity=1.308 Sum_probs=447.3
Q ss_pred CCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 2 ~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+...+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.|++|+++.|+.||+||+||
T Consensus 1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v 80 (493)
T PLN02350 1 MASAALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILV 80 (493)
T ss_pred CCCCCCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence 34567889999999999999999999999999999999999999887421111002346889999999888899999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHH
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIED 161 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ 161 (487)
|++.++++|++++++.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+.+|+.|+++|+||+++++++++|
T Consensus 81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~p 160 (493)
T PLN02350 81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIED 160 (493)
T ss_pred CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhHh
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLTNEELQNVFTEWNKGELLSFLIE 240 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~-g~i~~~~i~~v~~~~~~~~~~s~~~~ 240 (487)
+|+.++++. +++||++|+|+.|+||++||+||+++++++++++|++.++++. | +|++++.++|+.|+.+.+.||+++
T Consensus 161 vL~~ia~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~lle 238 (493)
T PLN02350 161 ILEKVAAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIE 238 (493)
T ss_pred HHHHHhhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHH
Confidence 999999875 7789999999999999999999999999999999999999995 7 999999999999999999999999
Q ss_pred hhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCC
Q 011394 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQS 320 (487)
Q Consensus 241 ~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~ 320 (487)
++.+++..+++|+++|.++.++||++|||||+|++++|.++|+|+|++.+++++|+.|+.|++|..+++.+++|......
T Consensus 239 i~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~ 318 (493)
T PLN02350 239 ITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDIL 318 (493)
T ss_pred HHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCccccc
Confidence 99998877666787899999999999999999999999999999999999999999999999999999999866310000
Q ss_pred --CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCC
Q 011394 321 --NQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLAN 398 (487)
Q Consensus 321 --~~~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ 398 (487)
....+...|+++|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|
T Consensus 319 ~~~~~~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~ 398 (493)
T PLN02350 319 SADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLAS 398 (493)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhh
Confidence 012256789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCcccccc
Q 011394 399 LLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEW 478 (487)
Q Consensus 399 ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w 478 (487)
|++++.|.+.+.+..++|||+|..|++.|+|+|++++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|
T Consensus 399 l~~~~~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w 478 (493)
T PLN02350 399 LLVDPEFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEW 478 (493)
T ss_pred hcCCHHHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 011394 479 FKIAKQSK 486 (487)
Q Consensus 479 ~~~~~~~~ 486 (487)
++.+..++
T Consensus 479 ~~~~~~~~ 486 (493)
T PLN02350 479 TKLARKSK 486 (493)
T ss_pred hhhcCccc
Confidence 97666554
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=9.5e-112 Score=876.57 Aligned_cols=456 Identities=60% Similarity=0.970 Sum_probs=431.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-hhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhh
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSA 96 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~ 96 (487)
||.+||+||+++||+|.+|||++++++++.+. +... +++.+.|++|++++++.+|+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 3111 3678899999999888899999999999999999999999
Q ss_pred cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCe
Q 011394 97 YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 176 (487)
Q Consensus 97 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~ 176 (487)
.+.+|++|||+||+.|.+++++.+.++++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986688999
Q ss_pred EEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCc
Q 011394 177 VTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDG 255 (487)
Q Consensus 177 ~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~-~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~ 255 (487)
+.|+|+.|+||++|||||++++++|++++|++.++++ .| ++++++.++|+.||.+.++||+++++.+++..+|...+.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999876522455
Q ss_pred hhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchhhHHHHHHH
Q 011394 256 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQ 335 (487)
Q Consensus 256 ~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 335 (487)
+++|.|+|.++|||||+|++++|.++|+|+|+|+.++++|+.|..+++|..+++.|.+|.. ....+.+||+|||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~----~~~~~~~~~i~~v~~ 312 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA----KFEGDKAEFIEDVRQ 312 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC----cccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999887642 112356899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhh
Q 011394 336 ALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSA 415 (487)
Q Consensus 336 ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 415 (487)
||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||+++.|...+++..++
T Consensus 313 al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~~ 392 (459)
T PRK09287 313 ALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDA 392 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccccC
Q 011394 416 WRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKI 481 (487)
Q Consensus 416 ~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~~~ 481 (487)
|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|+++
T Consensus 393 ~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~~ 458 (459)
T PRK09287 393 LRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSED 458 (459)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=1.5e-110 Score=871.65 Aligned_cols=464 Identities=59% Similarity=0.963 Sum_probs=435.3
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++.+|+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 599999999999999999999999999999999999988752110 024567899999987778999999999999999
Q ss_pred HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHhc
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAA 168 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~ 168 (487)
++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++|||||+.+|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 169 QVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 169 ~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~-~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
++ +++||++|+|+.|+||++||+||++++++|++++|++.+++ +.| +|++++.++|+.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 75 67899999999999999999999999999999999999996 577 9999999999999999999999999999998
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
.+|+ .+.+++|.|+|.++|||||+|++++|.++|||+|+|+++++.|+.|..|++|..+++.|.+|.. .....+.+
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~---~~~~~~~~ 312 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLA---PEPAVDKE 312 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCc---ccccccHH
Confidence 8764 3458999999999999999999999999999999999999999999999999999999877632 00113568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
||+|||||||||++|++|+|||+||+++|++|+|++|+.+|++|||+||||||+||+.|.++|+++|++.||++|+.|..
T Consensus 313 ~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~~ 392 (467)
T TIGR00873 313 EFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKD 392 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCC--cccccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEG--SFHTEWFK 480 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~--~~h~~w~~ 480 (487)
.+++..++|||+|..|++.|+|+|++|+||+||++++++++|+|+|||||||||+|+|+|+|++| .||++|++
T Consensus 393 ~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 393 ALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999963
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=1e-84 Score=625.42 Aligned_cols=291 Identities=64% Similarity=1.023 Sum_probs=248.4
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhcc
Q 011394 186 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 265 (487)
Q Consensus 186 g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~ 265 (487)
||+||||||+|+|++||+++|++.++++..|++++++.++|+.||.|.++|||++++.+++++++ .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976669999999999999999999999999999999876 56679999999999
Q ss_pred CCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 011394 266 GMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSY 345 (487)
Q Consensus 266 ~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ai~~~~~~~~ 345 (487)
+|||||+|++++|.++|||+|+|++||++|++|+.+++|..+++.+++|... .....+...|+++|++|++++++++|
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~--~~~~~~~~~~i~~l~~Aly~~~i~~y 157 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKF--DESKEDKEEFIEDLRKALYAAKIISY 157 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-S--TTS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhccccccc--ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886410 01245788999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHHHHhhhhhhHHHHHHHHHH
Q 011394 346 AQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAIN 425 (487)
Q Consensus 346 aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~~ 425 (487)
+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.|||++|.|.+.+++..++|||||..|++
T Consensus 158 aQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai~ 237 (291)
T PF00393_consen 158 AQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAIE 237 (291)
T ss_dssp HHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhhcCCCchhhHHHHHhhccCCcccccccCCCccccccc
Q 011394 426 SGISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDMEGSFHTEWF 479 (487)
Q Consensus 426 ~g~p~p~~~aal~~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~d~~~~~h~~w~ 479 (487)
.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 238 ~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 238 AGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred cCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-61 Score=435.88 Aligned_cols=298 Identities=28% Similarity=0.512 Sum_probs=269.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+||+||||.||.+|.++|.+.||+|++||+|++.++++...+ ++.++|++++++.|..+++|.++||.+..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 6899999999999999999999999999999999999988765 467889999999999999999999999899
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+.+++++.+.|.+|++|||.+|+++.++.++.+.++++|++|+|++.|||..+++.|-++|+|||.++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
. |
T Consensus 154 ~---------------g--------------------------------------------------------------- 155 (300)
T COG1023 154 P---------------G--------------------------------------------------------------- 155 (300)
T ss_pred c---------------C---------------------------------------------------------------
Confidence 2 1
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
. +.| .+.+| .++|
T Consensus 156 e-~Gy---------------------------------------------------------l~~Gp---------~GsG 168 (300)
T COG1023 156 E-DGY---------------------------------------------------------LYCGP---------SGSG 168 (300)
T ss_pred c-Ccc---------------------------------------------------------ccccC---------CCcc
Confidence 0 000 00123 2789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
||+|||||+|||++||+|+|||++|+.+ .|++|+++|+++||+|++||||||+.+.++|+++|+|+.+- ..+.+
T Consensus 169 HfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~d 242 (300)
T COG1023 169 HFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVSD 242 (300)
T ss_pred hhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceecc
Confidence 9999999999999999999999999974 68899999999999999999999999999999998875543 33333
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCchhhHHHHHhhccCCcccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFDSYRRERLPANLVQAQRDYFGAHTYERI 468 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~~~~~~~~~~~~i~a~rd~fG~H~~~r~ 468 (487)
++++ ||+|++|+++|+|+|+|+.||+ +|.|.+...+..+++.|+|+.||+|..+++
T Consensus 243 ---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 243 ---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred ---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 5677 9999999999999999999995 999998888889999999999999998764
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=2.4e-54 Score=429.95 Aligned_cols=295 Identities=29% Similarity=0.504 Sum_probs=258.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ ...+.+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 5899999999999999999999999999999999999888654 344578888877666799999999998 89
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|.++|+||++++++.++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
.+. ..++|+|
T Consensus 153 ~~~----~~~~~~G------------------------------------------------------------------ 162 (298)
T TIGR00872 153 PEE----QGYLYCG------------------------------------------------------------------ 162 (298)
T ss_pred CcC----CCEEEEC------------------------------------------------------------------
Confidence 310 0011111
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
+ .+++
T Consensus 163 ------------------------------------------------------------------~---------~G~~ 167 (298)
T TIGR00872 163 ------------------------------------------------------------------P---------CGSG 167 (298)
T ss_pred ------------------------------------------------------------------C---------ccHh
Confidence 0 1455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
+++|++||++++++|++|+|||.+++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |..
T Consensus 168 ~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~~ 237 (298)
T TIGR00872 168 HFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FSG 237 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HHH
Confidence 7789999999999999999999999875 899999999999999999999999999999998875433 555
Q ss_pred HH-hhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCC-CchhhHHHHHhhccCCccccc
Q 011394 408 EI-VDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSYRRE-RLPANLVQAQRDYFGAHTYER 467 (487)
Q Consensus 408 ~~-~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~~~~-~~~~~~i~a~rd~fG~H~~~r 467 (487)
.+ +++++ ||+|.+|++.|+|+|++++||.|++.+++. ++|+|+|||||||||+|+|++
T Consensus 238 ~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~ 297 (298)
T TIGR00872 238 RVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKK 297 (298)
T ss_pred HHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCC
Confidence 43 44444 999999999999999999999999988888 999999999999999999986
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.9e-47 Score=381.34 Aligned_cols=299 Identities=34% Similarity=0.581 Sum_probs=242.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||++|+++|++|++|||++++++++.+.+ +..+.+++|+++.++.+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 5899999999999999999999999999999999998886543 467789999988644479999999998789
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|..+.++.+.++++|++|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccc
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFG 247 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~ 247 (487)
.+. +..++|+|+.|+|+.+|+++|.+.++.++
T Consensus 154 ~~~---~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~--------------------------------------------- 185 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHFVKMVHNGIEYGMMQ--------------------------------------------- 185 (301)
T ss_pred ccc---cCCeEeECCCcHHHHHHHHHHHHHHHHHH---------------------------------------------
Confidence 620 01257777766666655555555444444
Q ss_pred cccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccchHHHHHHHhhcCCCCCCCCCCccchh
Q 011394 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQ 327 (487)
Q Consensus 248 ~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (487)
T Consensus 186 -------------------------------------------------------------------------------- 185 (301)
T PRK09599 186 -------------------------------------------------------------------------------- 185 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHHH
Q 011394 328 KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAK 407 (487)
Q Consensus 328 ~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~~ 407 (487)
+|+|+|.++++ ++|++|+++++++|+.||+++|++++...+++.+++.. +.+..
T Consensus 186 ----------------~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~~ 239 (301)
T PRK09599 186 ----------------AYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEISG 239 (301)
T ss_pred ----------------HHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHHH
Confidence 44444444443 35666666667777777777777777777777554321 11222
Q ss_pred HHhhhhhhHHHHHHHHHHcCCChHHHHHHHHH-HHhhcCCCchhhHHHHHhhccCCcccccc
Q 011394 408 EIVDRQSAWRRVVCLAINSGISTPGMSSSLAY-FDSYRRERLPANLVQAQRDYFGAHTYERI 468 (487)
Q Consensus 408 ~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~-~~~~~~~~~~~~~i~a~rd~fG~H~~~r~ 468 (487)
.++. ...+||++..|.+.|+|+|++++++.| +.++....+|.+.+|+||||||+|+|+|+
T Consensus 240 ~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 240 YVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 2222 334499999999999999999999987 99999999999999999999999999985
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=8.7e-48 Score=372.04 Aligned_cols=260 Identities=26% Similarity=0.384 Sum_probs=240.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+||||||+|.||.+||.||.++||+|++|||++++. +.+.+.+ ...+.++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 589999999999999999999999999999999994 4444434 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
+++|+ +++.+.+++|.++||+||++|..++++++.++++|.+|+|+|||||+.+|..|+ +||+||+++.+++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+|.+ ++|+|+.|+|+.+|++||.+..+.+++++|++.++++.| +|++.+.+++ +.+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999977 699999999999999999999999999999999999999 9999999998 5778899999999
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
.+.+..+ +|.|+|.++++.||++ ++.++|+++|+|+|+.+.+ .+.|
T Consensus 220 ~~~m~~~-~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~-~~ly 265 (286)
T COG2084 220 GPRMLEG-DFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA-AELY 265 (286)
T ss_pred cchhhcC-CCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH-HHHH
Confidence 8877765 4999999999999997 9999999999999998764 3444
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.4e-45 Score=363.12 Aligned_cols=207 Identities=35% Similarity=0.588 Sum_probs=184.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|||||+|.||.+||.+|+++|++|++|||++++++++.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999998876543 456789999987643469999999998889
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHHHHh
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++++++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNV 225 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g-~i~~~~i~~v 225 (487)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| ++|++++.++
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 621 24799999999999999999999999999999998888765 3555555544
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=1.9e-44 Score=341.22 Aligned_cols=262 Identities=22% Similarity=0.340 Sum_probs=242.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++++|||||+|.||.+|+.+|.++||.|++|||+.+++++|.+.|. .++++|.|+++. +|+||+|||++.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~ 103 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPK 103 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChH
Confidence 3679999999999999999999999999999999999999998774 578999999998 999999999999
Q ss_pred hHHHHH---HHHhhcccCCCEE-EecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 86 PVDETI---KTLSAYMEKGDCI-IDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 86 ~v~~vl---~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
++++++ .+++..+++|... ||.||+.|..++++.+.+..++..|+|+|||||..+|++|. +||+|||++.++++.
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~ 183 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAAS 183 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHH
Confidence 999999 3566677788877 99999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHh
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIE 240 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~ 240 (487)
++|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ +.|...|+.+.
T Consensus 184 ~~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~ 252 (327)
T KOG0409|consen 184 PVFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFY 252 (327)
T ss_pred HHHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHh
Confidence 999999976 699999999999999999999999999999999999999 9999999998 56888899999
Q ss_pred hhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 241 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 241 ~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
...+.+.++ +|.|+|.++++.||++ ++..+|.+.++|+|+.+.| .+.|
T Consensus 253 ~~~p~m~k~-dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA-~qly 300 (327)
T KOG0409|consen 253 NPVPGMLKG-DYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA-HQLY 300 (327)
T ss_pred CcCchhhcC-CCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH-HHHH
Confidence 888877765 4999999999999997 9999999999999998766 3444
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=4.2e-41 Score=333.20 Aligned_cols=261 Identities=23% Similarity=0.336 Sum_probs=233.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|||||||+|+||.+||++|.++||+|.+|||++. .+++.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 4799999999999999999999999999999975 45554432 4567889998887 99999999999889
Q ss_pred HHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 88 DETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 88 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 99883 46777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhc
Q 011394 164 LKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITA 243 (487)
Q Consensus 164 ~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~ 243 (487)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++...
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 599999999999999999999999999999999999999 9999999988 56777899999888
Q ss_pred cccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhh
Q 011394 244 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLS 298 (487)
Q Consensus 244 ~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s 298 (487)
+.+..+ +|.++|.++.+.||+. ++++.|++.|+|+|+...+ .+.|..
T Consensus 219 ~~~~~~-~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~ 265 (292)
T PRK15059 219 ERMIKR-TFNPGFKIALHQKDLN------LALQSAKALALNLPNTATC-QELFNT 265 (292)
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 766654 5889999999999997 9999999999999987754 555544
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=4.4e-40 Score=327.24 Aligned_cols=264 Identities=20% Similarity=0.259 Sum_probs=232.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+||||||+|.||.+||.+|+++||+|++|||++++++++.+.+ ...+.++.++++. +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~ 70 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDL 70 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHH
Confidence 45899999999999999999999999999999999998887654 3467788888887 9999999999877
Q ss_pred HHHHHH---HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETIK---TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++. ++.+.+++|.++||+||..|..++++.+.+.++|+.|+|+||+|++..+..|. ++|+||+++++++++|+
T Consensus 71 ~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~ 150 (296)
T PRK15461 71 VRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPI 150 (296)
T ss_pred HHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHH
Confidence 888873 56777889999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.+|.+ ++|+|+.|+|+.+|+++|.+...++++++|++.++++.| +|++.+.+++. .+...++.+...
T Consensus 151 l~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~ 219 (296)
T PRK15461 151 LMAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTT 219 (296)
T ss_pred HHHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHcc
Confidence 9999976 599999999999999999999999999999999999999 99999999984 444445555444
Q ss_pred c-cccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 243 A-DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 243 ~-~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
. +.+.. ++|.++|.++.+.||++ ++.+.|.++|+|+|+...+ .++|..+
T Consensus 220 ~~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 269 (296)
T PRK15461 220 WPNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQA 269 (296)
T ss_pred ccchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 3 34544 35889999999999997 9999999999999987754 6666444
No 16
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.5e-38 Score=366.74 Aligned_cols=261 Identities=16% Similarity=0.244 Sum_probs=238.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
..+|||||+|.||.+||++|+++||+|.+|||++++++++.+.+ ...++|+.|++++ ||+||+|||++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 45899999999999999999999999999999999999998765 3578899999998 9999999999999
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELG--LLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCeEEE-eCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhH
Q 011394 161 DILLKVAAQVPDSGPCVTY-VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLI 239 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~-~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~ 239 (487)
|+|+.+|.+ +++ +|+.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+.++|+++
T Consensus 154 p~l~~~g~~-------i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQK-------LYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCc-------eEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 999999976 465 599999999999999999999999999999999999 9999999998 5677889999
Q ss_pred hhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHH
Q 011394 240 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARF 296 (487)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~ 296 (487)
+...+.+..+ +|.++|.++.+.||++ ++++.|.++|+|+|+...+ .++|
T Consensus 223 ~~~~~~~~~~-d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~ 271 (1378)
T PLN02858 223 KNHVPLLLKD-DYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQL 271 (1378)
T ss_pred HhhhhHhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHH
Confidence 8887766654 5889999999999997 9999999999999987654 4433
No 17
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=1.2e-38 Score=316.10 Aligned_cols=259 Identities=21% Similarity=0.274 Sum_probs=230.5
Q ss_pred EEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHH
Q 011394 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETI 91 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl 91 (487)
|||+|.||.+||++|+++||+|++|||++++++.+.+.+ ...+.++.+++++ +|+||+|||++.+++.++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 699999999999999999999999999999998887643 4567789999887 999999999988889998
Q ss_pred ---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHHHHh
Q 011394 92 ---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILLKVA 167 (487)
Q Consensus 92 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~~ig 167 (487)
+++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+||+.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 688888899999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc--
Q 011394 168 AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-- 245 (487)
Q Consensus 168 ~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~-- 245 (487)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||.+....+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 699999999999999999999999999999999999999 9999999998 4566677776655431
Q ss_pred -----cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 246 -----FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 246 -----l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
+.. ++|.++|.++.+.||++ ++.+.|.+.|+|+|+...+ .+.+..+
T Consensus 220 ~~~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 220 VMPQAPAS-NGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred cccccccc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 122 45888999999999987 9999999999999987654 5655443
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=9.3e-37 Score=304.01 Aligned_cols=264 Identities=20% Similarity=0.282 Sum_probs=234.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|+|||||+|.||.++|.+|++.|++|.+|||++++.+++.+.+ ...++++++++++ +|+||+|+|+..+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999988776543 4567788888877 9999999998888
Q ss_pred HHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHH
Q 011394 87 VDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDI 162 (487)
Q Consensus 87 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~l 162 (487)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++||+|++..+..|. .+++||+++.++.++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999989999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhh
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEIT 242 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~ 242 (487)
|+.++.+ ++++|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ ..+.+.|++++..
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 589999999999999999999999999999999999999 9999998887 5677778888877
Q ss_pred ccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 243 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 243 ~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.+.+..+ +|.++|.++...||++ .+++.|++.|+|+|+...+ .+++..+
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6666544 5788999999999986 8999999999999988765 5666443
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.3e-36 Score=302.18 Aligned_cols=262 Identities=21% Similarity=0.322 Sum_probs=233.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
||||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...++++.+++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999998877644 3456788888887 999999999987888
Q ss_pred HHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHHH
Q 011394 89 ETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDILL 164 (487)
Q Consensus 89 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll~ 164 (487)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 456777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
.++.+ ++++|+.|.|+.+|+++|.+....+++++|++.++++.| +|++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 589999999999999999999999999999999999999 9999999998 456667898888776
Q ss_pred ccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 245 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 245 ~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
.+..+ +|.++|.++.+.||+. ++++.|.+.|+++|+..++ .+++..+
T Consensus 220 ~~~~~-~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 220 RVIDR-TFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 66554 5788999999999997 8999999999999988765 5665444
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=3.5e-36 Score=347.22 Aligned_cols=269 Identities=18% Similarity=0.243 Sum_probs=240.1
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+.+.+++|||||+|+||.+||.+|+++||+|++|||++++++.+.+.+ ...+.++++++++ +|+||+|||
T Consensus 320 ~~~~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~ 389 (1378)
T PLN02858 320 QAKPVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVA 389 (1378)
T ss_pred cccCCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecC
Confidence 345568999999999999999999999999999999999999887654 3457899999987 999999999
Q ss_pred CChhHHHHH---HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEecCCCCChhhhcCCC-ccccCCCHHHH
Q 011394 83 AGAPVDETI---KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAY 156 (487)
Q Consensus 83 ~~~~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~ 156 (487)
++.++++++ .++.+.+.+|++|||+||+.|..++++.+.+.+ +|++|+++||+||+.++..|. ++|+||+++.+
T Consensus 390 ~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~ 469 (1378)
T PLN02858 390 NEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEAL 469 (1378)
T ss_pred ChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHH
Confidence 999999998 457788889999999999999999999999988 899999999999999999999 99999999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEe-CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcch
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTYV-SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELL 235 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~~-G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~ 235 (487)
++++|+|+.++.+ ++++ |+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ +.+.++
T Consensus 470 ~~~~plL~~lg~~-------i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~ 538 (1378)
T PLN02858 470 KSAGSVLSALSEK-------LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGT 538 (1378)
T ss_pred HHHHHHHHHHhCc-------EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhhccc
Confidence 9999999999976 4664 67999999999999999999999999999999999 9999999998 456678
Q ss_pred hhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhcc
Q 011394 236 SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGL 300 (487)
Q Consensus 236 s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~ 300 (487)
||+++...+.+..+ +|.++|.++.+.||++ ++++.|.++|+|+|+...+ .++|..+.
T Consensus 539 s~~~~~~~~~~l~~-d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a~ 595 (1378)
T PLN02858 539 SWMFENRVPHMLDN-DYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTVA-HQLFLAGS 595 (1378)
T ss_pred ChhhhhccchhhcC-CCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 88888777666554 5889999999999997 9999999999999987654 66665554
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.98 E-value=5.8e-32 Score=245.72 Aligned_cols=153 Identities=27% Similarity=0.456 Sum_probs=138.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.++|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 68999999999999999999999999999999999999998765 5689999999998 9999999999999
Q ss_pred HHHHHHH--HhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccCCCHHHHHHHHHHH
Q 011394 87 VDETIKT--LSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPGGSFEAYKYIEDIL 163 (487)
Q Consensus 87 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~~ll 163 (487)
+++++.+ +.+.+.+|++|||+||..|..++++.+.+.++|++|+|+||+||+..+.+|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhcc
Q 011394 164 LKVAAQ 169 (487)
Q Consensus 164 ~~ig~~ 169 (487)
+.++.+
T Consensus 151 ~~~~~~ 156 (163)
T PF03446_consen 151 EAMGKN 156 (163)
T ss_dssp HHHEEE
T ss_pred HHHhCC
Confidence 999986
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=1.6e-28 Score=255.38 Aligned_cols=250 Identities=18% Similarity=0.189 Sum_probs=202.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||||||+|+||.++|.+|+++||+|++||+++++++.+.+.. ...+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 5899999999999999999999999999999999998876411 0001 25667788887776
Q ss_pred CCcEEEEecCCChh---------HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCe-EEecCCCCChhh
Q 011394 73 KPRVIIMLVKAGAP---------VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLL-YLGMGVSGGEEG 140 (487)
Q Consensus 73 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~i~~pvsgg~~~ 140 (487)
+|+||+|||++.. +..+++++.+.+.+|++||++||..|.+++++...+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998743 777788898999999999999999999998887655444 443 567788888877
Q ss_pred hcCCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVA-AQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~ig-~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+.+|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765 5788999999999999999997 33 4888999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCch--hHHhhhhccCCCCchHHHHHHHHHcCCCchhH
Q 011394 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~--~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~ 288 (487)
|++.| +|++++.+++. .+ +.+.. ..|.|+| -...+.||+. +.+..|.++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 1244443 3345677765 7889999999999998
Q ss_pred HHH
Q 011394 289 ASS 291 (487)
Q Consensus 289 ~~a 291 (487)
.++
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 765
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.94 E-value=4.5e-25 Score=228.86 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=168.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh------------hcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN------------SIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~------------~l~~a 74 (487)
+|||+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++.+
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccccC
Confidence 579999999999999999999999999999999999987542110 00 0112222211 01249
Q ss_pred cEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC--------------eEEe
Q 011394 75 RVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL--------------LYLG 131 (487)
Q Consensus 75 dvIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~i~ 131 (487)
|+||+|||++ ..+..+++++.+++++|++||+.||+.|.+++++...+.+++. +++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9999999987 5788888999999999999999999999999999887766432 3456
Q ss_pred cC--CCCChhhhcCCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHH
Q 011394 132 MG--VSGGEEGARHGP-SLMPGG-SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEA 207 (487)
Q Consensus 132 ~p--vsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea 207 (487)
+| +.+|...+..+. ..++|| +++.+++++++|+.++.. ++++++.++|+.+|+++|.+.+..+++++|+
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEG-------ECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCC-------CeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 666655555555 566788 999999999999999865 4788999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHH
Q 011394 208 YDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 208 ~~l~~~~g~i~~~~i~~v~ 226 (487)
..+|++.| +|++++.+.+
T Consensus 230 ~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHhC-CCHHHHHHHh
Confidence 99999999 9999998886
No 24
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.94 E-value=5.8e-25 Score=228.00 Aligned_cols=251 Identities=12% Similarity=0.164 Sum_probs=186.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh------------cCCCCccccCCHHHHHhhc
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK------------EGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~------------~g~~~~~~~~s~~e~~~~l 71 (487)
+...|||||||+|+||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++..+++ .+.++.
T Consensus 3 ~~~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~-~~~~~~- 76 (425)
T PRK15182 3 GIDEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSE-IEKIKE- 76 (425)
T ss_pred CCCCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeC-HHHHcC-
Confidence 4455799999999999999999887 699999999999999987 3321 00 1233333 345555
Q ss_pred CCCcEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--cCCeEEe--------c
Q 011394 72 QKPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--LGLLYLG--------M 132 (487)
Q Consensus 72 ~~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~--------~ 132 (487)
+|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+...+ .|..+.+ .
T Consensus 77 --advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 77 --CNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred --CCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence 99999999988 3344445788899999999999999999999976554433 2554433 4
Q ss_pred CCCCChhhhcCCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 011394 133 GVSGGEEGARHGP--SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 210 (487)
Q Consensus 133 pvsgg~~~a~~G~--~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l 210 (487)
++.+|......+. .++.|++++..+.++++++.+...- .+++++.++|+.+|+++|.+.+..+++++|+..+
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAG------TYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred cCCCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcC------cEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655444443 4677778888899999999997321 4788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 211 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 211 ~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
|++.| +|.+++.+++ +. ++.+.. ...+- +++.++..... ..+..+.++|++++++.+
T Consensus 229 ae~~G-iD~~~v~~a~---~~----~~~~~~----~~pG~-vGG~ClpkD~~----------~L~~~a~~~g~~~~l~~~ 285 (425)
T PRK15182 229 FNRLN-IDTEAVLRAA---GS----KWNFLP----FRPGL-VGGHCIGVDPY----------YLTHKSQGIGYYPEIILA 285 (425)
T ss_pred HHHhC-cCHHHHHHHh---cC----CCCccc----CCCCc-cccccccccHH----------HHHHHHHhcCCCcHHHHH
Confidence 99999 9999998885 21 122111 12222 55655544321 455788889999888876
Q ss_pred H
Q 011394 291 S 291 (487)
Q Consensus 291 a 291 (487)
+
T Consensus 286 a 286 (425)
T PRK15182 286 G 286 (425)
T ss_pred H
Confidence 5
No 25
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=1.5e-24 Score=222.33 Aligned_cols=244 Identities=15% Similarity=0.144 Sum_probs=180.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----------cCCCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----------EGDLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----------~g~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+.+.... ....++..+.+++++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 589999999999999987775 99999999999999888752100 000023344456777766 999
Q ss_pred EEEecCCC----------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-
Q 011394 77 IIMLVKAG----------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 77 Ii~~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~- 145 (487)
||+|||++ ..++++++++.. +.+|++||+.||+.|.+++++.+.+.+.++.| +|+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99999987 577888888877 68999999999999999999988877666555 344445443
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 011394 146 --------SLMPGGSFEAYKYIEDILLK--VAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 146 --------~i~~gg~~~~~~~v~~ll~~--ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g 215 (487)
.++.|++++..+++.++|.. ++..+ .+++++.++|+++|+++|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57888888888999998854 44332 346899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 216 KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 216 ~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
+|.+++.+++. ... ++....+..+-.|++.++..... ++ .+...++++|++.++
T Consensus 223 -iD~~eV~~a~~---~d~------ri~~~~l~pG~G~GG~ClpkD~~-----------~L-~~~~~~~~~~l~~~~ 276 (388)
T PRK15057 223 -LNTRQIIEGVC---LDP------RIGNHYNNPSFGYGGYCLPKDTK-----------QL-LANYQSVPNNLISAI 276 (388)
T ss_pred -cCHHHHHHHhc---CCC------CCCCccCCCCCCCCCcChhhhHH-----------HH-HHhccCCCcHHHHHH
Confidence 99999998872 211 11122234444466766655432 22 122255677777654
No 26
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=1.1e-24 Score=220.22 Aligned_cols=289 Identities=13% Similarity=0.058 Sum_probs=202.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C---CCCccccCCHHHHHhhcCCCcEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G---DLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g---~~~~~~~~s~~e~~~~l~~advIi 78 (487)
.+|||+|||+|.||.+||.+|+++||+|++|+|++++.+.+.+..... + ..++..+++++++++. +|+||
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi 79 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAV 79 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEE
Confidence 367999999999999999999999999999999999888877542110 0 0014456788887776 99999
Q ss_pred EecCCChhHHHHHHHHhhcccCCCEEEecCCC-Cchh--HHHHHHHHHH---cCCeEEecCCCCChhhhcCCC-ccccCC
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-WYEN--TERREKAMAE---LGLLYLGMGVSGGEEGARHGP-SLMPGG 151 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~i~~pvsgg~~~a~~G~-~i~~gg 151 (487)
+|+|+. ++++++ +.+.++.++|+++++ .|.. .+.+.+.+.+ +++.+++.|......+...+. .+++|+
T Consensus 80 ~~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~ 154 (328)
T PRK14618 80 VAVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASP 154 (328)
T ss_pred EECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeC
Confidence 999987 566655 445678899999995 4443 5556666655 667777777654444444455 678899
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCC-eEEEeCC---------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 152 SFEAYKYIEDILLKVAAQVPDSGP-CVTYVSK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~~~~~~-~~~~~G~---------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
+++.+++++++|+..+.++...+. .-.++|. .|.+..+|+.+|.....+.+.++|++.++++.| +++++
T Consensus 155 ~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~ 233 (328)
T PRK14618 155 EPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEAT 233 (328)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 999999999999988865300000 0003443 589999999999999999999999999999999 99999
Q ss_pred HHHHHHhhcc-CcchhhhHhhhc--cccccc---cCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHH
Q 011394 222 LQNVFTEWNK-GELLSFLIEITA--DIFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDAR 295 (487)
Q Consensus 222 i~~v~~~~~~-~~~~s~~~~~~~--~~l~~~---~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r 295 (487)
+.++....+- +...|+..+.+. ..+..+ +.+.++|.+....+|+. .+.+.+.++++++|++..+ .+
T Consensus 234 ~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~~--~~ 305 (328)
T PRK14618 234 FYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEAV--AR 305 (328)
T ss_pred hhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHHH--HH
Confidence 9887521000 234455555442 123332 12344455566666664 8889999999999998753 34
Q ss_pred HhhccchHHHHHHHhh
Q 011394 296 FLSGLKEERVEAAKVF 311 (487)
Q Consensus 296 ~~s~~~~~r~~~~~~~ 311 (487)
.+...++.......++
T Consensus 306 ~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 306 VARGGWDPLAGLRSLM 321 (328)
T ss_pred HHhCCCCHHHHHHHHh
Confidence 4444445555554444
No 27
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.92 E-value=3.5e-24 Score=216.24 Aligned_cols=282 Identities=14% Similarity=0.086 Sum_probs=190.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
||||+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... . .++..+.+++++++. +|+||+
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILV 77 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEE
Confidence 579999999999999999999999999999999999888876531100 0 024456778777766 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecC-CCCchhHHHHHHHHHHc-----CCeEEecCCCCChhhhcCCC-ccccCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG-NEWYENTERREKAMAEL-----GLLYLGMGVSGGEEGARHGP-SLMPGGS 152 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~i~~pvsgg~~~a~~G~-~i~~gg~ 152 (487)
|||+. +++++++++.+.+.++++||+++ +..+...++..+.+.+. ...++..|..+....+..+. .++.|++
T Consensus 78 ~v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 78 AVPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred eCCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 99984 78999999999888999999998 44444444444555443 34456667665544443444 5567779
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCC-----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-----------------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g 215 (487)
.+.++++.++|+..+.++ .+... .|.+..+|+.+|.+.....+.++|++.++++.|
T Consensus 157 ~~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 157 EELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred HHHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999877542 22211 388888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhcc-CcchhhhHhhhc--cccccccCCC-----CchhHHhhhhccCCCCchHHHHHHHHHcCCCchh
Q 011394 216 KLTNEELQNVFTEWNK-GELLSFLIEITA--DIFGIKDDKG-----DGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 287 (487)
Q Consensus 216 ~i~~~~i~~v~~~~~~-~~~~s~~~~~~~--~~l~~~~~~~-----~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~ 287 (487)
+|++.+.++...-+. ....|+..+.+. ..+..+..+. .+ .+....+|++ .+++.|.++|+|+|+
T Consensus 230 -~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~P~ 301 (325)
T PRK00094 230 -ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEMPI 301 (325)
T ss_pred -CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCCCH
Confidence 999998776421000 001111111111 1111111000 00 1122234443 788999999999999
Q ss_pred HHHHHHHHHhhccchHHHHHHH
Q 011394 288 IASSLDARFLSGLKEERVEAAK 309 (487)
Q Consensus 288 ~~~a~~~r~~s~~~~~r~~~~~ 309 (487)
..++ .+.+ ...++.+..+..
T Consensus 302 ~~~~-~~~~-~~~~~~~~~~~~ 321 (325)
T PRK00094 302 TEAV-YAVL-YEGKDPREAVED 321 (325)
T ss_pred HHHH-HHHH-cCCCCHHHHHHH
Confidence 8754 4443 444545544443
No 28
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.90 E-value=2.6e-22 Score=200.95 Aligned_cols=251 Identities=10% Similarity=0.063 Sum_probs=181.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~~ 69 (487)
+|+|+|||+|.||.+||.+|+++|++|++||++++..+...+.. ...+. .++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 46899999999999999999999999999999998776543210 00000 02356778888777
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccc
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLM 148 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~ 148 (487)
. +|+|++|+|+..+++..+ ..+.+.. +++++|.+||+ +....++++.+...+..+.+.|+.+... .....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~---~~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYL---IPVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCccc---CceEEE
Confidence 6 999999999876555544 5555544 55566665554 4456667777666677788899975321 112335
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011394 149 PG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 149 ~g---g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
++ +++++++.++++++.+|++ ++++++.+.|+ +.|.+ ..++++|++.++++.| +|+++++++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~----i~nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF----VLNRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH----HHHHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999976 58999888887 33443 4578899999999988 999999999
Q ss_pred HHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHH
Q 011394 226 FTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSL 292 (487)
Q Consensus 226 ~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~ 292 (487)
+ ..+.+.+|.+ ..+.... +.|+++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 7 3455556554 3444333 34667788888887764 77788888999999886544
No 29
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.89 E-value=7.1e-24 Score=204.63 Aligned_cols=118 Identities=14% Similarity=0.287 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChhHH
Q 011394 327 QKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFA 406 (487)
Q Consensus 327 ~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~~~ 406 (487)
||||||||||||||+||.++|+|++|+...+..+ .++.+|++.||.| .++||||+++.++|++.+..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997543222 5777888889988 689999999999999877566799999999
Q ss_pred HHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 407 KEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 407 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
...++++| +|++++|+++|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999996 55556665543
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=3.9e-22 Score=199.69 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=180.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.|||+|||+|.||.+||.+|+++||+|++|||++. .++++++++ +|+||+++|+. +
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 46899999999999999999999999999999853 246677766 99999999985 8
Q ss_pred HHHHHHHHhhc-ccCCCEEEecCC-CCchhHHHHHHHHHHcCCeEEecCCC--CChhhhc---C--CC-ccccCCCHHHH
Q 011394 87 VDETIKTLSAY-MEKGDCIIDGGN-EWYENTERREKAMAELGLLYLGMGVS--GGEEGAR---H--GP-SLMPGGSFEAY 156 (487)
Q Consensus 87 v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~i~~pvs--gg~~~a~---~--G~-~i~~gg~~~~~ 156 (487)
++.+++++.++ +.++.+||++++ ..|.......+.+.. +|.+.|+. +|+..+. . +. .+++|++.+.+
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778999999987 444444434444433 24456663 4443332 2 23 67889999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEeCC-----------------chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTYVSK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~~G~-----------------~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
+.++++|+..+.+ +++.++ .|.+...|+.+|.....+++++.|++.++++.| +++
T Consensus 137 ~~v~~ll~~~~~~-------~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~ 208 (308)
T PRK14619 137 ETVQQIFSSERFR-------VYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQT 208 (308)
T ss_pred HHHHHHhCCCcEE-------EEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 9999999988765 343333 344555669999999999999999999999999 999
Q ss_pred HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHh------hhhccCCCCch----HHHHHHHHHcCCCchhHH
Q 011394 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDK------VLDKTGMKGTG----KWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 220 ~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~------i~~~~~~kgtg----~~~~~~a~~~gv~~P~~~ 289 (487)
+.+.++ .|.+++++. ...+..+ .|..+|.+.. +.+...++.+| +.+.+.++++|+++|++.
T Consensus 209 ~t~~~~-----~g~gd~~~t---~~~~~~r-n~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 209 ETFYGL-----SGLGDLLAT---CTSPLSR-NYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccccc-----cchhhhhee---ecCCCCc-cHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 888764 244444441 1111121 2333333333 23333333333 367788999999999987
Q ss_pred HHHHHHHhhccchHHHHHHHhhc
Q 011394 290 SSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 290 ~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
++ .+.+....+.+.....++.
T Consensus 280 ~v--~~i~~~~~~~~~~~~~l~~ 300 (308)
T PRK14619 280 QV--YRLLQGEITPQQALEELME 300 (308)
T ss_pred HH--HHHHcCCCCHHHHHHHHHc
Confidence 53 4444555566666666654
No 31
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=8.8e-23 Score=199.73 Aligned_cols=122 Identities=13% Similarity=0.224 Sum_probs=107.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhC-CCCCCCcC
Q 011394 323 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRN-ADLANLLV 401 (487)
Q Consensus 323 ~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~-~~~~~ll~ 401 (487)
++++|||||||||||||+.||.++|.|++|+..-...+ .++++||.-||+| .+.|||++++.++|+.. ++..++|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 56899999999999999999999999999998654444 5666777779999 99999999999999975 44456999
Q ss_pred ChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 402 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
|.+++.+.||+++ ||+++.|+++|+|+|.|.+|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999996 88888877653
No 32
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2.3e-19 Score=177.76 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=194.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|++|...+..|++.||+|+++|.+++|++.+.+.. ...| ++..+++.+++++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 7999999999999999999999999999999999987765321 1111 47888999998887
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~ 143 (487)
+|++|+|||++. .++.+.+.+.+.++..++||.-||+.+.++++..+.+.+....- +-.|...|+.-++
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLRE 154 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLRE 154 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcC
Confidence 999999998874 46777889999998889999999999999999888776542110 2233334455555
Q ss_pred CC---------ccccCCCH-HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011394 144 GP---------SLMPGGSF-EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 144 G~---------~i~~gg~~-~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~ 213 (487)
|. .+++|... .+.+.+++|++.+..+ .+.+.+...-.++++|+..|++.+.-+.+++|.-.+|++
T Consensus 155 G~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 155 GSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred cchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 46777744 4678888888776432 122444556899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHH
Q 011394 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSL 292 (487)
Q Consensus 214 ~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~ 292 (487)
.| +|..++.+.+. .=-+|....+..+-.|+++++.+.+. -.+..|.++|.+.+++.+++
T Consensus 230 ~g-~D~~~V~~gIG---------lD~RIG~~fl~aG~GyGGsCfPKD~~----------AL~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 230 VG-ADVKQVAEGIG---------LDPRIGNHFLNAGFGYGGSCFPKDTK----------ALIANAEELGYDPNLLEAVV 288 (414)
T ss_pred hC-CCHHHHHHHcC---------CCchhhHhhCCCCCCCCCcCCcHhHH----------HHHHHHHhcCCchHHHHHHH
Confidence 99 99999888761 11133445566666788888887664 35678999999999888653
No 33
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.85 E-value=6.8e-20 Score=184.51 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=157.9
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHH-----HHHHHhhhhcCCCCccccC
Q 011394 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKKEGDLPLFGFR 62 (487)
Q Consensus 8 ~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~l~~~~~~~g~~~~~~~~ 62 (487)
|||.|.|+|+- |.+||.+|+++||+|++|||++++. +.+.+. ++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 68999999974 8889999999999999999998743 333322 356677
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHH----HcCCeEE-ecCCCC
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMA----ELGLLYL-GMGVSG 136 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~i-~~pvsg 136 (487)
++.+++++ +|+||+|+|++.+++.+++++.+.++++.+|||+||+.|... +.+.+.+. ..|+++. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999886689999999999999999999999998876 45555553 3366555 445555
Q ss_pred ChhhhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHH
Q 011394 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (487)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~ 208 (487)
++.+.. .++.| ++++.+++++++|+.+|.+ +++++ .|.++.+|+++|.+.+..++.++|++
T Consensus 151 ae~g~l---~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~ 219 (342)
T PRK12557 151 TPQHGH---YVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYY 219 (342)
T ss_pred cccchh---eEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543222 44444 4899999999999999976 46666 59999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 011394 209 DVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 209 ~l~~~~g~i~~~~i~~v~ 226 (487)
.++++.| .++.++.+-+
T Consensus 220 ~l~~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 220 SVGTKII-KAPKEMIEKQ 236 (342)
T ss_pred HHHHHhC-CCHHHHHHHH
Confidence 9999999 8888776644
No 34
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.85 E-value=2.9e-19 Score=186.97 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=187.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhc---C---------CCCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKE---G---------DLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~---g---------~~~~~~~~s~~e~~~~l~ 72 (487)
||||+|||+|++|.++|..|+++| ++|+++|+++++++.+.+..... + +.++..+++.++.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 579999999999999999999985 78999999999998875432100 0 0025566777776766
Q ss_pred CCcEEEEecCCCh--------------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--C--CeEEecCC
Q 011394 73 KPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--G--LLYLGMGV 134 (487)
Q Consensus 73 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~i~~pv 134 (487)
+|++|+|||++. .++.+++.+.+.++++++||..||..|.+++++...+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 4677788999999999999999999999999988877653 3 44556675
Q ss_pred CCChhhhcCC---C-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 135 SGGEEGARHG---P-SLMPGGS-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 135 sgg~~~a~~G---~-~i~~gg~-----~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
+-.+-.+... + .+++||. +++.+.++++++.+.... .+.+.+.-+++++|++.|.+.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~------~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEE------RIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCC------CEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444333332 2 4666773 335788888998886321 35567789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCC-
Q 011394 206 EAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA- 284 (487)
Q Consensus 206 Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~- 284 (487)
|...+|++.| +|..++.+.+. ... . +....+..+-.+++.++..... ..+..|.++|++
T Consensus 232 Ela~lce~~g-iD~~eV~~~~~---~d~---r---ig~~~l~PG~G~GG~ClpkD~~----------~L~~~a~~~g~~~ 291 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAVG---KDS---R---IGPKFLNASVGFGGSCFQKDIL----------NLVYICECNGLPE 291 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHhC---CCC---c---CCCCCCCCCCCCCCcchhhhHH----------HHHHHHHHcCCch
Confidence 9999999999 99999988762 211 0 1112334443466666654432 455778888987
Q ss_pred -chhHHHH
Q 011394 285 -APTIASS 291 (487)
Q Consensus 285 -~P~~~~a 291 (487)
.+++.++
T Consensus 292 ~~~l~~~~ 299 (473)
T PLN02353 292 VAEYWKQV 299 (473)
T ss_pred HHHHHHHH
Confidence 6666654
No 35
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.4e-21 Score=188.30 Aligned_cols=122 Identities=11% Similarity=0.167 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCC
Q 011394 323 AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 402 (487)
Q Consensus 323 ~~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~ 402 (487)
++++|||||||||+|||+.||.++|.|++|+.+.+..+ .++++++.-||.| .+.|+|++++.++|+-+++....|+|
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 56899999999999999999999999999999776666 7888899999999 99999999999999876555668999
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++.+.+.+|+++ +|+|..|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999996 78888887765
No 36
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=4.3e-19 Score=174.99 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=163.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh---------------hhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~---------------~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
++|||||||++|.++|..++++|++|+++|.|+.+++.+.+.. ...| +++++++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 7999999999999999999999999999999999987765311 1111 4667777777653
Q ss_pred CCcEEEEecCCCh---------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc--CCeE-EecCCCCChhh
Q 011394 73 KPRVIIMLVKAGA---------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL--GLLY-LGMGVSGGEEG 140 (487)
Q Consensus 73 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-i~~pvsgg~~~ 140 (487)
||++|+|||++- .+++..+.+.+.|++|++||--||+.|.+|+++...+.+. |..| .|-.+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 999999999872 4566778999999999999999999999999998877653 3333 12222233343
Q ss_pred hcCCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 141 ARHGP---------SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 141 a~~G~---------~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
...|. -++.|-+++..+.+..+++.+-.. +..+.+.-.++++|+..|.+...++++++|...+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33332 344555888889999999998764 47778889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011394 212 KSVGKLTNEELQNVF 226 (487)
Q Consensus 212 ~~~g~i~~~~i~~v~ 226 (487)
.+.| +|..++.++.
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999888876
No 37
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.81 E-value=2.8e-18 Score=168.40 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=163.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEE-eCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||||||+|.||.+|+++|.++|+ +|++| ||++++.+.+.+.+ +..+.++.+++++ +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLG-------VKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcC-------CEEeCChHHHHhc---CCEEEEEEC
Confidence 689999999999999999999998 89999 99999988776532 5567788888876 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCCCHHHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGGSFEAYKYIE 160 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg~~~~~~~v~ 160 (487)
+ .++++++.++.+.+.++++||+..++.+.. .+.+.+.. . +++ .+|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~--~l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLA--DLQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHH--HHHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 4 589999999988888999988876554332 23332221 1 566 478766554332222 233455889999999
Q ss_pred HHHHHHhccCCCCCCeEEEe---------CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhcc
Q 011394 161 DILLKVAAQVPDSGPCVTYV---------SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNK 231 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~---------G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~ 231 (487)
++|+.+|. + +++ +..|+|.. +.+.+++.++|+ +.+.| +|+++..+++..
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~~--- 203 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAAQ--- 203 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH---
Confidence 99999996 3 565 44577664 467788888888 77788 999999998743
Q ss_pred CcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 232 GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 232 ~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
+...++.+ +... ...+.-+.+.+ ...-||..-.+....+.|++-.+..
T Consensus 204 ~~~gs~~l------~~~~-~~~~~~l~~~v---~spgG~t~~~l~~l~~~g~~~~~~~ 251 (266)
T PLN02688 204 TVLGAAKM------VLET-GKHPGQLKDMV---TSPGGTTIAGVHELEKGGFRAALMN 251 (266)
T ss_pred HHHHHHHH------HHhc-CCCHHHHHHhC---CCCchHHHHHHHHHHHCChHHHHHH
Confidence 33333322 1111 12232233333 3334555556677778888765544
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.81 E-value=9.1e-19 Score=185.91 Aligned_cols=194 Identities=16% Similarity=0.148 Sum_probs=148.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh---------------hcCCCCccccCCHHHHHhhc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------KEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------------~~g~~~~~~~~s~~e~~~~l 71 (487)
.|||||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ +++.++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 368999999999999999999999999999999998776532100 000 25677888888877
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-cccc
Q 011394 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMP 149 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~ 149 (487)
||+|++|+|+..+++..+ .++.+.++++ +||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 999999999987777654 6676666555 5667777776544 566666667778889986632 2345 5677
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 011394 150 GGS---FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 150 gg~---~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~-~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
+|+ ++.++.++++|+.+|.+ .++++. .++|.+...++.. ++|++.|+++.| +|++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~-------~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMK-------PVHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCE-------EEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 775 79999999999999976 477763 5555555556666 499999999988 999999999
Q ss_pred HH
Q 011394 226 FT 227 (487)
Q Consensus 226 ~~ 227 (487)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.80 E-value=2.3e-18 Score=170.96 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=143.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCC----------CCccccCCHHHHHhh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGD----------LPLFGFRDPESFVNS 70 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~----------~~~~~~~s~~e~~~~ 70 (487)
++|+|||+|.||.+||.+|+++|++|++||+++++++++.+. +...+. .+++.++++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 589999999999999999999999999999999998876532 110000 024456778777776
Q ss_pred cCCCcEEEEecCCChhHHHH-HHHHhhcccCCCEE-EecCCCCchhHHHHHHHH-HHcCCeEEecCCCCChhhhcCCC-c
Q 011394 71 IQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCI-IDGGNEWYENTERREKAM-AELGLLYLGMGVSGGEEGARHGP-S 146 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l-~~~g~~~i~~pvsgg~~~a~~G~-~ 146 (487)
+|+||+|+|++.+++.. +.++.+.++++.++ +++||..+....+..+.. +..|.||+ +|++++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 99999999998776644 47788888888866 788888775543332211 12478888 788664 4 5
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 147 LMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 147 i~~gg---~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
.|++| +++++++++++++.++++ ++++++ ..| ++.|.+.+ .+++|++.+.++.. .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~-------~v~v~d-~~G----f~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKE-------TVVVNE-FPG----FVTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67776 999999999999999976 478875 334 45566544 45699999998765 7899998
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=5.8e-18 Score=167.25 Aligned_cols=192 Identities=13% Similarity=0.197 Sum_probs=135.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|+||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+|||
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVilav~ 74 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFLAMK 74 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEEEeC
Confidence 69999999999999999999998 79999999864 566665532 24567788888776 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEec-CCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCCC---HHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDG-GNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGGS---FEAY 156 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg~---~~~~ 156 (487)
+. ++.+++.++.+.+.++++||++ ++..+...++ .+ ..+..++ .+|. ...+..+. +++++++ ++.+
T Consensus 75 p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~-~~~~~v~r~mPn---~~~~~~~~~t~~~~~~~~~~~~~ 146 (279)
T PRK07679 75 PK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LL-QKDVPIIRAMPN---TSAAILKSATAISPSKHATAEHI 146 (279)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---Hc-CCCCeEEEECCC---HHHHHhcccEEEeeCCCCCHHHH
Confidence 75 7888889998888889999997 5555443333 22 2233333 2232 23344343 6776664 6788
Q ss_pred HHHHHHHHHHhccCCCCCCeEEE--eCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011394 157 KYIEDILLKVAAQVPDSGPCVTY--VSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (487)
Q Consensus 157 ~~v~~ll~~ig~~~~~~~~~~~~--~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~ 228 (487)
+.++++|+.+|..+...|.. ++ ++..|+|.. +.+.++..+.|+ +.+.| +|+++..+++..
T Consensus 147 ~~v~~l~~~~G~~~~v~e~~-~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~G-l~~~~a~~~~~~ 208 (279)
T PRK07679 147 QTAKALFETIGLVSVVEEED-MHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIG-LKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHHHhCCcEEEeCHHH-hhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 99999999999643111111 14 566777774 344555555555 77888 999999999853
No 41
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=7.8e-18 Score=178.63 Aligned_cols=190 Identities=12% Similarity=0.149 Sum_probs=144.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~ 68 (487)
...+|||||+|.||.+||.+|+.+||+|++||++++++++..+.. ...|. .+++.+.+++++.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~ 85 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA 85 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC
Confidence 456899999999999999999999999999999999887742111 01100 0356778887654
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEE-EecCCCCchhHHHHHHHHH--H--cCCeEEe-cCCCCChhhh
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCI-IDGGNEWYENTERREKAMA--E--LGLLYLG-MGVSGGEEGA 141 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~--~--~g~~~i~-~pvsgg~~~a 141 (487)
+ ||+||.|||++.+++..+ .++....+++.++ .++||..+. +++..+. + .|+||++ +|++.
T Consensus 86 -~---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~----- 153 (507)
T PRK08268 86 -D---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK----- 153 (507)
T ss_pred -C---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-----
Confidence 4 999999999999998876 5566667788888 478887764 3444332 2 3899998 67762
Q ss_pred cCCCccccC---CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011394 142 RHGPSLMPG---GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 217 (487)
Q Consensus 142 ~~G~~i~~g---g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i 217 (487)
-..+++ +++++++.+.++++.+++. .+++++ +| ++.|.+.. ..++|++.++++.+ .
T Consensus 154 ---LvEvv~g~~Ts~~~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~ 213 (507)
T PRK08268 154 ---LVEVVSGLATDPAVADALYALARAWGKT-------PVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-A 213 (507)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-C
Confidence 234454 5899999999999999976 478886 45 46677654 47799999999988 9
Q ss_pred CHHHHHHHHH
Q 011394 218 TNEELQNVFT 227 (487)
Q Consensus 218 ~~~~i~~v~~ 227 (487)
+++++.+++.
T Consensus 214 ~~~~iD~al~ 223 (507)
T PRK08268 214 DPATIDAILR 223 (507)
T ss_pred CHHHHHHHHH
Confidence 9999999985
No 42
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.77 E-value=2e-17 Score=168.14 Aligned_cols=261 Identities=18% Similarity=0.175 Sum_probs=161.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCC---C-------CccccCCHHHHHhhcCCCcE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD---L-------PLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~---~-------~~~~~~s~~e~~~~l~~adv 76 (487)
||||+|||+|.||..+|..|+++||+|++|||++. .+.+.+.+..... . ++..+++. +.+.. +|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALAT---ADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccC---CCE
Confidence 57999999999999999999999999999999753 3555443321000 0 01223344 33344 999
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec--C---CCCChhhhc---CCCccc
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM--G---VSGGEEGAR---HGPSLM 148 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~--p---vsgg~~~a~---~G~~i~ 148 (487)
||+|||+. ++.++++.+.+.+.++.+|++++++. ...+.+.+.+.+ ..++.+ + +++++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999986 67888999999998999999998765 334445554432 233332 2 343333333 333 22
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHH--------------------HHHHHHHH
Q 011394 149 PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGD--------------------MQLIAEAY 208 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~--------------------~~~~~Ea~ 208 (487)
.+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 22 235568899999988765 478899999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhccC--cchhhhHhhhccccccccCCCCchhHHhhhhccCCC-------CchHHHHHHHH
Q 011394 209 DVLKSVGKLTNEELQNVFTEWNKG--ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMK-------GTGKWTVQQAA 279 (487)
Q Consensus 209 ~l~~~~g~i~~~~i~~v~~~~~~~--~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k-------gtg~~~~~~a~ 279 (487)
.++++.| ++++.+.++...+... .+.+++++...+.+...+ +... ..+++|.... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211000 112233222211111111 1100 1122221100 012 6889999
Q ss_pred HcCCCchhHHHH
Q 011394 280 DLSVAAPTIASS 291 (487)
Q Consensus 280 ~~gv~~P~~~~a 291 (487)
++|+|+|+....
T Consensus 298 ~~gv~~P~~~~~ 309 (341)
T PRK08229 298 RLGAPAPVNARL 309 (341)
T ss_pred HcCCCCcHHHHH
Confidence 999999998764
No 43
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=7.7e-19 Score=161.57 Aligned_cols=198 Identities=32% Similarity=0.500 Sum_probs=142.4
Q ss_pred HHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcC
Q 011394 64 PESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~ 143 (487)
++++...|+.-|+||----+ ..++.++.-.....+|-.++|++|+--..- .++|..+. .||++.+.+
T Consensus 77 i~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~lM----iGG~~~a~~ 143 (300)
T COG1023 77 IDDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCLM----IGGDEEAVE 143 (300)
T ss_pred HHHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceEE----ecCcHHHHH
Confidence 44555556667888776533 355556554445568889999998853221 23455443 445544433
Q ss_pred CC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 144 GP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 144 G~-~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.- .+ ++.+.+ ...| ..|+|+.|+||++|||||+|+|++|++++|.+.++++.- .|.+ +
T Consensus 144 ~~~pi--------f~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~ 202 (300)
T COG1023 144 RLEPI--------FKALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-L 202 (300)
T ss_pred HHHHH--------HHhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-H
Confidence 21 11 111111 0335 489999999999999999999999999999999999876 6643 3
Q ss_pred HHHHHhhccC-cchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccc
Q 011394 223 QNVFTEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 223 ~~v~~~~~~~-~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~ 301 (487)
.++.+.||.| ..+||+++.+...+++. .-++++.+.+...|+|+|++++|.++|+|+|+++.|+..||.|...
T Consensus 203 ~~VA~vW~hGSVIrSWLldLt~~Af~~d------~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~ 276 (300)
T COG1023 203 EAVAEVWNHGSVIRSWLLDLTAEAFKKD------PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQD 276 (300)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHhhC------CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccch
Confidence 4455558885 56899999998877642 2478899999999999999999999999999999999999988654
No 44
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.76 E-value=5.7e-18 Score=165.93 Aligned_cols=293 Identities=16% Similarity=0.180 Sum_probs=194.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++||+|||.|.+|++||..|+++||+|.+|.|+++.++++.+...+.. + .++.++++++++++. +|+|++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG---ADIIVI 77 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc---CCEEEE
Confidence 579999999999999999999999999999999999998876532210 0 046678889999887 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHHHc-C---CeEEecCCCCChhhhcCCC-cc-ccCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAEL-G---LLYLGMGVSGGEEGARHGP-SL-MPGGS 152 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~~-g---~~~i~~pvsgg~~~a~~G~-~i-~~gg~ 152 (487)
+||+. .++++++++.+++.++.++|.++.+.-..+.++ .+.+++. + +.++..|-+ ..+-++.-| .+ +.+-|
T Consensus 78 avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~-A~EVa~g~pta~~vas~d 155 (329)
T COG0240 78 AVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF-AKEVAQGLPTAVVVASND 155 (329)
T ss_pred ECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH-HHHHhcCCCcEEEEecCC
Confidence 99985 899999999889999999999998876655444 3333332 3 334444433 233444444 44 45568
Q ss_pred HHHHHHHHHHHHHH-----------hccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 153 FEAYKYIEDILLKV-----------AAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 153 ~~~~~~v~~ll~~i-----------g~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
++..++++.+|..= |.++...-|+++.++. |......+-.|+-.+.+...++|+..+....| -.+++
T Consensus 156 ~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~-Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~T 233 (329)
T COG0240 156 QEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAA-GIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPET 233 (329)
T ss_pred HHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHH-HHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcch
Confidence 88888898888651 1111011145555543 66667788899999999999999999999999 66775
Q ss_pred HHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHH----HHHHHcCCCchhHHHHHHHHHh
Q 011394 222 LQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIASSLDARFL 297 (487)
Q Consensus 222 i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~~a~~~r~~ 297 (487)
+..+- .-|.+--+..+.+++..+.+.-...+..++..+...+|.-+|..+. +.|+++++++|++++ |++ .+
T Consensus 234 ~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~-Vy~-vl 308 (329)
T COG0240 234 FMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEA-VYR-VL 308 (329)
T ss_pred hcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHH-HHH-HH
Confidence 54331 0122222222222222221111222334556666668888886555 667899999998875 444 44
Q ss_pred hccchHHHHHHHhh
Q 011394 298 SGLKEERVEAAKVF 311 (487)
Q Consensus 298 s~~~~~r~~~~~~~ 311 (487)
-..++.+.....++
T Consensus 309 ~~~~~~~~~~~~L~ 322 (329)
T COG0240 309 YEGLDPKEAIEELM 322 (329)
T ss_pred hCCCCHHHHHHHHh
Confidence 44444444444443
No 45
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.75 E-value=2.1e-17 Score=163.27 Aligned_cols=176 Identities=18% Similarity=0.268 Sum_probs=133.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|+|||+|.||.++|..|.++|++|++||++++..+++.+.+. +....+..+.+++ +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 58999999999999999999999999999999998888766542 2222233345555 99999999976 67
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCCh-hhhcCCC-cccc----------CCCHH
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGE-EGARHGP-SLMP----------GGSFE 154 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~-~~a~~G~-~i~~----------gg~~~ 154 (487)
..+++++.+.+.++.+|+|+++..+...+.. .+....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~----~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAW----EKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHH----HHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 7788999998989999999998875543332 223345887 6999876 3444333 2222 35788
Q ss_pred HHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHH
Q 011394 155 AYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLI 204 (487)
Q Consensus 155 ~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~ 204 (487)
.++.++++++.+|.+ ++++++.+....++++.|...+....++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999976 4889999999999999888766554433
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.75 E-value=2.5e-17 Score=174.23 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=139.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~~~~~~s~~e~~ 68 (487)
+.+||||||+|.||.+||.+|+++||+|++||++++++++..+.. ...|.. +++.+++++++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 346899999999999999999999999999999999887542210 011100 355677887653
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEe-cCCCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLG-MGVSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~-~pvsgg~~~a~ 142 (487)
+ ||+||.|||++.+++..+ .++....+++.+ +.++|+....+ ++++.+. ..|.||++ +|++.
T Consensus 84 -~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i~-~iA~~~~~p~r~~G~HFf~Papv~~------ 151 (503)
T TIGR02279 84 -D---AGLVIEAIVENLEVKKALFAQLEELCPADTI-IASNTSSLSIT-AIAAGLARPERVAGLHFFNPAPVMA------ 151 (503)
T ss_pred -C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCHH-HHHHhcCcccceEEEeccCccccCc------
Confidence 4 999999999998888776 456565655554 54333333333 3444442 35899998 67763
Q ss_pred CCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011394 143 HGPSLMPGG---SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (487)
Q Consensus 143 ~G~~i~~gg---~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~ 218 (487)
-..+++| ++++++.+.++++.+|+. .+++|+ +| ++.|.+. ...++|++.++++.+ .+
T Consensus 152 --LvEvv~g~~Ts~e~~~~~~~l~~~lgk~-------pv~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~ 212 (503)
T TIGR02279 152 --LVEVVSGLATAAEVAEQLYETALAWGKQ-------PVHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AA 212 (503)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCe-------eeEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CC
Confidence 2456777 899999999999999976 478886 45 2666665 457899999999988 99
Q ss_pred HHHHHHHHH
Q 011394 219 NEELQNVFT 227 (487)
Q Consensus 219 ~~~i~~v~~ 227 (487)
++++.++++
T Consensus 213 ~~~ID~al~ 221 (503)
T TIGR02279 213 PAVLDAALR 221 (503)
T ss_pred HHHHHHHHH
Confidence 999999985
No 47
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.74 E-value=1.4e-16 Score=157.16 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=141.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|||+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|+|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998887665432 12345666754 3 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCC----hhhhc----CCC-ccccC---CC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGG----EEGAR----HGP-SLMPG---GS 152 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg----~~~a~----~G~-~i~~g---g~ 152 (487)
.+..++.++.+ +.++.+|+|++++.+...+...+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67788889988 889999999988765444333222 23568877 99875 44433 465 45543 46
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNV 225 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v 225 (487)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....++++++. .+ .+.+++..+
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 78899999999999976 589999999999999998853 55555555541 24 666665444
No 48
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.73 E-value=2.2e-16 Score=156.18 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~~----------~~~~~~s~~e~~~ 69 (487)
+.+|||||+|.||.+||..|+.+|++|++||++++.++...++. ...|.. +++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 45899999999999999999999999999999999877632211 010000 3456777744 45
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcc-cCCCEEEecCCCCchhHHHHHHHHHHc--CCeEEe-cCCCCChhhhcCC
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAEL--GLLYLG-MGVSGGEEGARHG 144 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~-~pvsgg~~~a~~G 144 (487)
. +|+||.|+|++.+++..+ ..+.... +++.++++.|++.|...........++ |+||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 4 999999999998888777 4455555 789999998888877655443333444 788887 566655430
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 145 PSLMPGGSFEAYKYIEDILL-KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 145 ~~i~~gg~~~~~~~v~~ll~-~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
....++++++++.+.+++. .+++.+ +.+++ ..|. +.|.+ ....++|++.+.++.. .++++++
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pGf----i~nRi---~~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSGF----VVNAL---LVPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCCh----HHHHH---HHHHHHHHHHHHHhCC-CCHHHHH
Confidence 2345679999999999988 588763 66655 3444 44555 4555699999998766 7899998
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
No 49
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=1.2e-16 Score=162.11 Aligned_cols=300 Identities=14% Similarity=0.106 Sum_probs=187.1
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC----CC----CccccCCHHHHHhhcC
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG----DL----PLFGFRDPESFVNSIQ 72 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g----~~----~~~~~~s~~e~~~~l~ 72 (487)
|...+.+|||+|||+|.||..+|..|+++| .|.+|.|+++.++.+.+.+.... +. ++..++++++.++.
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~-- 77 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC-- 77 (341)
T ss_pred CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--
Confidence 556677899999999999999999999999 78999999999988876532100 00 23456677777665
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHHH----cCCeEEecCCCCChhhhcCCC--
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMAE----LGLLYLGMGVSGGEEGARHGP-- 145 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~~----~g~~~i~~pvsgg~~~a~~G~-- 145 (487)
+|+||+++|+. .++++++++.+.+.++.++|.++++....+.++ .+.+.+ .....+..|-.-. + ...|.
T Consensus 78 -aDlVilavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~-e-v~~g~~t 153 (341)
T PRK12439 78 -ADVVVMGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR-E-VAEGYAA 153 (341)
T ss_pred -CCEEEEEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH-H-HHcCCCe
Confidence 99999999975 799999999999988888999888876542222 222222 1122334442211 1 11344
Q ss_pred cc-ccCCCHHHHHHHHHHHHHHhccCC--CC---------CCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011394 146 SL-MPGGSFEAYKYIEDILLKVAAQVP--DS---------GPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 213 (487)
Q Consensus 146 ~i-~~gg~~~~~~~v~~ll~~ig~~~~--~~---------~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~ 213 (487)
.+ +.+.+++..+.++.+|+.-+-++. ++ -++++.++ .|....+.+..|.....+...+.|+..+++.
T Consensus 154 ~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a 232 (341)
T PRK12439 154 AAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVA 232 (341)
T ss_pred EEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 23 334466777888888865443210 00 02222222 2333334555666667788899999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHH----HHHHHcCCCchhHH
Q 011394 214 VGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIA 289 (487)
Q Consensus 214 ~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~----~~a~~~gv~~P~~~ 289 (487)
.| .+++++..+- --|.+--......++..+-+..+..+..++.+.+..++.-+|..++ +.++++++.+|++.
T Consensus 233 ~G-~~~~t~~gl~---G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~ 308 (341)
T PRK12439 233 MG-GNPETFAGLA---GMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAR 308 (341)
T ss_pred hC-CCcccccccc---hhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHH
Confidence 98 7887765431 0011111111111111111111223345666666677777785555 66789999999988
Q ss_pred HHHHHHHhhccchHHHHHHHhhcCC
Q 011394 290 SSLDARFLSGLKEERVEAAKVFKSG 314 (487)
Q Consensus 290 ~a~~~r~~s~~~~~r~~~~~~~~~~ 314 (487)
+ ..+.+...++.+..+..++..+
T Consensus 309 ~--~~~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 309 E--VDAVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred H--HHHHHhCCCCHHHHHHHHhcCC
Confidence 6 3566666677777777776543
No 50
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=5.4e-16 Score=155.68 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=135.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C-----C------CCccccCCHHHHHhhcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G-----D------LPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g-----~------~~~~~~~s~~e~~~~l~~a 74 (487)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + . -++..++++++++++ +
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---a 80 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG---A 80 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc---C
Confidence 56899999999999999999999999999999999887766521000 0 0 013456677777766 9
Q ss_pred cEEEEecCCChh-HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCCcccc
Q 011394 75 RVIIMLVKAGAP-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGPSLMP 149 (487)
Q Consensus 75 dvIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~~i~~ 149 (487)
|+||+|||+..+ ...++.++.+.++++.+|+..+++. . ..++.+.+... ++||.++|..+ ....+++
T Consensus 81 DlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~-~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~i~~ 152 (311)
T PRK06130 81 DLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL-P-ITAIAQAVTRPERFVGTHFFTPADVI------PLVEVVR 152 (311)
T ss_pred CEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC-C-HHHHHhhcCCcccEEEEccCCCCccC------ceEEEeC
Confidence 999999998754 4566777777666665554444333 2 33555544321 33443333211 1113444
Q ss_pred CC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 150 GG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 150 gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
|. +++.++.+.++|+.+|.. ++++++...|. +++|. ....++|++.++++.| ++++++.+++.
T Consensus 153 g~~t~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~----~~~~~~Ea~~l~~~g~-~~~~~id~~~~ 217 (311)
T PRK06130 153 GDKTSPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRI----QHALAREAISLLEKGV-ASAEDIDEVVK 217 (311)
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHH----HHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 43 789999999999999975 47787655555 55555 3467899999999988 99999999873
No 51
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=6.4e-16 Score=154.16 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=140.2
Q ss_pred CCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcC------CCCccccCCHHHHH
Q 011394 2 VEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEG------DLPLFGFRDPESFV 68 (487)
Q Consensus 2 ~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g------~~~~~~~~s~~e~~ 68 (487)
.......+|||||+|.||.+||.+|+.+|++|.+||++++..+.+.+... ..+ ..++..++++++++
T Consensus 2 ~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 2 AVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV 81 (321)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence 33444578999999999999999999999999999999987665433110 000 00356677888887
Q ss_pred hhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcC
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARH 143 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~ 143 (487)
++ ||+|+.++|...+++..+ .++.+.++++. ||.+||+. -...++.+.+... |.||+..|-.
T Consensus 82 ~~---aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~-------- 148 (321)
T PRK07066 82 AD---ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVVGHPFNPVYL-------- 148 (321)
T ss_pred cC---CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEEEecCCcccc--------
Confidence 76 999999999998888666 67777777766 66666664 3444555544321 4566544311
Q ss_pred CC--ccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 144 GP--SLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 144 G~--~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
-+ -++.| .++++++.+..+++.+|+++ +.+...-.|+ +.|.+... ++.|++.+.++.. .++
T Consensus 149 ~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pGF----i~NRl~~a---~~~EA~~lv~eGv-as~ 213 (321)
T PRK07066 149 LPLVEVLGGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPGF----IADRLLEA---LWREALHLVNEGV-ATT 213 (321)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCccH----HHHHHHHH---HHHHHHHHHHhCC-CCH
Confidence 11 24554 37899999999999999763 5664444454 55776544 5599999999877 899
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
++++.++.
T Consensus 214 edID~a~~ 221 (321)
T PRK07066 214 GEIDDAIR 221 (321)
T ss_pred HHHHHHHH
Confidence 99999873
No 52
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.69 E-value=1.3e-15 Score=151.64 Aligned_cols=190 Identities=14% Similarity=0.211 Sum_probs=133.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC----------CCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD----------LPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~----------~~~~~~~s~~e~~~ 69 (487)
.+||+|||+|.||.+||.+|+++|++|++||++++.++.+.+... ..+. .+++.++++++ ++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED-LA 82 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-hc
Confidence 358999999999999999999999999999999998776543210 0000 02455666654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEE-ecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhhhc
Q 011394 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCII-DGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGAR 142 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~a~ 142 (487)
+ +|+||+|+|+..+++ .++.++.+.++++.+|+ ++|+..+ + .+++.+.. .|+||++ +|++++.+
T Consensus 83 ~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~--s-~la~~~~~~~r~~g~h~~~p~~~~~~ve--- 153 (292)
T PRK07530 83 D---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI--T-RLASATDRPERFIGIHFMNPVPVMKLVE--- 153 (292)
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--H-HHHhhcCCcccEEEeeccCCcccCceEE---
Confidence 4 999999999876655 45578888888898887 4554432 2 45544421 2678887 45543322
Q ss_pred CCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
++ .+++++.++.+.++|+.+|.. ++++++.+ | +++++. +..++.|++.+..+.- .+++
T Consensus 154 ----i~~g~~t~~~~~~~~~~~~~~~gk~-------~v~~~d~p-g---~i~nRl----~~~~~~ea~~~~~~g~-~~~~ 213 (292)
T PRK07530 154 ----LIRGIATDEATFEAAKEFVTKLGKT-------ITVAEDFP-A---FIVNRI----LLPMINEAIYTLYEGV-GSVE 213 (292)
T ss_pred ----EeCCCCCCHHHHHHHHHHHHHcCCe-------EEEecCcC-C---hHHHHH----HHHHHHHHHHHHHhCC-CCHH
Confidence 33 458999999999999999976 36776633 2 334333 4556799999988754 5899
Q ss_pred HHHHHH
Q 011394 221 ELQNVF 226 (487)
Q Consensus 221 ~i~~v~ 226 (487)
+++.++
T Consensus 214 ~iD~~~ 219 (292)
T PRK07530 214 AIDTAM 219 (292)
T ss_pred HHHHHH
Confidence 998886
No 53
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.68 E-value=1.2e-15 Score=152.15 Aligned_cols=194 Identities=13% Similarity=0.201 Sum_probs=132.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh-------hhhcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKKEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-------~~~~g~~----------~~~~~~s~~e~~~ 69 (487)
+++|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+.. .+...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 4589999999999999999999999999999999887642211 0000000 12334444 4455
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEE-ecCCCCchhHHHHHHH-HHHcCCeEEecCCCCChhhhcCCCc
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCII-DGGNEWYENTERREKA-MAELGLLYLGMGVSGGEEGARHGPS 146 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~-l~~~g~~~i~~pvsgg~~~a~~G~~ 146 (487)
. ||+||+|||++.+++..+ .++.+.++++.+|+ ++|+..+....+.... .+-.|+||+++|..+.. ..
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ve 153 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------VE 153 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------EE
Confidence 5 999999999887777654 67888888888886 6776654433222211 11236788888865321 12
Q ss_pred ccc--CCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 147 LMP--GGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 147 i~~--gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
++. +++++.++.++++|+.+|.. ++++++ ..| .+.|.+. ...++|++.+.++.. .+++++..
T Consensus 154 iv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g----~i~nri~---~~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 154 IIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPG----FIVNRIL---MPMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccc----HHHHHHH---HHHHHHHHHHHHcCC-CCHHHHHH
Confidence 333 35899999999999999975 466765 223 3455554 445699999999876 88999988
Q ss_pred HH
Q 011394 225 VF 226 (487)
Q Consensus 225 v~ 226 (487)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 75
No 54
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.68 E-value=3.4e-15 Score=155.98 Aligned_cols=194 Identities=19% Similarity=0.212 Sum_probs=143.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|+||| +|.||..+|..|.++|++|++|||++++..++.... ++..+.++.+.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 5899997 899999999999999999999999998876655432 24456677777776 99999999985 6
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcCCC-ccccC---CCHHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHGP-SLMPG---GSFEAYKYIED 161 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~G~-~i~~g---g~~~~~~~v~~ 161 (487)
+.+++.++.+.+.++.+|+|++++.+...+.+.+.+ ..+..|+++ |++|.......|. .+++. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 788999999999999999999998866666555543 357889977 8887655555677 44443 36788899999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+|+.+|.+ ++++++... -+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~-------v~~~~~e~H---D~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGAR-------VIVTSPEEH---DRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCE-------EEECCHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 99999976 466766432 3344333333344444445444 5567 88776543
No 55
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.67 E-value=1.8e-15 Score=155.20 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=141.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.+++|+||| +|.||.++|+.|.++||+|++||+++. +++++++.+ +|+||+|+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH
Confidence 457899998 999999999999999999999998631 134555665 99999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC-CHHHHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG-SFEAYKYIED 161 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg-~~~~~~~v~~ 161 (487)
....++.++.+ +++|.+|+|+|++.+.....+.+.+ ...|+ ..|++|.+.....|. .+++++ ++++++.+.+
T Consensus 154 -~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~---~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~ 228 (374)
T PRK11199 154 -LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAH---SGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLE 228 (374)
T ss_pred -HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhC---CCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHH
Confidence 56778888888 8999999999998866655554432 23588 669999877666666 555555 6788999999
Q ss_pred HHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 162 ILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 162 ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+++.+|++ ++++++.+....++++. .+ .++..++++..+++ .+ .+.+++.+
T Consensus 229 l~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 229 QIQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 99999987 58999999999999998 43 66667788887766 56 78776544
No 56
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.67 E-value=2.2e-15 Score=149.75 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=136.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh----------hcCCC----------CccccCCHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------KEGDL----------PLFGFRDPES 66 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~----------~~g~~----------~~~~~~s~~e 66 (487)
..+|+|||+|.||.+||..|+.+|++|++||++++.++...+... ..+.. ++..+++. +
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 468999999999999999999999999999999998765432110 00000 12334444 3
Q ss_pred HHhhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhh
Q 011394 67 FVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEG 140 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~ 140 (487)
.+++ +|+||+|+|+...+ ..++.++.+.++++.+|+..+++. ...++++.+.. .|+||+. +|++++.+
T Consensus 82 ~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE- 155 (291)
T PRK06035 82 SLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIE- 155 (291)
T ss_pred HhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEE-
Confidence 4444 99999999987654 455677888888888887555544 33455555532 2778886 56776644
Q ss_pred hcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 141 ARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 141 a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
+..|+. .++++++.+.++++.+|+. ++++++.+.....|+++| .++|++.+.++.- .+++
T Consensus 156 v~~g~~----T~~e~~~~~~~~~~~lgk~-------~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~~~ 215 (291)
T PRK06035 156 VVRAAL----TSEETFNTTVELSKKIGKI-------PIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-ATIK 215 (291)
T ss_pred EeCCCC----CCHHHHHHHHHHHHHcCCe-------EEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CCHH
Confidence 234441 2899999999999999976 477887666666666654 4589999988754 6899
Q ss_pred HHHHHH
Q 011394 221 ELQNVF 226 (487)
Q Consensus 221 ~i~~v~ 226 (487)
+++.++
T Consensus 216 ~iD~~~ 221 (291)
T PRK06035 216 DIDEMC 221 (291)
T ss_pred HHHHHH
Confidence 999886
No 57
>PRK07680 late competence protein ComER; Validated
Probab=99.67 E-value=8e-15 Score=144.46 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=135.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++..+.++.+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999998877765321 24567788888776 9999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC-ccccC--CCHHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-SLMPG--GSFEAYKYIE 160 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v~ 160 (487)
. ++.++++++.+++.++++||+++++. ....+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 4 78999999999898899999999865 3444544443333344432 234455777 44555 4667889999
Q ss_pred HHHHHHhccCCCCCCeEEEeCCc-hhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011394 161 DILLKVAAQVPDSGPCVTYVSKG-GSG-NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTE 228 (487)
Q Consensus 161 ~ll~~ig~~~~~~~~~~~~~G~~-G~g-~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~ 228 (487)
++|+.+|.. +++.+. ... ..+=-+.-++.+.++..+.++. .++.| +++++..+++..
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~ 204 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASE 204 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHH
Confidence 999999953 444432 000 0001112245555565555553 24478 999998888743
No 58
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=1.8e-14 Score=140.82 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=150.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+|||||+|+||.+|++.|.+.|+. +.+|||++++.+++.+... +...+.++.+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4899999999999999999999864 5799999999888876531 14567788888887 9999999995
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCHHHHHHHHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILL 164 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~~~~~~v~~ll~ 164 (487)
..+.++++++ . +.++++||++..+. ..+.+.+.+......+..+|+.... ...|.+.+++++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56889999977654 4444555444334456678873222 223555555543 57899999
Q ss_pred HHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhcc
Q 011394 165 KVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITAD 244 (487)
Q Consensus 165 ~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~ 244 (487)
.+|..+ +++++..-...-.+. +..+.++.++.++..++++.| +|+++..+++...-.| ...
T Consensus 142 ~lG~~~--------~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~G---------~~~ 202 (258)
T PRK06476 142 ALGTAV--------ECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQG-LKRQKARAYLAPLFAS---------LAQ 202 (258)
T ss_pred hcCCcE--------EECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---------HHH
Confidence 999753 243210000000000 122233456788888899999 9999998887432222 222
Q ss_pred c-cccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhH
Q 011394 245 I-FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 288 (487)
Q Consensus 245 ~-l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~ 288 (487)
. +... +..+.-+.|.+ ...-||..-.++.-.+.|+.-.+.
T Consensus 203 l~~~~~-~~~~~~l~~~v---~spgGtT~~gl~~le~~~~~~~~~ 243 (258)
T PRK06476 203 DAVRST-KTDFSALSREF---STKGGLNEQVLNDFSRQGGYAALT 243 (258)
T ss_pred HHHhcC-CCCHHHHHHhC---CCCCchHHHHHHHHHHCChHHHHH
Confidence 3 2222 22333333333 333455544555556677754433
No 59
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.66 E-value=1.2e-16 Score=167.15 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=98.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHhhCCCCC-CC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNADLA-NL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~-~l 399 (487)
.+++||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998422 3 555 4556669998 489999999999998765432 58
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++|.+.+...+++++ ||+|++|+++|+|+|+|++||. ++++++.+|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 889999999999999 9999999999999999999996 55556655543
No 60
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=1.5e-15 Score=153.93 Aligned_cols=294 Identities=9% Similarity=0.002 Sum_probs=183.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-------CcEEEEeCChH-----HHHHHHHhhhhcC---C----CCccccCCHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKKEG---D----LPLFGFRDPES 66 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~l~~~~~~~g---~----~~~~~~~s~~e 66 (487)
..+||+|||.|.||+++|..|+++| |+|.+|.|+++ .++.+.+.+.+.. + .++..++++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 4579999999999999999999998 89999999986 3555554432210 0 04566788888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHhh--cccCCCEEEecCCCCchhHH---HHHHHHHH---cCCeEEecCCCCCh
Q 011394 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSA--YMEKGDCIIDGGNEWYENTE---RREKAMAE---LGLLYLGMGVSGGE 138 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~~---~~~~~l~~---~g~~~i~~pvsgg~ 138 (487)
++++ +|+||++||+. .++++++++.+ .+.++.++|.++.+....+. .+.+.+.+ ..+.++..|-+. .
T Consensus 90 av~~---aDiIvlAVPsq-~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A-~ 164 (365)
T PTZ00345 90 AVED---ADLLIFVIPHQ-FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA-N 164 (365)
T ss_pred HHhc---CCEEEEEcChH-HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH-H
Confidence 8887 99999999974 89999999998 78777789988776643331 12233322 223334444322 2
Q ss_pred hhhcCCC--ccccCCCHHHHHHHHHHHHHHhcc-----------CCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 139 EGARHGP--SLMPGGSFEAYKYIEDILLKVAAQ-----------VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 139 ~~a~~G~--~i~~gg~~~~~~~v~~ll~~ig~~-----------~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
+-++.-+ .++++-+.+..+.++++|..=.-+ +...-++++.++. |.....++-.|+-.+.+...++
T Consensus 165 Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~ 243 (365)
T PTZ00345 165 DVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLE 243 (365)
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHH
Confidence 3333344 345566888888888888531111 0011134444432 4445566778999999999999
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCC---CchhHHhhhhcc--CCCCchHHHH----
Q 011394 206 EAYDVLKSVG-KLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKG---DGYLVDKVLDKT--GMKGTGKWTV---- 275 (487)
Q Consensus 206 Ea~~l~~~~g-~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~---~~~~l~~i~~~~--~~kgtg~~~~---- 275 (487)
|+..+++..| |.+++++..+-. -|.+--.... ++..+-+..+. ++..++.+.+.. +++-+|..++
T Consensus 244 Em~~l~~a~g~~~~~~T~~glaG---~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~ 318 (365)
T PTZ00345 244 EMKLFGKIFFPNVMDETFFESCG---LADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVY 318 (365)
T ss_pred HHHHHHHHhCCCCCccchhccch---HhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHH
Confidence 9999999997 247776654310 0111111111 11111110111 112455555554 6778887777
Q ss_pred HHHHHcCC--CchhHHHHHHHHHhhccchHHHHHHHhhc
Q 011394 276 QQAADLSV--AAPTIASSLDARFLSGLKEERVEAAKVFK 312 (487)
Q Consensus 276 ~~a~~~gv--~~P~~~~a~~~r~~s~~~~~r~~~~~~~~ 312 (487)
+.++++++ ++|++.+ + .|.+...++.......++.
T Consensus 319 ~l~~~~~i~~~~Pi~~~-v-y~il~~~~~~~~~~~~l~~ 355 (365)
T PTZ00345 319 EVLESHDLKKEFPLFTV-T-YKIAFEGADPSSLIDVLST 355 (365)
T ss_pred HHHHHcCCCCCCCHHHH-H-HHHHhCCCCHHHHHHHHHc
Confidence 67789999 8999875 3 4555555555566555553
No 61
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.65 E-value=1.8e-14 Score=141.37 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=137.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+||||||+|+||.+|+..|.++|+ +|++|||++++++.+.+.. ++..+.+..+++++ +|+||+|||
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLavk 72 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILSIK 72 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEEeC
Confidence 3589999999999999999999885 6999999999988876532 24566788888877 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC--CHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG--SFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~ 158 (487)
+ .++.++++++.+.+.++.+||+.-.+.+- ..+.+.+.. ..+.+ -+|... .....|. .+..+. +++..+.
T Consensus 73 P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i--~~l~~~l~~-~~~vvR~MPN~~--~~vg~g~t~~~~~~~~~~~~~~~ 146 (272)
T PRK12491 73 P-DLYSSVINQIKDQIKNDVIVVTIAAGKSI--KSTENEFDR-KLKVIRVMPNTP--VLVGEGMSALCFNEMVTEKDIKE 146 (272)
T ss_pred h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcH--HHHHHhcCC-CCcEEEECCChH--HHHcCceEEEEeCCCCCHHHHHH
Confidence 6 68999999999888888999998887633 345454422 22233 556432 2334566 344432 5667788
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 147 v~~lf~~~G~~~~~~E~~~d~~talsgsgP-------Af~~~~~eal~~a---~v~~G-l~~~~A~~l~~ 205 (272)
T PRK12491 147 VLNIFNIFGQTEVVNEKLMDVVTSISGSSP-------AYVYMFIEAMADA---AVLGG-MPRKQAYKFAA 205 (272)
T ss_pred HHHHHHcCCCEEEEcHHHhhhHHHhccCcH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999642222222211111 34444 5666677777776 56677 99999888874
No 62
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.63 E-value=2.4e-14 Score=143.31 Aligned_cols=255 Identities=18% Similarity=0.237 Sum_probs=160.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CC--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GD--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+... +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 78887776543110 00 001123445555444 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC----C
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG----S 152 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg----~ 152 (487)
|+. +++++++.+.+.+.++.+||...|+. ...+.+.+.+.+. ++.++++...+...-...+. .+..|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 986 78999999999888888998888875 2233344444322 34445554433211111233 344442 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH---------------------HHHHHHHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 211 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~---------------------~~~~~~~~Ea~~l~ 211 (487)
.+..+.+..+|...+.+ +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34555666667665532 234445677788898888543 34556789999999
Q ss_pred HHhCCCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 212 KSVGKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 212 ~~~g~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
++.| ++. +.+.+.+....... .....++..++.+.+. ..+|.+.. ..++.|+++|+|+|...
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 773 33434333211111 1112223344444321 35677655 47899999999999987
Q ss_pred HH
Q 011394 290 SS 291 (487)
Q Consensus 290 ~a 291 (487)
..
T Consensus 292 ~l 293 (305)
T PRK12921 292 TV 293 (305)
T ss_pred HH
Confidence 53
No 63
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.63 E-value=2.7e-14 Score=138.91 Aligned_cols=192 Identities=10% Similarity=0.089 Sum_probs=134.0
Q ss_pred CcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHHH-----HHHHhhhhcCCCCccccC
Q 011394 8 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKKEGDLPLFGFR 62 (487)
Q Consensus 8 ~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~l~~~~~~~g~~~~~~~~ 62 (487)
|||.|.|+|+- |.+||++|+++||+|++|||++++++ .+.+.| +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 68999999974 88999999999999999999987653 344433 56788
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHH-H--HHcCCeEEe---cCCCC
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA-M--AELGLLYLG---MGVSG 136 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~-l--~~~g~~~i~---~pvsg 136 (487)
++.+++++ +|+||+|+|++.+++++++++.+.+.+|++|||+||+.|....+..+. + ..+.+.... +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999988776554 2 233333333 23322
Q ss_pred ChhhhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHH
Q 011394 137 GEEGARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAY 208 (487)
Q Consensus 137 g~~~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~ 208 (487)
.+. ++..++.| .++|..+++-++.++.+... +.+-..=.+...-|+. ...+...+.+.+-+
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~-------~~~pa~l~~~v~Dm~s-~vta~~~~gil~y~ 219 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKA-------YVVPADVTSAVADMGS-LVTAVALAGVLDYY 219 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHHH-HHHHHHHHHHHHHH
Confidence 211 22223322 27888999999999988752 4333223333333332 33444566666777
Q ss_pred HHHHHhCCCCHH
Q 011394 209 DVLKSVGKLTNE 220 (487)
Q Consensus 209 ~l~~~~g~i~~~ 220 (487)
..+.+.-|.+.+
T Consensus 220 ~~~t~i~~ap~~ 231 (341)
T TIGR01724 220 YVGTQIINAPKE 231 (341)
T ss_pred HHHHHHhcCcHH
Confidence 667665535544
No 64
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.63 E-value=2.9e-15 Score=150.92 Aligned_cols=271 Identities=10% Similarity=0.024 Sum_probs=168.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCC--------CcEEEEeC-----ChHHHHHHHHhhhhcC---CC----CccccCCHHHHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKKEG---DL----PLFGFRDPESFV 68 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~l~~~~~~~g---~~----~~~~~~s~~e~~ 68 (487)
||+|||.|+||.+||..|+++| ++|.+|.| +++-.+.+.+...+.. +. +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5555555443322110 00 355677888888
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh--HHH-HHHHHHH---cCCeEEecCCCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN--TER-REKAMAE---LGLLYLGMGVSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~~-~~~~l~~---~g~~~i~~pvsgg~~~a~ 142 (487)
+. +|+||++||+. .++.+++++.+++.+++++|.++.+.... +.. +.+.+++ ..+.++..|-+. .+-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A-~Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLA-NEVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchH-HHHHc
Confidence 87 99999999985 89999999999998899999998776544 322 2222222 223334444332 23333
Q ss_pred CCC-cc-ccCCC----HHHHHHHHHHHHHHhcc-----------CCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHH
Q 011394 143 HGP-SL-MPGGS----FEAYKYIEDILLKVAAQ-----------VPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIA 205 (487)
Q Consensus 143 ~G~-~i-~~gg~----~~~~~~v~~ll~~ig~~-----------~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~ 205 (487)
.-+ .+ +.+.+ .+..+.++.+|+.=--+ +...-|+++.++. |....+.+-.|+-.+.+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 344 33 44456 67788888888531111 0001133344332 4444456678999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhHhhhccccccccCCCC-chhHHhhhhc--cCCCCchHHHHH----
Q 011394 206 EAYDVLKSVGKLTNE--ELQNVFTEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQ---- 276 (487)
Q Consensus 206 Ea~~l~~~~g~i~~~--~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~-~~~l~~i~~~--~~~kgtg~~~~~---- 276 (487)
|+..+++..| -+++ ++..+ .|.++-.+.-..++..+-+..+.. +..++.+.+. .+++-+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 5555 44322 111111000000111111111122 3455666666 677888866664
Q ss_pred HHHHcCCC--chhHHHH
Q 011394 277 QAADLSVA--APTIASS 291 (487)
Q Consensus 277 ~a~~~gv~--~P~~~~a 291 (487)
.++++++. +|++.+.
T Consensus 309 l~~~~~i~~~~Pi~~~v 325 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEAV 325 (342)
T ss_pred HHHHcCCCcCCCHHHHH
Confidence 57789999 9998753
No 65
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=3.2e-14 Score=141.16 Aligned_cols=196 Identities=14% Similarity=0.236 Sum_probs=134.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCC-----------CCccccCCHHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGD-----------LPLFGFRDPESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~~~~~~~s~~e~~ 68 (487)
++||+|||+|.||.++|..|+++|++|++||++++.++++.+... ..+. .+++.++++++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 468999999999999999999999999999999987766543210 0000 0345677888877
Q ss_pred hhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC--
Q 011394 69 NSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP-- 145 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-- 145 (487)
+. +|+||+|+|+..++ ..++.++.+.++++.+|++.+++.+.. ++.+.+ .+.-+|+++..+..+ ...+
T Consensus 83 ~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~-~~~~r~vg~Hf~~p~---~~~~lv 153 (287)
T PRK08293 83 KD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEAT-GRPEKFLALHFANEI---WKNNTA 153 (287)
T ss_pred cC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhc-CCcccEEEEcCCCCC---CcCCeE
Confidence 76 99999999987544 456688888888888886554444322 333333 223345554322211 1223
Q ss_pred ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 011394 146 SLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQ 223 (487)
Q Consensus 146 ~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~ 223 (487)
-++ .+.++++++.+.++++.+|+.+ +.+.+...|. +.|.+ ....++|++.+.++.. .++++++
T Consensus 154 evv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgf----i~nRi---~~~~~~ea~~l~~~g~-a~~~~iD 218 (287)
T PRK08293 154 EIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGY----ILNSL---LVPFLSAALALWAKGV-ADPETID 218 (287)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCH----hHHHH---HHHHHHHHHHHHHcCC-CCHHHHH
Confidence 344 3468999999999999999763 6666545555 34555 3445699999998866 7899999
Q ss_pred HHH
Q 011394 224 NVF 226 (487)
Q Consensus 224 ~v~ 226 (487)
.++
T Consensus 219 ~a~ 221 (287)
T PRK08293 219 KTW 221 (287)
T ss_pred HHH
Confidence 886
No 66
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.63 E-value=4.6e-16 Score=162.94 Aligned_cols=118 Identities=12% Similarity=0.220 Sum_probs=96.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW-DLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVD 402 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~-~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~ 402 (487)
.+++||+||+||+|+|++|++++|+|.|+++.. +. ..++.++++.|+.| .++|+++++..++|++.+.....++|
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~l~ 247 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---GLSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPLVD 247 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCccHH
Confidence 489999999999999999999999999997532 32 12445566778987 78999999999999884433468889
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHH-hhcCCC
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFD-SYRRER 447 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~-~~~~~~ 447 (487)
.+.+...+++++ ||+|++|+++|+|+|+|++++. ++. ..+.+|
T Consensus 248 ~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r 292 (467)
T TIGR00873 248 KILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEER 292 (467)
T ss_pred hhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHH
Confidence 888889999999 9999999999999999999996 443 334443
No 67
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.63 E-value=1e-13 Score=136.06 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=151.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+.. ++....+..++++. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 679999999999999999999999 78999999999888776642 24456778887776 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChhhhcCCC-ccccC--CCHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEEGARHGP-SLMPG--GSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~~a~~G~-~i~~g--g~~~~~~~v 159 (487)
. .+.++++.+.+.+ +++||.++++.+.. .+.+.+ ..+.+++. +|. .+.....+. .++++ ++++..+.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~-~~~~~iv~~~P~--~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLL-GADLPVVRAMPN--TPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhc-CCCCcEEEecCC--chHHHcCceEEEecCCCCCHHHHHHH
Confidence 5 7899999888876 57888888876433 333333 23445553 342 222333444 35555 388999999
Q ss_pred HHHHHHHhccCCCCCCeEEEeCCchhhHHHH-hHHH--HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchh
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSKGGSGNFVK-MIHN--GIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLS 236 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K-~v~N--~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s 236 (487)
+.+|+.+|.. +++.++..=+.+- +..+ ++.+.++..+.++ +.+.| +++++..+++..+-.|.
T Consensus 145 ~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~G-l~~~~a~~~~~~~~~g~--- 209 (267)
T PRK11880 145 ENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGPAYVFLFIEALADA---GVKLG-LPREQARKLAAQTVLGA--- 209 (267)
T ss_pred HHHHHhCCeE--------EEECChHhcchHHHHhcChHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHHHHHH---
Confidence 9999999963 4554322112211 1111 2333333333333 56677 99999888875433332
Q ss_pred hhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 237 FLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
...+...+ ..+.-+.+.+ ...-|+-.-.++...+.|++-.+..
T Consensus 210 ------~~~~~~~~-~~~~~l~~~v---~tpgG~t~~gl~~l~~~g~~~~~~~ 252 (267)
T PRK11880 210 ------AKLLLESG-EHPAELRDNV---TSPGGTTIAALRVLEEKGLRAAVIE 252 (267)
T ss_pred ------HHHHHhcC-CCHHHHHHhC---CCCcHHHHHHHHHHHHCCHHHHHHH
Confidence 22222211 2222223333 3333555555666777788755443
No 68
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=2.1e-14 Score=142.22 Aligned_cols=191 Identities=18% Similarity=0.256 Sum_probs=131.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHH-----------HHhhhhcC------CCCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET-----------VERAKKEG------DLPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l-----------~~~~~~~g------~~~~~~~~s~~e~~~ 69 (487)
++||+|||+|.||.++|..|+++|++|++||+++++++.. .+.+.... ..+++.+++.++ ++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK 81 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence 5689999999999999999999999999999999987532 22210000 002344556654 44
Q ss_pred hcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEe-cCCCCChhhhcC
Q 011394 70 SIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLG-MGVSGGEEGARH 143 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pvsgg~~~a~~ 143 (487)
+ ||+||+|+|+...++ .++.++.+.++++++|+..+++. ..+ .+++.+.. .++||.. +++..+.+
T Consensus 82 ~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve---- 152 (282)
T PRK05808 82 D---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE---- 152 (282)
T ss_pred c---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHH-HHHHhhCCCcceEEeeccCCcccCccEE----
Confidence 4 999999999876655 67788888888888774444333 232 55555522 2445554 34433322
Q ss_pred CCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 144 GPSLM--PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 144 G~~i~--~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
++ .+.+++.++.+.++++.+|.. ++++++ ..| .+.|.+. ..+++|++.+.++.- .++++
T Consensus 153 ---v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g----~i~~Ri~---~~~~~ea~~~~~~gv-~~~~d 213 (282)
T PRK05808 153 ---IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APG----FVVNRIL---IPMINEAIFVLAEGV-ATAED 213 (282)
T ss_pred ---EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccC----hHHHHHH---HHHHHHHHHHHHhCC-CCHHH
Confidence 33 346899999999999999976 477754 444 3456554 455599999998866 78999
Q ss_pred HHHHH
Q 011394 222 LQNVF 226 (487)
Q Consensus 222 i~~v~ 226 (487)
++.++
T Consensus 214 iD~~~ 218 (282)
T PRK05808 214 IDEGM 218 (282)
T ss_pred HHHHH
Confidence 98886
No 69
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.62 E-value=7e-16 Score=160.91 Aligned_cols=117 Identities=13% Similarity=0.216 Sum_probs=96.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHhhCCC-CCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELARIWKGGCIIRAVFLDRIKKAYDRNAD-LANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~-~~~l 399 (487)
.++|||+||+||+|+|++|++++|+|.++++.. + +|. .+|++.|+.| .++|+++++..+++.+.+. ..+.
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999998521 3 555 4556679998 5899999999999987432 3458
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHH-hhcCCCc
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA-YFD-SYRRERL 448 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~-~~~-~~~~~~~ 448 (487)
++|.+.+...+|+++ ||++++|+++|+|+|+|++|+. ++. .++.+|.
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~ 286 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRV 286 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHH
Confidence 889999999999999 9999999999999999999996 433 3444443
No 70
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=6.6e-14 Score=141.49 Aligned_cols=261 Identities=13% Similarity=0.135 Sum_probs=149.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----C-C--CCccccCCHHHHH-hhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----G-D--LPLFGFRDPESFV-NSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g-~--~~~~~~~s~~e~~-~~l~~advIi~ 79 (487)
|||+|||+|.||..+|..|+++|++|++|+|+++.++.+.+.+... + . .++..++++.+.. .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 5899999999999999999999999999999998888877642110 0 0 0233456666665 34 899999
Q ss_pred ecCCChhHHHHHHHHhh-cccCCCEEEecCCCCchh-----HHHHHHHHHHcCCeEEecCCCCChhhhcCCC-cc-ccCC
Q 011394 80 LVKAGAPVDETIKTLSA-YMEKGDCIIDGGNEWYEN-----TERREKAMAELGLLYLGMGVSGGEEGARHGP-SL-MPGG 151 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~-~i-~~gg 151 (487)
+||+. +++++++++.+ .+.++..||.++++.... .+.+.+.+....+..+..|-.. .+.+...+ .+ +.|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99985 79999999998 887777777777776332 2222222222222222233211 12333344 33 3444
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHh
Q 011394 152 SFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 152 ~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N-----------------~~~~~~~~~~~Ea~~l~~~~ 214 (487)
+.+..+.+..+|+.-+-+ +...-+.-...+.|++-| .....+.+++.|+..+++..
T Consensus 156 ~~~~~~~l~~~l~~~~~~-------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~ 228 (326)
T PRK14620 156 NETLGSSLISKLSNENLK-------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAK 228 (326)
T ss_pred CHHHHHHHHHHHCCCCeE-------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 555445555555432222 122222333334444433 44455678899999999998
Q ss_pred CCC--CHHHHH------HHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCch----HHHHHHHHHcC
Q 011394 215 GKL--TNEELQ------NVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTG----KWTVQQAADLS 282 (487)
Q Consensus 215 g~i--~~~~i~------~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg----~~~~~~a~~~g 282 (487)
| . +++++. +++........+++-+... +..+..++.+.+.....-+| ....+.++++|
T Consensus 229 G-~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~---------l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~ 298 (326)
T PRK14620 229 N-GSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFK---------IGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLN 298 (326)
T ss_pred C-CCCCcchhhccchhhhhhheecCCCCCcHHHHHH---------HHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhC
Confidence 8 5 777773 3332111111111111100 01112233332221111122 35778999999
Q ss_pred CCchhHHH
Q 011394 283 VAAPTIAS 290 (487)
Q Consensus 283 v~~P~~~~ 290 (487)
+++|+...
T Consensus 299 i~~P~~~~ 306 (326)
T PRK14620 299 IELPICES 306 (326)
T ss_pred CCCCHHHH
Confidence 99999875
No 71
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.60 E-value=3.4e-14 Score=142.42 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=123.1
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
...+++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|+
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiav 74 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCV 74 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECC
Confidence 3445799999999999999999999995 89999999998877665432 12345567777665 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChh-hhc-------CCC-ccc---
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GAR-------HGP-SLM--- 148 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~-~a~-------~G~-~i~--- 148 (487)
|.. ....++.++.+.+.++.+|+|.++......+...+.+ ..+++|+++ |+.|++. +.. .|. .++
T Consensus 75 p~~-~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~ 152 (307)
T PRK07502 75 PVG-ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPP 152 (307)
T ss_pred CHH-HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCC
Confidence 986 5778888888888999999999888755544443332 347789987 9887642 222 233 222
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhH
Q 011394 149 PGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (487)
Q Consensus 149 ~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~ 187 (487)
.+++++.++.++++++.+|.+ ++++++.....
T Consensus 153 ~~~~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD~ 184 (307)
T PRK07502 153 EGTDPAAVARLTAFWRALGAR-------VEEMDPEHHDL 184 (307)
T ss_pred CCCCHHHHHHHHHHHHHcCCE-------EEEcCHHHHhH
Confidence 356888999999999999976 46776644333
No 72
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.59 E-value=1.1e-13 Score=138.25 Aligned_cols=254 Identities=15% Similarity=0.213 Sum_probs=150.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh--cCC--CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK--EGD--LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~--~g~--~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+|.||..+|..|+++|++|++++|++++.+.+.+.+.. .+. .++...++++++ . .+|+||+++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 589999999999999999999999999999998888877654321 000 001223445544 4 39999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC---CHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEA 155 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg---~~~~ 155 (487)
. +++.+++.+.+.+.++.+||...|+.. ..+.+.+.+... ++.++.+-..+...-...+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGVG-HLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCCC-cHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 6 789999999999888888998888752 223333333221 11122221111100011122 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~~~~Ea~~l~~~~ 214 (487)
.+.+.++|+..+.+ +...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLD-------VEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCC-------CCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 56666777665533 1222234555556665552 3344567789999999998
Q ss_pred CCCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 215 GKLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 215 g~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
| ++. +.+.+.+......... ...++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 663 3444433322111111 11223334433321 24555543 578999999999998764
No 73
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.58 E-value=2.7e-14 Score=131.96 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=97.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh---------------hhhcCCCCccccCCHHHHHhhcC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKKEGDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~---------------~~~~g~~~~~~~~s~~e~~~~l~ 72 (487)
|||+|||+|++|.++|..|+++||+|++||.++++++.+.+. ....+ ++..+++.++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 799999999999999999999999999999999998776531 11111 56788888887877
Q ss_pred CCcEEEEecCCC---------hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHH-HHHcC-----CeEEecCCCCC
Q 011394 73 KPRVIIMLVKAG---------APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKA-MAELG-----LLYLGMGVSGG 137 (487)
Q Consensus 73 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~-l~~~g-----~~~i~~pvsgg 137 (487)
+|++|+|||++ ..++++++.+.+.++++++||..||..|.+++++... +++.+ +++.-+|-+-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999876 2477888999999999999999999999999966544 44333 35556674333
Q ss_pred hhhh----cCCCccccCCCHHHHH-HHHH
Q 011394 138 EEGA----RHGPSLMPGGSFEAYK-YIED 161 (487)
Q Consensus 138 ~~~a----~~G~~i~~gg~~~~~~-~v~~ 161 (487)
+-.+ ++-+.++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2211 1222566666544433 5554
No 74
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.57 E-value=1.3e-13 Score=133.03 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=137.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
||||||||.|+||.+|+..|.++| .+|++.||++++.+.+.++.. +..+++..+++.. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 579999999999999999999999 699999999999887766542 3346777888887 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccC--CCHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~~~~~ 158 (487)
+ +.+.+++.++.+ ..++++||....+.+. ..+.+.+. +.+++ -+|... .....|. .+..+ .+++..+.
T Consensus 72 P-q~~~~vl~~l~~-~~~~~lvISiaAGv~~--~~l~~~l~--~~~vvR~MPNt~--a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 P-QDLEEVLSKLKP-LTKDKLVISIAAGVSI--ETLERLLG--GLRVVRVMPNTP--ALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred h-HhHHHHHHHhhc-ccCCCEEEEEeCCCCH--HHHHHHcC--CCceEEeCCChH--HHHcCcceeeecCccCCHHHHHH
Confidence 7 589999999988 7899999998877633 34444443 34444 456432 2333565 34443 37788889
Q ss_pred HHHHHHHHhccCCCCCCeEEEeC-CchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVS-KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G-~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
+..||+.+|......|..+-.+. -.|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 144 v~~l~~~~G~v~~v~E~~~da~TaisGSgP-------Ayv~~~iEal~~a---gv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGKVVEVEESLMDAVTALSGSGP-------AYVFLFIEALADA---GVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCCeEEechHHhhHHHHHhcCCH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999974322222222221 145555 4555566565555 56777 99999888763
No 75
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=2.5e-13 Score=138.85 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=132.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||.+||+.|.++|++|.+|+++++..+.....+... .-...+++++++++ +|+||+|+|.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGV---IDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCC---CcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 3799999999999999999999999999999887654433222100 01234566777766 99999999985 78
Q ss_pred HHHHHHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCCCCChh-h-------hcCCC-ccccC---CCH
Q 011394 88 DETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGVSGGEE-G-------ARHGP-SLMPG---GSF 153 (487)
Q Consensus 88 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pvsgg~~-~-------a~~G~-~i~~g---g~~ 153 (487)
..++.++.+ .+.++.+|+|.+++.........+. ...+..|++ .|+.|++. + ...|. .+++. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4788999999999886555444333 345678997 58888642 1 12344 33332 578
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+.++.++++++.+|+. ++++.+......+-++... -.++++++ +...+ .+.+....
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vshl-----Ph~ia~al--~~~~~-~~~~~~~~ 208 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVSHL-----PHILASSL--AARLA-GEHPLALR 208 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhccH-----HHHHHHHH--HHhhc-cCchHHHh
Confidence 8999999999999976 4677765544444443332 23344443 45555 55544433
No 76
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.51 E-value=3.5e-13 Score=134.89 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHH-------HHHHHHh-------hhhcCCC----------CccccCC--HHHHHhhc
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKKEGDL----------PLFGFRD--PESFVNSI 71 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~l~~~-------~~~~g~~----------~~~~~~s--~~e~~~~l 71 (487)
||..||..++.+|++|.+||++++. ++...+. ....|.. +++.+.+ +.+++++
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 1111111 0000000 3444443 5566666
Q ss_pred CCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHH----HcCCeEEecC-------CCCChh
Q 011394 72 QKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMA----ELGLLYLGMG-------VSGGEE 139 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~p-------vsgg~~ 139 (487)
||+||.|||++.+++..+ .++.+.++++.|| +||+++....++++.+. ..|+||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888766 6777888888888 55555556667777662 3488999888 55443
Q ss_pred hhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 140 GARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 140 ~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
++++++++++.++++.+|+. ++++++.+ |+ +.|. .....++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~-------~v~v~d~~-Gf----i~nr---i~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKV-------PVVCGPSP-GY----IVPR---IQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCc-------EEEecCCC-Cc----chHH---HHHHHHHHHHHHHHhCC-CCH
Confidence 46899999999999999976 47888754 43 2333 46677899999999988 999
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
+++.+++.
T Consensus 209 e~iD~a~~ 216 (314)
T PRK08269 209 EDIDKAIR 216 (314)
T ss_pred HHHHHHHH
Confidence 99999873
No 77
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.50 E-value=2.2e-12 Score=127.32 Aligned_cols=196 Identities=13% Similarity=0.091 Sum_probs=133.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC----CcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... ....+.+..++++. +|+||+|+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilav 72 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICV 72 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEec
Confidence 578999999999999999999998 7999999864 44555443221 13345677887776 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccC--CCHHHHH
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPG--GSFEAYK 157 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~g--g~~~~~~ 157 (487)
|+. .+.++++++.+.+.++.+||...++.... ++.+.+. +..++ -+|... .....|. .+..+ -+++..+
T Consensus 73 pp~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~~--~l~~~~~--~~~vvR~MPN~~--~~~g~g~t~~~~~~~~~~~~~~ 145 (277)
T PRK06928 73 PPL-AVLPLLKDCAPVLTPDRHVVSIAAGVSLD--DLLEITP--GLQVSRLIPSLT--SAVGVGTSLVAHAETVNEANKS 145 (277)
T ss_pred CHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHH--HHHHHcC--CCCEEEEeCccH--HHHhhhcEEEecCCCCCHHHHH
Confidence 964 78999999998888888999988876433 4444442 12333 456432 2334566 34443 2567788
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 158 YIEDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 158 ~v~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
.++.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.||+++++..++..
T Consensus 146 ~v~~l~~~~G~~~~v~E~~~d~~tal~gsgP-------A~~~~~~~al~~a---~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 146 RLEETLSHFSHVMTIREENMDIASNLTSSSP-------GFIAAIFEEFAEA---AVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHHhCCCEEEEchhhCceeeeeecCHH-------HHHHHHHHHHHHH---HHHhCCCCHHHHHHHHH
Confidence 9999999999754333333322222 46665 4455555555555 45553499999888764
No 78
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.50 E-value=1.5e-12 Score=130.75 Aligned_cols=255 Identities=14% Similarity=0.147 Sum_probs=153.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEE
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~~~~~~s~~e~~~~l~~advI 77 (487)
+..|+|+|||+|.||..+|..|+++|++|+++.|++. +.+.+.+... +.. .+...+++++ .. .+|+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~~D~v 76 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-MP---PCDWV 76 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-cC---CCCEE
Confidence 3457999999999999999999999999999999863 3344332110 000 0112223332 23 38999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-Chhh-hcCCCccc--c
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEG-ARHGPSLM--P 149 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsg-g~~~-a~~G~~i~--~ 149 (487)
|+|||.. ++.++++.+.+.+.++.+|+...|+. ...+.+.+.+.+. |+.++++...+ |... ...|...+ .
T Consensus 77 ilavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~ 154 (313)
T PRK06249 77 LVGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYH 154 (313)
T ss_pred EEEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecC
Confidence 9999987 67888888989888888899888876 3333444444322 33344443322 1111 11223211 1
Q ss_pred CC-C-----HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHH
Q 011394 150 GG-S-----FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQ 202 (487)
Q Consensus 150 gg-~-----~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~ 202 (487)
.+ + .+..+.+..+|+..+-. +....+.-...+.|++.|. .......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~ 227 (313)
T PRK06249 155 SGPAADDGITARVEEGAALFRAAGID-------SQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRA 227 (313)
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCC-------ceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHH
Confidence 22 2 35566677777776643 2334445666666766552 2345666
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHH
Q 011394 203 LIAEAYDVLKSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 280 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~--~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~ 280 (487)
++.|++.++++.| ++ .+.+..+++...... ....++..++.+.+. ..+|.+.. +.++.|++
T Consensus 228 ~~~E~~~va~a~G-i~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~ 290 (313)
T PRK06249 228 LMAEVIQGAAACG-HTLPEGYADHMLAVTERMP--DYRPSMYHDFEEGRP-----LELEAIYA---------NPLAAARA 290 (313)
T ss_pred HHHHHHHHHHhcC-CCCChhHHHHHHHHhhcCC--CCCChHHHHHHCCCc-----ccHHHHhh---------HHHHHHHH
Confidence 7899999999998 76 222333332211111 112233344443322 36777765 58999999
Q ss_pred cCCCchhHHHH
Q 011394 281 LSVAAPTIASS 291 (487)
Q Consensus 281 ~gv~~P~~~~a 291 (487)
+|+|+|+....
T Consensus 291 ~Gi~~P~~~~l 301 (313)
T PRK06249 291 AGCAMPRVEML 301 (313)
T ss_pred hCCCCcHHHHH
Confidence 99999987653
No 79
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=2e-12 Score=125.32 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=130.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC---c-EEEEeC-ChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|||+|.||.+++..|+++|+ + |++++| ++++.+.+.+.. ++..+.+.++++++ +|+||+++|
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViiavp 75 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLAMP 75 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEecC
Confidence 589999999999999999998873 3 778887 477777776543 24556788888876 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccc--cCCCHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLM--PGGSFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~--~gg~~~~~~~ 158 (487)
+. ..+++++++.+.++ +++||+++.+..... +.+.+. .+..++ .+|-.. .....|. .+. ..++++..+.
T Consensus 76 ~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~~~ 148 (245)
T PRK07634 76 PS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHKET 148 (245)
T ss_pred HH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHHHH
Confidence 85 78899988888775 679999988864443 333332 222333 456332 2233454 332 3468888999
Q ss_pred HHHHHHHHhccCCCCCCeEEEeCC--chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYVSK--GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~G~--~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
++++|+.+|... ++.+ .-..+.+--+..++.+.++..+.++ +.+.| +++++..+++.
T Consensus 149 v~~lf~~~G~~~--------~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~ 207 (245)
T PRK07634 149 LQLILKGIGTSQ--------LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVI 207 (245)
T ss_pred HHHHHHhCCCEE--------EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 999999999742 3322 1122222223334555666666666 67778 99999888874
No 80
>PLN02256 arogenate dehydrogenase
Probab=99.47 E-value=5.8e-12 Score=125.39 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=114.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++....+.++++.. .+|+||+|+|..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~--~~a~~~------gv~~~~~~~e~~~~--~aDvVilavp~~ 103 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS--DIAAEL------GVSFFRDPDDFCEE--HPDVVLLCTSIL 103 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH--HHHHHc------CCeeeCCHHHHhhC--CCCEEEEecCHH
Confidence 34579999999999999999999999999999999642 222211 24456778877531 289999999975
Q ss_pred hhHHHHHHHH-hhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhh--hcCCCcc-cc-------CCC
Q 011394 85 APVDETIKTL-SAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGPSL-MP-------GGS 152 (487)
Q Consensus 85 ~~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~--a~~G~~i-~~-------gg~ 152 (487)
.+.+++.++ .+.+.++.+|+|.+++.-...+.+.+.+ ..+..|+.+ |+.|.+.+ ...+..+ .. +.+
T Consensus 104 -~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l-~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~ 181 (304)
T PLN02256 104 -STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVL-PEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGER 181 (304)
T ss_pred -HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhC-CCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCC
Confidence 788889888 6778899999999997644444444333 235678854 88877643 2233322 22 236
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCC
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSK 182 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~ 182 (487)
++.++.++++++.+|++ ++.+.+
T Consensus 182 ~~~~~~l~~l~~~lGa~-------v~~~~~ 204 (304)
T PLN02256 182 EARCERFLDIFEEEGCR-------MVEMSC 204 (304)
T ss_pred HHHHHHHHHHHHHCCCE-------EEEeCH
Confidence 78899999999999987 366654
No 81
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=3.2e-12 Score=125.14 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=110.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCH-HHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDP-ESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~-~e~~~~l~~advIi~~vp~~ 84 (487)
.+++|+|+|+|.||..+|+.|.++|+.|.+++++.............. ....+.+. .+.+. ++|+||++||-.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv---~d~~~~~~~~~~~~---~aD~VivavPi~ 75 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV---IDELTVAGLAEAAA---EADLVIVAVPIE 75 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc---ccccccchhhhhcc---cCCEEEEeccHH
Confidence 467999999999999999999999999977766655433222221100 01111222 33333 389999999986
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCh--hhhcCCC-c-cccCC--CHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE--EGARHGP-S-LMPGG--SFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~--~~a~~G~-~-i~~gg--~~~~~~ 157 (487)
++..+++++.+.+++|.+|+|.++..-...+...+...+.. +|++. |++|.+ .....+. . ++++. +.+.++
T Consensus 76 -~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~ 153 (279)
T COG0287 76 -ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVE 153 (279)
T ss_pred -HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHH
Confidence 78999999999999999999999998665555544443334 89976 888873 3334555 3 34443 467889
Q ss_pred HHHHHHHHHhcc
Q 011394 158 YIEDILLKVAAQ 169 (487)
Q Consensus 158 ~v~~ll~~ig~~ 169 (487)
.+..+++.+|++
T Consensus 154 ~~~~~~~~~ga~ 165 (279)
T COG0287 154 EVKRLWEALGAR 165 (279)
T ss_pred HHHHHHHHcCCE
Confidence 999999999987
No 82
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.44 E-value=6.6e-13 Score=109.40 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=77.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCC---CcEEEE-eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||||||.|+||.+|++.|.++| ++|.++ +|++++.+++.++.. +.... +..|+++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 7999999999999999999999 999955 999999999887653 34445 78999998 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
. ++.+++.++ +...++++|||..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 5 899999999 77889999999875
No 83
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.44 E-value=2.3e-12 Score=122.82 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=110.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc-C--CCCcc-ccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE-G--DLPLF-GFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~-g--~~~~~-~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+||| +|.||..++..|+++|++|.+++|++++++.+.+..... + +.... ...+..+.++. +|+||+++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 999999999999999999999999999988776542110 0 00011 12355666666 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh---------------HHHHHHHHHHcCCeEEec-CCCCCh----hhhc
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---------------TERREKAMAELGLLYLGM-GVSGGE----EGAR 142 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~i~~-pvsgg~----~~a~ 142 (487)
.. ++.++++++.+.+. +++|||+++..+.+ ++.+++.+.. +.+++-+ |..... ....
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCC
Confidence 75 68888888877664 58999999886541 1223333321 1344432 322111 1111
Q ss_pred CCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCeEEEeCCchhh
Q 011394 143 HGP-SLMPGGSFEAYKYIEDILLKV-AAQVPDSGPCVTYVSKGGSG 186 (487)
Q Consensus 143 ~G~-~i~~gg~~~~~~~v~~ll~~i-g~~~~~~~~~~~~~G~~G~g 186 (487)
.+. .+++|.++++.+.+..|.+.+ |..+ +.+|+.-.+
T Consensus 155 ~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~a 193 (219)
T TIGR01915 155 VDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLENA 193 (219)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhhH
Confidence 233 456676788889999999999 8764 777764333
No 84
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=5.2e-12 Score=138.03 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=112.7
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..|+|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~~- 436 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSIL- 436 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCChH-
Confidence 4579999999999999999999999999999999653 333222 24456788887652 289999999974
Q ss_pred hHHHHHHHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCC---Cc-----cccCCCHHH
Q 011394 86 PVDETIKTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHG---PS-----LMPGGSFEA 155 (487)
Q Consensus 86 ~v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G---~~-----i~~gg~~~~ 155 (487)
.+..+++++.. .+++|.+|+|++++. ....+..+.+...+..|+ .+|++|.+.+ ..| .. .+++++.+.
T Consensus 437 ~~~~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~ 514 (667)
T PLN02712 437 STEKVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRR 514 (667)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcch
Confidence 78888888775 578899999999987 333344444445577888 7799988754 233 11 234455544
Q ss_pred H---HHHHHHHHHHhccCCCCCCeEEEeCC
Q 011394 156 Y---KYIEDILLKVAAQVPDSGPCVTYVSK 182 (487)
Q Consensus 156 ~---~~v~~ll~~ig~~~~~~~~~~~~~G~ 182 (487)
. +.+..+++.+|++ ++.+.+
T Consensus 515 ~~~~~~l~~l~~~lGa~-------vv~ms~ 537 (667)
T PLN02712 515 VSRCDSFLDIFAREGCR-------MVEMSC 537 (667)
T ss_pred HHHHHHHHHHHHHcCCE-------EEEeCH
Confidence 4 4455888888876 466654
No 85
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.43 E-value=4.2e-12 Score=124.94 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=126.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~~ 69 (487)
.++|||||.|.||..+|..++..||+|.++|++++.+++...... ..|.. +++.++++.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~--- 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA--- 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH---
Confidence 468999999999999999999988999999999876544322111 00100 3344444442
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecCCCCChhhhcCC
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMGVSGGEEGARHG 144 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pvsgg~~~a~~G 144 (487)
+++||+||.+|+....++.-+ .++....+++.|+-..+++.|.+ ++++.+.. -|.||+..|...--.
T Consensus 80 -l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV----- 151 (307)
T COG1250 80 -LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV----- 151 (307)
T ss_pred -hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE-----
Confidence 344999999999998887554 66666666666655444433332 34444421 167777654211100
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 145 PSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 145 ~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
-++.| .++++++.+.++.+.+++. | .+...-.|. +.|.+ ....+.|++.+..+.. .+++++
T Consensus 152 -EvI~g~~T~~e~~~~~~~~~~~igK~-----~---vv~~D~pGF----i~NRi---l~~~~~eA~~l~~eGv-a~~e~I 214 (307)
T COG1250 152 -EVIRGEKTSDETVERVVEFAKKIGKT-----P---VVVKDVPGF----IVNRL---LAALLNEAIRLLEEGV-ATPEEI 214 (307)
T ss_pred -EEecCCCCCHHHHHHHHHHHHHcCCC-----C---EeecCCCce----ehHhH---HHHHHHHHHHHHHhCC-CCHHHH
Confidence 13444 2789999999999999953 1 233334444 44554 4556699999999887 999999
Q ss_pred HHHHH
Q 011394 223 QNVFT 227 (487)
Q Consensus 223 ~~v~~ 227 (487)
..++.
T Consensus 215 D~~~~ 219 (307)
T COG1250 215 DAAMR 219 (307)
T ss_pred HHHHH
Confidence 99874
No 86
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.41 E-value=2.6e-12 Score=118.33 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=109.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
||+|+|+|.|+||.++|++|++.||+|++-+|+.+ +.+...+.... . ....+++++++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~-i~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----L-ITGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----c-cccCChHHHHhc---CCEEEEeccHH-
Confidence 68999999999999999999999999999966544 44444433221 2 234577788887 99999999986
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCc---h------------hHHHHHHHHHHc----CCeEEecCCCCChhhhcC-CC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWY---E------------NTERREKAMAEL----GLLYLGMGVSGGEEGARH-GP 145 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~---~------------~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~-G~ 145 (487)
.+..++.++...+. |+||||+++..+ . .++.+++.+... .++-+.+...-. .+.. +.
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~--~~~~~~~ 148 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLAD--LAKPGGR 148 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhcc--CCCcCCc
Confidence 78888888888775 999999999621 1 122222222111 223333322211 1112 33
Q ss_pred --ccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhH
Q 011394 146 --SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGN 187 (487)
Q Consensus 146 --~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~ 187 (487)
.+++|.|.++.+.+.+|.+.+|-.. +-+|+...+.
T Consensus 149 ~~v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a~ 185 (211)
T COG2085 149 RDVLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENAR 185 (211)
T ss_pred eeEEEecCcHHHHHHHHHHHHhcCcce-------eecccccccc
Confidence 5667778899999999999998763 6667644333
No 87
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.39 E-value=2.8e-11 Score=118.37 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=121.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+|+||.+|+..|.+++. +|+++||++++. + ...+.++.++++. +|+||+|+|+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~-------~~~~~~~~~~~~~---~D~Vilavkp 67 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------P-------FVYLQSNEELAKT---CDIIVLAVKP 67 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------C-------eEEeCChHHHHHh---CCEEEEEeCH
Confidence 689999999999999999999873 499999987542 1 2345677787776 9999999996
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCCc-cccC--CCHHHHHHH
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGPS-LMPG--GSFEAYKYI 159 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~~-i~~g--g~~~~~~~v 159 (487)
. ++++++.++.+++.++.+|.++++..... +.+.+.. ....+ -+|- -+.....|.+ +..+ .+++..+.+
T Consensus 68 ~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~-~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v 140 (260)
T PTZ00431 68 D-LAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGV-EAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKV 140 (260)
T ss_pred H-HHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCC-CCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHH
Confidence 4 89999999998886655666666554322 2222221 11121 2231 1222334553 3333 256778899
Q ss_pred HHHHHHHhccCCCCCCeEEEeCC-chhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 160 EDILLKVAAQVPDSGPCVTYVSK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 160 ~~ll~~ig~~~~~~~~~~~~~G~-~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
+.+|+.+|......|..+-.+.. .|+|. ++.+.++..+.++ +.+.| ++.++..++..
T Consensus 141 ~~l~~~~G~~~~v~E~~~d~~ta~~gsgP-------A~~~~~~~al~~~---~v~~G-l~~~~a~~l~~ 198 (260)
T PTZ00431 141 IDIFSACGIIQEIKEKDMDIATAISGCGP-------AYVFLFIESLIDA---GVKNG-LNRDVSKNLVL 198 (260)
T ss_pred HHHHHhCCcEEEEChHHcchhhhhcCCHH-------HHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999643222222222211 34444 5666777777777 56778 99999888874
No 88
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.38 E-value=1.5e-12 Score=112.28 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=87.2
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccc-cccccCCCCchhHHhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 262 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~-l~~~~~~~~~~~l~~i~ 262 (487)
|+|+.+|+++|.+...++.+++|++.++++.| +|++++.+++ +.+.+.|+.++...+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788889999888763 444 4688999999999
Q ss_pred hccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 263 DKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 263 ~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
||+. ++++.|.+.|+|+|+...+ .+.+..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9997 9999999999999998865 5555443
No 89
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.37 E-value=3.1e-11 Score=120.37 Aligned_cols=194 Identities=14% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|||||+|+||.++|++|.+.|++|.+++++.++........ ++.. .+++++++. +|+|+++||+. .
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~-~s~~eaa~~---ADVVvLaVPd~-~ 85 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEV-LTVAEAAKW---ADVIMILLPDE-V 85 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCee-CCHHHHHhc---CCEEEEcCCHH-H
Confidence 35899999999999999999999999999988766554443322 2333 388888887 99999999986 4
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh-----hcCCC-ccc-cCCC--HHH
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG-----ARHGP-SLM-PGGS--FEA 155 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~-----a~~G~-~i~-~gg~--~~~ 155 (487)
...++ +++.+.+++|++|+.++...... .+.....++..+ -+|-..+..- ...|. .++ +..+ .++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~----~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a 161 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAFAHGFNIHF----GQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNA 161 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCChhh----ceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHH
Confidence 58888 78999999999986665533111 111122344444 4575555411 12454 444 5554 788
Q ss_pred HHHHHHHHHHHhccCCCCCCeEEEeCCc---hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 011394 156 YKYIEDILLKVAAQVPDSGPCVTYVSKG---GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEEL 222 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~~~~~~~~~~~G~~---G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i 222 (487)
.+.+..+++.+|.....--+..+ -.+. =-|..+ .+-.+...++..++.++...| ++|+..
T Consensus 162 ~~~a~~l~~aiG~~~~g~~~ttf-~~e~~~dl~geq~-----vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 162 KDLALAYAKGIGGTRAGVIETTF-KEETETDLFGEQA-----VLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHHcCCCccceeeeee-cccccccchhhHH-----HHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 99999999999975310000000 0000 001111 233346677888899999999 999864
No 90
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.37 E-value=2.2e-12 Score=135.55 Aligned_cols=118 Identities=16% Similarity=0.302 Sum_probs=98.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHhhCC-CCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARI---WKGGCIIRAVFLDRIKKAYDRNA-DLANL 399 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---w~~Gcii~s~ll~~~~~~~~~~~-~~~~l 399 (487)
.+++|++||+||+++|+.|++++|+|.+++++ .++|..++.++ |+.| ..+|+++++...++..++ .-+..
T Consensus 181 ~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~f 254 (493)
T PLN02350 181 GGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDGY 254 (493)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCCc
Confidence 48999999999999999999999999999863 24898887777 9988 689999999888876543 22256
Q ss_pred cCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCch
Q 011394 400 LVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLA--YFDSYRRERLP 449 (487)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~--~~~~~~~~~~~ 449 (487)
++|...++..+|++| ||++..|.++|+|+|+|++++. |.++++.+|..
T Consensus 255 ~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 255 LVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred hHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 777778888889999 9999999999999999999995 66777776554
No 91
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.37 E-value=1.6e-11 Score=122.88 Aligned_cols=255 Identities=12% Similarity=0.082 Sum_probs=149.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hh---cCCC-Cccc-cCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KK---EGDL-PLFG-FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~---~g~~-~~~~-~~s~~e~~~~l~~advIi~~ 80 (487)
.|||+|||+|.||.-+|..|+++|++|++++|.+++++.+.+.+ -. .+.. .... ..+.++ +...|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~----~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADA----AEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccc----ccccCEEEEE
Confidence 47999999999999999999999999999999988888776542 10 0000 0011 111111 2238999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCC-ChhhhcCCC-ccccCC-CH
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSG-GEEGARHGP-SLMPGG-SF 153 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsg-g~~~a~~G~-~i~~gg-~~ 153 (487)
++.. +++++++.+.+.+.++.+|+-.-|+... .+.+.+.+... |+.++++-.-+ |.. ...|. .+..|. +.
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v-~~~~~g~~~~G~~~~ 154 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLGS-QDAVAARVPHARCIFASSTEGAFRDGDWRV-VFAGHGFTWLGDPRN 154 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCCcEEEEEeeeceecCCCCEE-EEeceEEEEEcCCCC
Confidence 9986 6888999999999999999999888732 23343433221 22222221111 110 01122 222332 22
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHH------------------HHHHHHHHHHHHHHHHhC
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVG 215 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~------------------~~~~~~~~Ea~~l~~~~g 215 (487)
+..+.+.++|..-+.+ +.+..+.-...+.|++.|... ..+..++.|++.++++.|
T Consensus 155 ~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 155 PTAPAWLDDLREAGIP-------HEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred cchHHHHHHHHhcCCC-------CccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 3345566666654432 122333555667777766421 134677899999999998
Q ss_pred CCCH--HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 216 KLTN--EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 216 ~i~~--~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
++. +.+.+.+........ ....++..++.+.+. ..+|.+.. ..++.|+++|+|+|.....
T Consensus 228 -~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 -QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred -CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 762 223333221111111 111233344444322 35666654 5789999999999987753
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.36 E-value=3.8e-12 Score=114.82 Aligned_cols=99 Identities=22% Similarity=0.411 Sum_probs=81.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC---C----CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG---D----LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g---~----~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+...... + .++..++++++++++ +|+|++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 7999999999999999999999999999999999998887554210 0 146678899999887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.. ..+++++++.++++++.+||.++.+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCc
Confidence 985 78999999999999999999998776
No 93
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.35 E-value=1.8e-11 Score=135.44 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=131.3
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|++||++++.++...+.. ...+. .+++++++++++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF- 390 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 346899999999999999999999999999999998765432211 11100 045666666543
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.++|...+++. ++.++.+.++++.|+...|++.|.+ ++++.+... |.||+..| .+.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV---- 461 (715)
T PRK11730 391 ER---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (715)
T ss_pred cC---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE----
Confidence 43 9999999999877774 4578888887877776555554433 344444321 55665443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-|+.| .++++++.+..+++.+|+.+ +.+. ...|. +.|.+... .+.|++.+.+ .| .+++
T Consensus 462 ---Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pGf----v~nRi~~~---~~~ea~~lv~-~G-a~~e 521 (715)
T PRK11730 462 ---EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPGF----FVNRVLFP---YFAGFSQLLR-DG-ADFR 521 (715)
T ss_pred ---EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCch----hHHHHHHH---HHHHHHHHHH-cC-CCHH
Confidence 24555 37899999999999999763 5554 34454 55666444 4589998876 46 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 522 ~ID~a~~ 528 (715)
T PRK11730 522 QIDKVME 528 (715)
T ss_pred HHHHHHH
Confidence 9999874
No 94
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.35 E-value=2.2e-11 Score=134.49 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=132.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+.. +++.+.+.+++
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 390 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF- 390 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-
Confidence 4568999999999999999999999999999999987665432210 11000 45556666443
Q ss_pred hhcCCCcEEEEecCCChhHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.+||....++ +++.++.+.++++.|+...|++.+.+ +++..+.. .|.||+..| ++.-.
T Consensus 391 ~~---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv---- 461 (714)
T TIGR02437 391 DN---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV---- 461 (714)
T ss_pred cC---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE----
Confidence 43 999999999987777 45578888888887776655554333 34444432 155666443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-|+.| .++++++.+..+++.+++.+ +.+.+ ..|. +.|.+... .+.|++.+.+ .| .+++
T Consensus 462 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGf----i~NRl~~~---~~~ea~~l~~-eG-~~~~ 521 (714)
T TIGR02437 462 ---EVIRGEKSSDETIATVVAYASKMGKTP-------IVVND-CPGF----FVNRVLFP---YFGGFSKLLR-DG-ADFV 521 (714)
T ss_pred ---eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeCC-cccc----hHHHHHHH---HHHHHHHHHH-CC-CCHH
Confidence 14444 37899999999999999763 55653 4554 55776444 4599999986 46 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 522 ~ID~a~~ 528 (714)
T TIGR02437 522 RIDKVME 528 (714)
T ss_pred HHHHHHH
Confidence 9999874
No 95
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.35 E-value=1.6e-11 Score=135.93 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=132.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh-------hcCCC----------CccccCCHHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGDL----------PLFGFRDPESFV 68 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~~----------~~~~~~s~~e~~ 68 (487)
...+|+|||+|.||..||..++.+|++|+++|++++.+++..+... ..+.. +++.+++.+++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~- 412 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF- 412 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 3468999999999999999999999999999999988665432211 00000 45666666543
Q ss_pred hhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEecC-CCCChhhhc
Q 011394 69 NSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGMG-VSGGEEGAR 142 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-vsgg~~~a~ 142 (487)
++ ||+||.+|+....++. ++.++.+.++++.|+...|++.+. .++++.+.. -|.||+..| ++.-.
T Consensus 413 ~~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~ig~Hff~P~~~m~Lv---- 483 (737)
T TIGR02441 413 KN---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI--KDIAAVSSRPEKVIGMHYFSPVDKMQLL---- 483 (737)
T ss_pred cc---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCccceEEEeccCCcccCceE----
Confidence 33 9999999999887774 457888888888777655544433 344444432 155666443 11111
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
-++.| .++++++.+..+++.+++.+ +.+++ ..|. +.|.+. ...+.|++.+.++ | ++++
T Consensus 484 ---Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pGF----i~NRi~---~~~~~ea~~lv~e-G-v~~~ 543 (737)
T TIGR02441 484 ---EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPGF----YTTRCL---GPMLAEVIRLLQE-G-VDPK 543 (737)
T ss_pred ---EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCCc----hHHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 24444 47899999999999999763 56654 4454 556654 4556999999864 6 8999
Q ss_pred HHHHHHHh
Q 011394 221 ELQNVFTE 228 (487)
Q Consensus 221 ~i~~v~~~ 228 (487)
+++.++..
T Consensus 544 ~ID~a~~~ 551 (737)
T TIGR02441 544 KLDKLTTK 551 (737)
T ss_pred HHHHHHHH
Confidence 99998643
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.33 E-value=4.4e-11 Score=133.80 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=116.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.+.. .....+..++++. +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 68999999999999999999999 4899999999987776543321 1134566676665 99999999975
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh--------hcCCC-c-ccc--CCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG--------ARHGP-S-LMP--GGS 152 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~--------a~~G~-~-i~~--gg~ 152 (487)
.+.++++.+.+.++++.+|+|++++.......+.+.+....++|+ +.|++|++.. ...+. . +.+ +++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 789999999998889999999999886666666555544467777 5688877531 11233 2 333 357
Q ss_pred HHHHHHHHHHHHHHhcc
Q 011394 153 FEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~ 169 (487)
++.++.++++|+.+|.+
T Consensus 155 ~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 155 PAALARVDRLWRAVGAD 171 (735)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 88899999999999975
No 97
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.33 E-value=3.6e-11 Score=132.73 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~ 67 (487)
.+++|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. .+++.++++++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 381 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-
Confidence 3568999999999999999998 58999999999998655433211 00000 04556666654
Q ss_pred HhhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCC-CChhhh
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVS-GGEEGA 141 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvs-gg~~~a 141 (487)
+++ ||+||.++|...+++. ++.++.+.++++.|+...|++.+.+ ++++.+... |.||+..|-. .-.
T Consensus 382 ~~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV--- 453 (699)
T TIGR02440 382 FKD---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV--- 453 (699)
T ss_pred hcc---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE---
Confidence 343 9999999999877774 5577878887777776555544332 344444321 5566644311 111
Q ss_pred cCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 011394 142 RHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTN 219 (487)
Q Consensus 142 ~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~ 219 (487)
-|+.| .++++++.+..+++.+|+.+ +.+.+ ..|. +.|.+.. ..+.|++.+.+ .| +++
T Consensus 454 ----Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~d-~pGf----i~nRl~~---~~~~Ea~~l~~-~G-~~~ 512 (699)
T TIGR02440 454 ----EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVAD-KAGF----YVNRILA---PYMNEAARLLL-EG-EPV 512 (699)
T ss_pred ----EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEcc-ccch----HHHHHHH---HHHHHHHHHHH-CC-CCH
Confidence 24544 37899999999999999763 55643 4554 4566544 45699999887 56 899
Q ss_pred HHHHHHHH
Q 011394 220 EELQNVFT 227 (487)
Q Consensus 220 ~~i~~v~~ 227 (487)
++++.++.
T Consensus 513 ~dID~a~~ 520 (699)
T TIGR02440 513 EHIDKALV 520 (699)
T ss_pred HHHHHHHH
Confidence 99998874
No 98
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.32 E-value=6e-12 Score=116.01 Aligned_cols=147 Identities=16% Similarity=0.309 Sum_probs=95.7
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cCCC----------CccccCCHHHHHhhc
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EGDL----------PLFGFRDPESFVNSI 71 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g~~----------~~~~~~s~~e~~~~l 71 (487)
||+|||+|.||..+|..++.+|++|.+||++++.++...+.... .+.. ++..++++++++ +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876554332111 0100 466778888887 4
Q ss_pred CCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHH--c--CCeEEecCCCCChhhhcCCC-
Q 011394 72 QKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAE--L--GLLYLGMGVSGGEEGARHGP- 145 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~pvsgg~~~a~~G~- 145 (487)
+|+||.++|....++. ++.++.+.++++.++...|++.+. .+++..+.. + |+||+..|-. -+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~--------~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHL--------MPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT----------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEeccccccc--------Cce
Confidence 9999999999877764 457788888888887766666533 334443321 1 5666654311 11
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhcc
Q 011394 146 -SLMPG--GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 146 -~i~~g--g~~~~~~~v~~ll~~ig~~ 169 (487)
-++.| .++++++.+..+++.+|+.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 24554 3789999999999999875
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.31 E-value=2e-12 Score=111.42 Aligned_cols=111 Identities=17% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+||+|||.|++|..|++.|.++||+|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd 79 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD 79 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH
Confidence 357999999999999999999999999975 5899888777765432 1344566777766 99999999997
Q ss_pred hhHHHHHHHHhhc--ccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAY--MEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
++..+.++|... ..+|++|+++|...+.+..+ .+.++|...
T Consensus 80 -aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~---p~~~~Ga~~ 122 (127)
T PF10727_consen 80 -AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLA---PARERGAIV 122 (127)
T ss_dssp -HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGH---HHHHTT-EE
T ss_pred -HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhh---hHHHCCCeE
Confidence 899999999987 78999999999987665443 345566544
No 100
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.31 E-value=7.7e-11 Score=119.73 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=104.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.++|+|||+ |.||..+|+.|.+. |++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 468999999 99999999999964 899999998511 23466777776 99999999975
Q ss_pred hhHHHHHHHHhhc---ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChh-hhcCCC-ccc-cCCCHHHHH
Q 011394 85 APVDETIKTLSAY---MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEE-GARHGP-SLM-PGGSFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~-~a~~G~-~i~-~gg~~~~~~ 157 (487)
.+.++++++.+. ++++.+|+|.++++....+. +.+.+..|++. |++|.+. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~----~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA----MLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH----HHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899888875 78999999999987433332 23446679976 8888754 334566 444 444556678
Q ss_pred HHHHHHHHHhcc
Q 011394 158 YIEDILLKVAAQ 169 (487)
Q Consensus 158 ~v~~ll~~ig~~ 169 (487)
.++.+++.+|++
T Consensus 138 ~v~~l~~~~Ga~ 149 (370)
T PRK08818 138 WVQSLCSALQAE 149 (370)
T ss_pred HHHHHHHHcCCE
Confidence 899999999987
No 101
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=1.2e-10 Score=127.39 Aligned_cols=153 Identities=14% Similarity=0.158 Sum_probs=107.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++|||||+|.||..+|+.|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~- 119 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII- 119 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-
Confidence 3579999999999999999999999999999998554 222222 24556788886531 289999999974
Q ss_pred hHHHHHHHHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhh--hcCCC-cccc----CCCH---
Q 011394 86 PVDETIKTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEG--ARHGP-SLMP----GGSF--- 153 (487)
Q Consensus 86 ~v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~--a~~G~-~i~~----gg~~--- 153 (487)
.+..+++++. +.++++.+|+|++++.......+... ...+..|+.. |+.|.+.. ...+. .++. +.+.
T Consensus 120 ~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~-l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~ 198 (667)
T PLN02712 120 STENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDY-LPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRV 198 (667)
T ss_pred HHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHh-cCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccH
Confidence 7888998875 67888999999998874333333332 2346778854 88877631 22333 3333 2222
Q ss_pred HHHHHHHHHHHHHhccC
Q 011394 154 EAYKYIEDILLKVAAQV 170 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~ 170 (487)
+.++.+.++++.+|+++
T Consensus 199 ~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 199 SRCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 34566779999999873
No 102
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.30 E-value=5.7e-11 Score=131.45 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=130.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhh-------hhcCC----------CCccccCCHHHH
Q 011394 6 QLTRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KKEGD----------LPLFGFRDPESF 67 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~----------~~~~~~~s~~e~ 67 (487)
...+|+|||+|.||..||..++ .+|++|++||++++.++...+.. ...+. .+++.+++.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 386 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG- 386 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-
Confidence 3568999999999999999999 88999999999988655432211 00000 04556666643
Q ss_pred HhhcCCCcEEEEecCCChhHHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhc
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGAR 142 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~ 142 (487)
+++ ||+||.++|....++. ++.++.+.++++.|+...|++.+.+ ++++.+... |.||+..|-.-
T Consensus 387 ~~~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~------ 455 (708)
T PRK11154 387 FKH---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKM------ 455 (708)
T ss_pred hcc---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccC------
Confidence 344 9999999999877764 4578888888888877665555433 344444321 45555433110
Q ss_pred CCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Q 011394 143 HGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNE 220 (487)
Q Consensus 143 ~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~ 220 (487)
.-.-|+.| .++++++.+..+++.+|+.+ +.+.+ ..|. +.|.+. ...++|++.++++ | ++++
T Consensus 456 ~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~d-~pGf----i~nRl~---~~~~~EA~~lv~e-G-v~~~ 518 (708)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTP-------IVVRD-GAGF----YVNRIL---APYINEAARLLLE-G-EPIE 518 (708)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEec-cCcH----HHHHHH---HHHHHHHHHHHHc-C-CCHH
Confidence 00024554 37899999999999999763 55543 4454 445554 4555999999886 6 8999
Q ss_pred HHHHHHH
Q 011394 221 ELQNVFT 227 (487)
Q Consensus 221 ~i~~v~~ 227 (487)
+++.++.
T Consensus 519 dID~a~~ 525 (708)
T PRK11154 519 HIDAALV 525 (708)
T ss_pred HHHHHHH
Confidence 9998864
No 103
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.30 E-value=2e-10 Score=114.54 Aligned_cols=257 Identities=17% Similarity=0.195 Sum_probs=159.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcC-CCC-----ccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEG-DLP-----LFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g-~~~-----~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++.+.+-..- ..+ ...+.+.+. . ..+|+||++|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~-~---~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEA-L---GPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhh-c---CCCCEEEEEe
Confidence 6899999999999999999999999999999876 777776542110 001 111122222 2 2399999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCC--hhhhcCCC-c--cccCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGG--EEGARHGP-S--LMPGGS 152 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg--~~~a~~G~-~--i~~gg~ 152 (487)
++. ++++++..+.+.+.+.+.|+..-|+.. ..+.+.+.+... |+.++++--.+. ......|. . .+.|+.
T Consensus 76 Ka~-q~~~al~~l~~~~~~~t~vl~lqNG~g-~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 76 KAY-QLEEALPSLAPLLGPNTVVLFLQNGLG-HEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred ccc-cHHHHHHHhhhcCCCCcEEEEEeCCCc-HHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCc
Confidence 987 799999999999999999998888873 333444444332 222222221111 11111233 1 234556
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHH---------------------HHHHHHHHHHHHHHHHH
Q 011394 153 FEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 153 ~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N---------------------~~~~~~~~~~~Ea~~l~ 211 (487)
++.++.+.++|+.-+.+. .+..+.-...+.|++.| .......+++.|...++
T Consensus 154 ~~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~ 226 (307)
T COG1893 154 DELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVA 226 (307)
T ss_pred hHHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHH
Confidence 677888888887666542 33344666677777666 34445667889999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHH
Q 011394 212 KSVGKLT--NEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIA 289 (487)
Q Consensus 212 ~~~g~i~--~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~ 289 (487)
.+.| +. .+.+.+++........ ....++..+..+.+. -.+|.+.. ..++.|+++|+++|+..
T Consensus 227 ~~~g-~~~~~~~~~~v~~~~~~~~~-~~~sSM~qDl~~gr~-----tEid~i~G---------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 227 RAEG-VELPEEVVERVLAVIRATDA-ENYSSMLQDLEKGRP-----TEIDAING---------AVVRLAKKHGLATPVND 290 (307)
T ss_pred Hhcc-CCCCHHHHHHHHHHHHhccc-ccCchHHHHHHcCCc-----ccHHHHhh---------HHHHHHHHhCCCCcHHH
Confidence 9887 55 3223333322222211 111122333333221 35677755 47899999999999977
Q ss_pred HHHHHH
Q 011394 290 SSLDAR 295 (487)
Q Consensus 290 ~a~~~r 295 (487)
. ++..
T Consensus 291 ~-L~~l 295 (307)
T COG1893 291 T-LYAL 295 (307)
T ss_pred H-HHHH
Confidence 5 3443
No 104
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.17 E-value=6.6e-10 Score=110.98 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=99.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|+||.++|++|.++|++|+++++. +++.+.+.+.+ +.. .++.++++. +|+|++++|+..+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~G-------v~~-~s~~ea~~~---ADiVvLaVpp~~~ 72 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDG-------FKV-GTVEEAIPQ---ADLIMNLLPDEVQ 72 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCC-------CEE-CCHHHHHhc---CCEEEEeCCcHhH
Confidence 57999999999999999999999998876554 44555544322 333 457888877 9999999998656
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhh---h--cCCC-ccc-cC--CCHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEG---A--RHGP-SLM-PG--GSFEAY 156 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~---a--~~G~-~i~-~g--g~~~~~ 156 (487)
...+++++.+.+.++. +|..+.+..- ......+ ..+...+ -||-..+..- - ..|. +++ ++ -+.+..
T Consensus 73 ~~~v~~ei~~~l~~g~-iVs~aaG~~i--~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~ 148 (314)
T TIGR00465 73 HEVYEAEIQPLLKEGK-TLGFSHGFNI--HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAM 148 (314)
T ss_pred HHHHHHHHHhhCCCCc-EEEEeCCccH--hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHH
Confidence 6767778888888776 5555555422 2222222 2344444 6776655420 0 2454 443 33 366778
Q ss_pred HHHHHHHHHHhcc
Q 011394 157 KYIEDILLKVAAQ 169 (487)
Q Consensus 157 ~~v~~ll~~ig~~ 169 (487)
+.+..+++.+|..
T Consensus 149 ~~~~~~~~~iG~~ 161 (314)
T TIGR00465 149 AIALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHHHcCCC
Confidence 8999999999964
No 105
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.13 E-value=7.5e-09 Score=99.46 Aligned_cols=246 Identities=14% Similarity=0.169 Sum_probs=169.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHH---------------hhhhcCCCCccccCCHHHHHh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVE---------------RAKKEGDLPLFGFRDPESFVN 69 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~---------------~~~~~g~~~~~~~~s~~e~~~ 69 (487)
|+||..||+|++|.+.+..++-+- .+|++.|.+..++.+... +-. +.++-..++.+..+.
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr---gknlffstdiekai~ 77 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR---GKNLFFSTDIEKAIK 77 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc---CCceeeecchHHHhh
Confidence 579999999999999888887653 488899999887654432 111 114556778888887
Q ss_pred hcCCCcEEEEecCCCh--------------hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHH--HcCCeE--Ee
Q 011394 70 SIQKPRVIIMLVKAGA--------------PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMA--ELGLLY--LG 131 (487)
Q Consensus 70 ~l~~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--i~ 131 (487)
. +|+||++|-++. .+++....+.......+||+.-||+.....+.+...+. .+|++| +.
T Consensus 78 e---adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqils 154 (481)
T KOG2666|consen 78 E---ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILS 154 (481)
T ss_pred h---cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEecc
Confidence 7 999999996552 23344456666667789999999999888888887774 346655 45
Q ss_pred cCCCCChhhhc---CCC-ccccCC--CHHHHHHHHHH---HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHH
Q 011394 132 MGVSGGEEGAR---HGP-SLMPGG--SFEAYKYIEDI---LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQ 202 (487)
Q Consensus 132 ~pvsgg~~~a~---~G~-~i~~gg--~~~~~~~v~~l---l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~ 202 (487)
-|-+-.+..|. ..| .++.|| +++-.+.++.| ++.+--+ . -+.....-+++..|++.|++.+--+.
T Consensus 155 npeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~-----~-~iittntwsselsklaanaflaqris 228 (481)
T KOG2666|consen 155 NPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPR-----E-QIITTNTWSSELSKLAANAFLAQRIS 228 (481)
T ss_pred ChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcc-----c-ceeeccccHHHHHHHHHHHHHHHHHh
Confidence 55443332222 234 567787 45555555544 4443321 1 23445678999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcC
Q 011394 203 LIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLS 282 (487)
Q Consensus 203 ~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~g 282 (487)
.++-+.++|+..| .|..++...+. +-.++..+.+...-.|+++++-+.++.. +.....+|
T Consensus 229 sins~salceatg-adv~eva~avg---------~d~rig~kfl~asvgfggscfqkdilnl----------vyice~ln 288 (481)
T KOG2666|consen 229 SINSMSALCEATG-ADVSEVAYAVG---------TDSRIGSKFLNASVGFGGSCFQKDILNL----------VYICECLN 288 (481)
T ss_pred hhHHHHHHHHhcC-CCHHHHHHHhc---------ccccccHHHhhcccCcCchhHHHHHHHH----------HHHHhcCC
Confidence 9999999999999 99888877652 1123444555555568888887777653 45666667
Q ss_pred CC
Q 011394 283 VA 284 (487)
Q Consensus 283 v~ 284 (487)
+|
T Consensus 289 lp 290 (481)
T KOG2666|consen 289 LP 290 (481)
T ss_pred Ch
Confidence 65
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=99.13 E-value=1.2e-09 Score=111.81 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=92.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+|||+....+..... ++....+++|+++. ||+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999986432222111 23445789999887 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ ++.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 9998 5688889999999999999999998998888876544
No 107
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.12 E-value=4.7e-10 Score=103.08 Aligned_cols=195 Identities=16% Similarity=0.204 Sum_probs=127.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-------cC--CC-------------CccccCCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-------EG--DL-------------PLFGFRDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-------~g--~~-------------~~~~~~s~ 64 (487)
++.|+|||.|.||+.||+.-+..|++|.++|++++.+.+..+.... .+ .. +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 4579999999999999999999999999999999876554332110 00 00 34456677
Q ss_pred HHHHhhcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH----cCCeEEec-CCCCCh
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE----LGLLYLGM-GVSGGE 138 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~-pvsgg~ 138 (487)
.+++.+ +|+||.++-....++.-+ ..+.... +...++-..|++...+ +++..++. .|.||+.. ||+.-.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~a-k~~~il~tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIA-KSSTILATNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhc-ccceEEeecccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777776 899998887665555444 4444444 4445554555543333 33333322 37888865 665444
Q ss_pred hhhcCCCccccCCCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011394 139 EGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLT 218 (487)
Q Consensus 139 ~~a~~G~~i~~gg~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~ 218 (487)
+-.+.. -.+++.+..+..+-+.+|+.. +.+ ..-.| .+.|.+ .+-.+.|++++.++.- .+
T Consensus 166 EVir~~-----~TS~eTf~~l~~f~k~~gKtt-------Vac-kDtpG----FIVNRl---LiPyl~ea~r~yerGd-As 224 (298)
T KOG2304|consen 166 EVIRTD-----DTSDETFNALVDFGKAVGKTT-------VAC-KDTPG----FIVNRL---LIPYLMEAIRMYERGD-AS 224 (298)
T ss_pred hhhcCC-----CCCHHHHHHHHHHHHHhCCCc-------eee-cCCCc----hhhhHH---HHHHHHHHHHHHHhcC-Cc
Confidence 422221 136888999888888898753 333 22334 345554 5666799999999987 89
Q ss_pred HHHHHHHHH
Q 011394 219 NEELQNVFT 227 (487)
Q Consensus 219 ~~~i~~v~~ 227 (487)
.+++...+.
T Consensus 225 keDIDtaMk 233 (298)
T KOG2304|consen 225 KEDIDTAMK 233 (298)
T ss_pred HhhHHHHHh
Confidence 999988763
No 108
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.11 E-value=8.3e-10 Score=111.35 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=92.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+++|+.|...|++|.+||++++..... .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653321 1235688898887 99999999988777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
..++ .++.+.+++|.++|+++.+.--+...+.+.+.+..+.....-|+
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~ 261 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence 7776 57788899999999999998888888888887654444433343
No 109
>PLN03139 formate dehydrogenase; Provisional
Probab=99.10 E-value=2e-09 Score=110.16 Aligned_cols=112 Identities=14% Similarity=0.078 Sum_probs=93.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|.+|.+||++....+...+. ++....+++++++. +|+|++++|...+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 489999999999999999999999999999985433322221 23455689999987 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
+.++ .+++..+++|.++|+++.+..-+...+.+.+++..+..
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~G 312 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGG 312 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceE
Confidence 9988 56888899999999999999889888988887765543
No 110
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.06 E-value=1.5e-08 Score=100.61 Aligned_cols=243 Identities=16% Similarity=0.186 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhc----CCC---CccccCCHHHHHhhcCCCcEEEEecCCChhHHHH
Q 011394 18 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKE----GDL---PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDET 90 (487)
Q Consensus 18 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~----g~~---~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 90 (487)
||..+|..|+++|++|++++|+ ++.+.+.+.+... ++. .+...+++++ .. ..|+||+++|.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~---~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LP---PADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cC---CCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 6666666544210 000 1122233444 22 489999999987 78999
Q ss_pred HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc----CCeEEecCCCCChhhhcCCC-ccccCC---CHHHHHHHHHH
Q 011394 91 IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL----GLLYLGMGVSGGEEGARHGP-SLMPGG---SFEAYKYIEDI 162 (487)
Q Consensus 91 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pvsgg~~~a~~G~-~i~~gg---~~~~~~~v~~l 162 (487)
++.+.+.+.++.+||...|+.. ..+.+.+.+... |+.++++-..+...-...+. .+..|. +.+..+.+.++
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~g-~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGLG-HEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCCC-CHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 9999999999999999888863 233344444221 12222221111100011122 233332 22344556666
Q ss_pred HHHHhccCCCCCCeEEEeCCchhhHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHHhCCCCH--
Q 011394 163 LLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLTN-- 219 (487)
Q Consensus 163 l~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~---------------------~~~~~~~~~~Ea~~l~~~~g~i~~-- 219 (487)
|+..+-+ +....+.-...+.|++.|. .......++.|+..++++.| ++.
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6654432 2333334555556665553 33455677899999999988 763
Q ss_pred HHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHH
Q 011394 220 EELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIAS 290 (487)
Q Consensus 220 ~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~ 290 (487)
+.+.+.+.........+ ..++..++...+. ..+|.+.. +.++.|+++|+|+|....
T Consensus 227 ~~~~~~~~~~~~~~~~~-~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAEN-TSSMLQDLLRGRR-----TEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCCC-CChHHHHHHcCCc-----chHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 33444443322211111 1122233333221 25666654 578999999999998765
No 111
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.02 E-value=1.1e-09 Score=98.30 Aligned_cols=118 Identities=22% Similarity=0.215 Sum_probs=85.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|++.| ++|+++||++++.+++.+...... ......+.++++++ +|+||+|+|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 468999999999999999999996 799999999999888776543100 00124456666555 999999999875
Q ss_pred h-HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 P-VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. ++.+... ...++++.+++|+++..+ .+ .+.+.+++.|++|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~-~~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPL-ET-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCC-CC-HHHHHHHHCCCceeCC
Confidence 3 2222211 123578999999998854 44 7777888888877754
No 112
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.02 E-value=1.9e-09 Score=108.97 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=90.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+.|...|++|.+|||++.... ....+ .. ..++++++++ +|+|++++|...++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~-------~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELG-------AE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcC-------CE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999865432 11111 22 4578998887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 8888 5788889999999999999999998888888765443
No 113
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.99 E-value=9e-09 Score=96.49 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=88.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++++.+... .... +.+++... ++|+++.|.....-.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v-~~~~l~~~--~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVV-APEEIYSV--DADVFAPCALGGVIN 99 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-cchhhccc--cCCEEEecccccccC
Confidence 58999999999999999999999999999999998888776421 2333 33445442 399999776544222
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe-cCC-CCChhhhcCCCccccCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG-MGV-SGGEEGARHGPSLMPGGS 152 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv-sgg~~~a~~G~~i~~gg~ 152 (487)
+..+ +.+ +.++|++.+|....+ .+..+.++++|+.|++ ... +||.. .+-..|+++.
T Consensus 100 ~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv~---~~~~e~~~~~ 157 (200)
T cd01075 100 DDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGLI---NVADELYGGN 157 (200)
T ss_pred HHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCce---eehhHHhCCc
Confidence 3333 334 468999999986543 5677889999999996 444 55422 2223455554
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.99 E-value=4e-09 Score=106.67 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=87.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.||+.+|+.|+ ..|.+|.+||+++.... . .. +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-~~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-TY-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H-hh-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 58999999999999999994 46889999999875421 1 11 2345689999887 9999999998877
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
.+.++ .+..+.+++|.++|++|++...++..+.+.+.+..+.
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 77665 4677889999999999999999999998888765443
No 115
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.98 E-value=1.4e-08 Score=99.21 Aligned_cols=138 Identities=20% Similarity=0.361 Sum_probs=93.5
Q ss_pred HHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhccc
Q 011394 22 LALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYME 99 (487)
Q Consensus 22 lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~ 99 (487)
+|+.|.++| ++|++||++++..+...+.+.. ....+..+.+.+ +|+||+|+|.. .+..+++++.+++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------~~~~~~~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII------DEASTDIEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------SEEESHHHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------eeccCCHhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 688899999 7999999999988776665431 222222456665 99999999975 78999999999999
Q ss_pred CCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCCh----hhh----cCCC-cc-ccCC--CHHHHHHHHHHHHHH
Q 011394 100 KGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGE----EGA----RHGP-SL-MPGG--SFEAYKYIEDILLKV 166 (487)
Q Consensus 100 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~----~~a----~~G~-~i-~~gg--~~~~~~~v~~ll~~i 166 (487)
+|.+|+|.+++.-.......+.+ ..++.|++. |++|.+ ..+ ..|. .+ +++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~-~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLL-PEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHH-TSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhc-CcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 99999999999865555444443 367899976 877762 122 2455 33 3333 567899999999999
Q ss_pred hccC
Q 011394 167 AAQV 170 (487)
Q Consensus 167 g~~~ 170 (487)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9873
No 116
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.98 E-value=3e-09 Score=105.79 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=90.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 57999999999999999888889999999998432 111 0124589999887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+.++ .+.+..+++|.++|++|.+...+...+.+.+.+..+.....-|+
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8887 56778899999999999999999999988887754443333333
No 117
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.96 E-value=3.4e-09 Score=106.05 Aligned_cols=111 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||+++++...+. ......+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~---------~~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ---------SFAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------eecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 5899999999999999999999999999999765422111 01124578888887 99999999999899
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9888 467788999999999999988888888888877655433
No 118
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.94 E-value=4.4e-09 Score=96.84 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=87.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.|..-|.+|.+|||+..........+ + ...+++|+.+. +|+|++++|...+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333222 2 45699999998 99999999977777
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7766 5677889999999999999888888888888765444
No 119
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.92 E-value=5.6e-09 Score=102.91 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=70.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||.++|++|...|++|++||+.....+.....+ +.. .+++|+++. +|+|++++|++. .
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~~-t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDEQ-Q 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCChH-H
Confidence 5799999999999999999999999999997644333332222 333 489999988 999999999864 5
Q ss_pred HHHH-HHHhhcccCCCEEEecC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~s 108 (487)
+.++ +++++.+++|.+++-.-
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 7777 57899999999877543
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.91 E-value=1.4e-08 Score=99.84 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=89.9
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++.+++||||||+|.||..++.+|.+. +++|. +|||++++.+++.++... ...+++++++.+. +|+|++
T Consensus 2 ~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~-----~~~~~~~eell~~---~D~Vvi 73 (271)
T PRK13302 2 SSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRR-----PPPVVPLDQLATH---ADIVVE 73 (271)
T ss_pred CCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCC-----CcccCCHHHHhcC---CCEEEE
Confidence 344557999999999999999999873 77776 889999998877765321 2457789999776 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE-EecCCCCCh
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY-LGMGVSGGE 138 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pvsgg~ 138 (487)
|+|+. ...++.... +..|+.|+..+.......+++.+.+++.|..+ +..+-.+|-
T Consensus 74 ~tp~~-~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 74 AAPAS-VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred CCCcH-HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 99986 445554444 45677666666665556677777788888776 444444443
No 121
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.87 E-value=2.8e-08 Score=91.58 Aligned_cols=195 Identities=16% Similarity=0.258 Sum_probs=127.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-----------hhhhcCCC-------CccccCCHHHHHh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-----------RAKKEGDL-------PLFGFRDPESFVN 69 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~g~~-------~~~~~~s~~e~~~ 69 (487)
-||||+|.|.+|+..|..|++.||+|..||..++.+....+ .+.-.|++ .+..++++.|+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 47999999999999999999999999999999876533221 12111111 3557889999999
Q ss_pred hcCCCcEEEEecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCC--c
Q 011394 70 SIQKPRVIIMLVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGP--S 146 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~--~ 146 (487)
. +=.|-.|+|.+-.++.-+ .++-+.+ ...+|+..||+....+ ...+-+..+.-..+..||-... .=| -
T Consensus 84 ~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy----fiPLvE 154 (313)
T KOG2305|consen 84 G---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY----FIPLVE 154 (313)
T ss_pred h---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc----ccchhe
Confidence 7 778888999887666554 4444444 4556666666544433 2333333333334555542110 011 1
Q ss_pred cccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 011394 147 LMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQN 224 (487)
Q Consensus 147 i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~ 224 (487)
+++. .+++.+++.+.+.+++|.++ +.+-.+. .| .+.|.+.+++. +|.+.|+...+ ++..+++.
T Consensus 155 lVPaPwTsp~tVdrt~~lM~sigq~p------V~l~rei-~G----f~lnriq~Ail---ne~wrLvasGi-l~v~dvD~ 219 (313)
T KOG2305|consen 155 LVPAPWTSPDTVDRTRALMRSIGQEP------VTLKREI-LG----FALNRIQYAIL---NETWRLVASGI-LNVNDVDA 219 (313)
T ss_pred eccCCCCChhHHHHHHHHHHHhCCCC------ccccccc-cc----ceeccccHHHH---HHHHHHHHccC-cchhhHHH
Confidence 2333 47889999999999999764 3333332 22 23466666554 99999998877 99888888
Q ss_pred HH
Q 011394 225 VF 226 (487)
Q Consensus 225 v~ 226 (487)
++
T Consensus 220 Vm 221 (313)
T KOG2305|consen 220 VM 221 (313)
T ss_pred HH
Confidence 86
No 122
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.86 E-value=1.8e-07 Score=87.82 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=134.4
Q ss_pred CCcEEEEcccHH--------------------HHHHHHHHHHCCCcEEEEeCChHHHHHH-HHhhhhcCCCCccccCCHH
Q 011394 7 LTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKKEGDLPLFGFRDPE 65 (487)
Q Consensus 7 ~~kIgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~l-~~~~~~~g~~~~~~~~s~~ 65 (487)
||||+|.|+|+. |..||..++++||+|.+.|+|.+-.+.- -++.... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 579999999974 7789999999999999999886644322 2233322 477888888
Q ss_pred HHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHH-HHHHH--Hc--CCe-EEecCCCCChh
Q 011394 66 SFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERR-EKAMA--EL--GLL-YLGMGVSGGEE 139 (487)
Q Consensus 66 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~-~~~l~--~~--g~~-~i~~pvsgg~~ 139 (487)
+.++. +++.++.+|-+...-.+.+.++++++.|.+|.++.|++|...-.- ...++ .+ |+. +..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 999999999998888889999999999999999999887654332 22332 12 332 22334444332
Q ss_pred hhcCCCccccC--------CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 140 GARHGPSLMPG--------GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 140 ~a~~G~~i~~g--------g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
+|..++.| .+++..+++.++.++.|+. .|+-+.---+.+-=..-.+....++.+.+-+...
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~--------~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKE--------VYVLPADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCc--------eEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333332 2578889999999999976 3443322222222222345566777888888887
Q ss_pred HHhCCCCHHHHH
Q 011394 212 KSVGKLTNEELQ 223 (487)
Q Consensus 212 ~~~g~i~~~~i~ 223 (487)
.+.-|.+.+.+.
T Consensus 224 ~qIi~AP~eMIe 235 (340)
T COG4007 224 TQIIGAPKEMIE 235 (340)
T ss_pred HHHhCCcHHHHH
Confidence 765435554443
No 123
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.83 E-value=6.9e-07 Score=86.59 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=116.1
Q ss_pred CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 30 GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 30 G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
.++|.+|+|++++.+.+.+.. ++..+.+..++++. +|+||+||+ +.++++++.++.+.+.++++||++..
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988887653 24567788888887 999999999 56899999999887777899999998
Q ss_pred CCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCC-ccccCC--CHHHHHHHHHHHHHHhccCCCCCCeEEEeCC--c
Q 011394 110 EWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGP-SLMPGG--SFEAYKYIEDILLKVAAQVPDSGPCVTYVSK--G 183 (487)
Q Consensus 110 ~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~-~i~~gg--~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~--~ 183 (487)
+.+.. .+.+.+.. +...+ -+|-. +.....|. .+..+. +++..+.++.+|+.+|.. +++.+ .
T Consensus 79 gi~~~--~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~E~~~ 145 (245)
T TIGR00112 79 GVTLE--KLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV--------VELPEALM 145 (245)
T ss_pred CCCHH--HHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE--------EEECHHHc
Confidence 87443 34444422 22333 45643 23334566 344442 566778899999999964 33322 1
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFT 227 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~ 227 (487)
-....+--+..++.+.++..+.++ +.+.| +++++..++..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 111111123346677777777776 56678 99999988874
No 124
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.82 E-value=6e-08 Score=94.30 Aligned_cols=151 Identities=17% Similarity=0.186 Sum_probs=109.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|||||.|+||+-+|..|.++||.|.++||+. .+.+++..+ ....+.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 479999999999999999999999999999986 455555443 3457788888875 599999999764 68
Q ss_pred HHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcC--CCcccc----CCC----HHH
Q 011394 88 DETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARH--GPSLMP----GGS----FEA 155 (487)
Q Consensus 88 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~--G~~i~~----gg~----~~~ 155 (487)
+.++...-+. ++.|++++|..+..........+.+ .+.+..+.+ |+.|....-.. |-.++. .|. ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYL-PkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYL-PKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhC-ccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888666555 7889999999988755554455554 346667755 55554312222 222221 233 778
Q ss_pred HHHHHHHHHHHhccC
Q 011394 156 YKYIEDILLKVAAQV 170 (487)
Q Consensus 156 ~~~v~~ll~~ig~~~ 170 (487)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 888999999888763
No 125
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.80 E-value=2.7e-08 Score=106.61 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=90.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||+.... +...+. ++...++++|+++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 47999999999999999999999999999986322 111111 23445689999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999989988888765543
No 126
>PLN02928 oxidoreductase family protein
Probab=98.79 E-value=7.3e-08 Score=97.97 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=88.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH--------HhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~--------~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++|||||+|.||+.+|+.|...|.+|++|||+..+..... ..... ......++++++++ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999743211100 00000 00134588899887 999999
Q ss_pred ecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
++|.....+.++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 999887888887 5777889999999999998888888888888765443
No 127
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.77 E-value=3.8e-08 Score=105.52 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=89.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.||+.+|++|...|++|.+||++... +..... ++... +++|+++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 57999999999999999999999999999986432 111211 13334 89999887 99999999998888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 8888 578888999999999999999999889888876544
No 128
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.77 E-value=3.1e-08 Score=87.81 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=65.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.|..|.+.|+||.++|++|.+..|..+ ..+...+.| +. ..+.+|+++. +|+|++.+|+. .
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~-~ 72 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE-V 72 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-H
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-H
Confidence 4799999999999999999999999999998877 444444433 33 4588899887 99999999985 4
Q ss_pred HHHHH-HHHhhcccCCCEEEecC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~s 108 (487)
..+++ +++.|.|++|++++-..
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESS
T ss_pred HHHHHHHHHHhhCCCCCEEEeCC
Confidence 56666 88999999999887654
No 129
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.75 E-value=3.4e-08 Score=100.99 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=87.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 85 (487)
++|||||+|+||+.+|+.+...|++|.+||+.....+ . .....++++++++ ||+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5799999999999999999999999999998643211 1 1234589999887 999999999754
Q ss_pred --hHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 86 --PVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 86 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
....++ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 355666 56778899999999999999888888888887654433333343
No 130
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.75 E-value=5.9e-08 Score=97.33 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=89.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|..+..-|++|.+||+...+-..... ......+++++.++ +|+|++.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 48999999999999999999999999999994333211111 24457789999998 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
+.++ .+.+..+++|.++|+++-+.--+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 8888 566778999999999999988888888888876433
No 131
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.72 E-value=1.4e-07 Score=92.54 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=82.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--Cc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||||||||+|.||..++..+.+.+ ++ +.++|+++++.+++.+.. +...+++++++..+ +|+|++|+|+
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASV 71 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCCh
Confidence 479999999999999999998763 55 557999999988877643 24567889998755 9999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCCh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGE 138 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pvsgg~ 138 (487)
. ...+....++ ..|..++..|+. .+...+++.+.+++.|.. +++.+..+|-
T Consensus 72 ~-~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~ 126 (265)
T PRK13304 72 N-AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGL 126 (265)
T ss_pred H-HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhH
Confidence 5 4555554444 455555556652 334455666666777755 4444444443
No 132
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.70 E-value=9.3e-08 Score=99.26 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=90.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++|+++. ||+|++++|.....
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 479999999999999999999999999999874311 01 13345689999988 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga 261 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGA 261 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEE
Confidence 8888 567788999999999999998899889888877655433
No 133
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.70 E-value=1.4e-07 Score=94.58 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=87.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+|||..... .. .+ ...+++++.+. ||+|++++|-....
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999999999999999964321 11 12 24589999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ ++.+..+++|.++|+++-+..-+...+.+.+++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 5677889999999999999888888888888765554
No 134
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=93.96 Aligned_cols=112 Identities=15% Similarity=0.200 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +....+ ++|++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 5899999999999999999977889999999875 1222221 123344 9999998 99999999999888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..++ .+.+..+++|.++|+++-+..-+...+.+.+++..+.-.+
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gag 259 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAG 259 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEE
Confidence 8888 5677889999999999999988998899988876444333
No 135
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.68 E-value=6.7e-08 Score=97.09 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.||..++..+.. ...+|.+|||++++.+++.++.... +.++..+.++++++++ +|+|+.+.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~ 198 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATL 198 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeC
Confidence 445689999999999999986654 4478999999999999998764321 0125567888888877 999988888
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... .++.. +.+++|. +|++.+..+...+++...+.+++..|+|.
T Consensus 199 s~~---pvl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 199 STE---PLVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred CCC---CEecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 653 33321 4567888 66777777677777766666666677765
No 136
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.67 E-value=2.9e-07 Score=91.08 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=80.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||+|.||..+|+.|...|.+|+++||++++.+.+.+.+.. .....++.+++++ +|+||.++|..- +
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~i-i 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPALV-L 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChHH-h
Confidence 489999999999999999999999999999999876665433211 1112344555554 999999998651 1
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. .+..+.++++.+|||.++.. ..+. . +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~P-g~td-f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKP-GGTD-F-EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCC-CCCC-H-HHHHHCCCEEEEeC
Confidence 1 34556678899999999865 3332 2 45577888877655
No 137
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.67 E-value=3.9e-07 Score=91.73 Aligned_cols=108 Identities=14% Similarity=0.181 Sum_probs=86.8
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|||||+|.+|+.+|+.+. .-|.+|.+||+...... .... +.. ..+++++.+. ||+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 58999999999999999997 77889999998743211 1111 122 3489999887 9999999998888
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 88888 567788999999999999988888888888876544
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.63 E-value=3.3e-07 Score=91.93 Aligned_cols=105 Identities=11% Similarity=0.163 Sum_probs=86.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... .. . ....+++++.+. ||+|++++|-....
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~--------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R--------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c--------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999999999999986421 10 0 124579999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+..+ .+.+..+++|.++|+++-+.--+...+.+.+.+..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 5677889999999999999888888888888765443
No 139
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.63 E-value=4.5e-07 Score=91.13 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=86.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... . . . ...+++++.+. +|+|++++|-....
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----R-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----c-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 48999999999999999999999999999986321 0 0 1 13479999887 99999999988888
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+.++ .+.+..+++|.++|+++-+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 5677889999999999999888888888888765443
No 140
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.63 E-value=1.4e-07 Score=96.23 Aligned_cols=105 Identities=11% Similarity=0.156 Sum_probs=83.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
++|||||+|+||+.+|+.|...|.+|.+||+..... .. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~------~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR------GD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc------cc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 589999999999999999999999999999753210 10 0124689999887 9999999986542
Q ss_pred ---HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 87 ---VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 87 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
...++ .+.+..+++|.++|+++-+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55556 567788999999999999988888888888876543
No 141
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.59 E-value=1.3e-07 Score=93.02 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=62.4
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 479999996 999999999999999999998652 256677776 9999999998876
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.++ +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66544 78999999999654
No 142
>PLN02306 hydroxypyruvate reductase
Probab=98.51 E-value=1.2e-06 Score=90.09 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=91.0
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCcEEEEeCChHH-HHHHHHhhh----hcCC--CCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAK----KEGD--LPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~l~~~~~----~~g~--~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+..... ..+. .+.....+++|+++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 57999999999999999986 679999999998642 221111100 0000 011224589999887 999999
Q ss_pred ecCCChhHHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 80 LVKAGAPVDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 80 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
++|-....+.++ .+.+..+++|.++|+++-+.--+...+.+.+++..+.....-|+-
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 999887888888 567788999999999999888888888888876544433334443
No 143
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.48 E-value=2e-06 Score=87.56 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=91.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~v 81 (487)
||+|-|||+|.+|+.+|..|+++| ++|++-||++++.+++...... ++++ ..+.+.+.+-+++.|+||.++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 679999999999999999999999 8999999999999988765311 1111 223334444444589999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
|... -..+++.. ++.|..++|+|...+.. .++.+.+.+.|+..+ ++++..|..
T Consensus 77 p~~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 77 PPFV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred Cchh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 9763 33444433 55789999999887665 677777788887765 677766643
No 144
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.47 E-value=6e-07 Score=80.11 Aligned_cols=97 Identities=18% Similarity=0.313 Sum_probs=72.5
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCC----c---cccCCHHHHHhhcCCCcEEEEecC
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLP----L---FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~----~---~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|.|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.+...-... + ....+..+... .+|+||+|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777766542100000 0 01111212333 3999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.. +++++++.+.+.+.+++.|+...|+.
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~ 104 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGM 104 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCC
Confidence 86 78999999999999998888888886
No 145
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.44 E-value=4.1e-06 Score=71.50 Aligned_cols=111 Identities=17% Similarity=0.284 Sum_probs=80.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+||||||+|.+|......+.+. +.+|. ++|+++++.+.+.+.. ++..++|.+++.+. ++.|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 4899999999999999898877 44554 7899999998886654 35688999999884 2489999999987
Q ss_pred hhHHHHHHHHhhcccCC-CEEEec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 85 APVDETIKTLSAYMEKG-DCIIDG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
...+-+...+ ..| .++++- -...+.+.+++.+..++.|..+
T Consensus 74 ~h~~~~~~~l----~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKAL----EAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHH----HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHH----HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 6544443332 234 455552 2234567777777777777653
No 146
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.43 E-value=1.4e-06 Score=86.57 Aligned_cols=106 Identities=21% Similarity=0.267 Sum_probs=88.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|||+|+|.+|+.+|++|...|..+.-++|++...+...+... . ..+.++++.+ +|+|++++|....+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHHH
Confidence 58999999999999999999999555556777766665554432 1 5588888887 99999999999999
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (487)
..++ .++...+.+|.+||+++-+..-+-+.+.+.+.+
T Consensus 232 ~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 9998 578889999999999999988888888877765
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.41 E-value=1.6e-06 Score=86.38 Aligned_cols=112 Identities=18% Similarity=0.128 Sum_probs=79.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
-+|++|||+|.+|..++..|...|.+|+++||++++.+.....+.. .....++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~-----~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLS-----PFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCe-----eecHHHHHHHhCC---CCEEEECCChhh-
Confidence 3589999999999999999999999999999998876655443211 1112344555554 999999998642
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+-++....++++.+|||.++.... +. . +..+++|+..+.++
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLAP 263 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEEC
Confidence 224556678899999999876533 32 2 34566788777653
No 148
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.39 E-value=1.2e-06 Score=86.15 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=82.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA- 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~- 85 (487)
.+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ ... ..+.++.. +.++|+||.|+|.+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~-~~~~~~~~--~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQ-AFSMDELP--LHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceE-Eechhhhc--ccCccEEEECCCCCCC
Confidence 457999999999999999999999999999999999888876542211 111 22333322 224899999999752
Q ss_pred -hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 -PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 -~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.++.+.- ....+.++.+++|+++..+.+ .+.+..+++|..+++.
T Consensus 192 ~~~~~~~~-~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 192 GNIDEPPV-PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCCCC-CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 1211100 123467899999999876554 4677778888877643
No 149
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.38 E-value=3.8e-06 Score=79.47 Aligned_cols=192 Identities=17% Similarity=0.194 Sum_probs=126.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC----cEEEEeCChHHHHH-HHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|+|||||.|+|...+++.+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 589999999999999999999985 56666553222222 2222 24455555777776 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhcCCCccccCC---CHHHHHH
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGARHGPSLMPGG---SFEAYKY 158 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~~G~~i~~gg---~~~~~~~ 158 (487)
+. .+..++.++.+.+..+++|+.+--+..-.+ +.+.+. ...+++ -+|-. +.....|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmpNt--p~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMPNT--PSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecCCC--hhhhhcCcEEEeeCCCcchhhHHH
Confidence 74 788888888777788999999877764333 333332 123333 22322 23334566544332 4556688
Q ss_pred HHHHHHHHhccCCCCCCeEEEe-CCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 159 IEDILLKVAAQVPDSGPCVTYV-SKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 159 v~~ll~~ig~~~~~~~~~~~~~-G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
++++|..+|.-....|+|+-.+ |-.|+|.+ +.+..+..+++. .-+.| ++++...++-
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmG-lPr~lA~~la 202 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMG-LPRQLAYRLA 202 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccC-CCHHHHHHHH
Confidence 9999999997655567777555 44788873 444555555555 55677 9988877764
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.34 E-value=2.4e-06 Score=85.79 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=68.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.|++.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 468999999999999999999866 6899999999998888775421 11122234454444 999999999875
Q ss_pred hHHHHHHHHhhcc-cCCCEEEecCC
Q 011394 86 PVDETIKTLSAYM-EKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~st 109 (487)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44444443332 35789999984
No 151
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.33 E-value=2.1e-06 Score=86.63 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...++||||+|.||...++.|.. ...+|.+|||++++.+.+.++.... +..+..+.++++++++ +|+|++|+
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT 200 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTT 200 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEec
Confidence 3445689999999999997666654 4569999999999998887654321 1125668899999987 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
|+... ++. ...+++|..|...++..|.
T Consensus 201 ~s~~P---~~~--~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 201 PSRKP---VVK--ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred CCCCc---Eec--HHHcCCCCEEEecCCCCcc
Confidence 87643 221 2346899999988877664
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=1.8e-06 Score=85.13 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=60.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEe-CChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 4799999 99999999999999999999995 653 24556666 999999999886
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.++.++ +.+|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998754
No 153
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.30 E-value=1.9e-06 Score=75.65 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=66.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|||+|-||+.++..|.+.|.+ |+++||+.++++++.+..... ...+...+++.+.... +|+||.++|.+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCC
Confidence 45899999999999999999999986 999999999999998775211 0012234455555555 999999999874
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st 109 (487)
. .+-+.......+. .+++|.+.
T Consensus 88 ~--~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P--IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T--SSTHHHHTTTCHHCSEEEES-S
T ss_pred c--ccCHHHHHHHHhhhhceecccc
Confidence 4 1112222222221 49999973
No 154
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.24 E-value=5.5e-05 Score=70.51 Aligned_cols=108 Identities=9% Similarity=0.102 Sum_probs=76.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|||+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 58999987 99999999999999999851 11 89999999975 5
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhhcCC---Ccccc--CCCHHHHHHHH
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGARHG---PSLMP--GGSFEAYKYIE 160 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a~~G---~~i~~--gg~~~~~~~v~ 160 (487)
+.++++++. .+|+|.++++.. +.+ .+..|++. |++| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~----i~~----~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWP----FKK----YSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHH----HHH----hcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 666666553 379999998743 211 24578876 7776 4444443 33333 34566778888
Q ss_pred HHHHHHhcc
Q 011394 161 DILLKVAAQ 169 (487)
Q Consensus 161 ~ll~~ig~~ 169 (487)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8887 554
No 155
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.23 E-value=6.6e-06 Score=82.51 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh----hhcC-CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEG-DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~----~~~g-~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+...... ...+ ..+++.+.+.++ +++ +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 6799999999999999999999876 9999999988764432211 1000 002333445544 344 9999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+..+. .++++++.+.+.. +..++|..||..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 73221 2344445666655 556777777654
No 156
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=4.4e-06 Score=81.70 Aligned_cols=74 Identities=15% Similarity=0.313 Sum_probs=61.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||.+++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 47999999 999999999999999999999311 2357777777 9999999998876
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++..+ +.+|.+|||+|...
T Consensus 215 v~~~~------ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKEF------VKEGAVVIDVGMNR 233 (284)
T ss_pred CCHHH------ccCCcEEEEeccee
Confidence 66543 78999999998654
No 157
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.12 E-value=1.8e-05 Score=79.45 Aligned_cols=119 Identities=12% Similarity=0.212 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+...+++|||+|.++...++.+..- --+|.+|||++++.+.+.+..... +.++..+++.+++++. +|+|++++
T Consensus 125 ~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT 200 (315)
T PRK06823 125 PQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTT 200 (315)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEec
Confidence 34456899999999999998887753 248999999999999888654322 1245668899999987 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHH-HHHHHcCCeEEec
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERRE-KAMAELGLLYLGM 132 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~i~~ 132 (487)
++... +++ ...+++|..|+..++..|..- ++. +.+.....-|+|.
T Consensus 201 ~s~~P---~~~--~~~l~~G~hi~~iGs~~p~~~-Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 201 PSREP---LLQ--AEDIQPGTHITAVGADSPGKQ-ELDAELVARADKILVDS 246 (315)
T ss_pred CCCCc---eeC--HHHcCCCcEEEecCCCCcccc-cCCHHHHhhCCEEEECC
Confidence 87643 332 135679999999988776433 333 3333333345554
No 158
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.11 E-value=1.6e-05 Score=79.41 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=84.5
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
...++||||+|.+|...++.++.- . -+|.+|||++++.+++.++.....+..+.+++++++++.. +|+|+++++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNS 192 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCC
Confidence 446899999999999998888764 2 3899999999999998876543111236678899999988 9999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... +++ ...+++|..|.-.++..|...+--.+.+.....-|+|.
T Consensus 193 ~~P---~~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 193 DTP---IFN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CCc---Eec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 643 332 23567898888888877644332233344333446664
No 159
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.11 E-value=1.8e-05 Score=79.92 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=82.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.+|...+..++. .+ -+|.+|||++++.+++.+......+..+..+.+.++++.+ +|+|++|+|
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~ 201 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTN 201 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccC
Confidence 344689999999999998887764 34 4899999999999988865422101123457788888876 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.... ++. ..+++|..|+..++..|...+.-.+.+.....-|+|.
T Consensus 202 s~~p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 202 AKTP---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCCc---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 7743 333 4578999999998877655433333333333345554
No 160
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.10 E-value=2.1e-05 Score=78.65 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=82.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|+|||+|.+|...+..++. .+ .+|.+|||++++.+++.++....+ ..+. +.+.++++++ +|+|+.|+|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~-~~~~-~~~~~~av~~---aDiVitaT~ 197 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG-PTAE-PLDGEAIPEA---VDLVVTATT 197 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-CeeE-ECCHHHHhhc---CCEEEEccC
Confidence 344689999999999999999975 45 479999999999999887653210 0122 5688888877 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.... +++. .+++|..|+..++..|...+--.+.+... --|+|.
T Consensus 198 s~~P---l~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 198 SRTP---VYPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred CCCc---eeCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 8753 3332 36899999999987765433222333332 345665
No 161
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.07 E-value=2.5e-05 Score=78.12 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=66.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+|.||..+|..++..|+ +|.++|++++..+... +...... ..+++.+.+.++ +++ +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 689999999999999999999887 8999999776543111 1111000 013555667776 344 99999999
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.+. .++++.+++.++. ++.+||..||..
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 7432 2334445666664 567888888754
No 162
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.06 E-value=1.5e-05 Score=77.24 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=69.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|+|||.|+-|.+-|+||.++|.+|++--|.... .+...+.| +. +.+++|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 48999999999999999999999999988776555 33333332 33 6689999997 99999999986 4
Q ss_pred HHHHHH-HHhhcccCCCEEEec
Q 011394 87 VDETIK-TLSAYMEKGDCIIDG 107 (487)
Q Consensus 87 v~~vl~-~l~~~l~~g~iiId~ 107 (487)
-.++++ ++.|.|++|+.+.-.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEec
Confidence 456664 899999999966543
No 163
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.06 E-value=5.4e-05 Score=70.35 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=77.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
++||+||+|.+|..+...+.+. ++ .|.+|||+.+++.++.+... ...+++++|+.+. +|+++.|...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~- 70 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASP- 70 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCH-
Confidence 5899999999999999877643 24 57799999999988876543 3456889999876 9999999865
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe--EEecCCCCCh
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL--YLGMGVSGGE 138 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~--~i~~pvsgg~ 138 (487)
+++++...+++.. ..+-+|+..+.-..+.-.++...+.+.+-. |+..+-.||-
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl 125 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL 125 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence 4666665554432 123345554444433333333334444433 3344445553
No 164
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.06 E-value=2.2e-05 Score=67.83 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=70.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH-CCCcEE-EEeCChH-HH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTS-KV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~-~~----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|||+|+|+ |.||+.++..+.+ .++++. ++|++++ .. .++.... ..++...++++++.+. +|+||-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 58999999 9999999999998 678755 6688872 11 1121111 1146678899999887 999988
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
... +..+...++... ..|..+|..+|+......+..+.+.++ +..+-+|
T Consensus 74 fT~-p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FTN-PDAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES--HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cCC-hHHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 873 345555555444 358888888888754444444444333 4444444
No 165
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.05 E-value=2.5e-05 Score=69.83 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=61.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
++.|+|.|..|+++|+.|...|-+|++++++|-+.-+....+ +. +.+.++++.. +|++|.++.....+.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~-v~~~~~a~~~---adi~vtaTG~~~vi~ 93 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FE-VMTLEEALRD---ADIFVTATGNKDVIT 93 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------E-EE-HHHHTTT----SEEEE-SSSSSSB-
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cE-ecCHHHHHhh---CCEEEECCCCccccC
Confidence 699999999999999999999999999999998766555443 33 3468888776 999999876643222
Q ss_pred HHHHHHhhcccCCCEEEecCCCC
Q 011394 89 ETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 89 ~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+..+.+++|.++.+.+...
T Consensus 94 ---~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 94 ---GEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp ---HHHHHHS-TTEEEEESSSST
T ss_pred ---HHHHHHhcCCeEEeccCcCc
Confidence 23455688999999888654
No 166
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.05 E-value=1.5e-05 Score=68.48 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=63.0
Q ss_pred cEEEEc-ccHHHHHHHHHHHHC-CCcEEEE-eCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
||+||| .|.+|..++..|.+. ++++... +++.++.+.+........ ... ...+..++.. .++|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFEE--LAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChhh--cCCCEEEEcCCcH
Confidence 699999 599999999999985 7877765 665544434333321100 010 0111122221 2499999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
....++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 45555555566678999999999875
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=98.00 E-value=2.8e-05 Score=82.82 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|+|||+|.||..++..|...|. +|+++||++++++.+.+..... ...+...++..+.+.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 4689999999999999999999997 7999999999999888753210 0011223455555555 999999987664
Q ss_pred h--HHHHHHHHhhcc---cCCCEEEecCC
Q 011394 86 P--VDETIKTLSAYM---EKGDCIIDGGN 109 (487)
Q Consensus 86 ~--v~~vl~~l~~~l---~~g~iiId~st 109 (487)
. ..+.++.+.+.- .+..++||.+-
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAv 370 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISV 370 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCC
Confidence 3 233333332211 12247888864
No 168
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.98 E-value=3.2e-05 Score=80.68 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=69.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|||.|.+|..+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 3799999999999999999999999999999987764433322 22 3467888776 9999998653
Q ss_pred HHHH-HHHhhcccCCCEEEecCCCC
Q 011394 88 DETI-KTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 88 ~~vl-~~l~~~l~~g~iiId~st~~ 111 (487)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3344 35667789999999998873
No 169
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.97 E-value=3.4e-05 Score=81.92 Aligned_cols=105 Identities=14% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++++|+|+|.+|.+++..|++.|++|+++||++++++.+.+.... . ..+.+++. .+.++|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~-~~~~~~~~-~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------K-AFPLESLP-ELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------c-eechhHhc-ccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999998887654311 1 11222221 13349999999998864
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+... +. .+++|+....+.+. +.+.++++|...+
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~ 436 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSII 436 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEE
Confidence 3321 11 38999988765543 5566777787655
No 170
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.96 E-value=4e-05 Score=77.51 Aligned_cols=99 Identities=10% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCcEEEEcccHHHHHHHHHHHH-CCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
...+++|||+|.+|...+..|+. .+. +|++|||++++.+++.++....-+..+...++++++++. +|+|+.|+|.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s 204 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPS 204 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCC
Confidence 34589999999999999999974 564 799999999999998876432101124456788888876 9999999987
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
... ++. ...+++|..|...+.-.|
T Consensus 205 ~~p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 205 ETP---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred CCc---Eec--HHHcCCCcEEEeeCCCCC
Confidence 643 332 134678988887776544
No 171
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.96 E-value=5.8e-05 Score=74.19 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--C-----CcEEEEeCChH------HHHHHHHhhhh-c----C---CCCccccCCHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVERAKK-E----G---DLPLFGFRDPES 66 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~l~~~~~~-~----g---~~~~~~~~s~~e 66 (487)
.||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+....... . + ..++.+.+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 4899999999999999998864 2 26777754332 33332221110 0 0 015677888888
Q ss_pred HHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 67 FVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 67 ~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+ +|+++..+|. +.+..++++|..+++++...|.++.+.
T Consensus 102 a~~d---ADilvf~vPh-Qf~~~ic~~l~g~vk~~~~aISL~KG~ 142 (372)
T KOG2711|consen 102 AAKD---ADILVFVVPH-QFIPRICEQLKGYVKPGATAISLIKGV 142 (372)
T ss_pred Hhcc---CCEEEEeCCh-hhHHHHHHHHhcccCCCCeEEEeecce
Confidence 8877 9999999997 478999999999999999999988765
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.96 E-value=7.7e-05 Score=74.43 Aligned_cols=87 Identities=17% Similarity=0.397 Sum_probs=61.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+.||+|||+|+||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++.. ++|+|++|+|+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~---~iDVViIctPs 70 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLD---DVDVLILCMGS 70 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhcc---CCCEEEEcCCC
Confidence 46999999999999999999876 67777 579985 4332 111 2233445555544 49999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
....+. ..+.+..|.-+|++..
T Consensus 71 ~th~~~----~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 71 ATDIPE----QAPYFAQFANTVDSFD 92 (324)
T ss_pred ccCHHH----HHHHHHcCCCEEECCC
Confidence 766443 3455668888888754
No 173
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.95 E-value=6.2e-05 Score=75.43 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=87.8
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+....++|||+|.++......+..- .-+|.+|+|+++..+++.......+...+..+.|.+++++. +|+|+.|+|
T Consensus 128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~ 204 (330)
T COG2423 128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATP 204 (330)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecC
Confidence 3446799999999999998888753 34899999999999998865443221135788899999998 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.. .++. ...+++|..|.-.++-.|...+--.+.+...+.-|+|.+
T Consensus 205 s~~---Pil~--~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 205 STE---PVLK--AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred CCC---Ceec--HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 875 3332 245779999988887665544333344444446677765
No 174
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.95 E-value=0.00011 Score=83.82 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-Cc-------------EEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS 70 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~ 70 (487)
.|++|+|||+|.||...+..|++.. ++ |++.|+++++++++.+..... ..+.. +.+.+++.+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKY 645 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHh
Confidence 4679999999999999999999763 33 999999999988877643110 01233 5677777765
Q ss_pred cCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCC
Q 011394 71 IQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVS 135 (487)
Q Consensus 71 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvs 135 (487)
++.+|+||.|+|..-. ..+.. ..+..|.-+++.+ .....+.++.+.+++.|+.++ +++..
T Consensus 646 v~~~DaVIsalP~~~H-~~VAk---aAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e~GlD 706 (1042)
T PLN02819 646 VSQVDVVISLLPASCH-AVVAK---ACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCEMGLD 706 (1042)
T ss_pred hcCCCEEEECCCchhh-HHHHH---HHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEECCccC
Confidence 5669999999998643 33333 2345678888887 334566677777778887766 44533
No 175
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=9.2e-05 Score=70.75 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-hhhhcCCCCccccCCHHHHHhh--cCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKKEGDLPLFGFRDPESFVNS--IQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-~~~~~g~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 84 (487)
|+|.|||+|.+|..+|+.|.+.||+|.+.|++++++++... ..... -+....+..++.++ +.++|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 68999999999999999999999999999999999988554 21110 12233333344332 45699999999876
Q ss_pred hhHHHHHHHHhhc-ccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAY-MEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~-l~~g~iiId~st~ 110 (487)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 566666555543 4445566555443
No 176
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.93 E-value=3.1e-05 Score=77.27 Aligned_cols=108 Identities=42% Similarity=0.701 Sum_probs=94.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhHhhhccccccccCCCCchhHHhhh
Q 011394 185 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVL 262 (487)
Q Consensus 185 ~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g-~i~~~~i~~v~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~l~~i~ 262 (487)
+|+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.+. ++||+++...+++.+++ .++.+.
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~~~~~~ 236 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------DLAEFS 236 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------cHHHHH
Confidence 3699999999999999999999999999984 3799998887 78876 69999999998887642 345677
Q ss_pred hccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhccc
Q 011394 263 DKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 263 ~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~~~ 301 (487)
+.+.++++++|++++|.+.|+|+|+++++++.|+.|..+
T Consensus 237 ~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 237 GRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 777789999999999999999999999999999988866
No 177
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.92 E-value=4.4e-05 Score=79.76 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......++.+.+.. +|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCC
Confidence 358999999999999999999999 7899999999988877765321 11122345555555 999999987764
Q ss_pred hHH--HHHHHHhhcccCCCEEEecC
Q 011394 86 PVD--ETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~--~vl~~l~~~l~~g~iiId~s 108 (487)
.+- +.+......-....+++|.+
T Consensus 253 ~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 253 PIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred ceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 321 12222111111234788886
No 178
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.91 E-value=2.1e-05 Score=80.81 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=91.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC------hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
++|+|||+|..|.+.|.+|...|++|++--|. .+.-+.+.+.+ +. ..+++|+++. +|+|++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 58999999999999999999999999944433 33333333322 33 3678898887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChhhhc---C--CC-ccc-cC---
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEEGAR---H--GP-SLM-PG--- 150 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~~a~---~--G~-~i~-~g--- 150 (487)
|+. .-..+.+++.+.+++|.++.-.- +.--. .......+++..+ -+|=..|+.-.+ . |. +++ +-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fsH-GFni~---~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYSH-GFNIV---EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEecC-Cceee---eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 987 45566689999999998876432 22100 0011123355444 456555543222 2 32 322 22
Q ss_pred -CCHHHHHHHHHHHHHHhcc
Q 011394 151 -GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 151 -g~~~~~~~v~~ll~~ig~~ 169 (487)
.+-.+.+.+...-..+|..
T Consensus 181 D~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCCchHHHHHHHHHHHhCCC
Confidence 2234566666666666653
No 179
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.91 E-value=0.0001 Score=76.04 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=73.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..+|+.+...|.+|+++|+++.+.......+ +. ..+++++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~-v~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CE-eCCHHHHHhc---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998765544332 22 2356777665 99999887643
Q ss_pred HHHHH-HHhhcccCCCEEEecCCCCc-hhHHHHHHH
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNEWY-ENTERREKA 121 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~ 121 (487)
.++. .....+++|.++++.+.... -+...+.+.
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~ 296 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL 296 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence 3443 46677889999999987654 344444443
No 180
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.90 E-value=7.4e-05 Score=75.70 Aligned_cols=100 Identities=15% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHH-CC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+..++|+|||+|.+|...+..+.. .+ .+|.+|||++++.+++.++.....+..+..+.++++++.+ +|+|+.++|
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~ 206 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTP 206 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeC
Confidence 344689999999999998888875 44 5899999999999999875432101123456788888876 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
.... ++.. ..+++|..|...++..|
T Consensus 207 s~~p---~i~~--~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 207 SEEP---ILKA--EWLHPGLHVTAMGSDAE 231 (330)
T ss_pred CCCc---EecH--HHcCCCceEEeeCCCCC
Confidence 7643 3321 23567887777665443
No 181
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.89 E-value=9.5e-05 Score=72.50 Aligned_cols=121 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||||||+|.||..+++.+.+. +.++. ++++... .+...+.... ++..+++++++ . .++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGE----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhcc----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 57999999999999999999876 45554 4444322 1111111110 24567888887 3 2499999999875
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC---CchhHHHHHHHHHHcCCe-EEecCCCCChh
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE---WYENTERREKAMAELGLL-YLGMGVSGGEE 139 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pvsgg~~ 139 (487)
...+.... .+..|.-++..++. .+....++.+..++.|.. |+..+..|+..
T Consensus 73 -~~~e~~~~---aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 73 -ALKEHVVP---ILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred -HHHHHHHH---HHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 34444333 34567666666654 232334555666666755 44555555543
No 182
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.89 E-value=4.7e-05 Score=78.20 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCCC-h
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKAG-A 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~~-~ 85 (487)
.+|.|||+|.+|...+..+...|.+|+++||++++.+.+...... .+. ...+.+++.+.++.+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 479999999999999999999999999999999988777654321 011 1223344444444599999997431 1
Q ss_pred hHHHHH-HHHhhcccCCCEEEecCC
Q 011394 86 PVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 445566788999999874
No 183
>PRK06046 alanine dehydrogenase; Validated
Probab=97.87 E-value=7.8e-05 Score=75.36 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+|||||+|.+|...+..|... + ..|.+|||++++.+++.++....-+..+..+++.+++++ +|+|++|+|
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTp 202 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTP 202 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecC
Confidence 3456899999999999999998853 3 378899999999988887543210112455778888774 899999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+... +++ ...+++|..|...++..|..
T Consensus 203 s~~P---~~~--~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 203 SRKP---VVK--AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred CCCc---Eec--HHHcCCCCEEEecCCCCCcc
Confidence 7643 332 13467999999888777643
No 184
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.85 E-value=4.2e-05 Score=80.10 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=65.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|+|||+|.||..++..|...|. +|+++||++++.+.+.+.... ......+..+.+. .+|+||.|++.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCC
Confidence 3689999999999999999999997 899999999998887765321 1122233444444 4999999998764
Q ss_pred hHH--HHHHHHhh-cccCCCEEEecCC
Q 011394 86 PVD--ETIKTLSA-YMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~--~vl~~l~~-~l~~g~iiId~st 109 (487)
.+- ..+..... .-..+.++||.+.
T Consensus 255 ~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 255 PIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred cEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 431 22222111 1124568888874
No 185
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.85 E-value=5.5e-05 Score=75.97 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
....+++|||+|..|...+..++.. + -+|.+|||++++.+++.++.... +..+..+++++++++. +|+|++|+|
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~ 201 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATP 201 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE---
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccC
Confidence 3446899999999999988887753 3 38999999999999998776532 2356788999999988 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
..... .+++ ...+++|..|+..++..|..
T Consensus 202 s~~~~-P~~~--~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 202 STTPA-PVFD--AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp -SSEE-ESB---GGGS-TT-EEEE-S-SSTTB
T ss_pred CCCCC-cccc--HHHcCCCcEEEEecCCCCch
Confidence 87510 2222 24678999999998877643
No 186
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.84 E-value=0.00019 Score=72.84 Aligned_cols=112 Identities=13% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCcEEEEcccHHH-HHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGLAVMG-QNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGlG~mG-~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~ 80 (487)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++++.++.. + ..++|.+++++. .+.|+|+++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~Ia 74 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYIA 74 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEc
Confidence 45799999999554 568888888763 46688999999998887653 3 478899999885 336999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecC--CCCchhHHHHHHHHHHcCCe
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGG--NEWYENTERREKAMAELGLL 128 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~ 128 (487)
+|+....+-++. .|..|+.|+.-= +..+.+.+++.+..+++|..
T Consensus 75 tp~~~H~e~~~~----AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~ 120 (342)
T COG0673 75 TPNALHAELALA----ALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120 (342)
T ss_pred CCChhhHHHHHH----HHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999877665543 345666555421 22335666666666665543
No 187
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=0.00012 Score=74.36 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+...+++|||+|..+...++.++.- --+|.+|||++++.+++.++.... +.++..++++++++++ +|+|+++++
T Consensus 127 ~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~ 202 (346)
T PRK07589 127 PDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTA 202 (346)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecC
Confidence 3446899999999998887766643 348999999999999888765432 1246678899999998 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchh
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN 114 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~ 114 (487)
+.. -..+++. +.+++|..|.-.++..|..
T Consensus 203 S~~-~~Pvl~~--~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 203 DKT-NATILTD--DMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred CCC-CCceecH--HHcCCCcEEEecCCCCCCc
Confidence 542 1123321 3568999888888766543
No 188
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.81 E-value=0.00012 Score=71.42 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
||||+|||+ |.||+.++..+.+. ++++. ++|+++++.... . ..++..+++++++.+. +|+|+.+.|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~------~~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G------ALGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C------CCCccccCCHHHhccC---CCEEEECCCH
Confidence 479999998 99999999988864 67766 589988765443 1 1135567788888765 9999988765
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~p 133 (487)
. ...+++.. .+..|.-++..+|+.. ....++.+ +. +++..+-+|
T Consensus 71 ~-~~~~~~~~---al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 71 E-ATLENLEF---ALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H-HHHHHHHH---HHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 4 34444433 3445666665565543 33333333 33 444444444
No 189
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.80 E-value=0.00017 Score=72.63 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=62.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHH--H--HHhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDE--T--VERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--l--~~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..++..+.+.+++ + +||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~---~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-A---GSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-C---CCCEEEECC
Confidence 589999999999999999999996 99999999885421 1 11100000 0134444566543 4 399999976
Q ss_pred CCC----h----------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAG----A----------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-.+ . .+.++.+.+.+.. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 221 1 1233345555555 445777777654
No 190
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.79 E-value=0.0002 Score=70.19 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHH-CCCcEE-EEeCC-hHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|+||+|+| +|.||+.+++.+.+ .++++. ++||+ +++.. .+.+..... ..++..+++++++.. .+|+||.+.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECC
Confidence 46999999 69999999999986 467766 57854 33221 111111000 012456678888743 389999998
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++. ...+.+. ..+..|.-+|..+|+. +...+++.+..++.|+.++-+|
T Consensus 77 ~p~-~~~~~~~---~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 77 TPE-GVLNHLK---FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred ChH-HHHHHHH---HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 764 4444443 3345666666555544 2334444444455556555444
No 191
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.78 E-value=0.00012 Score=73.54 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=49.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCCC--Ccc-ccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGDL--PLF-GFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~--~~~-~~~s~~e~~~~l~~advIi~~vp 82 (487)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++ ++|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~---~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK---GADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC---CCCEEEEccC
Confidence 58999999999999999999999 58999999988765322111100000 011 1234433 33 4999999997
Q ss_pred CC
Q 011394 83 AG 84 (487)
Q Consensus 83 ~~ 84 (487)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
No 192
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.78 E-value=7e-05 Score=74.01 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=76.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|+|+|.+|++++..|+..| .+|+++||+.++.+++.+...... .+....+..+.+. .+|+||.++|.+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCC
Confidence 357999999999999999999999 699999999999988876543210 0111112223333 4999999998763
Q ss_pred hHH-HHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 86 PVD-ETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 86 ~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.-. ....-....++++.+|+|..- .|..| .+.+..+++|...+
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~ 241 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTI 241 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeec
Confidence 210 000001134577899999976 44444 45555667776544
No 193
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.77 E-value=0.00027 Score=73.21 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=76.6
Q ss_pred EEEEcccHHHHHHHHHHHHCC-C-cEEEEeCChHHHHHHHHhhhhcCCCCccc----cCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKKEGDLPLFG----FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~----~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|.|+|.|.+|+.+++.|++.+ + +|++.||+.++++++.+..... ++.. ..+.+++.+-++++|+||.|+|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999998887641100 1111 23444444434459999999986
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
. .-..+++.. +..|...||.+. ......++.+..++.|+.++ +++...|..
T Consensus 78 ~-~~~~v~~~~---i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARAC---IEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHH---HHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHH---HHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5 445555444 346788999433 13344455566677787766 567666643
No 194
>PLN02494 adenosylhomocysteinase
Probab=97.76 E-value=0.00017 Score=75.14 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++|+|+|+|.+|..+|+.+...|.+|+++++++.+.......+ +. ..+.+++++. +|+||++......+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~-vv~leEal~~---ADVVI~tTGt~~vI 323 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQ-VLTLEDVVSE---ADIFVTTTGNKDII 323 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Ce-eccHHHHHhh---CCEEEECCCCccch
Confidence 4799999999999999999999999999999988755444333 22 2367787776 99999866543221
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+....+++|.++++.+..
T Consensus 324 ---~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 324 ---MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---HHHHHhcCCCCCEEEEcCCC
Confidence 24566778999999999884
No 195
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.76 E-value=0.00012 Score=76.56 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=54.2
Q ss_pred CcEEEEcccHHHHHHHH--HH----HHCCCcEEEEeCChHHHHHHHHhhhh----cC-CCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKK----EG-DLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~~~~~~~~s~~e~~~~l~~adv 76 (487)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++++........ .+ ..++..++++++++++ ||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998666 34 45578999999999887765432211 00 1145667788888776 999
Q ss_pred EEEecCCC
Q 011394 77 IIMLVKAG 84 (487)
Q Consensus 77 Ii~~vp~~ 84 (487)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999854
No 196
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.76 E-value=0.00013 Score=72.87 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=60.9
Q ss_pred EEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHH----HhhhhcC-CCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKKEG-DLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~----~~~~~~g-~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... +...... ..+++.+.+.++ ++ +||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~---dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA---GSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC---CCCEEEEecCC
Confidence 6899999999999999998887 9999999987643221 1111000 012333445444 33 49999998843
Q ss_pred Ch---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .++++++++.+.. +..++|..||..
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445666655 556766676644
No 197
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.76 E-value=0.00016 Score=74.33 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=66.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
..++.|||+|.||.-.|++|+++| ..|++.||+.+++.+++++... -+.+++++...+..+|+||.++..+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~-------~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA-------EAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC-------eeecHHHHHHhhhhCCEEEEecCCCc
Confidence 357999999999999999999999 5899999999999999887542 13345555554555999999986653
Q ss_pred hHH--HHHHHHhhcccCCCEEEecCC
Q 011394 86 PVD--ETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 86 ~v~--~vl~~l~~~l~~g~iiId~st 109 (487)
.+- ..+..... .++.-++||.+.
T Consensus 251 ~ii~~~~ve~a~~-~r~~~livDiav 275 (414)
T COG0373 251 PIITREMVERALK-IRKRLLIVDIAV 275 (414)
T ss_pred cccCHHHHHHHHh-cccCeEEEEecC
Confidence 321 11222221 112257888875
No 198
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.74 E-value=0.0001 Score=73.04 Aligned_cols=117 Identities=13% Similarity=0.111 Sum_probs=76.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.++|.|||+|-+|++++..|+..|. +|+++||+.++++.+.+..... ....+....+..+... ++|+||.|+|.+
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~G 203 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTG 203 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCC
Confidence 3579999999999999999999998 7999999999999887654211 0001111233333334 499999999865
Q ss_pred hhHH-H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 85 APVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 85 ~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
..-. . -+. ...+.++.+++|..-.. ..| .+.+..+++|...+
T Consensus 204 m~~~~~~~~~--~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~ 247 (284)
T PRK12549 204 MAKHPGLPLP--AELLRPGLWVADIVYFP-LET-ELLRAARALGCRTL 247 (284)
T ss_pred CCCCCCCCCC--HHHcCCCcEEEEeeeCC-CCC-HHHHHHHHCCCeEe
Confidence 2100 0 010 12367788999987644 333 45555667776554
No 199
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.73 E-value=0.00026 Score=70.93 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=64.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcC---CCCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEG---DLPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|..+|..|+..| ++|.++|+++++++.+........ ..+... ..+.++ ++ ++|+||++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~---~aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK---DADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC---CCCEEEEcc
Confidence 38999999999999999999999 689999999998776654321100 001111 233443 33 499999998
Q ss_pred CCCh---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+. .++++.+.+..+- +..+||..||.
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6531 1233335555544 45677777754
No 200
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.73 E-value=0.00017 Score=74.78 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=69.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+..+....+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998865544332 22 3367777765 99999987543
Q ss_pred HHHHH-HHhhcccCCCEEEecCCCCc
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~~~ 112 (487)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 3443 56677889999999987653
No 201
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.73 E-value=0.00022 Score=66.47 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+......+..+.. ..+.+++.+.+.++|+||.+.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCC
Confidence 358999995 999999999999999999999999999888776432100001111 23444333333459999999988
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..........++.+++|..-..
T Consensus 108 g~~---~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 108 GVE---LLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred Cce---echhhhcccCceeEEEEccCCC
Confidence 753 1111222344578999986554
No 202
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.72 E-value=0.00036 Score=69.09 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=76.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||+|-+|++++..|++.|. +|+++||++++.+++.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 79999999999999887542210 122222223333333459999999997754
Q ss_pred HHHH-HHHHh-----hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 VDET-IKTLS-----AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+.. +.... ..+.++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEE
Confidence 3321 11100 123467889998743 3333 34455566665544
No 203
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.71 E-value=0.00017 Score=63.70 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC-C--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG-D--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......... . .+........+.++ ++|+|+++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK---DADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT---TESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc---cccEEEEec
Confidence 69999999 9999999999999875 89999999887654433211100 0 01222223333333 399999987
Q ss_pred CCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
-.+ .. ++++.+.+.++- +..+++-.||.
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334555554 56677777664
No 204
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.69 E-value=0.00053 Score=58.02 Aligned_cols=112 Identities=14% Similarity=0.204 Sum_probs=68.2
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCChhH
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~v 87 (487)
|-|+|.|.+|..++..|.+.+.+|++.|+++++++.+.+.+... +....+-.+..+ .+++++.++++.+++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999988766321 112122222222 345699999999876332
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
..+...+....+...+++-..+. +..+.++..|+..+-
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHVI 114 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEEE
Confidence 23333333333334555544332 234445556765543
No 205
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.69 E-value=0.00037 Score=67.29 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=77.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcE-EEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPI-SVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V-~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+||||||+|.||..++..|.+.+ +++ .+++|++++.+++... ...++++++++.. ++|+|+.|-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCCH
Confidence 68999999999999999987642 443 4688998888777643 3578899997432 39999999875
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchh---HHHHHHHHHHcC-CeEEecCCCCChh
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYEN---TERREKAMAELG-LLYLGMGVSGGEE 139 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---~~~~~~~l~~~g-~~~i~~pvsgg~~ 139 (487)
. ++++....++ ..|.-++-.|.+-..+ -+++.+..++.| --|+..+-.||-.
T Consensus 73 ~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 73 Q-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 4 5666555544 4565555555443333 222333334444 3466666666644
No 206
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.69 E-value=0.00063 Score=68.96 Aligned_cols=110 Identities=13% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC--CcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG--FPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G--~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
..||||||+ .||...+..+.+.. +++. ++|+++++.++++++. ++..+++.+|+.++ .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 368999999 68999999998754 6655 6899999999988765 25578899999876 7888888754
Q ss_pred ----ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 ----GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
....+-+ ...+..|+-|+.-=-....+.+++.+..+++|..+.
T Consensus 73 ~~P~~~H~e~a----~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALA----RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHH----HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2333322 233456776665444445677777777777777665
No 207
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.69 E-value=0.00032 Score=61.97 Aligned_cols=122 Identities=24% Similarity=0.348 Sum_probs=75.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+... ....+-.-+....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999875443333322100 00000111222333333322 4555555543311
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.. ....+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445678999999887 4555567778888899999998776
No 208
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.65 E-value=0.00042 Score=69.83 Aligned_cols=99 Identities=15% Similarity=0.271 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHH---hhhh-cC-CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVE---RAKK-EG-DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~---~~~~-~g-~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.||..+|..++..| .+|.++|+++++.+...- .... .+ ..+++.+.+.+++ ++ +|+||++.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVita 81 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVITA 81 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEECC
Confidence 58999999999999999999998 699999999876432111 1100 00 0023334566633 44 99999998
Q ss_pred --CCC-------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 --KAG-------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 --p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.. ..++++.+.+.++. |..++|..||..
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 321 12445555666654 666777777654
No 209
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.62 E-value=0.00014 Score=62.50 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=59.5
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCC-c-EEEEeCChHHHHHHHHhhhhcCCC-CccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGF-P-ISVYNRTTSKVDETVERAKKEGDL-PLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~l~~~~~~~g~~-~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||+||| .|++|..+.+.|.++-+ + +.++.++.+.-..+.......... .+...+ +.+++ .+ +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 699999 99999999999999643 4 456677663333333321100000 122333 33444 44 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
. ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 5 445555444 56889999999875
No 210
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.59 E-value=0.0003 Score=72.36 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcccHHHHHHHHHHHHC--C-CcEEEEeCChHHHHHHHHhhhhcC-CC-CccccCCHHHHHhhcCCCcEEE
Q 011394 4 GKQLTRIGLAGLAVMGQNLALNIAEK--G-FPISVYNRTTSKVDETVERAKKEG-DL-PLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 4 ~~~~~kIgiIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~l~~~~~~~g-~~-~~~~~~s~~e~~~~l~~advIi 78 (487)
.+...+++|||+|.++....+.++.- . -+|.+|||++++.+++.++..... +. .+.+++++++++++ +|+|+
T Consensus 152 r~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVv 228 (379)
T PRK06199 152 RKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVT 228 (379)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEE
Confidence 34456899999999999999888763 2 389999999999998887654210 11 26678999999987 99999
Q ss_pred EecCCCh---hHHHHHHHHhhcccCCCEEEecCC
Q 011394 79 MLVKAGA---PVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 79 ~~vp~~~---~v~~vl~~l~~~l~~g~iiId~st 109 (487)
+|++... ....+++ ...+++|..|+..+.
T Consensus 229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 9997532 1113332 235678888765443
No 211
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.001 Score=62.10 Aligned_cols=191 Identities=12% Similarity=0.123 Sum_probs=113.1
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+.+||||.|..|.....+-...++... +..|++++++.+.+.. ...+.++.+.-+..+++|+.+|+.
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~----------~a~p~d~~~~ael~~~vfv~vpd~ 78 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETY----------VAPPLDVAKSAELLLLVFVDVPDA 78 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhcc----------CCCccchhhChhhhceEEecchHH
Confidence 34689999999999996555444444444 3368888887766533 223333333312267888888764
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC---eEEe-cCCCCChhhhcC--CCccc-cCCCHHHHH
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL---LYLG-MGVSGGEEGARH--GPSLM-PGGSFEAYK 157 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~---~~i~-~pvsgg~~~a~~--G~~i~-~gg~~~~~~ 157 (487)
.+..+... ..-.+|++|++||.-... .+.+.+...|. .+.. +-.+|.++.... ++.|. .-+|+--+.
T Consensus 79 -~~s~vaa~--~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~a 152 (289)
T COG5495 79 -LYSGVAAT--SLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYA 152 (289)
T ss_pred -HHHHHHHh--cccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccH
Confidence 23333221 234689999999976533 34444444442 2222 234555555442 33332 246777778
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 011394 158 YIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEE 221 (487)
Q Consensus 158 ~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~ 221 (487)
.++.+...||.+. +.+-+ +.--......|.-..-...++.|+..+-+..| .|.-+
T Consensus 153 i~q~la~emgg~~-------f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 153 IVQSLALEMGGEP-------FCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHHHhCCCc-------eeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 8889999998763 33332 43333444444444556788899999988888 77443
No 212
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.58 E-value=0.00067 Score=73.80 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=75.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
-+|-|+|+|.+|+.+++.|.+.|++|++.|.|+++++++.+.+... +....+.++..+ .++++|.++++++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~----i~GD~~~~~~L~~a~i~~a~~viv~~~~~~ 493 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRA----VLGNAANEEIMQLAHLDCARWLLLTIPNGY 493 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeE----EEcCCCCHHHHHhcCccccCEEEEEcCChH
Confidence 4688999999999999999999999999999999999887654211 222223333332 3457999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
....++..+... .+...+|-..+ .+ +..+.+++.|+.++-.|
T Consensus 494 ~~~~iv~~~~~~-~~~~~iiar~~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 494 EAGEIVASAREK-RPDIEIIARAH-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHH-CCCCeEEEEEC-CH----HHHHHHHHcCCCEEECh
Confidence 444444444443 33333333322 22 23344556687777655
No 213
>PRK04148 hypothetical protein; Provisional
Probab=97.58 E-value=0.00061 Score=59.15 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=72.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++|.+||+| -|..+|..|++.|++|++.|.++..++.+.+.+... .....++..-++-++ +|+|..+=|++ .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~---a~liysirpp~-e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKN---AKLIYSIRPPR-D 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhc---CCEEEEeCCCH-H
Confidence 3689999999 999999999999999999999999988776654310 001123334456666 99999988876 5
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCch
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYE 113 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~ 113 (487)
+..-+-.++......-+|...|+..|.
T Consensus 90 l~~~~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 90 LQPFILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence 555566677777666677777776543
No 214
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.58 E-value=0.00039 Score=72.01 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=68.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +. ..+.++.+.. +|+||.++....
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~-~~~~~e~v~~---aDVVI~atG~~~-- 269 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YE-VMTMEEAVKE---GDIFVTTTGNKD-- 269 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CE-EccHHHHHcC---CCEEEECCCCHH--
Confidence 4799999999999999999999999999999999877665543 22 2245666655 999999876532
Q ss_pred HHHHH-HHhhcccCCCEEEecCCC
Q 011394 88 DETIK-TLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~-~l~~~l~~g~iiId~st~ 110 (487)
++. .....+++|.++++.+..
T Consensus 270 --~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 270 --IITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 343 446778899999998854
No 215
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=97.56 E-value=0.00073 Score=55.41 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=63.7
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhHhhhccccccccCCCCchhHHhhhh
Q 011394 184 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVFTEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 263 (487)
Q Consensus 184 G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~ 263 (487)
-.++++|++.|++.+..+++++|...+|++.| +|..++.+.+.. ... +....+..+-.|++.++.+...
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~~--d~r-------i~~~~~~pg~g~GG~ClpkD~~- 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAANT--DPR-------IGPHYLRPGPGFGGSCLPKDPY- 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHHT--STT-------TTSSS-S-SSS--SSCHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHcc--Ccc-------cccccCCCCCCCCCcchhhhHH-
Confidence 36889999999999999999999999999999 999999988732 111 1122344443466666666542
Q ss_pred ccCCCCchHHHHHHHHHcCCCchhHHHH
Q 011394 264 KTGMKGTGKWTVQQAADLSVAAPTIASS 291 (487)
Q Consensus 264 ~~~~kgtg~~~~~~a~~~gv~~P~~~~a 291 (487)
..+..+.++|.+.+++.++
T Consensus 71 ---------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 71 ---------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp ---------HHHHHHHHTTSHHHHHHHH
T ss_pred ---------HHHHHHHHcCCCHHHHHHH
Confidence 4568899999998877655
No 216
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.54 E-value=0.0016 Score=64.68 Aligned_cols=122 Identities=12% Similarity=0.180 Sum_probs=87.4
Q ss_pred CCCCCCcEEEEcccHHHHHHHHHHHH---CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 3 EGKQLTRIGLAGLAVMGQNLALNIAE---KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 3 ~~~~~~kIgiIGlG~mG~~lA~~L~~---~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
+.+..-++||+|+|.|+.-+++.|.- .+|.|+ ++||+.+++.++++...-. +.+...|.+|++++ ..+|+|.
T Consensus 2 ~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVy 77 (351)
T KOG2741|consen 2 SDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVY 77 (351)
T ss_pred CCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEE
Confidence 34455689999999999999998863 367665 6799999999998865321 35788999999986 3469999
Q ss_pred EecCCChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEEec
Q 011394 79 MLVKAGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 79 ~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+..|.++..+-+...+ ..|+ ++++- -.......+++.+.++.+|+.|.+.
T Consensus 78 i~~~~~qH~evv~l~l----~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 78 ISTPNPQHYEVVMLAL----NKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred eCCCCccHHHHHHHHH----HcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9999987655444332 2333 44442 1223356777888888889877764
No 217
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.53 E-value=0.00097 Score=66.89 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=64.2
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEE
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g----~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......... ..++..+.+++++ ++ +|+||+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvi 77 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIV 77 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEE
Confidence 34699999999999999999998875 79999998876544332211110 0023434566653 43 999999
Q ss_pred ecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.-.+ .. ++++.+.+..+ .+..++|..||..
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP~ 123 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccChH
Confidence 76331 11 22333455555 4667777777643
No 218
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.53 E-value=0.00034 Score=63.61 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=56.5
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|||.|.| |..+|.+|.+.|.+|++.+|+.+. +.+.+.+ +|+||.+++.+.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~---------------------l~~~l~~---aDiVIsat~~~~- 99 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN---------------------LKEHTKQ---ADIVIVAVGKPG- 99 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh---------------------HHHHHhh---CCEEEEcCCCCc-
Confidence 58999999997 888999999999999999997432 2234444 999999998864
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.. +.++++.+|||.+...
T Consensus 100 ---ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 100 ---LVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred ---eecH--HHccCCeEEEEccCCC
Confidence 2211 2356789999998653
No 219
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.51 E-value=0.0012 Score=66.51 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC-C-CCcccc-CCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG-D-LPLFGF-RDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g-~-~~~~~~-~s~~e~~~~l~~advIi~~v 81 (487)
-+||+|||+|.+|..+|..|+..|. ++.++|++.++++.......... . .+.... .+.++ .+ +||+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~---~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CK---DADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hC---CCCEEEEec
Confidence 3699999999999999999999987 89999999887655443222100 0 012222 33333 34 499999986
Q ss_pred CCCh----h-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 82 KAGA----P-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 82 p~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
-.+. . ++++++.+..+- +..++|..||.
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~-~~~~vivvsNP 124 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASG-FDGIFLVASNP 124 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCc
Confidence 4321 1 223334444443 45667777753
No 220
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.48 E-value=0.0014 Score=72.08 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=78.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
.+|-|+|.|.+|+.+++.|.+.|+++++.|.|+++++.+++.+... +..-.+-.++.+ .++++|.+++++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKV----FYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeE----EEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999987654310 122223334443 4567999999998875
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
....++..+... .|. .+++-..+ .+....+.+.|+.++..+..
T Consensus 477 ~n~~i~~~ar~~-~p~~~iiaRa~d------~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 477 TSLQLVELVKEH-FPHLQIIARARD------VDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred HHHHHHHHHHHh-CCCCeEEEEECC------HHHHHHHHHCCCCEEehhhH
Confidence 544444444333 344 44443322 13345566778877755443
No 221
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.48 E-value=0.0013 Score=72.02 Aligned_cols=115 Identities=11% Similarity=0.168 Sum_probs=76.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
++|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.+... +....+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v----~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV----YYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE----EEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 5799999999999999999999999999999999999887654311 222223334433 3457999999999875
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
....++..+....+.-++++-+.+ ++..+.+.+.|+..+-.
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~------~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARG------RVEAHELLQAGVTQFSR 517 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCC------HHHHHHHHhCCCCEEEc
Confidence 554554444443333344443322 13345566677776643
No 222
>PRK11579 putative oxidoreductase; Provisional
Probab=97.48 E-value=0.0015 Score=66.57 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=71.0
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++||||||+|.+|.. .+..+... +.++. ++|+++++.. +... ....+++++++++. .+.|+|++|+|+
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~tp~ 74 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIPTPN 74 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEcCCc
Confidence 469999999999985 56666554 57765 6899987653 1111 24567899999864 347999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEE-ec-CCCCchhHHHHHHHHHHcCCeE
Q 011394 84 GAPVDETIKTLSAYMEKGDCII-DG-GNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~ 129 (487)
....+.++.. +..|+.|+ +- -.....+.+++.+..++.|..+
T Consensus 75 ~~H~~~~~~a----l~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 75 DTHFPLAKAA----LEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 7665544433 34566554 31 1123345566666666666554
No 223
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.46 E-value=0.00024 Score=73.92 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .....+++.+.+. .+|+||.|++.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~ 254 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLE 254 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCC
Confidence 4589999999999999999999996 7999999999999888754210 1222333344444 4999999998774
Q ss_pred h
Q 011394 86 P 86 (487)
Q Consensus 86 ~ 86 (487)
.
T Consensus 255 ~ 255 (414)
T PRK13940 255 Y 255 (414)
T ss_pred e
Confidence 3
No 224
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.45 E-value=0.00032 Score=59.78 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=71.5
Q ss_pred CcEEEEc----ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|+||| .+..|.-+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3699999 799999999999999999999987754321 35678888884244 9999999997
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
. .+.++++++... ..+.+|+..+ ...+++.+.+++.|+.+++.
T Consensus 66 ~-~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 D-KVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp H-HHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred H-HHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 5 678888877664 4566777766 34456667778889988854
No 225
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.42 E-value=0.00056 Score=66.98 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=65.3
Q ss_pred EEEEcc-cHHHHHHHHHHHHCC----CcEEEEeCChHHHHHHHHhhhhcC----CCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 10 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKKEG----DLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~l~~~~~~~g----~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
|+|||+ |.||..++..|+..| .+|.++|+++++++.......... ..+++.++++.+..++ ||+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999999 799999999877655433221100 0134555666666665 9999996
Q ss_pred cCCC---------------hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAG---------------APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.-.+ ..++++.+.+.... +..++|..||..
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 5221 12334445555544 677777777644
No 226
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00091 Score=65.83 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCC-hHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++||+|+|.+|+.+|.++..-|..|+.||.- +.+. ....+ +. ..+++|+... +|+|-+-+|-..+
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~--~~a~g-------vq-~vsl~Eil~~---ADFitlH~PLtP~ 213 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMAL--AEAFG-------VQ-LVSLEEILPK---ADFITLHVPLTPS 213 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHH--HHhcc-------ce-eeeHHHHHhh---cCEEEEccCCCcc
Confidence 47999999999999999999999999999854 3322 22222 23 4578888887 9999999998878
Q ss_pred HHHHH-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHH
Q 011394 87 VDETI-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAE 124 (487)
Q Consensus 87 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 124 (487)
.+.++ ++.+..+++|..||+++.+..-+...+.+.+..
T Consensus 214 T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 214 TEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 88888 456677899999999999887888777776654
No 227
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.36 E-value=0.0015 Score=65.20 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred EEEEcccHHHHHHHHHHHHCC--CcEEEEeCChHHHHHHHHhhhhcCC----CCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKKEGD----LPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~----~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+|||+|.+|.++|..|+..| .++.++|+++++++........... .++....+.+ .++ +||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~---~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAA---DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhC---CCCEEEEcCCC
Confidence 689999999999999999998 5899999999887665543221100 0122233433 333 49999999864
Q ss_pred Ch---------------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GA---------------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. .++++.+.+..+- +..++|..||.
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1233334555544 66677777754
No 228
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.35 E-value=0.0016 Score=68.76 Aligned_cols=97 Identities=12% Similarity=0.223 Sum_probs=63.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhh-cCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNS-IQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~-l~~advIi~~vp~~~ 85 (487)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++++.+.+..... -+.. ..+...+.+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 5899999999999999999999999999999999988876522100 0111 1223322222 45699999999876
Q ss_pred hHHHHHHHHhhcc-cCCCEEEecC
Q 011394 86 PVDETIKTLSAYM-EKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l-~~g~iiId~s 108 (487)
.....+......+ +...+|+...
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3443333333333 4445555543
No 229
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.34 E-value=0.00068 Score=69.00 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISV-YNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|+||+|||+ |.+|..+++.|.++ ++++.. +++. +..+.+.+..............+.++.. .+++|+||+|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEI--LAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHH--hcCCCEEEECCCc
Confidence 579999996 99999999999987 567654 5543 3222222211100000001223333321 2349999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
+. ..++...+. ..|..|||.|+...
T Consensus 79 ~~-~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 GV-SMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred HH-HHHHHHHHH---hCCCEEEECCcccC
Confidence 74 444444443 46899999998763
No 230
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.28 E-value=0.0023 Score=61.16 Aligned_cols=116 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEE-EEeC----------ChHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~a 74 (487)
.++|+|.|+|++|+.+++.|.+.|.+|+ +.|. +.+.+.+..+.......+ ... .-+.+++... +|
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~-~~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAE-RITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCce-ecCCccceee--cc
Confidence 4689999999999999999999999998 6677 666665554432210000 001 1133444332 48
Q ss_pred cEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 75 RVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 75 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
|+++-|.+...-..+.+..+ +=++|+..+|... +.+..+.|.++|+.|+.-
T Consensus 108 Dvlip~a~~~~i~~~~~~~l-----~a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRI-----KAKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhc-----eeeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 99999987764433443333 2467888777753 366778889999998854
No 231
>PRK15076 alpha-galactosidase; Provisional
Probab=97.25 E-value=0.0011 Score=69.38 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=51.3
Q ss_pred CCcEEEEcccHHHHHHHH--HHH----HCCCcEEEEeCChHHHHHHH---Hhhhh-cC-CCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETV---ERAKK-EG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|+||+|||.|.||...+. .++ -.+.+|.++|+++++++... +.... .+ ..++..+++..+.++. +|
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---AD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---AD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CC
Confidence 479999999999977665 554 23569999999998866322 11111 00 1145667777777776 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||+++-.+
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999998665
No 232
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.25 E-value=0.00043 Score=63.04 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--------------------c---CC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--------------------F---RD 63 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--------------------~---~s 63 (487)
..+|.|+|.|+.|..-+..+...|++|+++|.++++.+++....... +.. . ..
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYF----IEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEE----SEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCce----EEEcccccccccccchhhhhHHHHHhHHH
Confidence 36899999999999999999999999999999999887766543321 111 1 12
Q ss_pred HHHHHhhcCCCcEEEEecC-CChhHHHHH-HHHhhcccCCCEEEecCC
Q 011394 64 PESFVNSIQKPRVIIMLVK-AGAPVDETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 64 ~~e~~~~l~~advIi~~vp-~~~~v~~vl-~~l~~~l~~g~iiId~st 109 (487)
+.+.++. +|+||.++. .+.....++ ++.+..+.++.+|+|.|.
T Consensus 96 f~~~i~~---~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAP---ADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH----SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhh---CcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence 3344444 899997542 222222233 556667889999999974
No 233
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.23 E-value=0.001 Score=67.80 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=60.6
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHhhhh-cCCCCcccc-CCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKK-EGDLPLFGF-RDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~-~g~~~~~~~-~s~~e~~~~l~~advIi~~vp 82 (487)
+||+|||+ |.+|..+.+.|.++ ++++. +++++...-+.+.+.... .+....... .+.+++.++ +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 58999997 99999999999987 56777 556554322222221110 000001111 145555544 999999999
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ ...++...+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 87 3444444443 4689999999865
No 234
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.23 E-value=0.0045 Score=65.38 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cc-cCCHHHHH-hhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FG-FRDPESFV-NSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~-~~s~~e~~-~~l~~advIi~~vp~ 83 (487)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+++.+.+.. ..+ .. ..+.+.+. ..++++|.|+++.++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 5789999999999999999999999999999999999888765321 011 11 12333331 234569999988886
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+ ...-.+..++..+....+++-+.+.. . .+.+...|+.++-.|
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~--~----~~~~~~~g~~~vi~p 350 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPA--Y----VDLVEGLGIDIAISP 350 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcc--h----HHHHHhcCCCEEECH
Confidence 5 33333333344455556666555432 2 233455676665443
No 235
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.22 E-value=0.0029 Score=64.42 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC----------CCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK----------GFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDP 64 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~----------G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~~~~~~s~ 64 (487)
..+|+|+|+|.||+.+++.|.+. +.+|. ++|++ .+++..+.+.......+ ....+.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 35899999999999999999865 34544 56753 33333333321100000 01123477
Q ss_pred HHHHhhcCCCcEEEEecCCChhH-HHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 65 ESFVNSIQKPRVIIMLVKAGAPV-DETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 65 ~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
+++++. ..+|+|+.|+|+.... +...+-+...+..|..||..+..... ...++.+..++.|..|. .+.+.+|
T Consensus 82 ~ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 82 LEVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 888754 2489999999874321 22223334556788888765432211 23345555566677664 4555544
No 236
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.20 E-value=0.0034 Score=58.87 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=30.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 39 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 39 (487)
..+|+|||+|.||+.+|.+|++.|+ +|+++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999998
No 237
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.19 E-value=0.0013 Score=65.94 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=46.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCCh--HHHHHHHHhh----hhcC-CCCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTT--SKVDETVERA----KKEG-DLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~~l~~~~----~~~g-~~~~~~~~s~~e~~~~l~~advI 77 (487)
|||+|||+ |.+|..++..|+..|+ +|.++|+++ ++++...... ...+ ..++....+.++ ++. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 68999997 9999999999999987 499999965 4432221110 0000 002333344444 443 9999
Q ss_pred EEecC
Q 011394 78 IMLVK 82 (487)
Q Consensus 78 i~~vp 82 (487)
|+++.
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 99985
No 238
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.18 E-value=0.0037 Score=61.96 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=64.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccc-cCCHHHHHhh--cCCCcEEEEe
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFG-FRDPESFVNS--IQKPRVIIML 80 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~~-~~s~~e~~~~--l~~advIi~~ 80 (487)
+.||||||+|.+|..++..+.+. +.++. ++|+++++.. +..++. ++.. +++.+++++. +++.|+||.+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf~A 77 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVFDA 77 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEEEC
Confidence 46899999999999988888764 45665 6799887432 223222 2333 4678888863 3568999999
Q ss_pred cCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.... ...... .+..|..+||.+...
T Consensus 78 T~a~~H-~e~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 78 TSAGAH-VRHAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred CCHHHH-HHHHHH---HHHcCCeEEECCccc
Confidence 987633 333222 345789999988654
No 239
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0016 Score=63.54 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCc-cccCCHHHHHhhcCCCcEEEEec--CC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPL-FGFRDPESFVNSIQKPRVIIMLV--KA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~-~~~~s~~e~~~~l~~advIi~~v--p~ 83 (487)
..||.|||-|.+|..-|+...--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.++++|++|-+| |.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 3589999999999999999998999999999999998877654321 33 23455555555555699999876 33
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.++-+-+.+++...+.||.+|||..
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 3333445577788899999999974
No 240
>PRK10206 putative oxidoreductase; Provisional
Probab=97.17 E-value=0.0045 Score=63.12 Aligned_cols=113 Identities=9% Similarity=0.155 Sum_probs=71.2
Q ss_pred CCcEEEEcccHHHHH-HHHHHHH--CCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAE--KGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~--~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
|.||||||+|.++.. .+..+.. .+++|. ++|+++++. ++.++.. .+..+++.+++.+. .+.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 458999999998753 3454533 356665 789998654 4443321 24567899999874 34899999999
Q ss_pred CChhHHHHHHHHhhcccCCC-EEEec-CCCCchhHHHHHHHHHHcCCeEE
Q 011394 83 AGAPVDETIKTLSAYMEKGD-CIIDG-GNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+....+-++.. +..|+ ++++- -.....+.+++.+..++.|..+.
T Consensus 74 ~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~ 119 (344)
T PRK10206 74 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVT 119 (344)
T ss_pred chHHHHHHHHH----HHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 88665554443 33454 45441 11223566667776677776544
No 241
>PLN02602 lactate dehydrogenase
Probab=97.17 E-value=0.0041 Score=63.29 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=61.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc----CCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE----GDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~----g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|..+|..|+..+. ++.++|+++++++......... ....+....+.++ ++ +||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~---daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA---GSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC---CCCEEEECC
Confidence 599999999999999999998876 7999999987765443221110 0001222234554 33 399999985
Q ss_pred CCC----hh-----------HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-.+ .. ++++.+.+..+ .+..++|..||..
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNPv 157 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNPV 157 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCch
Confidence 332 11 22233444444 4566777777643
No 242
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.16 E-value=0.0018 Score=66.99 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHH-HHHHHHCCCcEEEEeCChHHHHHHHHhhhh----cC-C-C-----Ccccc--CCHHHHHhhcCC
Q 011394 8 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKK----EG-D-L-----PLFGF--RDPESFVNSIQK 73 (487)
Q Consensus 8 ~kIgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~l~~~~~~----~g-~-~-----~~~~~--~s~~e~~~~l~~ 73 (487)
|||.++|+|+||++. +..|.+.|++|++.|++++.++.+.+++.. .+ . . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 689999999999855 888899999999999999999999877531 01 1 0 11111 123445444445
Q ss_pred CcEEEEecCCChhHHHHHHHHhhccc--------CCCEEEecCCCC
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYME--------KGDCIIDGGNEW 111 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~ 111 (487)
+|+|.++++.. ..+.+...+.+.|. ++-+|+.|-|..
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~ 125 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI 125 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh
Confidence 89999888764 45555555544432 333788888775
No 243
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.16 E-value=0.0042 Score=53.28 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=73.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH--HHhhCCCCCCCcCC
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKK--AYDRNADLANLLVD 402 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~--~~~~~~~~~~ll~~ 402 (487)
|+++-.|.++|-+.++.+..++|++.+-++. ++|.++++++-+.| .-.|+.++.... ++..+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4677899999999999999999999998763 49999999999877 457887776543 3332221
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
+.|. ++-....++-++..|-+.|+|+|..+.+..+|..
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~ 104 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQA 104 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 2221 2233456688899999999999999999887653
No 244
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.14 E-value=0.0015 Score=64.31 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=57.7
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|. +|.++|..|.+.|.+|+++++... ++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 4799999988 999999999999999999987431 34445555 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.. ..+++|.+|||.+..
T Consensus 215 i~~------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNT 232 (286)
T ss_pred cCH------HHcCCCcEEEEcCCC
Confidence 222 346789999999875
No 245
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.13 E-value=0.0041 Score=59.00 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh----------HHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKKEGDLPLFG--FRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~ 73 (487)
-++|+|.|+|++|+.+|+.|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + +
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 3589999999999999999999988 556778887 6655544433211 0111 112234433 2 5
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCChhhhcCCCccccCCCH
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSF 153 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~~~a~~G~~i~~gg~~ 153 (487)
||+++.|.+.+.-...... .+ +=++|+...|... + .+..+.|.++|+.|+.--+.. .|..+.
T Consensus 98 ~DVlipaA~~~~i~~~~a~----~l-~a~~V~e~AN~p~-t-~~a~~~L~~~Gi~v~Pd~~~N------aGGvi~----- 159 (217)
T cd05211 98 VDIFAPCALGNVIDLENAK----KL-KAKVVAEGANNPT-T-DEALRILHERGIVVAPDIVAN------AGGVIV----- 159 (217)
T ss_pred ccEEeeccccCccChhhHh----hc-CccEEEeCCCCCC-C-HHHHHHHHHCCcEEEChHHhc------CCCeEe-----
Confidence 9999999887632222222 22 3467777777643 2 366778889998887543221 111111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011394 154 EAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLTNEELQNVF 226 (487)
Q Consensus 154 ~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~g~i~~~~i~~v~ 226 (487)
..++.+ +... ..++- -.-+.+.+...+...+.+.+..+++.+ +++.+...++
T Consensus 160 s~~E~~----q~~~--------~~~w~--------~~~v~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 211 (217)
T cd05211 160 SYFEWV----QNLQ--------RLSWD--------AEEVRSKLEQVMTDIHNGVFAISERDG-VTMRAAANIL 211 (217)
T ss_pred EHHHhc----CCcc--------ccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 111111 1000 01111 112233444556667788888888888 8887766553
No 246
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.12 E-value=0.0036 Score=59.81 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=68.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc---EEEEeCC----hHHH-------HHHHHhhhhcCCCCccccCCHHHHHhhcCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKKEGDLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~ 73 (487)
++|-|+|+|.+|..+|..|.+.|.. |+++||+ .++. .++.+.... .....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4543 223322110 0111256566665
Q ss_pred CcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCe
Q 011394 74 PRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLL 128 (487)
Q Consensus 74 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 128 (487)
+|+||-+.|.+......+ ..+.++.+|++.+|..+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l----~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMI----KKMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHH----HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 999999998553223333 33457788999885443 2344444455654
No 247
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.11 E-value=0.0026 Score=62.66 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHH-HHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
++|||||+|.||..++..+.+. +.++. ++|+++++.. ++.++. ++. ..++.+++++. .+.|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 55665 6799887643 233322 232 34578888764 347999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+.+.. ...+..|..|||.+...
T Consensus 75 ~~H~e~a----~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARHA----RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHHH----HHHHHcCCEEEECCccc
Confidence 7543332 23356789999887654
No 248
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.08 E-value=0.002 Score=68.35 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc------------cCCHH-------HH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG------------FRDPE-------SF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~------------~~s~~-------e~ 67 (487)
..|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...+... ..+.. ..+.+ .+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHHHHH
Confidence 35899999999999999999999999999999999877665533210 00000 00100 02
Q ss_pred HhhcCCCcEEEEec-----CCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 68 VNSIQKPRVIIMLV-----KAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 68 ~~~l~~advIi~~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+.++++|+||.++ |.+. -+.++....+++|.+|||.+..
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~---Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPK---LITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCe---eehHHHHhhCCCCCEEEEeeeC
Confidence 23345599999888 3331 1234556778889999998763
No 249
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.07 E-value=0.0017 Score=63.84 Aligned_cols=74 Identities=15% Similarity=0.298 Sum_probs=59.0
Q ss_pred CcEEEEcccHH-HHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|.. |.++|..|.+.|.+|++++.. +.++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 47999998888 999999999999999997642 2345566666 9999999997653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..+++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 322 5688999999998754
No 250
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.06 E-value=0.016 Score=55.74 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=98.3
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 57 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+++++++..|+++. +|++|+-+|-+...-.+++.+.+++++|.+|.++.|++|..--++.+.+..+.+...++.. +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56777888888887 9999999999976678889999999999999999999877655555555444444433321 1
Q ss_pred ChhhhcCCC-ccccC-CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 011394 137 GEEGARHGP-SLMPG-GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 214 (487)
Q Consensus 137 g~~~a~~G~-~i~~g-g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~~~~ 214 (487)
+.++.. |. .+.-| .+++..+++-+|.++.+... +.+-..=.+...-|. ..+.+...+.+.+-+....+.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~a-------y~~PA~LvspV~DMg-S~VTAv~~aGiL~Y~~~~t~I 272 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGKA-------FKMPANLLGPVCDMC-SAVTAIVYAGLLAYRDAVTKI 272 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCCe-------eecchhhccchhhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 223333 44 34333 38899999999999988752 333222223333333 233444556666666666665
Q ss_pred CCCCHH
Q 011394 215 GKLTNE 220 (487)
Q Consensus 215 g~i~~~ 220 (487)
-|.+.+
T Consensus 273 lgAP~~ 278 (340)
T TIGR01723 273 LGAPAD 278 (340)
T ss_pred hcCcHH
Confidence 535443
No 251
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.05 E-value=0.0038 Score=63.45 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEEE-EeCChHHHHHHHHhhhhc------------CCCCccccCCHHHHHhhcC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISV-YNRTTSKVDETVERAKKE------------GDLPLFGFRDPESFVNSIQ 72 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v-~dr~~~~~~~l~~~~~~~------------g~~~~~~~~s~~e~~~~l~ 72 (487)
|+||||+|+|.||+.+++.+.+. +++|.+ +|++++....+.+..+.. ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 56999999999999999988864 567664 577766555544421100 00013334455555544
Q ss_pred CCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 73 KPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 73 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||.|.|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 777777776542 222222 233456666666553
No 252
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.04 E-value=0.0035 Score=50.23 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=46.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++++|+|.|.+|.+++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 35899999999999999999998 568888887 57777776654
Q ss_pred hHHHHHHHHhhcccCCCEEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 3332 1234456778888763
No 253
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.03 E-value=0.0028 Score=66.43 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------C--Cc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~ad 75 (487)
+.+|||||+|.||..++..|.++ | .+ +.++|+++++...+. .. ....++++++++++ .+.|
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-~~------~~~~~~d~~~ll~d-~~iD 74 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-LP------GILLTTDPEELVND-PDID 74 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-Cc------ccceeCCHHHHhhC-CCCC
Confidence 36899999999999999888654 3 34 346799977643211 00 23467789998864 2479
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC-chhHHHHHHHHHHcCCeEE-ecCCCCC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW-YENTERREKAMAELGLLYL-GMGVSGG 137 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i-~~pvsgg 137 (487)
+|+.+++......+. +...+..|+.||...... .....++.+..+++|+.|. ++-|.||
T Consensus 75 vVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 75 IVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred EEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 999998754322332 334566888887543210 1123344455556677543 5555544
No 254
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.02 E-value=0.0028 Score=57.41 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=52.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|||+||| .|..|..|+.-..+.||+|+.+-||++|+..+...... .. -.-+++.+++.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~----q~-Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTIL----QK-DIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceee----cc-cccChhhhHhhhcCCceEEEeccCC
Confidence 7999999 79999999999999999999999999998654211000 00 1224444455555689999988544
No 255
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.0047 Score=64.43 Aligned_cols=131 Identities=17% Similarity=0.092 Sum_probs=79.1
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhh-hhcCCCCcccc--CCHHHHHhhcCCCcEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KKEGDLPLFGF--RDPESFVNSIQKPRVI 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~-~~~g~~~~~~~--~s~~e~~~~l~~advI 77 (487)
|+..-.++||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ....... ... ++... ....+... .+|+|
T Consensus 1 ~~~~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~---~~d~v 73 (448)
T COG0771 1 MMEDFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLA---EFDLV 73 (448)
T ss_pred CcccccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhccc---cCCEE
Confidence 344444789999999999999999999999999999976655 1111110 000 11111 11112333 38999
Q ss_pred EEe--cCCCh-hHHHHHH---------HHhhcc--cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 78 IML--VKAGA-PVDETIK---------TLSAYM--EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 78 i~~--vp~~~-~v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
+.+ +|... .++.... ++.... ...-+-|..||+...+|.-+...+++.|....-++-.|.+
T Consensus 74 V~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 74 VKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 886 33332 2332221 222222 2235667778888777777778888888877666666554
No 256
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.90 E-value=0.0041 Score=62.25 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=58.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|||+|||+ |.+|..+|..|+..|. ++.++|++ +++...-..... ....+..+....+..+.++++|+||++.-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 58999999 9999999999998884 89999998 322111110000 001233220111122233449999998743
Q ss_pred C----h-----------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 G----A-----------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+ . .++++.+.+.++ .+..++|..||..
T Consensus 79 ~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 79 PRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 2 1 122333455555 4677888888753
No 257
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.90 E-value=0.0052 Score=56.14 Aligned_cols=68 Identities=19% Similarity=0.350 Sum_probs=51.8
Q ss_pred EEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecCCC
Q 011394 10 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 10 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+. .+.. ..+++.+.+.++++|.||.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~-----~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGV-----EIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTE-----EEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--cccc-----ccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 678994 999999999999999999999999998876 1111 1111 245556666666799999999754
No 258
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.89 E-value=0.0051 Score=60.55 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=78.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++.|+|+|-++++++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 579999999999999999999995 89999999999999987654321 0001112222111 0128999999987743
Q ss_pred HHH---HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDE---TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
-.. .+. ...++++.++.|+--.. ..| .+.+..+++|...++
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-plL~~A~~~G~~~id 247 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNP-LET-PLLREARAQGAKTID 247 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCC-CCC-HHHHHHHHcCCeEEC
Confidence 321 122 34577899999986543 333 355666777766553
No 259
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.87 E-value=0.0036 Score=62.43 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
+|+||+||| .|+-|.-|.+.|+.+.+ +|..+..+..+-+.+.+...+. +...... .-+++++. ...||+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~--~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIE--LDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhh--cccCCEEEEec
Confidence 367999998 89999999999998854 7666665543333333322210 0000111 11333331 23489999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++. -.+.+..+ +.+|..|||+|+-.
T Consensus 79 Phg~-s~~~v~~l---~~~g~~VIDLSadf 104 (349)
T COG0002 79 PHGV-SAELVPEL---LEAGCKVIDLSADF 104 (349)
T ss_pred Cchh-HHHHHHHH---HhCCCeEEECCccc
Confidence 9984 33333333 34677799999875
No 260
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.84 E-value=0.0077 Score=60.71 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=70.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHC------C--CcE-EEEeCChHH-------HHHHHHhhhhcCCCCccccC--CHHHHHh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK------G--FPI-SVYNRTTSK-------VDETVERAKKEGDLPLFGFR--DPESFVN 69 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~------G--~~V-~v~dr~~~~-------~~~l~~~~~~~g~~~~~~~~--s~~e~~~ 69 (487)
|+|+|||+|++|+.+++.|.++ | .+| .++|++... ++++.+.... +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 3 443 355766432 2222221110 000001112 5666654
Q ss_pred hcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEE-ecCCCCCh
Q 011394 70 SIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYL-GMGVSGGE 138 (487)
Q Consensus 70 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~i-~~pvsgg~ 138 (487)
.++|++|-|.|....-.....-+.+.+..|..||-.+...... -.++.+..+++|.++. ++.|.||.
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2589999999753221223444456677888888766432221 1233344455666654 66666553
No 261
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.84 E-value=0.039 Score=53.11 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=98.0
Q ss_pred CccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec---C
Q 011394 57 PLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM---G 133 (487)
Q Consensus 57 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~---p 133 (487)
+++++++..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|++|..--+..+.+..+.+....+ .
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777888888887 99999999999767788899999999999999999998776666555555444433332 3
Q ss_pred CCCChhhhcCCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCeEEEeCCchhhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011394 134 VSGGEEGARHGPSLMPG--GSFEAYKYIEDILLKVAAQVPDSGPCVTYVSKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 211 (487)
Q Consensus 134 vsgg~~~a~~G~~i~~g--g~~~~~~~v~~ll~~ig~~~~~~~~~~~~~G~~G~g~~~K~v~N~~~~~~~~~~~Ea~~l~ 211 (487)
|-|.+ |.++..- .+++..+++-+|.++.+... +.+-..=.+...-|. ..+.+...+.+.+-+...
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~a-------y~~PA~lvspV~DMg-S~VTAv~~aGiL~Y~~~~ 271 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNA-------FKMPANLIGPVCDMC-SAVTAIVYAGILAYRDAV 271 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCe-------eecchhhcchhhhHH-HHHHHHHHHHHHHHHHHH
Confidence 32222 5533332 38899999999999988752 433222333333333 234445566666666666
Q ss_pred HHhCCCCHH
Q 011394 212 KSVGKLTNE 220 (487)
Q Consensus 212 ~~~g~i~~~ 220 (487)
.+.-|.+.+
T Consensus 272 tqIlgAP~~ 280 (342)
T PRK00961 272 TQILGAPAD 280 (342)
T ss_pred HHHhcCcHH
Confidence 665535443
No 262
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.01 Score=62.89 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-----HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-----KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-----~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.+. .+.......+.+.. +|+||.+.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi-----~~~~~~~~~~~~~~---~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGV-----KLVLGENYLDKLDG---FDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCC-----EEEeCCCChHHhcc---CCEEEECC
Confidence 46899999999999999999999999999998753 1223333221 11111222333343 89998873
Q ss_pred --CCC-hhHHHHHH---------HHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 --KAG-APVDETIK---------TLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 --p~~-~~v~~vl~---------~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.. ..+....+ +++ .......|-|-.|++...++.-+...+...|....
T Consensus 86 gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~ 147 (458)
T PRK01710 86 SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW 147 (458)
T ss_pred CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEE
Confidence 211 12222111 111 11122235555666665555555667776665443
No 263
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.81 E-value=0.0043 Score=60.89 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=59.0
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-|. +|.++|..|.+.|.+|+++++.. .++++.+++ +|+||.++..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 4799999888 99999999999999999997542 245566666 9999999966543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+.. ..+++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5678999999998654
No 264
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.80 E-value=0.015 Score=59.02 Aligned_cols=124 Identities=14% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK---EGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~---~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|..+|.+|++.|+ +++++|++.-....+.++.-. ..+.+..-+....+.++.+ .+++-+.++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 899999885322222211000 0000000011112222221 1566666655
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.... ...++++ +..-++|||++.. +.....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVT-VEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCC-HHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 4321 2223333 4456899999854 3433344566677788888776554
No 265
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.80 E-value=0.019 Score=53.85 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=70.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKER 99 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhc
Confidence 3589999999999999999999997 899999885333333322100 0000000111122222221 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .. .+...+..-++||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 100 i~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VT-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CC-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 11 122334566899998754 3444445666778888888876544
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.78 E-value=0.008 Score=64.02 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 51 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~ 51 (487)
-.||.|||+|.+|...+..+...|.+|+++|+++++.+...+.+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 358999999999999999999999999999999999887766543
No 267
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.78 E-value=0.0096 Score=59.16 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCCh---HHHHHHHHhhhhcC-CCCccc--cCCHHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKKEG-DLPLFG--FRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~l~~~~~~~g-~~~~~~--~~s~~e~~~~l~~advIi~~ 80 (487)
+++-|+|.|-+|++++..|++.|.. |+++||++ ++.+++.+.....+ ...+.. .++.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 67766655432110 000111 11222222223348999999
Q ss_pred cCCChh--HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|.+.. .+. .+.. ...+.++.+|+|.--.. ..| .+.+..+++|...+
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 256 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNP-KKT-KLLEDAEAAGCKTV 256 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCC-CCC-HHHHHHHHCCCeee
Confidence 986521 010 0100 13467788999987543 333 34555566665443
No 268
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.76 E-value=0.025 Score=59.79 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +.+++..++.... +..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCC
Confidence 3579999999999999999999999999999985 3343322221111 0012222233344444 899998764
No 269
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.73 E-value=0.0051 Score=55.33 Aligned_cols=75 Identities=16% Similarity=0.415 Sum_probs=51.8
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ .+|.+++..|.++|..|++++... .++++.+++ +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 479999977 599999999999999999998653 244555565 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCc
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWY 112 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~ 112 (487)
++ ...+++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999987654
No 270
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.73 E-value=0.015 Score=60.88 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA-- 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 85 (487)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++.......... ......+.+.++ +|+||.+.+.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~dlvV~s~gi~~~~ 73 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHE-------RYLENAEEFPEQ---VDLVVRSPGIKKEH 73 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhh-------hhcCCcHHHhcC---CCEEEECCCCCCCc
Confidence 47999999999999999999999999999988764432110000 011233333344 888888765432
Q ss_pred -hHHHHH--------H-HH-hhc--c-cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 86 -PVDETI--------K-TL-SAY--M-EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 86 -~v~~vl--------~-~l-~~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+.... + .+ ... . ....|-|-.|++...++.-+...+...|....
T Consensus 74 ~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~ 132 (418)
T PRK00683 74 PWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAF 132 (418)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeE
Confidence 122221 1 11 111 1 22246666777776666666777777664433
No 271
>PLN00106 malate dehydrogenase
Probab=96.72 E-value=0.0061 Score=61.36 Aligned_cols=75 Identities=12% Similarity=0.242 Sum_probs=46.4
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHH--HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
...||+|||+ |.+|..+|..|+..+. ++.++|+++... -++..-.. ...+....+..+..+.++++|+||++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEEEEe
Confidence 3468999999 9999999999997765 899999987211 12221111 00122212232233334459999998
Q ss_pred cCC
Q 011394 81 VKA 83 (487)
Q Consensus 81 vp~ 83 (487)
.-.
T Consensus 94 AG~ 96 (323)
T PLN00106 94 AGV 96 (323)
T ss_pred CCC
Confidence 643
No 272
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.71 E-value=0.0092 Score=59.02 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=73.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCH---HHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDP---ESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~---~e~~~~l~~advIi~~vp~ 83 (487)
+++.|+|+|-.|++++..|++.|. +|+++||++++.+++.+..............+. .+.... +|+||-++|-
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~---~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhh---cCEEEEcCCC
Confidence 579999999999999999999997 799999999999998765321000000111222 223333 8999999986
Q ss_pred ChhHH-H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 84 GAPVD-E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 84 ~~~v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+..-. . .+. ...+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 205 Gm~~~~~~~~~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 249 (283)
T PRK14027 205 GMPAHPGTAFD--VSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETL 249 (283)
T ss_pred CCCCCCCCCCC--HHHcCCCcEEEEcccCC-CCC-HHHHHHHHCCCEEE
Confidence 52100 0 011 12356778999986543 333 34555566776554
No 273
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.69 E-value=0.0068 Score=60.95 Aligned_cols=75 Identities=13% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC--CcEEEEeCChHHHH--HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML 80 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~ 80 (487)
+|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++.+... ...+...+++.+..+.++++|+||++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCc---CceEEEecCCCchHHHhCCCCEEEEC
Confidence 4779999999 999999999999655 58999999432221 2221111 01233233322212233449999998
Q ss_pred cCC
Q 011394 81 VKA 83 (487)
Q Consensus 81 vp~ 83 (487)
.-.
T Consensus 84 aG~ 86 (321)
T PTZ00325 84 AGV 86 (321)
T ss_pred CCC
Confidence 744
No 274
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.69 E-value=0.015 Score=58.13 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=73.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--------CCcEE---EEeCChHHHH--HHHHhhhhcCCCCccccCCH-----HHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--------GFPIS---VYNRTTSKVD--ETVERAKKEGDLPLFGFRDP-----ESFV 68 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--------G~~V~---v~dr~~~~~~--~l~~~~~~~g~~~~~~~~s~-----~e~~ 68 (487)
.++|+|+|+|.+|+.+++.|.++ |.++. +.||+..+.. .+... ....++. .+++
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA--------EVWTTDGALSLGDEVL 74 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch--------hhheecccccccHhhh
Confidence 46899999999999999999875 33433 4467665543 11110 1122333 3444
Q ss_pred hhcCCCcEEEEecCC-ChhHHHHHHHHhhcccCCCEEEecCCCCchhHH---HHHHHHHHcCCeE-EecCCCCChh
Q 011394 69 NSIQKPRVIIMLVKA-GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTE---RREKAMAELGLLY-LGMGVSGGEE 139 (487)
Q Consensus 69 ~~l~~advIi~~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~---~~~~~l~~~g~~~-i~~pvsgg~~ 139 (487)
.. ...|+|+-+++. ....+. ++.+...+..|..||-..... .+. ++.+..++.|..+ .++-|.||.+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~--lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL--LALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH--hHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 42 347889988876 444555 667777888999998554332 222 2444445556544 4777777643
No 275
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.69 E-value=0.019 Score=53.97 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=51.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++|-|||.|.||...+..|.+.|++|++++++.. .+.++...+ .+.... ...+ ..+.++|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987743 334444332 122211 1111 1133489998888776
Q ss_pred hHHHHHHHH
Q 011394 86 PVDETIKTL 94 (487)
Q Consensus 86 ~v~~vl~~l 94 (487)
.+...+...
T Consensus 82 elN~~i~~~ 90 (202)
T PRK06718 82 RVNEQVKED 90 (202)
T ss_pred HHHHHHHHH
Confidence 555555433
No 276
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.68 E-value=0.0074 Score=55.25 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=64.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
||.|||+|.+|..++.+|++.|. +++++|.+.-....+.++.......+-.-+....+.++++ .+++=+.+.+..-.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 68999999999999999999998 5999998862222222111000000000011112222221 14444444433211
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecCCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMGVSG 136 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~pvsg 136 (487)
.. .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+.+.+
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~~ 124 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGMA 124 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehhh
Confidence 11 12233456689999944 334333355555555 88888664443
No 277
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.66 E-value=0.0057 Score=61.32 Aligned_cols=96 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC--cEEEEeCChHHH--HHHHHhhhhcCCCCccccC---CHHHHHhhcCCCcEEEEe
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGDLPLFGFR---DPESFVNSIQKPRVIIML 80 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~~~~~~~~---s~~e~~~~l~~advIi~~ 80 (487)
||+|||+ |.+|.++|..|+..++ ++.++|+++... -++.. ... ..++..+. ++.+.. +++|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~---~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENAL---KGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHc---CCCCEEEEe
Confidence 7999999 9999999999998886 899999987221 11111 100 00233211 123333 449999998
Q ss_pred cCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+. .++++.+.+..+ .++.++|..||..
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 74321 122333455555 4677888888754
No 278
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.65 E-value=0.02 Score=57.35 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=46.4
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCC----CCccc-cCCHHHHHhhcCCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGD----LPLFG-FRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~----~~~~~-~~s~~e~~~~l~~advIi~~v 81 (487)
||+|||+|.+|.++|..|+..+. ++.++|+++++++........... .+.+. ..+.+++ + ++|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~---~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A---DADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C---CCCEEEECC
Confidence 79999999999999999998886 799999998765433322111000 01222 2333333 3 499999986
Q ss_pred C
Q 011394 82 K 82 (487)
Q Consensus 82 p 82 (487)
-
T Consensus 77 G 77 (307)
T cd05290 77 G 77 (307)
T ss_pred C
Confidence 4
No 279
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.63 E-value=0.0034 Score=54.85 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.||.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+.. .....+..-+...++.+.++ .+++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 79999976433222221100 00000011111222333321 1444455555432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
.+..+..+. ..-++||+++.. +.....+.+.+.++++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 123333333 455899998765 3445566777888999999887664
No 280
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.63 E-value=0.0047 Score=63.67 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=60.5
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHC-CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
+++||+|+| .|..|..|.+.|.++ .++|..+.++...-+.+................+.+.. .++++|+||+++|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCH
Confidence 356999999 599999999999998 67999887765443222221100000001111122211 12249999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+ ...+++.. +..|..|||.|+..
T Consensus 115 ~-~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 115 G-TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred H-HHHHHHHH----HhCCCEEEEcCchh
Confidence 6 34444443 34689999999765
No 281
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.032 Score=59.75 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=72.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--CCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV--KAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v--p~~ 84 (487)
.++|.|+|+|..|.+.++.|.+.|++|+++|++++..+.+.+.+. .+.......+..+. +|+||.+- |..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~-----~~~~~~~~~~~l~~---~D~VV~SpGi~~~ 83 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGV-----ATVSTSDAVQQIAD---YALVVTSPGFRPT 83 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCC-----EEEcCcchHhHhhc---CCEEEECCCCCCC
Confidence 358999999999999999999999999999988776555443221 11111222333343 89988864 333
Q ss_pred hh-HHHHHH---------HHhhcc------c-C-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 85 AP-VDETIK---------TLSAYM------E-K-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 85 ~~-v~~vl~---------~l~~~l------~-~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
.. +...-+ ++.-.+ . + ..+-|-.|++...++.-+...+...|....-.+-.|.+
T Consensus 84 ~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p 155 (488)
T PRK03369 84 APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP 155 (488)
T ss_pred CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence 22 111110 111111 1 2 23556667777666665667777766544333334443
No 282
>PRK05442 malate dehydrogenase; Provisional
Probab=96.61 E-value=0.0095 Score=60.12 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=59.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH--HHH----HHHHhhhhcCCCCccccCCHHHHHhhc
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVD----ETVERAKKEGDLPLFGFRDPESFVNSI 71 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~l~~~~~~~g~~~~~~~~s~~e~~~~l 71 (487)
++.||+|||+ |.+|.++|..|+..|. ++.++|++++ +++ ++....... ..+.+...+..+.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~y~~~~-- 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL-LAGVVITDDPNVAFK-- 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh-cCCcEEecChHHHhC--
Confidence 4569999998 9999999999988764 7999998543 222 122111000 001223333333334
Q ss_pred CCCcEEEEecCC----Ch-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 72 QKPRVIIMLVKA----GA-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 72 ~~advIi~~vp~----~~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++|+||++.-. +. .++++...+..+..+..++|..||.
T Consensus 80 -daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 80 -DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred -CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 39999997642 11 1333335555555566777777753
No 283
>PRK08328 hypothetical protein; Provisional
Probab=96.60 E-value=0.017 Score=55.34 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=72.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCc-cccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPL-FGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
.+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+.++... ....+- ..+...++.++.+ .+++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999997 788999876555444432110 000000 0011111112211 277777775532
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
- .++-+++ .+.+-++|||+.-. +..-..+.+.+.+.++.++.+.+.|.
T Consensus 107 ~-~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 107 L-SEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred C-CHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 1 1222222 34566899999765 33333345566788999988776543
No 284
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.60 E-value=0.014 Score=58.75 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=59.9
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhcC--C-CCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKEG--D-LPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~ 73 (487)
-.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.......... . .+.....+..+.++ +
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---d 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK---D 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC---C
Confidence 358999998 9999999999998885 799999965 33332221111000 0 01222223333333 3
Q ss_pred CcEEEEecCCC----h-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
||+||++.-.+ . .++++..++..+.++..++|..||.
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 99999986432 1 1334445666665546777777753
No 285
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.57 E-value=0.0028 Score=52.01 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=57.4
Q ss_pred CcEEEEcccHHHHHHHHHHH-HCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIA-EKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|..|..++.++. ..|+. +.++|.++++..+-. . ++....+.+++.+.+ +.|+.+++||+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i---~-----gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI---G-----GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE---T-----TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE---C-----CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999886544 45775 457899998653211 1 366677899998877 599999999976
Q ss_pred hHHHHHHHHhh
Q 011394 86 PVDETIKTLSA 96 (487)
Q Consensus 86 ~v~~vl~~l~~ 96 (487)
.+.++..++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666554
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.55 E-value=0.012 Score=59.08 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=57.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcC-CCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQ-KPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~-~advIi~~vp~~~~ 86 (487)
.+|+|+|+|-+|..-.+.....|.+|+++|++++|.+.+.+.++.. ....+.++..+.++ .+|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999996665555555558999999999999998887776531 22211122222111 2788888888 555
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...+ ..++++-.++-.+..
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~~ 261 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGLP 261 (339)
T ss_pred HHHHH----HHHhcCCEEEEECCC
Confidence 54444 334455555555443
No 287
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0067 Score=59.90 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=55.3
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|. .|.+++..|.+.|.+|+++++... ++.+.+++ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 3799999997 999999999999999999998321 22233344 9999999975432
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. .+.+++|.+|+|.+..
T Consensus 216 v~------~~~lk~gavViDvg~n 233 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFH 233 (283)
T ss_pred CC------HHHcCCCCEEEEEEEe
Confidence 22 1347899999999754
No 288
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.52 E-value=0.012 Score=62.23 Aligned_cols=106 Identities=13% Similarity=0.225 Sum_probs=72.7
Q ss_pred CcEEEEcc----cHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.+|+|||. |.+|..+.++|.+.|| +|+..|+..+.+ . ++..+.+++|+-.. +|++++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~v 72 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIVV 72 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEec
Confidence 46999999 8899999999999999 566566553321 0 35678889988665 89999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCch-------hHHHHHHHHHHcCCeEEe
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-------NTERREKAMAELGLLYLG 131 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-------~~~~~~~~l~~~g~~~i~ 131 (487)
|.. .+.++++++... .-..+||- |.+.+. ..+++.+..++.|+++++
T Consensus 73 p~~-~~~~~l~e~~~~-gv~~~vi~-s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 73 PAK-YVPQVVEECGEK-GVKGAVVI-TAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred CHH-HHHHHHHHHHhc-CCCEEEEE-CCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 975 677788777653 23344443 333322 123445556677887775
No 289
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.49 E-value=0.0097 Score=60.12 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-C-CcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.++|.|+|+ |.||+.+++.|+++ | .+|++++|+++++..+.++... .. ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcC
Confidence 358999998 89999999999864 5 5999999999988887765321 11 1245555554 9999988765
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
+..+ +++. ..+.++.++||.+- |.+..... ...|+.+++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~~v---~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDTKV---QGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCccc---CCCCEEEEeCCcc
Confidence 4321 1111 23468899999974 34443222 2267777776643
No 290
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.036 Score=59.09 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccC--CHHHHHhhcCCCcEEEEe--cC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFR--DPESFVNSIQKPRVIIML--VK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~--s~~e~~~~l~~advIi~~--vp 82 (487)
+++|.|+|+|..|.++|+.|.+.|++|+++|++.....++.+.. ++.... ...+...+ +|+||.+ +|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~Spgi~ 85 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTSPGWR 85 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeCCCCC
Confidence 46899999999999999999999999999998876554433321 122221 22333333 8888876 44
Q ss_pred CChh-HHHHH-------H--HHhhc------c-cCC-CEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 83 AGAP-VDETI-------K--TLSAY------M-EKG-DCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 83 ~~~~-v~~vl-------~--~l~~~------l-~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
.... +...- . ++.-. . .+. .+-|-.|++...++.-+...+...|...
T Consensus 86 ~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 86 PDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred CCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 3322 22111 0 11101 1 122 3555566666555555667777766544
No 291
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.043 Score=58.22 Aligned_cols=117 Identities=14% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
.++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.+ +.......+... ++|+||.+ +|+.
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~---~~d~vv~sp~i~~~ 78 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAG-------ITTADLRTADWS---GFAALVLSPGVPLT 78 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcC-------ccccCCChhHHc---CCCEEEECCCCCcc
Confidence 35899999999999999999999999999998765444443322 222111112223 38988863 3322
Q ss_pred h-----hHHHHHH---------HHhhcc------cCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 A-----PVDETIK---------TLSAYM------EKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~-----~v~~vl~---------~l~~~l------~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
. .+....+ ++.... ....|-|-.|++...++.-+...+...|..+...+
T Consensus 79 ~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~g 147 (460)
T PRK01390 79 HPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGG 147 (460)
T ss_pred CCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcC
Confidence 1 2332221 111111 12235555666665555556677777776554333
No 292
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.46 E-value=0.022 Score=56.58 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCCh---HHHHHHHHhhhhcCCCCccccCCHHH---HHhhcCCCcEEEEe
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKKEGDLPLFGFRDPES---FVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~l~~~~~~~g~~~~~~~~s~~e---~~~~l~~advIi~~ 80 (487)
+++.|||+|-.+++++..|+..|. +|+++||++ ++.+.+.+.........+. ..++++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~-~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEE-EechhhhhhhhhhcccCCEEEEC
Confidence 479999999999999999999886 899999995 5777776643211000011 222221 12223348999999
Q ss_pred cCCChh--HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 81 VKAGAP--VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 81 vp~~~~--v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+|.+.. .+. .... ...++++.+++|.--. |..| .+.+..+++|...+
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~ 253 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTI 253 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEE
Confidence 986531 111 1100 1235678899998743 3344 45555667776554
No 293
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.45 E-value=0.026 Score=55.76 Aligned_cols=113 Identities=15% Similarity=0.034 Sum_probs=78.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|.| .|.+|..+-.+|...|++ .++..+|.+- ++.. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~ 74 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP 74 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH
Confidence 35899999 899999999999999998 7777777631 1111 367788999987731 269999999976
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchh-HHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYEN-TERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~i~~p 133 (487)
.+.++++++...- -...|| .|.+.+.. .+++.+..++.|+++++.-
T Consensus 75 -~v~~~l~e~~~~G-vk~avI-is~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 -FAADAIFEAIDAG-IELIVC-ITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred -HHHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 5677776665521 223444 34444333 3456667778899888654
No 294
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.45 E-value=0.014 Score=54.59 Aligned_cols=126 Identities=13% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hc--CCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KE--GDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~--g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+.++.- .. ...+..-+....+.++.+ .+++-+....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 69999977432222221100 00 000000111122222222 2666666654
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
... .+..+.....+.+-++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~--~~~~~~~~~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDS--LSNDSNIEEYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred ccc--ccchhhHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 321 10011122233456889988543 4555556677888899888876544
No 295
>PRK05086 malate dehydrogenase; Provisional
Probab=96.44 E-value=0.021 Score=57.31 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHH---CCCcEEEEeCChHHH---HHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEE
Q 011394 8 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVII 78 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi 78 (487)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+.+. .. ...+.. .+++.+.++ ++|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~-~~--~~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHI-PT--AVKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcC-CC--CceEEEeCCCCHHHHcC---CCCEEE
Confidence 68999999 9999999988854 346899999985431 112110 00 001222 234334444 499999
Q ss_pred EecCCCh---------------hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 79 MLVKAGA---------------PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 79 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|.-... .++++++.+.++ .+..+|+..||..
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9975421 122333444444 4667888887754
No 296
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.0092 Score=58.60 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=57.6
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-| .+|.++|..|.++|.+|++++... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------------------~~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------------------KDLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------------------HHHHHHHHh---CCEEEEecCCCCc
Confidence 479999999 999999999999999999986432 123455565 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23468999999998654
No 297
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.43 E-value=0.035 Score=52.26 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=47.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCccc---cCCHHHHHhhcCCCcEEEEecCC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFG---FRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~---~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+.++.+.+ ++.. .....+ .. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 4899999999999999999999999999988754 344554433 1222 112233 33 38898888765
Q ss_pred C
Q 011394 84 G 84 (487)
Q Consensus 84 ~ 84 (487)
+
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 4
No 298
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.42 E-value=0.026 Score=47.86 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHHC----CCcEE-EEeCChHHHH-HHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 14 GLAVMGQNLALNIAEK----GFPIS-VYNRTTSKVD-ETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 14 GlG~mG~~lA~~L~~~----G~~V~-v~dr~~~~~~-~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
|+|.||+.++..|.+. +++|. ++||+ .... ....... +...+.+++++.+.. .+|+||-|.+. ..+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 45555 67888 1110 0111111 135678999998832 39999999544 344
Q ss_pred HHHHHHHhhcccCCCEEEecCCCCch---hHHHHHHHHHHcCCeEE
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNEWYE---NTERREKAMAELGLLYL 130 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~i 130 (487)
.+.+ .+.+..|.-||..|..... .-.++.+..++.|.+|.
T Consensus 73 ~~~~---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 73 AEYY---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHH---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHH---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 4443 4456688888887765433 22233344455566553
No 299
>PLN02477 glutamate dehydrogenase
Probab=96.42 E-value=0.022 Score=59.11 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=72.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEeCC----------hHHHHHHHHhhhhcCCC-CccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGDL-PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~-~~~~~~s~~e~~~~l~~ad 75 (487)
++|+|.|+|++|+.+|+.|.+.|..|+ +.|.+ .+.+.+..+......++ +.+ .-+.+++... +||
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCccceec--ccc
Confidence 589999999999999999999999988 66776 55543333322110000 011 1133444332 499
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
+++-|--...-..+.. +.+ +=++|+..+|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 9988754442222222 223 4578888888753 556678889999988843
No 300
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.42 E-value=0.011 Score=59.71 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=58.2
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChHH--HHHHHHhhhhcC--C-CCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKKEG--D-LPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~a 74 (487)
+||+|||+ |.+|.++|..|+..|. ++.++|++++. ++..+....... . .++....+..+.++ ++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---da 79 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK---DA 79 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC---CC
Confidence 58999999 9999999999998876 79999995432 322111110000 0 01222233333333 49
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 75 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
|+||++.-.+ .. ++++...+..+.++..++|..||.
T Consensus 80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 9999986432 11 333335555555446677777753
No 301
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.39 E-value=0.019 Score=50.47 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|+| ....|.+++..|.+.|.+|++++++. .++++.+++ +|+|+.++.....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 3677777 56677777777777777777776532 145566666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ .+.+++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24588999999988654
No 302
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.38 E-value=0.027 Score=50.60 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|-|||.|.+|...++.|.+.|++|++++++ ..+++.+.. .+... ..+++ ..+.++|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 57999999999999999999999999999643 334443321 11111 11111 1244589888887665 5
Q ss_pred HHHHHHHH
Q 011394 87 VDETIKTL 94 (487)
Q Consensus 87 v~~vl~~l 94 (487)
+...+...
T Consensus 83 ~N~~i~~~ 90 (157)
T PRK06719 83 VNMMVKQA 90 (157)
T ss_pred HHHHHHHH
Confidence 66555433
No 303
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.37 E-value=0.022 Score=59.58 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=62.7
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-------CC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~ 73 (487)
.-||+|||+ |.+|..+|..|+.. |. ++.++|+++++++...-...... ..++.+..+..+..++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd--- 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD--- 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---
Confidence 358999999 99999999999988 65 78999999988765433221100 0023322333333343
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ .. ++++...+..+..+..+||..||-
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 99999986432 11 223334455534566677777753
No 304
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.36 E-value=0.0069 Score=61.47 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=58.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcE---EEEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~v 81 (487)
|+||+||| .|..|..+.+.|.+++|++ ....++.+.-+.+.-.+. .+...+ +..++ + .+|+||+|+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~-----~i~v~d~~~~~~-~---~vDvVf~A~ 71 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGK-----ELKVEDLTTFDF-S---GVDIALFSA 71 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCc-----eeEEeeCCHHHH-c---CCCEEEECC
Confidence 46899998 8999999999999988854 555444333222211110 122221 22222 3 399999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+ ...++...+ +..|..|||.|+..
T Consensus 72 g~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 72 GGS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred ChH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 986 444444443 34688999999653
No 305
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.35 E-value=0.018 Score=54.54 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=64.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+.++.......+-.-+....+.++.+ .+++-+...+..-
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~i- 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEKI- 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeeec-
Confidence 589999999999999999999998 5999998832222222110000000000011112222211 1445555544321
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHc-CCeEEecC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAEL-GLLYLGMG 133 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~p 133 (487)
....+. ..+..-++|||++-. +.....+.+.+.+. ++.++.+.
T Consensus 107 ~~~~~~---~~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIE---ELFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHH---HHHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 111122 234456899999543 34434455666666 88887653
No 306
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.32 E-value=0.0099 Score=54.85 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcccc--CC----HHHHHhhcCCCcEEEEe
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGF--RD----PESFVNSIQKPRVIIML 80 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~--~s----~~e~~~~l~~advIi~~ 80 (487)
++|.||| ...+|.++|..|.++|.+|+++|.+.-.. +...+.. +-..+ .+ +.+.+++ +|+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 4799999 66789999999999999999998654322 1100000 00011 12 5566666 9999999
Q ss_pred cCCChh-HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 81 VKAGAP-VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 81 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++.+.. +. .+.+++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 988753 23 24578999999999764
No 307
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.29 E-value=0.0073 Score=54.79 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=56.9
Q ss_pred CCCCcEEEEcccHHHHHHHHH-HH-HCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 5 KQLTRIGLAGLAVMGQNLALN-IA-EKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~-L~-~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.++.++.+||.|++|.+++.. +. ++|+++. +||.+++++...... ..+.-.+++++.+++ .+.|+.|+||
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~------v~V~~~d~le~~v~~-~dv~iaiLtV 154 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGD------VPVYDLDDLEKFVKK-NDVEIAILTV 154 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCC------eeeechHHHHHHHHh-cCccEEEEEc
Confidence 356789999999999999843 44 5677655 789999976443321 123445566666664 2489999999
Q ss_pred CCChhHHHHHHHHhh
Q 011394 82 KAGAPVDETIKTLSA 96 (487)
Q Consensus 82 p~~~~v~~vl~~l~~ 96 (487)
|.. ....+.+.|..
T Consensus 155 Pa~-~AQ~vad~Lv~ 168 (211)
T COG2344 155 PAE-HAQEVADRLVK 168 (211)
T ss_pred cHH-HHHHHHHHHHH
Confidence 975 44555555543
No 308
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.063 Score=57.61 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=69.0
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--c
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--V 81 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--v 81 (487)
.+++|.|||+|..|.++|+.|.+.|++|+++|.... ..+.+.+.+.. ..+..-....+.... +|+||.+ +
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv~sp~I 79 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVALSPGL 79 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEEECCCC
Confidence 346899999999999999999999999999997542 23344333210 011111122333444 8999886 4
Q ss_pred CCC-----hhHHHH-------------HHHHhhcc-----cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAG-----APVDET-------------IKTLSAYM-----EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.. ..+... +..+...+ .+..|-|-.|++...++.-+...+...|....
T Consensus 80 ~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 80 SPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred CCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 442 112111 11122111 12345666777776666666777777775543
No 309
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.28 E-value=0.023 Score=57.67 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=71.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCC--CccccCCHHHHHhhcCCCcEEEEecC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDL--PLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~--~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+.... ... +..-+....+.++.+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 9999999754443333221000 000 000011122222222 1555555554
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
..-. ...+. +.+..-++|||++... .....+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDNF-ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeeee
Confidence 3311 12222 3345669999997653 444445666677788888766544
No 310
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.25 E-value=0.036 Score=58.05 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=75.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEE-e----------CChHHHHHHHHhhh-hcCCC----CccccCCHHHHHhhc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAK-KEGDL----PLFGFRDPESFVNSI 71 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~l~~~~~-~~g~~----~~~~~~s~~e~~~~l 71 (487)
++|+|.|.|++|+.+|+.|.+.|..|++. | .+.+.+.+..+... ....+ +.. ..+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccccc-
Confidence 58999999999999999999999999876 7 56665544433210 00000 001 1133343331
Q ss_pred CCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 72 QKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 72 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+||+++-|.....-..+....+.. .+=++|+..+|... +.+..+.|.++|+.|+.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 499999998766444444444432 13467888887753 55667788999998884
No 311
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.016 Score=57.02 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=57.5
Q ss_pred CcEEEEcccH-HHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||-+. +|.++|..|.+.|.+|++++.. +.++.+..++ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF---------------------TDDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc---------------------CCCHHHHHhh---CCEEEEccCCccc
Confidence 4799999888 9999999999999999999842 2245566666 9999998876543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+. ...+++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 22 2357899999999865
No 312
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.22 E-value=0.0068 Score=57.40 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=51.5
Q ss_pred CCcEEEEcccHHHHHHHHHH--HHCCCcEE-EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 7 LTRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++...... + ..+....++.++++. .++|.+++|+|.
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~-g-----~~v~~~~~l~~li~~-~~iD~ViIa~P~ 156 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG-G-----IPVYHIDELEEVVKE-NDIEIGILTVPA 156 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC-C-----eEEcCHHHHHHHHHH-CCCCEEEEeCCc
Confidence 35899999999999999863 35678777 56998776532211 0 012233456666653 248999999998
Q ss_pred ChhHHHHHHHH
Q 011394 84 GAPVDETIKTL 94 (487)
Q Consensus 84 ~~~v~~vl~~l 94 (487)
.. ..++.+.+
T Consensus 157 ~~-~~~i~~~l 166 (213)
T PRK05472 157 EA-AQEVADRL 166 (213)
T ss_pred hh-HHHHHHHH
Confidence 63 34444333
No 313
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.015 Score=57.06 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=57.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ .+|.++|..|.++|..|++++... .++++.+++ +|+||.++..+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 379999977 999999999999999999886421 245556666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 32 24578999999998754
No 314
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.016 Score=56.95 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSK---------------------TQDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6789999999999999999998743 2245666666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999998764
No 315
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.20 E-value=0.015 Score=58.46 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=49.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc--cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG--FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~--~~s~~e~~~~l~~advIi~~vp 82 (487)
|||.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+.. +.. ..+++.+.+.++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~-----~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAE-----LVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCE-----EEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 69999999999999999999999998765444322110 111 1244444444556899888754
No 316
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.18 E-value=0.049 Score=54.17 Aligned_cols=104 Identities=12% Similarity=0.132 Sum_probs=77.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
++++.+|.++|.+..+.+++++|++.+-++ .++|..++.++.+.| ..+|+.++.....+.+++ . ++.
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~-~-----~~~ 229 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKRT-F-----NPG 229 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcCC-C-----CCC
Confidence 789999999999999999999999988765 349999999999877 467887775443332221 1 122
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|.- +-....++-++..|-+.|+|+|....+..+|+..
T Consensus 230 f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 230 FKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred Cch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 322 2234566888899999999999988888877643
No 317
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.17 E-value=0.038 Score=54.78 Aligned_cols=116 Identities=11% Similarity=-0.036 Sum_probs=75.7
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..||.|.| .|.+|..+..+|.+.||+ .+|=.||.+ .+++. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 46899999 588999999999999997 555444431 11111 366788998887621 269999999975
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
.+.++++++...- -+..||-.+.-...+.+++.+..++.|+++++.--.
T Consensus 77 -~v~~~l~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 77 -FAADAILEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred -HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence 6677776665522 223344343333222346667777889998875433
No 318
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.16 E-value=0.023 Score=56.56 Aligned_cols=72 Identities=10% Similarity=0.213 Sum_probs=45.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+||+|||+|.+|+++|..|...+. ++.++|+++++++-.+....... ........+ .+ -+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-hhhhcCCCEEEEeC
Confidence 589999999999999999987764 89999999665433221111000 001222222 11 22234499999987
No 319
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.019 Score=56.39 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|+++... +.++++.+++ ||+||.++..+.-
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6678999999999999999998642 2345666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24578999999999764
No 320
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.13 E-value=0.019 Score=48.00 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH-HHHHHh
Q 011394 17 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE-TIKTLS 95 (487)
Q Consensus 17 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~-vl~~l~ 95 (487)
.-+..++..|.+.|.+|.+||+.-............ +++.++++++..+. +|.||++++.+. .+. -++.+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~-f~~l~~~~~~ 88 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDE-FRELDWEEIA 88 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GG-GGCCGHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHH-HhccCHHHHH
Confidence 346778999999999999999886654332211001 36778899988887 999999999874 443 346677
Q ss_pred hcccCCCEEEecCCCC
Q 011394 96 AYMEKGDCIIDGGNEW 111 (487)
Q Consensus 96 ~~l~~g~iiId~st~~ 111 (487)
..+.++.+|+|+-+..
T Consensus 89 ~~~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 89 KLMRKPPVIIDGRNIL 104 (106)
T ss_dssp HHSCSSEEEEESSSTS
T ss_pred HhcCCCCEEEECcccc
Confidence 7777899999987653
No 321
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.018 Score=56.91 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|+++... +.++++.+++ ||+||.++.-+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6789999999999999999998532 2345666676 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24578999999998764
No 322
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.11 E-value=0.018 Score=56.39 Aligned_cols=74 Identities=12% Similarity=0.328 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.||| ...+|.+++..|.++|.+|++++.. +.++.+.+++ ||+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK---------------------TKNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6789999999999999999999743 2246666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .+++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24578999999998654
No 323
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.08 E-value=0.021 Score=56.08 Aligned_cols=74 Identities=15% Similarity=0.318 Sum_probs=58.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++.. +.++++..++ ||+||.++.-+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~---------------------T~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK---------------------TQNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEeCCCcCc
Confidence 4799999 7789999999999999999999743 2245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 32 24578999999999754
No 324
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.02 Score=56.18 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ ||+||.++.-+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK---------------------TRNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 6779999999999999999998632 2245566666 9999999987754
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24578999999998654
No 325
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.02 E-value=0.019 Score=57.96 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCCh--HHHHHHHHhhhhc--CCC-CccccCCHHHHHhhcCCCc
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKKE--GDL-PLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~l~~~~~~~--g~~-~~~~~~s~~e~~~~l~~ad 75 (487)
||+|||+ |.+|..++..|+..|. ++.++|+++ ++++......... ... ......+..+.+++ +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999998663 499999987 5432221110000 000 12222344444444 99
Q ss_pred EEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCC
Q 011394 76 VIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 76 vIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (487)
+||++.-.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999986332 11 33333455555445666666664
No 326
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.01 E-value=0.057 Score=55.59 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHCCC-c----EE--EE--eCChHHHHHHHHhhhhcC--C-CCccccCCHHHHHhhcCC
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKKEG--D-LPLFGFRDPESFVNSIQK 73 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~l~~~~~~~g--~-~~~~~~~s~~e~~~~l~~ 73 (487)
--||+|||+ |.+|..+|..|+..|. . |. ++ |++.++++.......... . .++....+..+..+ +
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k---d 120 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE---D 120 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC---C
Confidence 358999999 9999999999998875 2 34 44 888887655433221100 0 02332333333334 3
Q ss_pred CcEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCCC
Q 011394 74 PRVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 74 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+|+||++.-.+ .. ++++...+.++..+..+||-.||.
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 99999976332 11 233334555555567778878754
No 327
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.065 Score=51.64 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCcEEEEcc-cHHHHHHHHHHHHCC-CcEE-EEeCChHHH-----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE
Q 011394 6 QLTRIGLAGL-AVMGQNLALNIAEKG-FPIS-VYNRTTSKV-----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 6 ~~~kIgiIGl-G~mG~~lA~~L~~~G-~~V~-v~dr~~~~~-----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI 77 (487)
+||||+|+|+ |+||+.+.+.+.+.. +++. .++|.+... .++...+ .+++...+++.....+ +|++
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~ 73 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVL 73 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEE
Confidence 3689999997 999999999999876 4544 668876532 2222111 1134445554444444 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
|=...+. .+...++-. +..+..+|-.+|+......+..+.+.++ +..+-+|
T Consensus 74 IDFT~P~-~~~~~l~~~---~~~~~~lVIGTTGf~~e~~~~l~~~a~~-v~vv~a~ 124 (266)
T COG0289 74 IDFTTPE-ATLENLEFA---LEHGKPLVIGTTGFTEEQLEKLREAAEK-VPVVIAP 124 (266)
T ss_pred EECCCch-hhHHHHHHH---HHcCCCeEEECCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 8765443 444444433 3456666667777765554444444443 4444444
No 328
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.11 Score=49.34 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 47888874 8999999999999999999999999888776543
No 329
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.00 E-value=0.013 Score=59.27 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=55.7
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
+|++|+|+| +|..|..+.+.|.+++|.+. .. .+.+...+....... ...+... +..++ +. +|++|+++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~--~l~~~~~-~~~~~-~~---vD~vFla~ 74 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK--NLRVREV-DSFDF-SQ---VQLAFFAA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc--ceEEeeC-ChHHh-cC---CCEEEEcC
Confidence 457999999 59999999999998877433 33 222222111111000 0011111 22333 43 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++ ....++..+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 75 GAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 975 3444444443 4688999999765
No 330
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.99 E-value=0.022 Score=55.92 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|++++... .++.+..++ ||+||.++.-+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 3799999 67899999999999999999997432 245555565 9999999987753
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 32 24578999999998653
No 331
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.96 E-value=0.044 Score=52.89 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE--
Q 011394 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI-- 77 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI-- 77 (487)
|+...+.++|-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+.... . . +++.
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~ 61 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--------------A--G---GKAIGV 61 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--------------c--C---ceEEEE
Confidence 555444456878875 9999999999999999999999999877666543211 0 0 2222
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..-+.+...++.+++++.....+-+.||++...
T Consensus 62 ~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 62 AMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 222334445566666655544555788887654
No 332
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.024 Score=55.68 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++... .++++..++ ||+||.++.-+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 66789999999999999999987532 245566666 9999999987654
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LR------SDMVKEGVIVVDVGINR 232 (282)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 23578999999998654
No 333
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.93 E-value=0.024 Score=55.93 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=58.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.+++..|.++|.+|++++... .++.+.+++ ||+||.++.-+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 4799999 67899999999999999999987532 245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 24578999999998654
No 334
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.024 Score=55.75 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|++++.. +.++++.+++ +|+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------------------t~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------------------TKNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------------------chhHHHHHHh---CCEEEEecCCCCc
Confidence 4799999 7889999999999999999999642 2245566666 9999999987643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 24568999999998654
No 335
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.92 E-value=0.034 Score=53.65 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=73.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|-+|..+|.+|++.|. +++++|.+.-....+.++.-.. ...+-.-+....+.++.+ .+++-+.+++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999997 8889998755443333221000 000000111122222222 2666666665331
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
. ... +...+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|.
T Consensus 104 ~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 104 D-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred C-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEeccc
Confidence 1 111 223345678999998653 4444456677788999987765543
No 336
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.91 E-value=0.027 Score=53.70 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=51.2
Q ss_pred EEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEecCC
Q 011394 10 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 10 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
|.|+| .|.+|+.++..|.+.+++|.+.-|++. ..+.+...+... +. -..+.+.+.+.|+++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCc
Confidence 78998 599999999999999999999999864 355555543210 11 133566777777779999998884
No 337
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.91 E-value=0.041 Score=52.68 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..+|.+|++.|. +++++|.+.=....+.++.-.. ...+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 8889987753333332211000 000000111222222222 145555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+- +.+.+..-++||++... +..-..+.+.+.+.++.++.+.+.|
T Consensus 100 i~-~~~---~~~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LD-AEN---AEELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eC-HHH---HHHHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 111 22233456899988654 4444445666778899999887655
No 338
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.91 E-value=0.059 Score=60.01 Aligned_cols=93 Identities=11% Similarity=0.189 Sum_probs=68.3
Q ss_pred EEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec-CCCCChhhh--------cCCC-c
Q 011394 77 IIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM-GVSGGEEGA--------RHGP-S 146 (487)
Q Consensus 77 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pvsgg~~~a--------~~G~-~ 146 (487)
||+|+|.. .+.++++++.++++++.+|.|.++++........+.+......|++. |+.|.+..- .+|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999975 78899999999999999999999998555554444433323568865 888886432 2455 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhccC
Q 011394 147 LMP---GGSFEAYKYIEDILLKVAAQV 170 (487)
Q Consensus 147 i~~---gg~~~~~~~v~~ll~~ig~~~ 170 (487)
+++ ..++++++.++++++.+|+++
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~ 106 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV 106 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 333 236788999999999999873
No 339
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.90 E-value=0.052 Score=50.75 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|.+|..++++|+..|. +++++|.+.=....+.++.-. ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 3589999999999999999999998 699999774322222211000 0000000111222222222 266666655432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.+...+ .+..-++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~---~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEE---FFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHH---HHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1111122 2334578888754 34455556677788899998877654
No 340
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.90 E-value=0.1 Score=55.08 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=66.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH----HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v-- 81 (487)
++|.|+|.|.+|.++|+.|++.|++|+++|++.... +++.+.+. .+.......++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~-----~~~~~~~~~~~~~~--~~d~vV~s~gi 78 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGI-----KVICGSHPLELLDE--DFDLMVKNPGI 78 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCC-----EEEeCCCCHHHhcC--cCCEEEECCCC
Confidence 479999999999999999999999999999875332 23332221 11111233333221 278887754
Q ss_pred CCCh-hHHHHH---------HHHhhcc-cCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAGA-PVDETI---------KTLSAYM-EKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|.+. .++... -++...+ ....|-|-.|++...++.-+...+...|....
T Consensus 79 ~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~ 138 (447)
T PRK02472 79 PYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHAL 138 (447)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeE
Confidence 3322 222221 1222222 23345666667766666556677777665443
No 341
>PRK08223 hypothetical protein; Validated
Probab=95.88 E-value=0.044 Score=53.96 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|+.++.+|+..|. ++.++|.+.=....+.++... ....+-.-+...++.+.++ .+++=|.+.+..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 888998875444334332110 0000001112223333322 144444444432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCc-hhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWY-ENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+.+.++ +..-++|||++.... .....+.+.+...++.++.+.+.|
T Consensus 106 l~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 106 IG-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred cC-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 11 1112222 345689999886532 333345566778899998876554
No 342
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.87 E-value=0.027 Score=55.74 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=57.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|.+|++++.. +.++++.+++ +|+||.++.-+.-
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 4799999 6678999999999999999999643 2346667776 9999999976532
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. .+.+++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24578999999998754
No 343
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.86 E-value=0.063 Score=52.80 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=71.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.++.|+|+|-.+++++..|++.|. +|+++||++++.+.+.+... .... .++ . ...+|+||-|+|-+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~~---~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEWR---PDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccch---hhc-c-cccCCEEEECCccccC
Confidence 379999999999999999999997 59999999999988876431 1111 111 1 1238999999985521
Q ss_pred --HH--H-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 --VD--E-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 --v~--~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+ . -+. ...+.++.+++|.--.. ..| .+.+..+++|...+
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~i 236 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALP-AET-PLIRYARARGKTVI 236 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCC-ccC-HHHHHHHHCcCeEe
Confidence 00 0 011 12366788999987543 333 35555667776554
No 344
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.096 Score=55.88 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEecC-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLVK- 82 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~vp- 82 (487)
.++|.|||.|..|..+|..|++.|++|+++|+++. ....+.+..... ++... .... ... .+|+||++.-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~~---~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LPE---DTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-ccC---CCCEEEECCCc
Confidence 35799999999999999999999999999996643 222222221111 12222 1222 222 3899998752
Q ss_pred --CChhHHHHH---------HHHh-hcccCC----CEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 83 --AGAPVDETI---------KTLS-AYMEKG----DCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 83 --~~~~v~~vl---------~~l~-~~l~~g----~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
+...+...- -+++ ..+.+. .|-|-.|++...++.-+...+...|....
T Consensus 89 ~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~ 152 (480)
T PRK01438 89 RPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA 152 (480)
T ss_pred CCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE
Confidence 222111111 1122 222221 36666677776666556677777665443
No 345
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.84 E-value=0.029 Score=55.11 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=58.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH--CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+++.||| ...+|.++|..|.+ ++..|+++... +.++++.+++ +|+||.++.-+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 4799999 67899999999998 68899998753 2246666676 99999999876
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 4332 24578999999998764
No 346
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.82 E-value=0.09 Score=53.39 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCcEEEEcccHHHHHHHHHHHH--------CCC--cEE-EEeCChHH-------HHHHHHhhhhcCCC-Ccc-----ccC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAE--------KGF--PIS-VYNRTTSK-------VDETVERAKKEGDL-PLF-----GFR 62 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~--------~G~--~V~-v~dr~~~~-------~~~l~~~~~~~g~~-~~~-----~~~ 62 (487)
+++|+|+|+|++|+.+++.|.+ .|. +|. +.|++... .+++.+.....+.. .+. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 3689999999999999998877 464 333 44654221 22222211110000 010 012
Q ss_pred CHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCch-hHHHHHHHHHHcCCeEE-ecCCCCChh
Q 011394 63 DPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYE-NTERREKAMAELGLLYL-GMGVSGGEE 139 (487)
Q Consensus 63 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pvsgg~~ 139 (487)
+++++++.. .+|+||-+++.. ....... ..+..|..||-.++.... .-+++.+..+++|..+. .+.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~~---~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWHL---EALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHHH---HHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 667776432 389999888643 4444433 445678888877764211 22234444455677665 555666643
No 347
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.79 E-value=0.093 Score=55.72 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCcEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEec--
Q 011394 7 LTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~v-- 81 (487)
.++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+++.+.+ +... ....+... ++|+||.+-
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~---~~d~vv~spgi 76 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIK---DADVVVYSSAI 76 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCC---CCCEEEECCCC
Confidence 458999999999999 89999999999999997653 233343322 2222 11223333 389888863
Q ss_pred CCCh-hHHHHH---------HHHhhcc-cC-CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 82 KAGA-PVDETI---------KTLSAYM-EK-GDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l-~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
|... .+.... -+++..+ .+ ..+-|-.|++...++.-+...++..|.
T Consensus 77 ~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 77 PDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 4332 222211 1232222 22 346666777776666666777777774
No 348
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.77 E-value=0.85 Score=46.64 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=93.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCC-----------------Cc-cccCCHHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDL-----------------PL-FGFRDPESF 67 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~-----------------~~-~~~~s~~e~ 67 (487)
|.+|-|+|+|..+..+|..+.+.+. .|-+.+|...+-+.+.+.....+.. .+ ....+.+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i 80 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEI 80 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHh
Confidence 5689999999999999999998875 7999999888777766544321100 00 123445555
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcC--CeEEe-------cCCCCC
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELG--LLYLG-------MGVSGG 137 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~-------~pvsgg 137 (487)
... =|.+|+|||.+ +-.+|+++|-.. |..=+.||-.|...-.. .-+...+.+.| +.+|. .-.+.+
T Consensus 81 ~g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~ 155 (429)
T PF10100_consen 81 EGE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDG 155 (429)
T ss_pred ccc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccC
Confidence 554 79999999987 667788766543 43445555555544222 22333444433 22222 122322
Q ss_pred hhhh---cCCC--ccccC---CCHHHHHHHHHHHHHHhcc
Q 011394 138 EEGA---RHGP--SLMPG---GSFEAYKYIEDILLKVAAQ 169 (487)
Q Consensus 138 ~~~a---~~G~--~i~~g---g~~~~~~~v~~ll~~ig~~ 169 (487)
.... ..|. .+.+| ++....++++.+|+.++-+
T Consensus 156 ~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 156 EQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCe
Confidence 2111 1121 34444 3445678888899888765
No 349
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.77 E-value=0.061 Score=53.67 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=58.2
Q ss_pred EEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcC---CCCccccCCHHHHHhhcCCCcEEEEecCCC--
Q 011394 12 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG---DLPLFGFRDPESFVNSIQKPRVIIMLVKAG-- 84 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g---~~~~~~~~s~~e~~~~l~~advIi~~vp~~-- 84 (487)
|||+|.+|..+|..|+..+. ++.++|++.++++.......... ..+.+...+..+..+ +||+||++.-.+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~---daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCK---DADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHC---CCCEEEECCCCCCC
Confidence 69999999999999998886 79999998876554433221100 001222323223333 399999986432
Q ss_pred --h-----------hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 --A-----------PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 --~-----------~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
. .++++.+.+..+ .+..++|..||.
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 133334555554 466777777764
No 350
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.065 Score=51.12 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCC
Q 011394 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 5 ~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~ 83 (487)
.+|+++-|.| .|.+|..+++.|+++|++|++.+|++++.+++.+... +.-.. ..++..=+.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------~~~~~---~~~~~~D~~~ 66 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELR--------------STGVK---AAAYSIDLSN 66 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------hCCCc---EEEEEccCCC
Confidence 3456788887 5999999999999999999999999887665543221 00001 2223223344
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
...+...++.+.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 67 PEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 445555666655544445677776543
No 351
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.092 Score=55.49 Aligned_cols=122 Identities=16% Similarity=0.066 Sum_probs=70.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--HHHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEe--cC
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIML--VK 82 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~--vp 82 (487)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+++.+... ++... ....+...+ +|+||.+ +|
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~~~~~~---~d~vV~sp~i~ 79 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDCELLVQ---ASEIIISPGLA 79 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCChHHhcC---CCEEEECCCCC
Confidence 599999999999999999999999999997643 2233433100 12221 112233344 8888775 34
Q ss_pred CCh-hHHHHH---------HHHhhc-ccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 83 AGA-PVDETI---------KTLSAY-MEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 83 ~~~-~v~~vl---------~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
... .+.... -+++.. +....+-|-.|++...++.-+...+...|..+.-.+..|.+
T Consensus 80 ~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 80 LDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 332 122111 123222 22234556666776666665677777777766555554443
No 352
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.75 E-value=0.11 Score=51.53 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCChh
Q 011394 325 DKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPE 404 (487)
Q Consensus 325 ~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~~ 404 (487)
++++.+|.++|.+.++.+..+.|++.+.++. ++|.+++.++|+.+ ...|++++.....+.+. +.. +-
T Consensus 166 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-d~~-----~~ 232 (296)
T PRK11559 166 GAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDR-NFK-----PG 232 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcC-CCC-----CC
Confidence 6888999999999999999999999998753 49999999999876 45677666432222221 111 11
Q ss_pred HHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 405 FAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|.- +-....++-++..|-+.|+|+|...++...|+..
T Consensus 233 f~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 233 FRI--DLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred cch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 221 1223446788889999999999999999866543
No 353
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.033 Score=54.81 Aligned_cols=74 Identities=11% Similarity=0.290 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.||| ...+|.+++..|.++|.+|++++.. +.++++..++ +|+||.++.-+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 4799999 6678999999999999999998742 2245666666 9999999986643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 33 24578999999998653
No 354
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.034 Score=54.57 Aligned_cols=74 Identities=18% Similarity=0.334 Sum_probs=57.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.+++..|.+++..|++++.. +.++++..++ ||+||.++.-+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~---------------------T~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR---------------------TADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 4799999 6789999999999999999998643 2245566666 9999999986543
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24578999999998654
No 355
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.67 E-value=0.094 Score=50.78 Aligned_cols=124 Identities=13% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|..|..++.+|+..|. +++++|.+.-....+.++... ....+-.-+....+.++.+ .+++-+.+.+..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~ 110 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINAR 110 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999999999999999997 888998775433333322110 0000001111222222221 255656665432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. ...+ ...+..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 111 i~-~~~~---~~~~~~~DiVi~~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 111 LD-DDEL---AALIAGHDLVLDCTDNV-ATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred CC-HHHH---HHHHhcCCEEEecCCCH-HHHHHHHHHHHHhCCEEEEeeecc
Confidence 11 1112 22344668999997643 333335566677888888766543
No 356
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.12 Score=48.80 Aligned_cols=85 Identities=11% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.++|-|.| .|.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+..
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~ 67 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQ 67 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHH
Confidence 35788887 69999999999999999999999998766554332110 01 334444455555
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.....+-+.||+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 68 AARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHHhCCcCEEEECCcc
Confidence 6666666665544455677776543
No 357
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.62 E-value=0.19 Score=48.80 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=70.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEE-EEe----------CChHHHHHHHHhhhhcCC----C-----CccccCCHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGD----L-----PLFGFRDPESF 67 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~g~----~-----~~~~~~s~~e~ 67 (487)
++|.|-|.|++|+..|+.|.+.|..|+ +.| .+.+.+..+.+.....+. + +.+. -+.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-FEGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-eCCcch
Confidence 589999999999999999999999888 555 233444333221110000 0 0111 144454
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
... +||+++-|--...-..+....+.. .+=++|+...|... +.+..+.|.++|+.|+.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 432 499998886544222222233321 13467888887753 336677889999998843
No 358
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.62 E-value=0.065 Score=54.15 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=57.8
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCC-------CcEEEEeCChH--HHHHHHHhhhh---cCCCCccccCCHHHHHhhcCCC
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKK---EGDLPLFGFRDPESFVNSIQKP 74 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~l~~~~~~---~g~~~~~~~~s~~e~~~~l~~a 74 (487)
.||+|+|+ |.+|..++..|+..+ .+|.++|+++. +++........ ....++....++.+.++. +
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~---a 79 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD---V 79 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---C
Confidence 48999998 999999999999854 58999999653 22221100000 000012223444444444 9
Q ss_pred cEEEEecCCC----hh-----------HHHHHHHHhhcccCCCEEEecCC
Q 011394 75 RVIIMLVKAG----AP-----------VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 75 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 109 (487)
|+||++.-.+ .. ++++...+..+..++.++|-.||
T Consensus 80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999986322 11 12333455555556677777776
No 359
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.62 E-value=0.029 Score=55.99 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=64.9
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVD 88 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 88 (487)
++-|.|.|..|+.+|.++...|.+|.+++.+|-++-+..-.| ++ +.+.+|++.. +|++|+++-...
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdG-------f~-V~~m~~Aa~~---gDifiT~TGnkd--- 276 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDG-------FR-VMTMEEAAKT---GDIFVTATGNKD--- 276 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcC-------cE-EEEhHHhhhc---CCEEEEccCCcC---
Confidence 577889999999999999999999999999998765544333 33 3457777776 999999986543
Q ss_pred HHH-HHHhhcccCCCEEEecCC
Q 011394 89 ETI-KTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 89 ~vl-~~l~~~l~~g~iiId~st 109 (487)
|+ .+-...++.|.|+.+.+.
T Consensus 277 -Vi~~eh~~~MkDgaIl~N~GH 297 (420)
T COG0499 277 -VIRKEHFEKMKDGAILANAGH 297 (420)
T ss_pred -ccCHHHHHhccCCeEEecccc
Confidence 33 233445778888877763
No 360
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.08 Score=50.60 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+.....++|-|+| .|.+|..++..|++.|++|.+.+|++++.+.+.+.... .-.+ .+++..
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~ 63 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA--------------AGGR---AHAIAA 63 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEc
Confidence 55544446788888 59999999999999999999999998877665442210 0001 222222
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+...++.+++.+.....+-+.||++...
T Consensus 64 Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 64 DLADPASVQRFFDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2334445555565555444445677776654
No 361
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.61 E-value=0.089 Score=56.81 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=70.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
+++-|+|.|-+|++++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-+.|.+..
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999999888764321 1111222222111 126788777765521
Q ss_pred -HHH-HHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 87 -VDE-TIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 87 -v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+. -+. ...++++.+++|..-.. ..| .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTP-KIT-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCC-CcC-HHHHHHHHCCCeEe
Confidence 010 011 12356788999987544 333 34455566665443
No 362
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.58 E-value=0.15 Score=52.21 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=71.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-.|+.++.+|+..|. +++++|.+.=....+.++... ....+-.-+....+.++.+ .+++-+.+.+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 888999875333223221100 0000000111122222221 2666666665432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
..++ ....+..-++|||++-.. ..-..+.+.+.+.++.|+.+.+.|-
T Consensus 108 ~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1121 222345668999998653 2323345566778998988776553
No 363
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.57 E-value=0.035 Score=56.47 Aligned_cols=92 Identities=13% Similarity=0.286 Sum_probs=56.8
Q ss_pred CCCCcEEEEc-ccHHHHHHHHHHHHCCCc---EEEE--eCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEE
Q 011394 5 KQLTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVI 77 (487)
Q Consensus 5 ~~~~kIgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advI 77 (487)
-..+||+||| .|..|..+.+.|.+.+|. +... .|+..+.-.. .+. .+.... +.+++ +. +|+|
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~-----~~~v~~~~~~~~-~~---~D~v 73 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGR-----DYTVEELTEDSF-DG---VDIA 73 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCc-----eeEEEeCCHHHH-cC---CCEE
Confidence 3456999998 899999999999998873 3322 3333322111 111 122221 22333 44 9999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|+|+|++ ........+ ...|..|||.|...
T Consensus 74 f~a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 74 LFSAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred EECCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 9999987 344444433 24689999999754
No 364
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.54 E-value=0.14 Score=52.91 Aligned_cols=123 Identities=15% Similarity=0.242 Sum_probs=68.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-.|..++.+|++.|. +++++|++.-....+.++... ....+..-+....+.++.+ .+++-+...+..-
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~~ 214 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQERV 214 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999998 899999884332222221100 0000000111122222211 1444444444321
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
. ...+.. .+..-++|||++... ..-..+.+.+.+.++.++.+.+.|
T Consensus 215 ~-~~~~~~---~~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 215 T-SDNVEA---LLQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-hHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 112222 234568999998764 332335566778899999887654
No 365
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.037 Score=54.22 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=56.9
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||-+ ..|.++|..|...|.+|++++++.. ++++.+++ +|+||.+++-+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 479999988 9999999999999999999986532 34455555 9999999975432
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. . ..+++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2368999999998653
No 366
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.51 E-value=0.041 Score=55.55 Aligned_cols=74 Identities=22% Similarity=0.343 Sum_probs=58.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.+++..|+++... +.++++.+++ +|+||.++.-+.-
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 3799999 7789999999999999999998642 2356666676 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 33 24578999999998654
No 367
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.50 E-value=0.041 Score=55.31 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.||| ...+|.++|..|.++|..|+++... +.++++..++ +|+||.++.-+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~---------------------T~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF---------------------TKDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 3799999 6678999999999999999998642 2245566666 9999999987653
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+. ...+++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 33 24578999999998653
No 368
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.49 E-value=0.065 Score=52.73 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.6
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 4788985 9999999999999999999999998764
No 369
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.49 E-value=0.14 Score=53.80 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=70.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH-HHH---HHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec-
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV- 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~v- 81 (487)
||.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+... ++|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~---~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLN---NADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhc---cCCEEEECCC
Confidence 5899999999999999999999999999976442 211 12110 0 12222 23 23333 389888753
Q ss_pred -CCCh-hHHHHH---------HHHh-hcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCCh
Q 011394 82 -KAGA-PVDETI---------KTLS-AYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGE 138 (487)
Q Consensus 82 -p~~~-~v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg~ 138 (487)
|... .+.... -+++ ..+....|-|-.|++...++.-+...+...|..+.-.+..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 4332 222111 1222 2232234566667777666666677788777765544444443
No 370
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.047 Score=53.72 Aligned_cols=74 Identities=14% Similarity=0.296 Sum_probs=56.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|++++.. +.++++.+++ ||+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 667899999999988 7899988642 2345666666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ...+++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 764322 24578999999998654
No 371
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.47 E-value=0.17 Score=49.94 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHH-HHHhhCCCCCCCcCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIK-KAYDRNADLANLLVD 402 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~-~~~~~~~~~~~ll~~ 402 (487)
.+.|+.+|+++|=+-.+.++.++|++.+-+++ ++|.+.+.++-++| --+||.++.-. ..++++. +
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~------Gld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~~-------~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA------GLDPDVVLEVISGG-AAGSWILENYGPRMLEGDF-------S 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcc-ccCChHHHhhcchhhcCCC-------C
Confidence 38899999999999999999999999998764 39999999999887 35788887632 2332221 1
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 403 PEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
|-|. ++-....++-+...|.+.|+|+|..+.+.+.|...
T Consensus 230 p~F~--v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~ 268 (286)
T COG2084 230 PGFA--VDLMLKDLGLALDAAKELGAPLPLTALAAELYAKA 268 (286)
T ss_pred cchh--HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 3332 33445677888899999999999999998866643
No 372
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.47 E-value=0.022 Score=56.85 Aligned_cols=86 Identities=33% Similarity=0.619 Sum_probs=64.1
Q ss_pred HHHHHHHH--hCCCCHHHHHHHHHhhccCc-chhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcC
Q 011394 206 EAYDVLKS--VGKLTNEELQNVFTEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLS 282 (487)
Q Consensus 206 Ea~~l~~~--~g~i~~~~i~~v~~~~~~~~-~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~g 282 (487)
|++.++++ .| +|++++.++ |+.+. ++|++++...+++..++.+ ..++.+.++ +.+.+|+++.|.+.|
T Consensus 189 Ea~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~~---~~~~~~~kd---~~~~~~~~~~A~~~~ 258 (301)
T PRK09599 189 EGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPKL---DEISGYVED---SGEGRWTVEEAIDLA 258 (301)
T ss_pred HHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCCH---HHHHHHHHh---hCcHHHHHHHHHHcC
Confidence 67788888 88 999988777 57664 6899999998888543211 113334444 334579999999999
Q ss_pred CCchhHHHHHHHHHhhccc
Q 011394 283 VAAPTIASSLDARFLSGLK 301 (487)
Q Consensus 283 v~~P~~~~a~~~r~~s~~~ 301 (487)
+|+|+++++++.|+.+...
T Consensus 259 ~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 259 VPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred CCHHHHHHHHHHHHHhccC
Confidence 9999999988888877654
No 373
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.45 E-value=0.18 Score=53.19 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=67.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCcccc--CCHHHHHhhcCCCcEEEEec--
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGF--RDPESFVNSIQKPRVIIMLV-- 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~~--~s~~e~~~~l~~advIi~~v-- 81 (487)
++|.|+|.|..|.+.|+.|++.|+.|+++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spgi 77 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPGI 77 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCCC
Confidence 58999999999999999999999999999976542 33332210 0 12221 112233333 89998864
Q ss_pred CCC-hhHHHHH---------HHHh-hccc---CCCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 82 KAG-APVDETI---------KTLS-AYME---KGDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 82 p~~-~~v~~vl---------~~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
|+. ..+.... -+++ ..+. ...|-|-.|++...++.-+...+...|....
T Consensus 78 ~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~ 140 (445)
T PRK04308 78 SERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTV 140 (445)
T ss_pred CCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeE
Confidence 332 2222221 1122 2221 2346666677776666666777777776543
No 374
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.42 E-value=0.097 Score=50.29 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=57.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++....... -.. ..++..-+.+...
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 67 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA--------------GGK---AIGVAMDVTDEEA 67 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 3688887 799999999999999999999999988776655432100 000 2233333445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+-++||++...
T Consensus 68 ~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 68 INAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555555777776643
No 375
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.42 E-value=0.025 Score=56.44 Aligned_cols=75 Identities=32% Similarity=0.547 Sum_probs=57.3
Q ss_pred HHHHHHHhhcc-CcchhhhHhhhccccccccCCCCchhHHhhhhccCCCCchHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q 011394 221 ELQNVFTEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSG 299 (487)
Q Consensus 221 ~i~~v~~~~~~-~~~~s~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~kgtg~~~~~~a~~~gv~~P~~~~a~~~r~~s~ 299 (487)
++.++++.|+. +.++|++++...+.+..+ ++ .+.++.+.||. ++..|+++.|.+.|+|+|++.++++.|+.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAED-PK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhhC-CC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 46777788885 458899999888877643 22 24567777764 4556999999999999999999877888877
Q ss_pred cc
Q 011394 300 LK 301 (487)
Q Consensus 300 ~~ 301 (487)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 65
No 376
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.40 E-value=0.057 Score=54.01 Aligned_cols=81 Identities=12% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
|+||+||| .|..|..+.+.|.++.+ ++.....+..+ . + .+.++..++ +|++|+|+|++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~------------~---~~~~~~~~~---~DvvFlalp~~ 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D------------A---AARRELLNA---ADVAILCLPDD 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c------------c---cCchhhhcC---CCEEEECCCHH
Confidence 57999999 89999999999998864 33322222111 0 1 122333344 89999999987
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+...++. ..|..|||.|+-.
T Consensus 62 -~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 62 -AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred -HHHHHHHHHH---hCCCEEEECChhh
Confidence 3444444443 4689999999754
No 377
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.38 E-value=0.14 Score=54.05 Aligned_cols=115 Identities=14% Similarity=0.209 Sum_probs=68.0
Q ss_pred cEEEEcccHHHHH-HHHHHHHCCCcEEEEeCChHH-HHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEe--cCC
Q 011394 9 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIML--VKA 83 (487)
Q Consensus 9 kIgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~--vp~ 83 (487)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +.... ...+... ++|+||.+ +|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~---~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLD---DADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCC---CCCEEEECCCCCC
Confidence 4789999999998 999999999999999976542 23333222 22221 1222333 38988875 333
Q ss_pred Ch-hHHHHH---------HHHh-hccc-CCCEEEecCCCCchhHHHHHHHHHHcCC--eEEecC
Q 011394 84 GA-PVDETI---------KTLS-AYME-KGDCIIDGGNEWYENTERREKAMAELGL--LYLGMG 133 (487)
Q Consensus 84 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~--~~i~~p 133 (487)
.. .+.... -+++ ..+. ...+-|-.|++...++.-+...+...|. .++-.+
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 21 222221 1222 2222 2346666777776666666777777775 454333
No 378
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.35 E-value=0.19 Score=46.18 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=46.7
Q ss_pred cEEEEcccHHHHHHHH--HHHHC----CCcEEEEeCChHHHHHH---HHhhhhc-C-CCCccccCCHHHHHhhcCCCcEE
Q 011394 9 RIGLAGLAVMGQNLAL--NIAEK----GFPISVYNRTTSKVDET---VERAKKE-G-DLPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~--~L~~~----G~~V~v~dr~~~~~~~l---~~~~~~~-g-~~~~~~~~s~~e~~~~l~~advI 77 (487)
||+|||.|..-.+.-. -+... +-+|.++|+++++++.. .++..+. + ..++..+++.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 7999999998777432 23332 23899999999987643 2222111 0 2256778899999887 9999
Q ss_pred EEecCCC
Q 011394 78 IMLVKAG 84 (487)
Q Consensus 78 i~~vp~~ 84 (487)
|.++..+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998554
No 379
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.11 Score=52.51 Aligned_cols=93 Identities=14% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCCCCCCCcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+.....++|-|.|. |-+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++..
T Consensus 1 ~~~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~--------------~g~~---~~~~~~ 63 (330)
T PRK06139 1 MMGPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA--------------LGAE---VLVVPT 63 (330)
T ss_pred CCcCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEe
Confidence 454444456777775 8999999999999999999999999887766543211 0000 222223
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+..+++.+++.+.....+=+++|++...
T Consensus 64 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 64 DVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3455556777776665544444778877643
No 380
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.30 E-value=0.048 Score=54.99 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 41 (487)
.++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4589999999999999999999996 6999999975
No 381
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.19 Score=53.23 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
||.|||+|..|.+.|+.|.+.|++|.++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999997653
No 382
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.26 E-value=0.17 Score=52.86 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=73.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE--------Ee---CChHHHHHHHHhhhhcC--------CC-CccccCCHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKKEG--------DL-PLFGFRDPESF 67 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~l~~~~~~~g--------~~-~~~~~~s~~e~ 67 (487)
.+|+|=|+|++|...|+.|.+.|..|++ || .+.++++.+.+.....+ .+ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999998 88 67776544433211100 00 01111 23333
Q ss_pred HhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 68 VNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 68 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
... +||+.+-|--...-..+..+.+.. .+=++|+..+|. | .+.+..+.|.++|+.|+.
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~--~~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vP 365 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIK--NGVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAP 365 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHH--cCCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeC
Confidence 331 488888776544322223333321 134688888888 5 444566788999998874
No 383
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.26 E-value=0.22 Score=51.69 Aligned_cols=113 Identities=10% Similarity=0.103 Sum_probs=68.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHh--hcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVN--SIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 85 (487)
..|-|+|.|.+|..+++.|.+.|++|.+.|.++ .++..+.+.. -+....+-++..+ .+++|+.|+++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~ 314 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDA 314 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChH
Confidence 358899999999999999999999999998763 2332222211 1222223333333 3567999999888764
Q ss_pred hHHHHHHHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 86 PVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
.-..++... ..+.+ .++++-..+. +..+.++..|...+-.|
T Consensus 315 ~Nl~ivL~a-r~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 315 DNAFVVLAA-KEMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HHhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333232 33444 4566655432 23455566787776555
No 384
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.25 E-value=0.08 Score=53.78 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=33.8
Q ss_pred CCcEEEEcc-cHHHHHHHHHHHHC-CCcEEEEeCChHHHHHH
Q 011394 7 LTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDET 46 (487)
Q Consensus 7 ~~kIgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~l 46 (487)
||+|-|.|. |.+|+.++..|+++ |++|.+.||+.++...+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 578999995 99999999999986 79999999987655443
No 385
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.23 E-value=0.055 Score=54.63 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.5
Q ss_pred cEEEEcc-cHHHHHHHHHHHHCCC-------cEEEEeCChH
Q 011394 9 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 41 (487)
Q Consensus 9 kIgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 41 (487)
||+|||+ |.+|..+|..|+..+. ++.++|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999998654 5999999654
No 386
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=95.21 E-value=0.047 Score=52.78 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
.+|+|.|+| .|.+|..++..|++.||+|++..|++++...+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 367899999 59999999999999999999999998876543
No 387
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.20 E-value=0.15 Score=49.00 Aligned_cols=82 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|-|+| .|.+|..++..|++.|++|++.+|++++.+.+.+... .. ...+-.=+.+...
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------------DN---LYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----------------cc---eEEEEecCCCHHH
Confidence 4788888 6999999999999999999999999887665543210 01 2223223444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|....
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag 83 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAG 83 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666665554444567776654
No 388
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.18 E-value=0.066 Score=52.97 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++++.+++ +|+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 4799999 778999999999988 6789988543 2245566666 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ...+++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 654322 24578999999998654
No 389
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.15 E-value=0.32 Score=48.25 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHhhCCCCCCCcCCh
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDP 403 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~~~~~~~~~~ll~~~ 403 (487)
.+.++.+|.++|.+....+..++|++.+.++ +++|..++.++.+.+ ..+|+.++...+.+... +.. +
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~~-----~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TFK-----P 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CCC-----C
Confidence 3678899999999999999999999999875 459999999999876 45777776543332221 111 1
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 404 EFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 404 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
-|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 1221 1224456788889999999999999998877643
No 390
>PRK07877 hypothetical protein; Provisional
Probab=95.11 E-value=0.088 Score=58.54 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC--cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+| +|+..|..|++.|. +++++|.+.=....+..+.......+..-+...++.+..+ .+++-|.+++..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~ 184 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDG 184 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEecc
Confidence 3589999999 89999999999994 8999987643222222211000000011111222323222 266777777654
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-. .+.++++. ..-++|||++-.. ..-..+.+.+.++++.++.+...+|
T Consensus 185 i~-~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g 232 (722)
T PRK07877 185 LT-EDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRG 232 (722)
T ss_pred CC-HHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 22 33344443 3458999998764 3333345666778888887654444
No 391
>PRK14852 hypothetical protein; Provisional
Probab=95.07 E-value=0.11 Score=59.12 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=74.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+... ....+-.-+...++.+..+ .+++=|.+.+..
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC
Confidence 3589999999999999999999997 788888765433333332110 0000011122233333322 266667776554
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pvsgg 137 (487)
..++.++++ +..-++|||+......+. ..+.+.+.+.++.++.+.+.|-
T Consensus 411 -I~~en~~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 411 -VAAETIDAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred -CCHHHHHHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 223333333 345589999887643333 3445566788999998876553
No 392
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.07 E-value=0.43 Score=51.56 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=50.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh-----cCC---CCccc----cCCHHHHHhhcCCCc
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK-----EGD---LPLFG----FRDPESFVNSIQKPR 75 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~-----~g~---~~~~~----~~s~~e~~~~l~~ad 75 (487)
.|.|.| .|.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++.. ..+.+++.+.+..+|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 577777 59999999999999999999999999987766542110 000 01111 234445545556699
Q ss_pred EEEEecC
Q 011394 76 VIIMLVK 82 (487)
Q Consensus 76 vIi~~vp 82 (487)
+||.++.
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
No 393
>PRK06153 hypothetical protein; Provisional
Probab=95.06 E-value=0.14 Score=52.31 Aligned_cols=119 Identities=10% Similarity=0.113 Sum_probs=64.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhh-hh-cCCCCc--cccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-KK-EGDLPL--FGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~-~~-~g~~~~--~~~~s~~e~~~~l~~advIi~~vp 82 (487)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+.++. .. ....+- .-+...++....+. +++. +.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in-~~I~--~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMR-RGIV--PHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhC-CeEE--EEe
Confidence 589999999999999999999997 8889987632222222111 00 000000 01112222223221 3433 333
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVS 135 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvs 135 (487)
..- -.+.+. .+..-++|++|.-... .-..+.+.+.+.++.|+++++.
T Consensus 254 ~~I-~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 254 EYI-DEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred ecC-CHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 221 111222 2445689999876542 2223456667789999987654
No 394
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.05 E-value=0.17 Score=50.08 Aligned_cols=106 Identities=13% Similarity=0.021 Sum_probs=74.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHH---Hh---hCCCCC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDRIKKA---YD---RNADLA 397 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~~~~~---~~---~~~~~~ 397 (487)
.+.++.+|+++|.+.++.+..++|++.+.++ .++|..++.++.+.+. -+|+.++..... +. .+.+.
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~- 230 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNPVPGVMPQAPASNGY- 230 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCCCccccccccccCCC-
Confidence 3788999999999999999999999999875 3499999999998763 356654422110 00 00010
Q ss_pred CCcCChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011394 398 NLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDSY 443 (487)
Q Consensus 398 ~ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~~ 443 (487)
++-| .+.-....++.+...|.+.|+|+|....+...|...
T Consensus 231 ----~~~f--~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 231 ----QGGF--GTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred ----CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 1222 122334567889999999999999998888766543
No 395
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.01 E-value=0.29 Score=48.79 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHH-HH-HHHhhCCCCCCCcC
Q 011394 324 VDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAVFLDR-IK-KAYDRNADLANLLV 401 (487)
Q Consensus 324 ~~~~~~v~~~~~ai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iw~~Gcii~s~ll~~-~~-~~~~~~~~~~~ll~ 401 (487)
.+.++.+|.+.|-+..+.+...+|++.+.++. ++|...+.++.+.+. ..+..+.. .. .++..+.
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------Gld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~------- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL------GLSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGDL------- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcCc-ccChHHHccccchhccCCC-------
Confidence 37889999999999999999999999998853 499999999988763 33443332 21 1221111
Q ss_pred ChhHHHHHhhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011394 402 DPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSLAYFDS 442 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~aal~~~~~ 442 (487)
++.| .++-....++-+...|.+.|+|+|....+...|..
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1223 23334566788999999999999999988876654
No 396
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.00 E-value=0.028 Score=58.53 Aligned_cols=34 Identities=24% Similarity=0.645 Sum_probs=31.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
|.+|.|||.|.+|.+.|..|++.|++|+++|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
No 397
>PRK14851 hypothetical protein; Provisional
Probab=94.99 E-value=0.12 Score=57.21 Aligned_cols=125 Identities=13% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|+|||+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+.-.++.+.++ .+++-|.+.+..
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecC
Confidence 3589999999999999999999997 788888764333333322110 0000000111122222222 256666666544
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhH-HHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENT-ERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pvsg 136 (487)
-. .+.+.. .+..-++|||+.......+ ..+.+.+...++.++.+++.|
T Consensus 122 i~-~~n~~~---~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 122 IN-ADNMDA---FLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred CC-hHHHHH---HHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 21 222233 3445689999987542233 345566777899999877654
No 398
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.09 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++.+.+++ ||+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR---------------------SKNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 678999999999988 5788888643 2245566666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+..+. ...+++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 765332 24578999999998754
No 399
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.97 E-value=0.077 Score=51.70 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=58.0
Q ss_pred CcEEEEccc-HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++.|||-+ .+|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 479999966 479999999999999999998542 245555666 9999999976643
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++ .+.+.+|.+|||.+...
T Consensus 213 i~------~d~vk~gavVIDVGinr 231 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINR 231 (283)
T ss_pred cc------cccccCCCEEEecCCcc
Confidence 33 35678999999998764
No 400
>PRK06182 short chain dehydrogenase; Validated
Probab=94.95 E-value=0.2 Score=48.86 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++... . ..++..=+.+...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCCHHH
Confidence 4677888 59999999999999999999999998876543321 1 2333334445556
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 61 ~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 61 IKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCc
Confidence 666666665544444677776543
No 401
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.92 E-value=0.094 Score=53.58 Aligned_cols=97 Identities=12% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHh-hhhc--C---C--CCccc-cCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKKE--G---D--LPLFG-FRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~-~~~~--g---~--~~~~~-~~s~~e~~~~l~~ad 75 (487)
|+||+|+| .|.+|..+.+.|.++.. ++.++.++++...+.... .... + . ..+.. ..+++++ .+ +|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~---~D 78 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD---VD 78 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---CC
Confidence 47999998 99999999999998755 888876665443221110 0000 0 0 01111 1234443 44 99
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
+|+.++|.+ ....+.+.+. ..|..+||.|...
T Consensus 79 vVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 79 IVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred EEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 999999986 3344444332 4688899998753
No 402
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.19 Score=48.54 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=55.9
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+.++|-|+| .|.+|..++..|+++|++|++.+|+++..+++.+.... . . ..++..=+.+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-----------~---~~~~~~D~~~~ 70 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-----A-----------K---VTATVADVADP 70 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-----C-----------c---eEEEEccCCCH
Confidence 345788997 79999999999999999999999998766655432210 0 0 12222223333
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
..+..+++++.+.+.+-+.||++....
T Consensus 71 ~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 71 AQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 445555665555555557777766543
No 403
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.89 E-value=0.082 Score=53.81 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCC-CcEEEE-eCChHHHHHHHHhhhh-----cCC--CCccccCCHHHHHhhcCCCcEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKK-----EGD--LPLFGFRDPESFVNSIQKPRVI 77 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~l~~~~~~-----~g~--~~~~~~~s~~e~~~~l~~advI 77 (487)
+||+|+| .|.||..+++.|.++. ++|... +.+.+.-+.+.+.... ... ..+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 5899999 5999999999998876 577655 5543322222211100 000 00111111112223 49999
Q ss_pred EEecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 78 IMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 78 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|+|.+. ...+...+ ...|..|||.|...
T Consensus 78 f~a~p~~~-s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSEV-AEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHHH-HHHHHHHH---HHCCCEEEECChhh
Confidence 99999873 33343333 34688899998753
No 404
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.89 E-value=0.14 Score=53.09 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhh-hcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-KEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~-~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|..+|.+|+..|. +++++|.+.=....+.++.. .....+-.-+....+.+..+ .+++-+.+.+..
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~ 120 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFR 120 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEecc
Confidence 3589999999999999999999998 78899977543333332211 00000000111122222221 255556555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-..+. . ...+..-++|||++... ..-..+.+.+...++.|+.+.+.|-
T Consensus 121 i~~~~-~---~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 121 LDPSN-A---VELFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred CChhH-H---HHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 11111 2 22344568999987543 3333355666778888887766543
No 405
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.89 E-value=0.39 Score=50.60 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=67.7
Q ss_pred CCCCCCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH--HHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE
Q 011394 1 MVEGKQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII 78 (487)
Q Consensus 1 ~~~~~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi 78 (487)
||.-. .++|.|||+|..|.+.++.|++.|++|+++|..+.. .+.+. .+. .+.......+.++. .|+||
T Consensus 1 ~~~~~-~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~-----~~~~~~~~~~~~~~---~d~vv 70 (438)
T PRK03806 1 MADYQ-GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENV-----ERHTGSLNDEWLLA---ADLIV 70 (438)
T ss_pred CcccC-CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCC-----EEEeCCCCHHHhcC---CCEEE
Confidence 55532 357999999999999999999999999999975432 22332 121 11111122233343 78766
Q ss_pred Eec--CCC-hhHHHHH---------HHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEE
Q 011394 79 MLV--KAG-APVDETI---------KTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYL 130 (487)
Q Consensus 79 ~~v--p~~-~~v~~vl---------~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i 130 (487)
.+- |.+ ..+.... .++...+.+ ..+-|-.|++...++.-+...|...|..+.
T Consensus 71 ~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 71 ASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred ECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 643 222 1222211 123222222 245566777776666666777777776543
No 406
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.088 Score=52.12 Aligned_cols=74 Identities=15% Similarity=0.280 Sum_probs=56.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHC----CCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.++ +..|+++... +.++++..++ ||+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~---------------------T~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR---------------------TDDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 4799999 677999999999987 7899988542 2245566666 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
-+.-+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 654322 24578999999998654
No 407
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.85 E-value=0.11 Score=51.79 Aligned_cols=80 Identities=13% Similarity=0.249 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.||+|+| .|+.|.-|.+.|..+.+ ++....-+.. . . ..+.+++.++ +|++|+|+|++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~--------~-~~~~~~~~~~---~D~vFlalp~~- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------K--------D-AAERAKLLNA---ADVAILCLPDD- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------c--------C-cCCHhHhhcC---CCEEEECCCHH-
Confidence 4799998 89999999999998853 3332221111 0 0 1234455555 99999999987
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
...+....+ ...|..|||.|+..
T Consensus 61 ~s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 61 AAREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---HhCCCEEEECChHH
Confidence 344444433 24688999999753
No 408
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.84 E-value=0.15 Score=51.41 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=30.5
Q ss_pred EEEEcccHHHHHHHHHHHHC-CCcEE-EEeCChHHHHHHHHh
Q 011394 10 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVER 49 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~ 49 (487)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....++..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~ 42 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKE 42 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHH
Confidence 69999999999999998754 45666 457777766666553
No 409
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.83 E-value=0.2 Score=47.55 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi--~~vp~~ 84 (487)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+...... . . +++.+ .=+.+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~--~---~~~~~~~~D~~~~ 66 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA--------------A--G---GEARVLVFDVSDE 66 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh--------------c--C---CceEEEEccCCCH
Confidence 5788997 69999999999999999999999998876654432210 0 0 22222 223344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..+..+++++...+.+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 67 AAVRALIEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 45566666655544445677776643
No 410
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.82 E-value=0.18 Score=48.75 Aligned_cols=117 Identities=15% Similarity=0.295 Sum_probs=69.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE--------EeCChHHHHHHHHhhhhcCCCCccccC----------CHH-HHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YNRTTSKVDETVERAKKEGDLPLFGFR----------DPE-SFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v--------~dr~~~~~~~l~~~~~~~g~~~~~~~~----------s~~-e~~ 68 (487)
+++.|-|.|++|...|+.|.+.|..|.+ ||.+.-.++++.+.....+. ++.... +.+ ++.
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~il 111 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEIL 111 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEeccccccc
Confidence 5899999999999999999999987765 46665555555542221110 011111 221 444
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEec
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGM 132 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 132 (487)
.. +||+++-|--...-..+.+.. .+++ -++|+...|.... .+-.+.|.++|+.++.-
T Consensus 112 ~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 112 SV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp TS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred cc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 32 499999996444222222220 3332 3688888887543 33345889999988854
No 411
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.79 E-value=0.35 Score=51.29 Aligned_cols=121 Identities=19% Similarity=0.148 Sum_probs=67.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.+++....+.+.... .... ....+.... +|+||.+ +|...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSK----NAIA-ALSDSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcC----ceec-cCChhHhhC---CCEEEECCCCCCCC
Confidence 58999999999999999998 599999999664433222211000 0111 112223333 8888775 33322
Q ss_pred h-HHHHH---------HHHh-hcccC-CCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 86 P-VDETI---------KTLS-AYMEK-GDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 86 ~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
. +.... -+++ ..... ..|-|-.|++...++.-+...+...|..+.-.+..|-
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~ 141 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV 141 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCH
Confidence 1 22111 1222 22222 2455666777766666667777777766554444443
No 412
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.39 Score=44.01 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|++-|+|..-||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888886668888999999999999999999887666543
No 413
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.74 E-value=0.63 Score=42.70 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=78.0
Q ss_pred cEEEEc--ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccc-cCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 9 RIGLAG--LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFG-FRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 9 kIgiIG--lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+-=|| +|.++.-+| ++-..-+|+.+|++++.++...+....-+..++.. ..+..++..++.++|.||+--. .
T Consensus 37 ~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~ 112 (187)
T COG2242 37 RLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--G 112 (187)
T ss_pred EEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--C
Confidence 344455 556666666 44455699999999998776554333211012222 2234455555667999999865 3
Q ss_pred hHHHHHHHHhhcccCC-CEEEecCCCCchhHHHHHHHHHHcCC-eEEecCCCCC
Q 011394 86 PVDETIKTLSAYMEKG-DCIIDGGNEWYENTERREKAMAELGL-LYLGMGVSGG 137 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~i~~pvsgg 137 (487)
.++.+++....++++| .+|++..|. ++.....+.+++.|+ ..+-..++-+
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 6899999888888775 577777765 344456677788887 5555555443
No 414
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.73 E-value=0.052 Score=55.19 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=55.1
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEE---EEeCChHHHHHHHHhhhhcCCCCccccC-CHHHHHhhcCCCcEEEEecCC
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKKEGDLPLFGFR-DPESFVNSIQKPRVIIMLVKA 83 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~l~~~~~~~g~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 83 (487)
||+||| .|..|..|.+.|.+++|++. ++.++...-+.+.-.+. .+...+ +.+++ +. +|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 689999 99999999999999888643 44444332222211111 112211 22333 43 9999999998
Q ss_pred ChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 84 GAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 84 ~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
. ...+....+ +..|..|||.|+.
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~ 94 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSA 94 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHH
Confidence 6 344444433 3468899999864
No 415
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.73 E-value=0.35 Score=51.47 Aligned_cols=114 Identities=12% Similarity=0.029 Sum_probs=65.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH-HH---HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec-
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KV---DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV- 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~---~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v- 81 (487)
.++|+|+|+|.-|.+.++.|.+.|.+|+++|.++. .. .++.+.+. ........+.... +|+||.+-
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~---~d~vV~Spg 78 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAAL------LVETEASAQRLAA---FDVVVKSPG 78 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCE------EEeCCCChHHccC---CCEEEECCC
Confidence 35899999999999999999999999999995432 22 23322110 1111122333343 89988863
Q ss_pred -CCChh-HHHHH---------HHH-hhc-cc-----CCCEEEecCCCCchhHHHHHHHHHHcCCeE
Q 011394 82 -KAGAP-VDETI---------KTL-SAY-ME-----KGDCIIDGGNEWYENTERREKAMAELGLLY 129 (487)
Q Consensus 82 -p~~~~-v~~vl---------~~l-~~~-l~-----~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 129 (487)
|.... +.... -++ ... .. ...|-|-.|++...++.-+...+...|...
T Consensus 79 I~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~ 144 (468)
T PRK04690 79 ISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRT 144 (468)
T ss_pred CCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 43322 22211 112 111 21 134666667777666666677777766433
No 416
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.22 Score=50.50 Aligned_cols=84 Identities=12% Similarity=0.163 Sum_probs=56.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEE--EEecCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVI--IMLVKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advI--i~~vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+..... . +++. ..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 4577776 699999999999999999999999988877655432110 0 2222 2223445
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.+++.+++.+...+.+=+++|+....
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 56667766666655555788876643
No 417
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.71 E-value=0.21 Score=47.29 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|+| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 4688887 6999999999999999999999999887766544
No 418
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.69 E-value=0.28 Score=47.54 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=53.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+... .. ..++..=+.+...
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dl~~~~~ 66 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----------------ER---ARFIATDITDDAA 66 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Ce---eEEEEecCCCHHH
Confidence 4677777 5999999999999999999999999887666543210 00 2222223344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 67 ~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 67 IERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred HHHHHHHHHHHhCCCCEEEECCC
Confidence 66666665554444466776654
No 419
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.69 E-value=0.53 Score=44.36 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=52.0
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh-HHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|.|||.|..|..=++.|++.|-+|+++..+. +.+..+.+.+... -+...-.++++. .+++||.++.+. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 479999999999999999999999999998776 5555555544210 011122333333 388999999876 4
Q ss_pred HHHHH
Q 011394 87 VDETI 91 (487)
Q Consensus 87 v~~vl 91 (487)
+..-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 44444
No 420
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.67 E-value=0.25 Score=52.51 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=75.2
Q ss_pred CCcEEEEcc----------cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhh---------------cC-CCCccc
Q 011394 7 LTRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKK---------------EG-DLPLFG 60 (487)
Q Consensus 7 ~~kIgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~---------------~g-~~~~~~ 60 (487)
-++|+|+|+ ..-...++..|.+.|.+|.+||+--+..+. .+.... .. ..++..
T Consensus 324 ~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (473)
T PLN02353 324 GKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQI-QRDLSMNKFDWDHPRHLQPMSPTAVKQVSV 402 (473)
T ss_pred CCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHH-HHHhhcccccccccccccccccccccceee
Confidence 358999998 457789999999999999999986433211 111000 00 001345
Q ss_pred cCCHHHHHhhcCCCcEEEEecCCChhHHHH-HHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 61 FRDPESFVNSIQKPRVIIMLVKAGAPVDET-IKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 61 ~~s~~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.++.++++. +|+|++++..+ ..+.. ++.+.+.+.+..+|+|+-+.... +.+.+.|+.|++.+
T Consensus 403 ~~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 403 VWDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred eCCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 6677777776 99999999876 34432 34555555555589999888742 22335588887654
No 421
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.65 E-value=0.26 Score=47.05 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=35.9
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 49 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~ 49 (487)
.+|-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 4566776 89999999999999999999999999887776543
No 422
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.62 E-value=0.24 Score=48.54 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~~ 64 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFDA 64 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHHH
Confidence 4687887 6999999999999999999999999887665543210 00 2222233444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...++++.....+=++||++...
T Consensus 65 ~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 65 IDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCc
Confidence 566666655544444677776544
No 423
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.59 E-value=0.26 Score=56.22 Aligned_cols=111 Identities=13% Similarity=0.121 Sum_probs=66.2
Q ss_pred CCcEEEEcccHHHHHH-HHHHHHCCCcEEEEeCChH-HHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEEe--c
Q 011394 7 LTRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIML--V 81 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~~--v 81 (487)
+++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+++.+.+ +... ....+... .+|+||.+ +
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~---~~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVP---EDAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcC---CCCEEEECCCc
Confidence 3469999999999997 9999999999999997643 334443322 2221 11223333 38988875 3
Q ss_pred CCCh-hHHHHH---------HHHhhcccC--CCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 82 KAGA-PVDETI---------KTLSAYMEK--GDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 82 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
|... .+.... -+++..+.+ ..|-|-.|++...++.-+...+...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3322 222211 122222222 246666777776666666777777664
No 424
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.58 E-value=0.4 Score=50.16 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=49.7
Q ss_pred CcEEEEcccHHHHH-HHHHHHHC-----CCcEEEEeCC-hHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQN-LALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~-lA~~L~~~-----G~~V~v~dr~-~~~~~~l~---~~~~~~-g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|||+|||.|..-.+ +...|+.. +-+|.++|.+ +++++... ++.... + ..++..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 68999999997443 44555542 3589999999 78864422 221111 0 1246778889988877 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||++.-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999987443
No 425
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.58 E-value=0.28 Score=47.81 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=53.2
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|+++-|.| .|-+|..+++.|++.|++|++.+|++++.+.+.+. . .+.+..=+.+..
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~ 57 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGA 57 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHH
Confidence 34566776 68999999999999999999999998766544321 0 222222334444
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.+...+=+++|++...
T Consensus 58 ~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 58 ALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5666666665544444777777653
No 426
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=94.57 E-value=0.18 Score=48.52 Aligned_cols=117 Identities=9% Similarity=0.107 Sum_probs=79.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCC---CcEEEEeCChHHHHHHHHhhhhcC-C--CCccccCCHHHHHhhcCCCcEEEEec
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKKEG-D--LPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~l~~~~~~~g-~--~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
.-..++|.|......-....+.- .+|.+|+|+++..+++++...+.- . ..+..+.+.++++.. +|+|+.|+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~at 215 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGAT 215 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecc
Confidence 34788999999988776655442 389999999999988887443210 0 024567788888887 99999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
+.... .+ ....+.||+.| |.-.+.-+...+....+...+.-|+|.-
T Consensus 216 lsteP---il--fgewlkpgthI-dlVGsf~p~mhEcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 216 LSTEP---IL--FGEWLKPGTHI-DLVGSFKPVMHECDDELIQSACVFVDSR 261 (333)
T ss_pred ccCCc---ee--eeeeecCCceE-eeeccCCchHHHHhHHHhhhheEEEecc
Confidence 86533 22 13456777554 5444444566677677767777888863
No 427
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.56 E-value=0.29 Score=51.42 Aligned_cols=73 Identities=12% Similarity=0.223 Sum_probs=50.1
Q ss_pred CcEEEEcccHHHHH--HHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhh-cC-CCCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQN--LALNIAEK-----GFPISVYNRTTSKVDETV---ERAKK-EG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~--lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~-~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
|||+|||.|.. .. +...|+.. +-+|.++|.++++++... ++... .+ ..++..+++.+++++. +|
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---AD 76 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---AD 76 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CC
Confidence 69999999985 33 44445443 358999999998865532 22111 11 2257778899998887 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+||.++-.+
T Consensus 77 fVi~~irvG 85 (437)
T cd05298 77 FVFAQIRVG 85 (437)
T ss_pred EEEEEeeeC
Confidence 999998655
No 428
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.54 E-value=0.32 Score=46.57 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=57.8
Q ss_pred EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHHHHHHHhhcccCCCEEEecCCC--
Q 011394 33 ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNE-- 110 (487)
Q Consensus 33 V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 110 (487)
|.+||+++++.+.+.++. ++..+++++++++. ++|+|++|.|+... .+.... .+..|+-|+..+.+
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~H-~e~a~~---aL~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEAV-KEYAEK---ILKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHHH-HHHHHH---HHHCCCCEEEECCccc
Confidence 458999999998888754 24578899998752 49999999998743 333333 34456555445554
Q ss_pred -CchhHHHHHHHHHHcCCeEE
Q 011394 111 -WYENTERREKAMAELGLLYL 130 (487)
Q Consensus 111 -~~~~~~~~~~~l~~~g~~~i 130 (487)
.....+++.+..++.|..+.
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVY 93 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEE
Confidence 23445666666777776554
No 429
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.51 E-value=0.32 Score=47.46 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=58.8
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
++++-|-| .+-+|..+|+.|+++||+|++..|+.++++++.++.... .. ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--------~~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--------TG----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--------hC----ce----EEEEECcCCChh
Confidence 44566667 789999999999999999999999999999988765421 00 01 334433345555
Q ss_pred hHHHHHHHHhhcccCCCEEEecC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~s 108 (487)
.+..+.+++.....+=+++|+..
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEECC
Confidence 66666666665433446666653
No 430
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.51 E-value=0.31 Score=46.67 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|+|+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-+....+.+..+ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 899998775333333222100 0000000111122222222 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
...+.+..+. ...-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~--~~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLL--GGDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHh--cCCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1112222222 12357999986544 333456677778889888764333
No 431
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.50 E-value=0.25 Score=48.38 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=34.3
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 35777775 99999999999999999999999988766544
No 432
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.4 Score=46.19 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=34.5
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+.+.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 56888885 99999999999999999999999987665544
No 433
>PRK09186 flagellin modification protein A; Provisional
Probab=94.48 E-value=0.24 Score=47.51 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=57.8
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+++ ++|-|.| .|.+|..+|..|++.|++|.+.+|++++.+++.+..... .. . .. ..++..
T Consensus 1 ~~~~---k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-------~~--~---~~---~~~~~~ 62 (256)
T PRK09186 1 MLKG---KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKE-------FK--S---KK---LSLVEL 62 (256)
T ss_pred CCCC---CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhh-------cC--C---Cc---eeEEEe
Confidence 5544 3677887 589999999999999999999999988876655432100 00 0 00 122233
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGG 108 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~s 108 (487)
=+.+..++..+++++.....+=++||++.
T Consensus 63 Dl~d~~~~~~~~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 63 DITDQESLEEFLSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred cCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 34455566677766655544457777765
No 434
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.48 E-value=0.38 Score=50.40 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=50.6
Q ss_pred CcEEEEcccHH-HHHHHHHHHHC-----CCcEEEEeCChHHHHHHH---Hhhhhc-C-CCCccccCCHHHHHhhcCCCcE
Q 011394 8 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKKE-G-DLPLFGFRDPESFVNSIQKPRV 76 (487)
Q Consensus 8 ~kIgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~l~---~~~~~~-g-~~~~~~~~s~~e~~~~l~~adv 76 (487)
|||+|||.|.. .-.+...|+.. +-+|.++|.++++.+... ++.... + ..++..+++.+++.+. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 68999999984 22355555543 358999999998865432 221111 1 2257778899998887 999
Q ss_pred EEEecCCC
Q 011394 77 IIMLVKAG 84 (487)
Q Consensus 77 Ii~~vp~~ 84 (487)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998654
No 435
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.34 Score=46.80 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
|+++-|+| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .. ..++..=+.+..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~ 61 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA----------------GN---AWTGALDVTDRA 61 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHH
Confidence 35688887 79999999999999999999999999887776543210 01 233333344445
Q ss_pred hHHHHHHHHhhc-ccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAY-MEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~-l~~g~iiId~st~ 110 (487)
.+..+++.+... ..+=++||++...
T Consensus 62 ~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 62 AWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 556666555442 2233677766543
No 436
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.44 E-value=0.35 Score=46.52 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=54.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|+| .|.+|..++..|++.|++|++.+|++++.+.+.+.... .. ...+-.-+.+...
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 63 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD----------------AR---FVPVACDLTDAAS 63 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----------------Cc---eEEEEecCCCHHH
Confidence 3577777 48999999999999999999999998877665542210 01 2233333444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+...++++.....+=+.||++...
T Consensus 64 ~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 64 LAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555555444444677776654
No 437
>PLN00016 RNA-binding protein; Provisional
Probab=94.38 E-value=0.29 Score=50.45 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCCCcEEEE----c-ccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 5 KQLTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 5 ~~~~kIgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
.++++|.|+ | .|.+|..++..|.+.||+|++.+|++..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 345789999 6 6999999999999999999999998765
No 438
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.37 E-value=0.29 Score=46.85 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=55.9
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.|. |.+|..+++.|+++|++|++.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 46888885 99999999999999999999999987665544322100 000 1222223344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 666666665555445788887664
No 439
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.33 E-value=0.13 Score=50.58 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
+++.||| ...+|.+++..|.+ ++.+|++++.+.. ++.+.+++ +|+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~---------------------~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP---------------------DLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 4799999 67889999999998 6789998875422 35555666 999999998
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+.-+. ...+++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 764322 13468999999998543
No 440
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.33 E-value=0.2 Score=49.49 Aligned_cols=119 Identities=11% Similarity=0.170 Sum_probs=68.6
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|+|+|-+|..+|++|+.+|. +|+++|.+.-....+.++---. ...+-.-+....+.++++ .+++-+......
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL-Np~V~V~~~~~~- 97 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL-NPYVPVTVSTGP- 97 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH-CCCCEEEEEecc-
Confidence 589999999999999999999997 7999998754444333210000 000000011112222222 155555555432
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
...+ .+.+-++||++.. .+.....+.+.+.+.++.|+.+...|
T Consensus 98 ~~~~-------~l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 LTTD-------ELLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred CCHH-------HHhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1111 1234468888754 44555566777888899998876543
No 441
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.33 E-value=0.062 Score=54.41 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=55.6
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCC---cEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
..++||||| .|..|..|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. ++++|++|+++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 346899999 59999999999998544 55544322211111110010 12222 344432 12389999999
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|++ ....+...+. ..|..|||.|...
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 986 3444444332 4689999999654
No 442
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.29 E-value=0.26 Score=47.67 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=55.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
|+|-|.| .|.+|..+|+.|++.|++|.+.+|++++.+++.++... . .. ...+-.=+.+...
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--------------~-~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE--------------Y-GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------c-CC---ceEEEcCCCCHHH
Confidence 4788887 68899999999999999999999998877665443210 0 00 2222223444556
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++++.....+=+++|+...
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 67777666655545567777654
No 443
>PRK05868 hypothetical protein; Validated
Probab=94.29 E-value=0.051 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=33.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 67899999999999999999999999999998865
No 444
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.28 E-value=0.25 Score=50.49 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=58.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhhcCCCCccccC---CHHHHHhhc---CCCcEEEEec
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKKEGDLPLFGFR---DPESFVNSI---QKPRVIIMLV 81 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~---s~~e~~~~l---~~advIi~~v 81 (487)
++.|+|+|.+|...++.+...|. +|++.|+++++++.+.+.+... ..... ...+....+ ..+|++|.|+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 69999999999998888888885 7888899999998776644321 11111 111111111 1378888887
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.... .+++....++++-.|+..+...
T Consensus 247 G~~~----~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 247 GSPP----ALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCHH----HHHHHHHHhcCCCEEEEEeccC
Confidence 6443 3334444555655555555443
No 445
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.27 E-value=0.4 Score=46.92 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHhhhhc-CCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKKE-GDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~-g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|+.+|.+|++.| -+++++|.+.-....+..+.... ...+-.-+.-..+-...+ .+++-+.+++..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~ 108 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDF 108 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEecc
Confidence 358999999999999999999999 48999997754333332211000 000000011112222221 155555555432
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
- ..+....+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.
T Consensus 109 i-~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 109 I-TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred c-ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1 1122222321 2457999987543 334456677788888888663
No 446
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.27 E-value=0.15 Score=50.49 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH----CCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp 82 (487)
++|.||| ...+|.++|..|.+ .+.+|+++..+.. ++++.++. ||+||.+++
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~---------------------~l~~~~~~---ADIvI~Avg 215 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK---------------------DIPSYTRQ---ADILIAAIG 215 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 4799999 67789999999987 6889998876532 34555665 999999997
Q ss_pred CChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 83 AGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 83 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
.+.- +. ...+++|.+|||.+...
T Consensus 216 ~~~l----i~--~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 216 KARF----IT--ADMVKPGAVVIDVGINR 238 (295)
T ss_pred ccCc----cC--HHHcCCCCEEEEeeccc
Confidence 6532 21 23458999999998653
No 447
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.25 E-value=0.38 Score=46.29 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=53.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|+++|++|.+.+|+.++.+++.+... .. ...+-.=+.+...
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----------------PA---AIAVSLDVTRQDS 66 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHHH
Confidence 3577777 6999999999999999999999999887766543211 00 1122222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag 89 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAA 89 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666665554445567777654
No 448
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.25 E-value=0.29 Score=47.25 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCCcEEEEcccHHHHHHHHHHHHCC-----------CcEEEEeCCh
Q 011394 6 QLTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 40 (487)
Q Consensus 6 ~~~kIgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 40 (487)
...+|.|||+|-.|+.++.+|++.| .+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3468999999999999999999874 2889998764
No 449
>PRK08017 oxidoreductase; Provisional
Probab=94.24 E-value=0.31 Score=46.75 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred CcEEEEcc-cHHHHHHHHHHHHCCCcEEEEeCChHHHHHH
Q 011394 8 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 46 (487)
Q Consensus 8 ~kIgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l 46 (487)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 36889997 9999999999999999999999998876544
No 450
>PRK08643 acetoin reductase; Validated
Probab=94.22 E-value=0.28 Score=47.17 Aligned_cols=85 Identities=11% Similarity=0.157 Sum_probs=54.2
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhH
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPV 87 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 87 (487)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+++...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 455555 88999999999999999999999998876665443210 0000 11222224445566
Q ss_pred HHHHHHHhhcccCCCEEEecCCC
Q 011394 88 DETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 88 ~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66676666554455777777654
No 451
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.20 E-value=0.31 Score=50.62 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCcEEEEcccHHHHHHH-HHHHHC-----CCcEEEEeCChHHHHHH---HHhhh-hcC-CCCccccCCHHHHHhhcCCCc
Q 011394 7 LTRIGLAGLAVMGQNLA-LNIAEK-----GFPISVYNRTTSKVDET---VERAK-KEG-DLPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA-~~L~~~-----G~~V~v~dr~~~~~~~l---~~~~~-~~g-~~~~~~~~s~~e~~~~l~~ad 75 (487)
+.||+|||.|+.+.+.- ..+... +.++.++|.++++.+.. .++.. ..| ..++..++|.+++.+. +|
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g---Ad 79 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG---AD 79 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---CC
Confidence 46899999999987742 223322 45899999999886632 11111 110 1256778899999887 99
Q ss_pred EEEEecCCC
Q 011394 76 VIIMLVKAG 84 (487)
Q Consensus 76 vIi~~vp~~ 84 (487)
+|+.++-.+
T Consensus 80 fVi~~~rvG 88 (442)
T COG1486 80 FVITQIRVG 88 (442)
T ss_pred EEEEEEeeC
Confidence 999998543
No 452
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.17 E-value=0.47 Score=45.89 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+... .. ...+..=+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 3566776 6889999999999999999999999887766543211 01 2223233344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+++|+....
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544455678777654
No 453
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.15 E-value=0.2 Score=51.47 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=69.7
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+|.|||+|-+|..++.+|+..|. +++++|.+.=....+.++... ....+-.-+....+.++.+ .+++-+...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 589999999999999999999997 999999875433333322100 0000001111222222222 1455555554321
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
. .+.+. ..+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 121 ~-~~~~~---~~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 T-AENAV---ELLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred C-HHHHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1 11222 2344568999998763 333334556677788888776654
No 454
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.12 E-value=0.47 Score=45.80 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=58.6
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
|+..-..+++-|.| .|.+|..+++.|++.|++|++.+|++++.+++.++... . ... ....++..
T Consensus 1 ~~~~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~--------~------~~~-~~~~~~~~ 65 (260)
T PRK07063 1 MMNRLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR--------D------VAG-ARVLAVPA 65 (260)
T ss_pred CCcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------c------cCC-ceEEEEEc
Confidence 44333334566666 78999999999999999999999998877766543311 0 000 00122222
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
=+.+...++.+++++.....+=+++|++...
T Consensus 66 Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 66 DVTDAASVAAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 3444455666666666555455677776543
No 455
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.09 E-value=0.06 Score=56.07 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.8
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999754
No 456
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.08 E-value=0.44 Score=45.17 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.4
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4788887 5889999999999999999999999988766543
No 457
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.06 E-value=0.085 Score=53.18 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=33.7
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV 43 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 43 (487)
|++|||||-|-.|..|+..-.+-|++|.+.|.+++.-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~P 37 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAP 37 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCc
Confidence 4689999999999999999999999999999887653
No 458
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.04 E-value=0.34 Score=46.61 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=55.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++++|+++..+++.+.... .-.. ...+..-+.+...
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~ 74 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA--------------AGGA---AEALAFDIADEEA 74 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEEccCCCHHH
Confidence 4677776 69999999999999999999999998776655443211 0000 2233333445555
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+..+++++.....+=+.+|.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666665544444566666543
No 459
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.32 Score=48.29 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=56.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..+|..|++.|++|.+.+|++++.+++.+.... .... ..++-.-+.+...
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--------------~~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--------------AGGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4577777 59999999999999999999999998887766543211 0000 2222223344455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555455777776543
No 460
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.02 E-value=0.27 Score=47.43 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=55.8
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|-+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 4677776 8999999999999999999999999887665543211 00 0 1 2333333444455
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.++++.....+-+++|+....
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665544444778776643
No 461
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.97 E-value=0.084 Score=40.21 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 12 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 12 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 462
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.96 E-value=0.23 Score=48.67 Aligned_cols=102 Identities=12% Similarity=0.168 Sum_probs=52.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHHHHHHHHhhhhc-C-CCCccc-cCCHHHHHhhcCCCcEEEEecC
Q 011394 8 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKKE-G-DLPLFG-FRDPESFVNSIQKPRVIIMLVK 82 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~-g-~~~~~~-~~s~~e~~~~l~~advIi~~vp 82 (487)
.||.|||.|.+-...-.-.... |..|..+|++++..+...+..... + ..++.. +.+..++..++...|+|+++.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999976654433333 457889999999765543322100 0 002222 2334344444555899999865
Q ss_pred CC---hhHHHHHHHHhhcccCCCEEEecCC
Q 011394 83 AG---APVDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 83 ~~---~~v~~vl~~l~~~l~~g~iiId~st 109 (487)
-+ ..-..+++.+...+++|..|+--+.
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 43 2456788999999999998887654
No 463
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.95 E-value=0.13 Score=52.28 Aligned_cols=89 Identities=12% Similarity=0.247 Sum_probs=55.3
Q ss_pred CcEEEEc-ccHHHHHHHHHHHH-CCCc---EEEEeCC--hHHHHHHHHhhhhcCCCCcccc-CCHHHHHhhcCCCcEEEE
Q 011394 8 TRIGLAG-LAVMGQNLALNIAE-KGFP---ISVYNRT--TSKVDETVERAKKEGDLPLFGF-RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~l~~~~~~~g~~~~~~~-~s~~e~~~~l~~advIi~ 79 (487)
+|||||| .|..|..|.+.|.+ ..++ +..+... ..+.-.+.. . .+... .+++++ .. .|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~--~-----~l~v~~~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG--R-----EIIIQEAKINSF-EG---VDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC--c-----ceEEEeCCHHHh-cC---CCEEEE
Confidence 5899999 59999999999995 5666 5444322 222111110 0 11211 234444 44 999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
++|.+ ....+...+ ...|..|||.|+..
T Consensus 75 a~~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 99986 444444433 34789999999754
No 464
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.95 E-value=0.34 Score=46.64 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ...+..=+.+...
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~D~~~~~~ 73 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG--------------QGLS---AHALAFDVTDHDA 73 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCce---EEEEEccCCCHHH
Confidence 4688887 69999999999999999999999998876654432210 0000 2222222344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++++.....+=+.||+....
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 666666655544455677776543
No 465
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.95 E-value=0.15 Score=50.95 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCc---EEEE--eCChHHH-HHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFP---ISVY--NRTTSKV-DETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~---V~v~--dr~~~~~-~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~ 79 (487)
+++|||+| .|.+|+.|...|.+..+. +.++ .|+..+. -++... .+..-.+..+... +++.|++|.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~-------~~~v~~~~~~~~~-~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK-------SIGVPEDAADEFV-FSDVDIVFF 72 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc-------cccCccccccccc-cccCCEEEE
Confidence 46899997 899999999999997553 3344 3333322 222211 1122221111111 235999999
Q ss_pred ecCCChhHHHHHHHHhhcccCCCEEEecCCCC
Q 011394 80 LVKAGAPVDETIKTLSAYMEKGDCIIDGGNEW 111 (487)
Q Consensus 80 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 111 (487)
|.+.. ..+.+...+. ..|.+|||.|+..
T Consensus 73 ~ag~~-~s~~~~p~~~---~~G~~VIdnsSa~ 100 (334)
T COG0136 73 AAGGS-VSKEVEPKAA---EAGCVVIDNSSAF 100 (334)
T ss_pred eCchH-HHHHHHHHHH---HcCCEEEeCCccc
Confidence 99865 3344444443 4689999988754
No 466
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.94 E-value=0.53 Score=44.71 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCCh
Q 011394 7 LTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGA 85 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 85 (487)
.+++-|.| .|.+|..++..|+++|+.|.+.+|++++.+++..... .. ..++-.=+.+..
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~ 65 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG-----------------ER---VKIFPANLSDRD 65 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----------------Cc---eEEEEccCCCHH
Confidence 35788887 7999999999999999999999999887765543210 01 222222234445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++++.+...+=+.||++...
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 66 EVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5666666666655555777777654
No 467
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.93 E-value=0.51 Score=46.20 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEccc---HHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE-EecCCCh
Q 011394 10 IGLAGLA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII-MLVKAGA 85 (487)
Q Consensus 10 IgiIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi-~~vp~~~ 85 (487)
+-|.|.+ -+|..+|+.|++.|++|.+.+|+.+..+.+.+.. +.+. ..+.+ .=+.+..
T Consensus 10 ~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~------------------~~~g-~~~~~~~Dv~d~~ 70 (271)
T PRK06505 10 GLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLA------------------ESLG-SDFVLPCDVEDIA 70 (271)
T ss_pred EEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHH------------------HhcC-CceEEeCCCCCHH
Confidence 4455876 6999999999999999999998854333222110 0000 11111 1133445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
+++.+++.+.....+=+++|+....
T Consensus 71 ~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 71 SVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcc
Confidence 6777777766555455677776543
No 468
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.93 E-value=0.54 Score=45.69 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=36.3
Q ss_pred CCCCCCCCcEE-EEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 1 MVEGKQLTRIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 1 ~~~~~~~~kIg-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|++-.-..|+. |.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 ~~~~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKARE 50 (263)
T ss_pred CCccCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45433223444 455 5789999999999999999999999888766554
No 469
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.91 E-value=0.099 Score=40.97 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=31.1
Q ss_pred cEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
||.|||.|..|.-+|..|++.|.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999987653
No 470
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.91 E-value=0.23 Score=48.64 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=64.9
Q ss_pred EEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChhHHH
Q 011394 10 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDE 89 (487)
Q Consensus 10 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~ 89 (487)
+.|.|.|.+|..-|+.|...|..|++...+|=.+-+.+-++ .+ ..+++|+++. .|+++.+.-.. +-
T Consensus 217 ~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG-------~~-V~tm~ea~~e---~difVTtTGc~---di 282 (434)
T KOG1370|consen 217 AVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEG-------YE-VTTLEEAIRE---VDIFVTTTGCK---DI 282 (434)
T ss_pred EEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhc-------cE-eeeHHHhhhc---CCEEEEccCCc---ch
Confidence 44559999999999999999999999999986654444333 22 5689999987 89998887543 33
Q ss_pred HHHHHhhcccCCCEEEecCCC
Q 011394 90 TIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 90 vl~~l~~~l~~g~iiId~st~ 110 (487)
+..+-...++.+.||.+.+..
T Consensus 283 i~~~H~~~mk~d~IvCN~Ghf 303 (434)
T KOG1370|consen 283 ITGEHFDQMKNDAIVCNIGHF 303 (434)
T ss_pred hhHHHHHhCcCCcEEeccccc
Confidence 445556667788888877654
No 471
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.90 E-value=0.33 Score=49.84 Aligned_cols=114 Identities=16% Similarity=0.293 Sum_probs=66.1
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH--------HHHHHHHhhhhcC---C-CCccccCCHHHHHhhcCCCc
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--------KVDETVERAKKEG---D-LPLFGFRDPESFVNSIQKPR 75 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~l~~~~~~~g---~-~~~~~~~s~~e~~~~l~~ad 75 (487)
++|+|=|.|++|...|+.|.+.|.+|++++-+.. ..+++.+.....+ . .+.+..+. +++... +||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 4899999999999999999999999998865544 1111111000000 0 01222222 444332 388
Q ss_pred EEEEecCCChhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 76 VIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 76 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+.+-|.-...-......+ +.. ++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 887765443222222233 322 3888888764 344556667789988774
No 472
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.90 E-value=0.37 Score=46.33 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=56.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+|+.|+++|++|++.+|+++..+.+.+..... -.. ...+..-+.+...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~~~ 68 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDEDQ 68 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCHHH
Confidence 4677776 699999999999999999999999987766554432110 000 2233333444456
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.+++.+.....+=+.||++...
T Consensus 69 ~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 69 CANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHcCCccEEEECCcc
Confidence 666666665555445677776643
No 473
>PRK07411 hypothetical protein; Validated
Probab=93.88 E-value=0.24 Score=51.38 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
..+|.|||+|-+|..++.+|+..|. +++++|.+.=....+.++... ....+-.-+...++.++.+ .+++-|.+.+..
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~ 116 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETR 116 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEecc
Confidence 3589999999999999999999997 888998774433333222100 0000001111222222221 255555655532
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGG 137 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsgg 137 (487)
-.-+. ....+..-++|||++-.. ..-..+.+.+...++.++.+.+.|-
T Consensus 117 ~~~~~----~~~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 117 LSSEN----ALDILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred cCHHh----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 11111 122345668999997654 2223344556677888887776654
No 474
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.86 E-value=0.26 Score=49.07 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=73.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh-
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP- 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 86 (487)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++.++ +|+|+..+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 479999999999999999999999999876543211 011 24566677887776 9999999885211
Q ss_pred --HHHH-------H-HHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecC
Q 011394 87 --VDET-------I-KTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMG 133 (487)
Q Consensus 87 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 133 (487)
++.. + .+.+..++++.+++ .+...|.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 1111 1 34667788998655 45555442 244668899888654
No 475
>PRK06753 hypothetical protein; Provisional
Probab=93.84 E-value=0.071 Score=54.65 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=32.2
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
|+|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998875
No 476
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.83 E-value=0.078 Score=54.83 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 41 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 41 (487)
.++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 35899999999999999999999999999999864
No 477
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.76 E-value=0.46 Score=49.76 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=67.5
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEE-Ee----------CChHHHHHHHHhhhh-cC---CC----CccccCCHHHHH
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISV-YN----------RTTSKVDETVERAKK-EG---DL----PLFGFRDPESFV 68 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v-~d----------r~~~~~~~l~~~~~~-~g---~~----~~~~~~s~~e~~ 68 (487)
++|.|.|.|++|...|+.|.+.|..|++ .| .+.+++..+.+.... .+ .+ +.. ..+.+++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~-~i~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCK-YVEGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCE-EcCCcccc
Confidence 5899999999999999999999999986 56 555444311110000 00 00 011 11334442
Q ss_pred hhcCCCcEEEEecCCChhHHHHHHHHhhcccCCC-EEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 69 NSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGD-CIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 69 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
. .+||+++-|.-...-..+....+.. +|. +|+..+|. |.+. +..+.+.++|+.++.
T Consensus 308 ~--~~cDIliPaAl~n~I~~~na~~l~a---~g~~~V~EgAN~-P~t~-eA~~~L~~rgI~~~P 364 (444)
T PRK14031 308 G--EKGDIALPSATQNELNGDDARQLVA---NGVIAVSEGANM-PSTP-EAIKVFQDAKILYAP 364 (444)
T ss_pred c--CCCcEEeecccccccCHHHHHHHHh---cCCeEEECCCCC-CCCH-HHHHHHHHCCcEEeC
Confidence 2 1489988876544222233333322 343 56666666 5544 456778889988874
No 478
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.68 E-value=0.73 Score=48.55 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCcEEEEcccHHHHHHHHHHHHC--CCcEEEEeCChHH--HHHHHHhhhhcCCCCccc--c-CCHHHHHhhcCCCcEEEE
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKKEGDLPLFG--F-RDPESFVNSIQKPRVIIM 79 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~l~~~~~~~g~~~~~~--~-~s~~e~~~~l~~advIi~ 79 (487)
+++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+.+.+ + +.. . .+.+. +.+ +|+||.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~~-~~~---~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLEW-LLE---ADLVVT 74 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChHH-hcc---CCEEEE
Confidence 46899999999999999999987 6899999976432 223321 2 222 1 23333 343 898877
Q ss_pred ec--CCCh-hHHHHH---------HHHhh-cccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 80 LV--KAGA-PVDETI---------KTLSA-YMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 80 ~v--p~~~-~v~~vl---------~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+- |... .+.... -+++. .+....|-|-.|++...++.-+...+...|..+.-.+..|
T Consensus 75 SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG 144 (438)
T PRK04663 75 NPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIG 144 (438)
T ss_pred CCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccC
Confidence 53 3322 222211 12322 2232345566667765556556677777776544333333
No 479
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.68 E-value=0.41 Score=46.43 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=55.7
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
+++-|.| .|-+|..+++.|++.|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 4677776 66899999999999999999999998877665543210 0000 1222233455556
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66667666655545577887654
No 480
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.68 E-value=0.46 Score=45.14 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=36.8
Q ss_pred CCCCCCCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 1 MVEGKQLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 1 ~~~~~~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
|++.-..++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus 1 ~~~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~ 48 (239)
T PRK07666 1 MAQSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVA 48 (239)
T ss_pred CCccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 44333334677886 779999999999999999999999987765544
No 481
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.63 E-value=0.39 Score=45.74 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=35.1
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4688887 7999999999999999999999999876655443
No 482
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.62 E-value=0.26 Score=49.37 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=69.0
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||.|||+|.+|..++++|+..|. +++++|.+.-....+.++-.. ....+-.-+....+.++.+ .+++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc--
Confidence 68999999999999999999997 889999876544444332100 0000000111122222222 144545444322
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
+.+. ......+..-++||++.-. +..-..+.+.+...++.|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011234456888888654 3333345667778899999987655
No 483
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.62 E-value=0.31 Score=46.75 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=67.8
Q ss_pred cEEEEcccHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHhhhh-cCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 9 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKK-EGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 9 kIgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~-~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
||.|||+|..|..++++|+..|+ +++++|.+.=....+.++-.. ....+-.-+....+.++++ .+++=+.+....-.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~-np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDR-NPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHH-CCCCEEEEEeccCC
Confidence 58999999999999999999997 888999875443333322100 0000000011122222221 14544544433210
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEecCCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSG 136 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pvsg 136 (487)
-.... -...+..-++||++.... ..-..+.+.+...++.+++++..|
T Consensus 80 ~~~~~--~~~f~~~~DvVi~a~Dn~-~aR~~ln~~c~~~~iplI~~g~~G 126 (234)
T cd01484 80 PEQDF--NDTFFEQFHIIVNALDNI-IARRYVNGMLIFLIVPLIESGTEG 126 (234)
T ss_pred hhhhc--hHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcccC
Confidence 00111 012344568999886643 333335566677889999887654
No 484
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.61 E-value=0.38 Score=46.01 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|+++..+++.+.... .-.. ...+..=+.+...
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~D~~~~~~ 64 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD--------------AGGS---VIYLVADVTKEDE 64 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---eEEEECCCCCHHH
Confidence 3577777 79999999999999999999999998877665543210 0000 1222222344445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.+.+.+=++||.+..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 65 IADMIAAAAAEFGGLDILVNNAG 87 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666655555566666553
No 485
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.81 Score=44.23 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=53.8
Q ss_pred cEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEE--EecCCCh
Q 011394 9 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVII--MLVKAGA 85 (487)
Q Consensus 9 kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi--~~vp~~~ 85 (487)
.+-|.| .|.+|..+++.|++.|++|++.+|++++.++..+.... .... .++.+ .=+.+..
T Consensus 10 ~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~D~~~~~ 72 (265)
T PRK07062 10 VAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE--------------KFPG---ARLLAARCDVLDEA 72 (265)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--------------hCCC---ceEEEEEecCCCHH
Confidence 455556 57899999999999999999999998877665443211 0000 12222 2244445
Q ss_pred hHHHHHHHHhhcccCCCEEEecCCC
Q 011394 86 PVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 86 ~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
.++.+++.+.....+=+++|++...
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 73 DVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 6666666665544444677776643
No 486
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=93.58 E-value=0.36 Score=46.88 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=82.8
Q ss_pred CCCcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCC
Q 011394 6 QLTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAG 84 (487)
Q Consensus 6 ~~~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 84 (487)
+..|+-|-| .|.+|+.....+.+.|..+ +-..+|.+.-... .++.++++.+|+++.. .+|+-++.||++
T Consensus 7 k~tkvivqGitg~~gtfh~~~~l~yGt~~-V~GvtPgkgG~~~--------~g~PVf~tV~EA~~~~-~a~~svI~Vp~~ 76 (293)
T COG0074 7 KDTKVIVQGITGKQGTFHTEQMLAYGTKI-VGGVTPGKGGQTI--------LGLPVFNTVEEAVKET-GANASVIFVPPP 76 (293)
T ss_pred CCCeEEEeccccccchHHHHHHHHhCCce-eecccCCCCceEE--------cCccHHHHHHHHHHhh-CCCEEEEecCcH
Confidence 346788888 8999999999999999863 3344444321111 1356788999999876 699999999998
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
.+.+.+++.+...+ .-+++-+-++.+.++.++.+.++++|...++
T Consensus 77 ~aadai~EAida~i--~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG 121 (293)
T COG0074 77 FAADAILEAIDAGI--KLVVIITEGIPVLDMLELKRYAREKGTRLIG 121 (293)
T ss_pred HHHHHHHHHHhCCC--cEEEEEeCCCCHHHHHHHHHHHHhcCCEEEC
Confidence 87777777665433 2455555666777888888888999987774
No 487
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.5 Score=45.30 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=35.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4677887 6899999999999999999999999887665544
No 488
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.56 E-value=0.097 Score=54.14 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=32.9
Q ss_pred CCCCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCCh
Q 011394 5 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 40 (487)
Q Consensus 5 ~~~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 40 (487)
..+.+|.|||.|..|..+|..|+++|++|.++|+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 445689999999999999999999999999999875
No 489
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.55 E-value=0.59 Score=45.46 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=53.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+... . ..++..=+.+...
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------------~---~~~~~~D~~~~~~ 64 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG------------------L---VVGGPLDVTDPAS 64 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------------------c---ceEEEccCCCHHH
Confidence 4677887 5999999999999999999999999988766543210 1 2222222334445
Q ss_pred HHHHHHHHhhcccCCCEEEecCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGN 109 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st 109 (487)
++.+++.+.....+=+++|++..
T Consensus 65 ~~~~~~~~~~~~~~id~li~~ag 87 (273)
T PRK07825 65 FAAFLDAVEADLGPIDVLVNNAG 87 (273)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 56666665554444466666544
No 490
>PRK06194 hypothetical protein; Provisional
Probab=93.55 E-value=0.65 Score=45.50 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=54.5
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCC
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAG 84 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 84 (487)
++|-|.| .|-+|..+++.|++.|++|++.||+.+..++..+.... .. .++.++. +.+.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~d~ 67 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA----------------QG---AEVLGVRTDVSDA 67 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----------------cC---CeEEEEECCCCCH
Confidence 4677776 68999999999999999999999998776655432210 01 2332222 3344
Q ss_pred hhHHHHHHHHhhcccCCCEEEecCCC
Q 011394 85 APVDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 85 ~~v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
..++.+++++.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 68 AQVEALADAALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666655544445777777654
No 491
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.54 E-value=0.58 Score=44.64 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=63.9
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCcc-ccCCHHHHHhhcCCCcEEEEe-----c
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLF-GFRDPESFVNSIQKPRVIIML-----V 81 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~-~~~s~~e~~~~l~~advIi~~-----v 81 (487)
++|-=||+| |..++.-|++.|.+|++.|.+++.++.........+ ..+. ...+.+|+...=+.-|+|+++ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 467778888 568999999999999999999998876654433221 1111 234566666532347988775 3
Q ss_pred CCChhHHHHHHHHhhcccCCCEEEec
Q 011394 82 KAGAPVDETIKTLSAYMEKGDCIIDG 107 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g~iiId~ 107 (487)
|++ +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 55777788888888766543
No 492
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.52 E-value=0.14 Score=52.33 Aligned_cols=94 Identities=18% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCcEEEEc-ccHHHHHHHH-HHHHCCCc---EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEec
Q 011394 7 LTRIGLAG-LAVMGQNLAL-NIAEKGFP---ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLV 81 (487)
Q Consensus 7 ~~kIgiIG-lG~mG~~lA~-~L~~~G~~---V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~v 81 (487)
|++||||| .|.+|.-|.+ .|.+..++ +..+..... ........... ..+....+.+++ .+ +|++|+|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s-g~~~~~f~g~~--~~v~~~~~~~~~-~~---~Divf~a~ 73 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA-GGAAPSFGGKE--GTLQDAFDIDAL-KK---LDIIITCQ 73 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh-CCcccccCCCc--ceEEecCChhHh-cC---CCEEEECC
Confidence 46999999 5999999998 55555666 666544311 11111110000 011111233444 33 99999999
Q ss_pred CCChhHHHHHHHHhhcccCC--CEEEecCCCC
Q 011394 82 KAGAPVDETIKTLSAYMEKG--DCIIDGGNEW 111 (487)
Q Consensus 82 p~~~~v~~vl~~l~~~l~~g--~iiId~st~~ 111 (487)
|.+ ....+...+. ..| .+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~---~aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 GGD-YTNEVYPKLR---AAGWQGYWIDAASTL 101 (369)
T ss_pred CHH-HHHHHHHHHH---hCCCCeEEEECChHH
Confidence 876 4444444433 357 5799998653
No 493
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.65 Score=45.49 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCcEE-EEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH
Q 011394 7 LTRIG-LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 48 (487)
Q Consensus 7 ~~kIg-iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~ 48 (487)
|.|+. |.|.|-+|..+|+.|+ .|++|++.+|++++.+++.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~ 42 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAK 42 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH
Confidence 34544 4589999999999997 79999999999877665543
No 494
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.57 Score=45.64 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4577887 7999999999999999999999999887665543210 01 2233333444445
Q ss_pred HHHHHHHHhhcccCCCEEEecCCC
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNE 110 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~ 110 (487)
++.++.++.+...+=++||+++..
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566665555444444677776543
No 495
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.49 E-value=0.43 Score=49.71 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=62.4
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEe--cCCCh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIML--VKAGA 85 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~ 85 (487)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.+ +... . .+... ...+|+||.+ +|...
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~g-------i~~~-~-~~~~~-~~~~d~vv~sp~i~~~~ 68 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEG-------NLLL-P-SNDFD-PNKSDLEIPSPGIPPSH 68 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcC-------CEEe-c-HHHcC-cCCCCEEEECCCCCCCC
Confidence 57999999999999999999 9999999996543221 11111 2222 2 22221 0138888765 44332
Q ss_pred -hHH---HHHH--HHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCC
Q 011394 86 -PVD---ETIK--TLSAYMEKGDCIIDGGNEWYENTERREKAMAELGL 127 (487)
Q Consensus 86 -~v~---~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 127 (487)
.+. .++. +++..+.+..|-|-.|++...++.-+...+...|.
T Consensus 69 ~~~~~a~~i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 69 PLIQKAKNLISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 121 2221 22222223356666777776666656677777663
No 496
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.69 Score=44.07 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=34.0
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 4677887 699999999999999999999999977665544
No 497
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.49 E-value=0.13 Score=52.97 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=33.0
Q ss_pred CCcEEEEcccHHHHHHHHHHHHCCCcEEEEeCChHH
Q 011394 7 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 42 (487)
Q Consensus 7 ~~kIgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 42 (487)
|++|||||.|..|..|+....+.|++|.++|.+++.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 568999999999999999999999999999988654
No 498
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.43 E-value=0.58 Score=45.28 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=33.6
Q ss_pred CcEEEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH
Q 011394 8 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 47 (487)
Q Consensus 8 ~kIgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~ 47 (487)
+++-|+| .|-+|..+++.|++.|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3566666 678999999999999999999999987766654
No 499
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.42 E-value=0.83 Score=44.25 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=70.3
Q ss_pred CcEEEEcccHHHHHHHHHHHHCCCc-EEEEeCChHHHHHHHHhhhhcCCCCccccCCHHHHHhhcCCCcEEEEecCCChh
Q 011394 8 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAP 86 (487)
Q Consensus 8 ~kIgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 86 (487)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+..... ++. +.-++...-...|+|+..... ..
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~---~~~~~~~~~~~fD~Vvani~~-~~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVE---LNVYLPQGDLKADVIVANILA-NP 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCC---ceEEEccCCCCcCEEEEcCcH-HH
Confidence 5789999998 6 455566777775 999999999887766543321 110 000010000026888765543 34
Q ss_pred HHHHHHHHhhcccCCCEEEecCCCCchhHHHHHHHHHHcCCeEEe
Q 011394 87 VDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLG 131 (487)
Q Consensus 87 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 131 (487)
+..++..+...+++|-.++-.+. .......+.+.+...|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEEE
Confidence 66677888888988877765433 334455566677777876654
No 500
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.42 E-value=0.17 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=29.7
Q ss_pred EEEc-ccHHHHHHHHHHHHCCCcEEEEeCChHHHH
Q 011394 11 GLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 44 (487)
Q Consensus 11 giIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 44 (487)
-|.| +|.+|+.+++.|++.|++|++.+|++.+..
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 36 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGA 36 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCC
Confidence 4666 799999999999999999999999887643
Done!