Query 011395
Match_columns 487
No_of_seqs 282 out of 1875
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 00:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0770 MurF UDP-N-acetylmuram 100.0 7.1E-89 1.5E-93 696.0 50.8 444 26-486 2-450 (451)
2 PRK14093 UDP-N-acetylmuramoyla 100.0 5.1E-86 1.1E-90 694.2 52.1 447 25-485 5-465 (479)
3 PRK10773 murF UDP-N-acetylmura 100.0 6.9E-86 1.5E-90 689.0 52.3 438 27-485 4-448 (453)
4 TIGR01143 murF UDP-N-acetylmur 100.0 4.6E-84 1E-88 669.6 49.2 414 51-484 1-417 (417)
5 PRK11930 putative bifunctional 100.0 2E-79 4.3E-84 682.7 53.2 442 27-486 3-455 (822)
6 PRK11929 putative bifunctional 100.0 3.6E-77 7.9E-82 676.4 51.1 424 46-485 526-958 (958)
7 TIGR01085 murE UDP-N-acetylmur 100.0 3.7E-73 8E-78 596.2 43.7 412 46-477 4-451 (464)
8 PRK00139 murE UDP-N-acetylmura 100.0 1.6E-72 3.5E-77 589.7 42.1 399 45-476 14-436 (460)
9 PRK14022 UDP-N-acetylmuramoyla 100.0 1.2E-69 2.5E-74 571.2 41.4 402 46-481 34-462 (481)
10 PRK11929 putative bifunctional 100.0 3.6E-68 7.9E-73 602.9 46.0 413 45-475 28-475 (958)
11 COG0769 MurE UDP-N-acetylmuram 100.0 3E-60 6.6E-65 490.9 36.8 410 47-475 11-450 (475)
12 PRK01710 murD UDP-N-acetylmura 100.0 1.6E-51 3.4E-56 431.0 36.8 319 132-483 117-457 (458)
13 PRK03806 murD UDP-N-acetylmura 100.0 1.3E-50 2.8E-55 422.8 38.4 365 52-484 59-437 (438)
14 COG0773 MurC UDP-N-acetylmuram 100.0 7.1E-50 1.5E-54 400.1 40.9 349 100-484 90-457 (459)
15 PRK00421 murC UDP-N-acetylmura 100.0 1E-49 2.3E-54 418.0 44.2 333 132-484 107-452 (461)
16 PRK04308 murD UDP-N-acetylmura 100.0 4.1E-50 8.9E-55 419.7 39.2 321 131-483 109-444 (445)
17 PRK04663 murD UDP-N-acetylmura 100.0 6.2E-50 1.3E-54 416.9 37.3 317 132-484 108-437 (438)
18 PRK02006 murD UDP-N-acetylmura 100.0 1.2E-49 2.5E-54 421.3 39.7 418 27-485 20-491 (498)
19 TIGR01087 murD UDP-N-acetylmur 100.0 7.5E-50 1.6E-54 416.6 37.4 317 132-481 102-431 (433)
20 PRK03803 murD UDP-N-acetylmura 100.0 2.5E-49 5.5E-54 414.0 39.9 324 132-484 108-446 (448)
21 TIGR01081 mpl UDP-N-acetylmura 100.0 1.3E-48 2.9E-53 408.2 40.9 320 133-474 103-435 (448)
22 PRK00141 murD UDP-N-acetylmura 100.0 6.5E-49 1.4E-53 412.1 38.1 322 132-485 121-467 (473)
23 PRK01390 murD UDP-N-acetylmura 100.0 2.9E-49 6.3E-54 414.9 35.3 361 86-484 65-458 (460)
24 TIGR01082 murC UDP-N-acetylmur 100.0 5.8E-48 1.2E-52 403.4 44.8 325 132-474 99-439 (448)
25 PRK14106 murD UDP-N-acetylmura 100.0 2E-49 4.3E-54 415.6 33.2 323 121-472 99-426 (450)
26 COG0771 MurD UDP-N-acetylmuram 100.0 1.2E-48 2.7E-53 395.8 35.1 322 131-484 109-446 (448)
27 PRK02472 murD UDP-N-acetylmura 100.0 2E-48 4.4E-53 407.6 37.5 323 132-485 108-445 (447)
28 PRK02705 murD UDP-N-acetylmura 100.0 3.4E-48 7.3E-53 407.2 39.0 327 131-485 108-456 (459)
29 PRK03369 murD UDP-N-acetylmura 100.0 1.9E-48 4E-53 409.9 36.9 323 132-485 117-487 (488)
30 PRK01368 murD UDP-N-acetylmura 100.0 3.2E-48 6.9E-53 403.6 38.1 322 132-484 104-446 (454)
31 PRK00683 murD UDP-N-acetylmura 100.0 3.6E-49 7.7E-54 408.8 30.4 343 61-487 60-417 (418)
32 PRK01438 murD UDP-N-acetylmura 100.0 2.7E-48 5.9E-53 409.9 32.7 330 129-485 119-477 (480)
33 PRK04690 murD UDP-N-acetylmura 100.0 2.3E-46 4.9E-51 392.1 38.9 322 132-483 115-454 (468)
34 TIGR02068 cya_phycin_syn cyano 100.0 5.3E-47 1.1E-51 420.7 34.0 358 114-481 459-858 (864)
35 TIGR01499 folC folylpolyglutam 100.0 7.8E-47 1.7E-51 389.1 30.5 327 113-473 3-387 (397)
36 PRK03815 murD UDP-N-acetylmura 100.0 8.2E-44 1.8E-48 364.3 33.0 300 132-483 89-400 (401)
37 PLN02913 dihydrofolate synthet 100.0 5.6E-43 1.2E-47 367.9 33.2 342 113-473 60-498 (510)
38 PRK14573 bifunctional D-alanyl 100.0 6E-42 1.3E-46 381.1 41.3 315 132-472 104-436 (809)
39 PRK10846 bifunctional folylpol 100.0 8.2E-43 1.8E-47 360.7 32.0 322 113-473 34-404 (416)
40 COG0285 FolC Folylpolyglutamat 100.0 4.1E-40 8.9E-45 333.0 31.4 328 115-473 27-411 (427)
41 PLN02881 tetrahydrofolylpolygl 100.0 1.9E-35 4.1E-40 306.1 33.1 324 113-473 44-518 (530)
42 PF08245 Mur_ligase_M: Mur lig 100.0 2.9E-35 6.3E-40 272.2 16.5 186 137-326 1-188 (188)
43 PRK14016 cyanophycin synthetas 100.0 1.7E-31 3.6E-36 291.8 21.1 221 129-352 477-726 (727)
44 KOG2525 Folylpolyglutamate syn 100.0 6.6E-27 1.4E-31 233.1 22.1 324 113-473 55-482 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.6 8.8E-16 1.9E-20 124.4 7.4 83 346-430 1-83 (91)
46 PF01225 Mur_ligase: Mur ligas 99.4 6.9E-15 1.5E-19 117.0 -3.7 72 46-125 2-82 (83)
47 PF08353 DUF1727: Domain of un 97.4 0.00077 1.7E-08 56.3 7.8 104 367-470 2-107 (113)
48 COG1703 ArgK Putative periplas 95.5 0.2 4.4E-06 48.7 11.8 122 121-258 41-204 (323)
49 PF03308 ArgK: ArgK protein; 93.6 0.31 6.8E-06 46.6 8.0 123 118-255 16-179 (266)
50 PRK09435 membrane ATPase/prote 92.3 2.3 4.9E-05 42.8 12.5 34 129-162 53-88 (332)
51 PF04613 LpxD: UDP-3-O-[3-hydr 91.3 0.48 1E-05 36.1 5.0 55 56-124 14-71 (72)
52 PRK00652 lpxK tetraacyldisacch 91.2 0.64 1.4E-05 46.5 7.2 36 129-164 46-85 (325)
53 TIGR03172 probable selenium-de 89.4 0.43 9.4E-06 45.3 4.0 33 134-166 1-33 (232)
54 PRK15453 phosphoribulokinase; 89.0 0.54 1.2E-05 45.8 4.5 29 130-158 3-33 (290)
55 TIGR03815 CpaE_hom_Actino heli 88.7 1.9 4.2E-05 43.1 8.5 81 61-162 43-126 (322)
56 COG1044 LpxD UDP-3-O-[3-hydrox 88.4 1.3 2.8E-05 43.9 6.7 87 26-127 3-94 (338)
57 PHA02519 plasmid partition pro 87.8 0.88 1.9E-05 46.8 5.4 50 113-162 86-139 (387)
58 COG1763 MobB Molybdopterin-gua 87.6 0.73 1.6E-05 41.1 4.1 31 132-162 2-34 (161)
59 COG1936 Predicted nucleotide k 87.5 0.64 1.4E-05 41.7 3.6 26 133-162 1-28 (180)
60 PRK13705 plasmid-partitioning 86.8 0.97 2.1E-05 46.6 5.1 51 113-163 86-140 (388)
61 PRK14489 putative bifunctional 86.8 1.4 3.1E-05 45.0 6.2 52 111-162 183-237 (366)
62 PRK00892 lpxD UDP-3-O-[3-hydro 86.6 3 6.6E-05 42.1 8.5 85 26-125 2-91 (343)
63 TIGR01007 eps_fam capsular exo 86.2 1.6 3.6E-05 40.3 5.9 34 129-162 14-50 (204)
64 PF03205 MobB: Molybdopterin g 85.6 3.6 7.8E-05 35.8 7.3 30 133-162 1-32 (140)
65 cd01983 Fer4_NifH The Fer4_Nif 85.5 1.1 2.4E-05 35.1 3.9 40 135-194 2-43 (99)
66 PRK06696 uridine kinase; Valid 85.1 2.5 5.5E-05 39.8 6.7 47 115-161 4-53 (223)
67 PRK05439 pantothenate kinase; 84.8 1.2 2.7E-05 44.1 4.5 43 114-156 67-112 (311)
68 PF00485 PRK: Phosphoribulokin 84.3 0.93 2E-05 41.7 3.2 27 134-160 1-29 (194)
69 PRK13869 plasmid-partitioning 84.3 1.2 2.6E-05 46.2 4.3 37 126-162 115-154 (405)
70 COG2403 Predicted GTPase [Gene 84.2 1.1 2.5E-05 44.8 3.9 32 131-162 125-159 (449)
71 COG0132 BioD Dethiobiotin synt 83.7 1.6 3.4E-05 41.2 4.4 31 132-162 2-35 (223)
72 COG0769 MurE UDP-N-acetylmuram 83.7 0.62 1.3E-05 49.2 2.0 96 130-227 62-161 (475)
73 PRK07667 uridine kinase; Provi 83.5 2.3 4.9E-05 39.1 5.4 30 132-161 17-48 (193)
74 TIGR03029 EpsG chain length de 83.3 3.1 6.7E-05 40.5 6.6 49 114-162 83-136 (274)
75 TIGR03018 pepcterm_TyrKin exop 82.3 4.2 9.2E-05 37.7 6.8 34 129-162 32-69 (207)
76 COG4240 Predicted kinase [Gene 82.2 3.5 7.6E-05 38.8 5.9 49 113-162 32-83 (300)
77 PRK14494 putative molybdopteri 81.9 2 4.4E-05 40.7 4.5 31 132-162 1-33 (229)
78 TIGR01853 lipid_A_lpxD UDP-3-O 81.6 4 8.6E-05 40.9 6.7 80 31-125 1-84 (324)
79 TIGR00554 panK_bact pantothena 81.2 1.5 3.4E-05 43.1 3.6 25 131-155 61-87 (290)
80 cd03109 DTBS Dethiobiotin synt 81.0 5.9 0.00013 34.0 6.8 67 137-219 5-79 (134)
81 cd02029 PRK_like Phosphoribulo 80.9 1.8 3.9E-05 41.9 3.8 28 134-161 1-30 (277)
82 cd02042 ParA ParA and ParB of 79.9 16 0.00036 29.3 8.9 47 134-195 4-50 (104)
83 PLN00124 succinyl-CoA ligase [ 79.7 27 0.00058 36.4 12.1 97 359-461 319-420 (422)
84 PRK00771 signal recognition pa 79.4 6.3 0.00014 41.2 7.5 31 132-162 95-127 (437)
85 cd03114 ArgK-like The function 78.6 25 0.00054 30.8 10.1 28 135-162 2-31 (148)
86 PRK12723 flagellar biosynthesi 78.5 8.7 0.00019 39.5 8.1 108 135-254 180-297 (388)
87 PF00448 SRP54: SRP54-type pro 78.4 2 4.3E-05 39.8 3.1 28 134-162 6-33 (196)
88 KOG3347 Predicted nucleotide k 78.0 2 4.4E-05 37.6 2.8 24 131-154 6-31 (176)
89 COG0237 CoaE Dephospho-CoA kin 77.7 2.4 5.1E-05 39.4 3.4 27 132-162 2-30 (201)
90 PRK09270 nucleoside triphospha 77.6 5.2 0.00011 37.8 5.9 32 129-160 30-63 (229)
91 KOG0780 Signal recognition par 77.5 15 0.00033 37.3 9.1 27 135-162 107-133 (483)
92 PRK13232 nifH nitrogenase redu 77.1 3.2 6.9E-05 40.4 4.4 30 133-162 2-33 (273)
93 COG0541 Ffh Signal recognition 77.0 8.7 0.00019 39.6 7.4 108 135-252 106-222 (451)
94 cd03116 MobB Molybdenum is an 76.9 3.8 8.3E-05 36.5 4.4 31 132-162 1-33 (159)
95 PRK10416 signal recognition pa 76.2 2.2 4.9E-05 42.6 3.0 31 132-162 114-146 (318)
96 TIGR03453 partition_RepA plasm 76.1 3.8 8.1E-05 42.2 4.8 34 129-162 101-137 (387)
97 PRK14493 putative bifunctional 76.0 4 8.6E-05 39.9 4.6 30 132-162 1-32 (274)
98 PF06564 YhjQ: YhjQ protein; 75.7 2.9 6.3E-05 40.0 3.5 30 134-163 6-35 (243)
99 PRK14974 cell division protein 75.7 4.1 8.9E-05 41.0 4.8 31 132-162 140-172 (336)
100 TIGR01425 SRP54_euk signal rec 75.6 25 0.00055 36.6 10.6 31 132-162 100-132 (429)
101 TIGR00750 lao LAO/AO transport 75.4 14 0.0003 36.6 8.4 33 130-162 32-66 (300)
102 COG1618 Predicted nucleotide k 75.1 4.1 8.9E-05 36.3 4.0 31 133-163 6-38 (179)
103 PRK14495 putative molybdopteri 74.6 4.2 9E-05 42.2 4.5 31 132-162 1-33 (452)
104 PRK11890 phosphate acetyltrans 74.4 33 0.00071 34.1 10.6 101 366-476 3-108 (312)
105 cd02028 UMPK_like Uridine mono 74.4 3.9 8.4E-05 37.1 3.9 28 134-161 1-30 (179)
106 PRK00784 cobyric acid synthase 74.2 3.7 8E-05 43.7 4.2 30 133-162 3-35 (488)
107 PHA02518 ParA-like protein; Pr 73.7 4.7 0.0001 37.2 4.4 27 136-162 7-33 (211)
108 cd02025 PanK Pantothenate kina 73.1 3.9 8.5E-05 38.5 3.7 23 134-156 1-25 (220)
109 PRK13235 nifH nitrogenase redu 72.9 4.8 0.0001 39.1 4.4 30 133-162 2-33 (274)
110 COG0552 FtsY Signal recognitio 72.7 5.4 0.00012 39.7 4.6 34 132-165 139-174 (340)
111 TIGR00682 lpxK tetraacyldisacc 72.4 7.3 0.00016 38.8 5.6 35 129-163 25-63 (311)
112 PRK02261 methylaspartate mutas 72.4 63 0.0014 27.9 12.5 92 331-438 41-132 (137)
113 TIGR00176 mobB molybdopterin-g 72.3 4.7 0.0001 35.7 3.8 29 134-162 1-31 (155)
114 COG2894 MinD Septum formation 72.1 4.3 9.4E-05 38.0 3.5 30 133-162 3-35 (272)
115 COG5008 PilU Tfp pilus assembl 72.1 3.2 6.9E-05 40.0 2.7 116 85-218 93-210 (375)
116 TIGR00064 ftsY signal recognit 71.8 6 0.00013 38.6 4.8 32 131-162 71-104 (272)
117 TIGR03371 cellulose_yhjQ cellu 71.8 5.3 0.00011 37.9 4.4 30 133-162 2-34 (246)
118 PRK14723 flhF flagellar biosyn 71.1 10 0.00023 42.3 6.9 30 132-161 185-218 (767)
119 PF05582 Peptidase_U57: YabG p 70.8 29 0.00063 33.7 8.9 116 349-482 98-218 (287)
120 cd02040 NifH NifH gene encodes 70.8 3.9 8.4E-05 39.5 3.2 25 138-162 9-33 (270)
121 PRK01906 tetraacyldisaccharide 70.6 9.1 0.0002 38.6 5.8 35 129-163 53-91 (338)
122 cd02117 NifH_like This family 70.4 4.5 9.8E-05 37.6 3.5 29 134-162 2-32 (212)
123 PRK10751 molybdopterin-guanine 70.2 7 0.00015 35.3 4.4 32 131-162 5-38 (173)
124 COG1797 CobB Cobyrinic acid a, 69.9 10 0.00022 39.1 6.0 27 135-161 3-32 (451)
125 COG4080 SpoU rRNA Methylase fa 69.8 26 0.00056 30.1 7.3 16 442-457 57-72 (147)
126 TIGR00041 DTMP_kinase thymidyl 69.8 8.5 0.00018 35.1 5.1 33 132-164 3-37 (195)
127 COG0572 Udk Uridine kinase [Nu 69.7 4.7 0.0001 37.7 3.3 25 131-155 7-33 (218)
128 PRK11889 flhF flagellar biosyn 69.4 52 0.0011 34.1 10.8 30 133-162 242-273 (436)
129 PRK12726 flagellar biosynthesi 69.2 28 0.00061 35.7 8.9 31 132-162 206-238 (407)
130 PF01121 CoaE: Dephospho-CoA k 68.3 4.3 9.2E-05 37.0 2.7 25 134-162 2-28 (180)
131 COG1072 CoaA Panthothenate kin 68.3 5.4 0.00012 38.6 3.5 30 131-160 81-112 (283)
132 PF01656 CbiA: CobQ/CobB/MinD/ 67.9 5.5 0.00012 36.0 3.4 29 134-162 3-31 (195)
133 TIGR00959 ffh signal recogniti 67.9 19 0.00041 37.6 7.7 30 133-162 100-132 (428)
134 PRK12374 putative dithiobiotin 67.7 7.5 0.00016 36.8 4.4 29 134-162 4-35 (231)
135 COG0595 mRNA degradation ribon 67.7 41 0.00088 36.3 10.2 32 360-394 228-259 (555)
136 PRK10867 signal recognition pa 67.2 45 0.00098 34.9 10.3 31 132-162 100-133 (433)
137 PF13500 AAA_26: AAA domain; P 67.1 7.2 0.00016 35.8 4.1 29 134-162 2-33 (199)
138 PF13207 AAA_17: AAA domain; P 67.0 5.3 0.00012 33.1 2.9 25 134-161 1-27 (121)
139 PF02606 LpxK: Tetraacyldisacc 66.9 9.5 0.00021 38.3 5.1 35 129-163 32-70 (326)
140 TIGR02855 spore_yabG sporulati 66.6 44 0.00095 32.3 9.1 101 369-483 113-218 (283)
141 PF06309 Torsin: Torsin; Inte 66.3 14 0.00031 31.5 5.2 42 118-160 38-83 (127)
142 cd02033 BchX Chlorophyllide re 66.3 9.3 0.0002 38.4 4.9 33 130-162 29-63 (329)
143 cd02036 MinD Bacterial cell di 65.8 7 0.00015 34.8 3.6 29 134-162 4-32 (179)
144 PTZ00451 dephospho-CoA kinase; 65.2 7.6 0.00017 37.2 3.9 27 133-162 2-30 (244)
145 PRK05380 pyrG CTP synthetase; 64.1 14 0.00031 39.3 5.9 31 132-162 2-36 (533)
146 PRK00553 ribose-phosphate pyro 63.9 1.3E+02 0.0027 30.3 12.4 144 319-472 19-176 (332)
147 cd02032 Bchl_like This family 63.3 6.9 0.00015 37.8 3.3 25 138-162 8-32 (267)
148 cd01453 vWA_transcription_fact 63.3 1.1E+02 0.0023 27.8 11.0 89 370-463 89-181 (183)
149 TIGR01968 minD_bact septum sit 63.2 9.8 0.00021 36.3 4.3 30 133-162 2-34 (261)
150 PRK11670 antiporter inner memb 62.5 10 0.00022 38.7 4.5 32 132-163 107-141 (369)
151 COG3954 PrkB Phosphoribulokina 62.3 5.2 0.00011 36.5 2.0 33 130-162 3-37 (289)
152 TIGR01281 DPOR_bchL light-inde 62.3 6.7 0.00015 37.9 3.0 25 138-162 8-32 (268)
153 PRK01077 cobyrinic acid a,c-di 62.2 8.9 0.00019 40.4 4.1 31 132-162 3-36 (451)
154 PRK00889 adenylylsulfate kinas 62.1 13 0.00028 33.3 4.6 32 131-162 3-36 (175)
155 PRK00090 bioD dithiobiotin syn 61.5 11 0.00023 35.3 4.1 22 141-162 11-32 (222)
156 COG1880 CdhB CO dehydrogenase/ 61.4 56 0.0012 28.8 8.0 88 387-486 36-131 (170)
157 CHL00072 chlL photochlorophyll 61.4 7.3 0.00016 38.4 3.1 25 138-162 8-32 (290)
158 COG0125 Tmk Thymidylate kinase 60.8 9.2 0.0002 35.7 3.5 42 132-173 3-46 (208)
159 TIGR02880 cbbX_cfxQ probable R 60.7 7.2 0.00016 38.3 2.9 26 133-159 62-87 (284)
160 PF02223 Thymidylate_kin: Thym 60.7 7.2 0.00016 35.3 2.7 33 141-173 7-39 (186)
161 cd04743 NPD_PKS 2-Nitropropane 60.5 1E+02 0.0022 30.8 10.8 96 366-472 35-132 (320)
162 PRK13849 putative crown gall t 59.0 9.2 0.0002 36.3 3.2 30 133-162 2-34 (231)
163 PRK14491 putative bifunctional 58.9 12 0.00026 40.8 4.5 33 130-162 8-42 (597)
164 PRK13230 nitrogenase reductase 58.9 8.3 0.00018 37.6 3.0 30 133-162 2-33 (279)
165 PRK09841 cryptic autophosphory 58.5 21 0.00045 40.1 6.3 49 115-163 512-565 (726)
166 PRK03846 adenylylsulfate kinas 58.4 17 0.00037 33.3 4.9 32 130-161 22-55 (198)
167 COG1465 Predicted alternative 58.3 61 0.0013 31.6 8.4 79 405-484 106-189 (376)
168 PRK13185 chlL protochlorophyll 58.1 9.6 0.00021 36.8 3.3 30 133-162 3-34 (270)
169 cd01672 TMPK Thymidine monopho 57.8 16 0.00034 33.0 4.5 30 134-163 2-33 (200)
170 COG3640 CooC CO dehydrogenase 57.8 15 0.00032 34.8 4.2 30 134-163 2-34 (255)
171 cd02034 CooC The accessory pro 57.6 12 0.00026 31.3 3.3 25 138-162 7-31 (116)
172 PRK08233 hypothetical protein; 57.3 9.6 0.00021 34.1 2.9 23 132-154 3-27 (182)
173 PF07755 DUF1611: Protein of u 57.2 17 0.00036 36.0 4.7 156 76-240 53-252 (301)
174 TIGR00455 apsK adenylylsulfate 56.7 23 0.00051 31.9 5.4 32 130-161 16-49 (184)
175 TIGR02016 BchX chlorophyllide 56.7 10 0.00023 37.4 3.3 25 138-162 8-32 (296)
176 PRK05480 uridine/cytidine kina 56.5 12 0.00026 34.7 3.5 24 131-154 5-30 (209)
177 PF13614 AAA_31: AAA domain; P 56.4 15 0.00032 32.0 3.9 29 134-162 2-33 (157)
178 PRK10037 cell division protein 56.4 11 0.00023 36.2 3.2 30 133-162 2-34 (250)
179 PLN02924 thymidylate kinase 56.0 19 0.00042 33.9 4.8 34 129-162 13-48 (220)
180 TIGR00313 cobQ cobyric acid sy 55.9 11 0.00024 39.9 3.5 25 138-162 6-31 (475)
181 PRK04923 ribose-phosphate pyro 55.9 2E+02 0.0043 28.8 12.2 111 320-434 17-140 (319)
182 PF01583 APS_kinase: Adenylyls 55.6 19 0.00041 31.9 4.4 32 132-163 2-35 (156)
183 cd02023 UMPK Uridine monophosp 55.3 10 0.00022 34.8 2.7 21 134-154 1-23 (198)
184 PRK14709 hypothetical protein; 55.2 21 0.00045 37.8 5.4 44 111-154 183-229 (469)
185 TIGR00379 cobB cobyrinic acid 55.0 15 0.00032 38.6 4.3 84 135-218 4-120 (449)
186 cd02026 PRK Phosphoribulokinas 54.7 10 0.00022 37.0 2.8 25 134-158 1-27 (273)
187 cd02024 NRK1 Nicotinamide ribo 54.6 9.4 0.0002 35.0 2.4 21 134-154 1-23 (187)
188 PRK07933 thymidylate kinase; V 54.6 19 0.00042 33.6 4.6 31 134-164 2-34 (213)
189 COG3172 NadR Predicted ATPase/ 54.5 12 0.00027 33.3 2.9 23 132-154 8-32 (187)
190 TIGR01501 MthylAspMutase methy 54.4 76 0.0016 27.4 7.8 92 331-438 39-130 (134)
191 TIGR01251 ribP_PPkin ribose-ph 54.4 2E+02 0.0044 28.5 12.0 150 319-475 10-171 (308)
192 PRK05632 phosphate acetyltrans 54.4 61 0.0013 36.1 9.1 81 138-218 10-116 (684)
193 TIGR00315 cdhB CO dehydrogenas 54.1 51 0.0011 29.4 6.9 100 369-486 16-123 (162)
194 TIGR01969 minD_arch cell divis 53.7 14 0.0003 35.1 3.5 27 136-162 7-33 (251)
195 TIGR01287 nifH nitrogenase iro 53.6 12 0.00027 36.2 3.2 25 138-162 8-32 (275)
196 PLN02369 ribose-phosphate pyro 53.4 1.3E+02 0.0029 29.7 10.5 109 321-433 3-123 (302)
197 PRK13234 nifH nitrogenase redu 53.4 13 0.00027 36.8 3.2 31 132-162 4-36 (295)
198 PLN02796 D-glycerate 3-kinase 53.4 25 0.00055 35.4 5.4 49 113-161 77-131 (347)
199 TIGR01613 primase_Cterm phage/ 53.4 26 0.00055 34.7 5.5 41 113-154 56-100 (304)
200 cd02037 MRP-like MRP (Multiple 53.1 15 0.00032 32.7 3.4 27 136-162 6-32 (169)
201 PRK13236 nitrogenase reductase 52.8 13 0.00028 36.7 3.3 31 132-162 6-38 (296)
202 PTZ00301 uridine kinase; Provi 52.5 16 0.00034 34.2 3.5 23 132-154 3-27 (210)
203 COG4555 NatA ABC-type Na+ tran 52.3 12 0.00025 34.8 2.5 30 132-161 28-59 (245)
204 PRK00698 tmk thymidylate kinas 51.7 27 0.00059 31.8 5.1 31 132-162 3-35 (205)
205 KOG3308 Uncharacterized protei 51.4 13 0.00028 34.3 2.7 23 133-155 5-29 (225)
206 PF13521 AAA_28: AAA domain; P 50.8 10 0.00023 33.4 2.0 24 135-162 2-27 (163)
207 COG0045 SucC Succinyl-CoA synt 50.8 2.5E+02 0.0053 28.8 11.7 99 358-462 282-385 (387)
208 PRK11519 tyrosine kinase; Prov 50.7 33 0.00072 38.5 6.4 50 114-163 506-560 (719)
209 PRK14733 coaE dephospho-CoA ki 50.1 19 0.00041 33.5 3.7 28 132-162 6-35 (204)
210 PRK13231 nitrogenase reductase 49.9 8.9 0.00019 37.0 1.5 24 138-162 10-33 (264)
211 PRK07429 phosphoribulokinase; 49.8 19 0.00041 36.1 3.9 27 131-157 7-35 (327)
212 PF11964 SpoIIAA-like: SpoIIAA 49.8 78 0.0017 25.5 7.0 91 368-458 11-108 (109)
213 COG1663 LpxK Tetraacyldisaccha 49.5 28 0.0006 34.9 4.8 36 129-164 44-83 (336)
214 KOG3354 Gluconate kinase [Carb 49.5 16 0.00034 32.5 2.7 21 133-154 16-36 (191)
215 KOG1324 Dihydrofolate reductas 49.3 56 0.0012 29.5 6.2 73 341-425 61-137 (190)
216 KOG2749 mRNA cleavage and poly 49.1 46 0.001 33.6 6.2 50 113-162 84-135 (415)
217 PRK06547 hypothetical protein; 48.9 33 0.00071 30.9 5.0 25 130-154 13-39 (172)
218 PLN03046 D-glycerate 3-kinase; 48.9 38 0.00082 35.2 5.8 31 131-161 211-243 (460)
219 TIGR01033 DNA-binding regulato 48.5 88 0.0019 29.9 7.9 61 319-380 49-116 (238)
220 PRK14730 coaE dephospho-CoA ki 48.4 23 0.00049 32.6 3.9 27 133-162 2-30 (195)
221 PRK00945 acetyl-CoA decarbonyl 48.2 47 0.001 29.9 5.7 100 369-486 23-131 (171)
222 PRK05703 flhF flagellar biosyn 47.8 16 0.00034 38.2 3.0 30 133-162 222-255 (424)
223 COG1855 ATPase (PilT family) [ 47.8 14 0.0003 38.4 2.5 74 133-217 264-339 (604)
224 TIGR00235 udk uridine kinase. 47.6 21 0.00044 33.1 3.5 24 132-155 6-31 (207)
225 KOG0991 Replication factor C, 47.4 28 0.0006 33.1 4.2 46 110-160 31-78 (333)
226 PF10662 PduV-EutP: Ethanolami 47.3 39 0.00086 29.5 5.0 54 181-239 60-116 (143)
227 PF07015 VirC1: VirC1 protein; 47.3 19 0.00042 34.0 3.2 24 139-162 11-34 (231)
228 COG0523 Putative GTPases (G3E 47.3 1.5E+02 0.0032 29.8 9.7 71 178-254 78-156 (323)
229 TIGR02640 gas_vesic_GvpN gas v 46.9 19 0.0004 34.9 3.2 39 114-154 7-45 (262)
230 COG1192 Soj ATPases involved i 46.8 20 0.00044 34.3 3.5 29 134-162 7-36 (259)
231 PRK14734 coaE dephospho-CoA ki 46.6 19 0.00042 33.2 3.1 26 133-162 2-29 (200)
232 TIGR00150 HI0065_YjeE ATPase, 46.4 44 0.00095 28.8 5.1 38 117-154 7-46 (133)
233 cd02022 DPCK Dephospho-coenzym 46.3 21 0.00045 32.2 3.3 25 134-162 1-27 (179)
234 PRK14490 putative bifunctional 46.3 28 0.00061 35.5 4.6 32 130-162 3-36 (369)
235 PRK14722 flhF flagellar biosyn 46.0 72 0.0016 32.7 7.4 31 132-162 137-171 (374)
236 cd02019 NK Nucleoside/nucleoti 46.0 22 0.00047 26.5 2.8 21 134-154 1-23 (69)
237 TIGR00152 dephospho-CoA kinase 45.9 16 0.00035 33.2 2.5 26 134-162 1-28 (188)
238 PF13238 AAA_18: AAA domain; P 45.9 18 0.00039 29.9 2.6 18 136-154 5-22 (129)
239 COG1237 Metal-dependent hydrol 45.7 1.2E+02 0.0026 29.2 8.2 77 352-433 161-240 (259)
240 KOG3022 Predicted ATPase, nucl 45.7 19 0.00042 34.9 3.0 32 132-163 47-81 (300)
241 PF02670 DXP_reductoisom: 1-de 45.7 1.9E+02 0.0042 24.7 9.4 100 374-485 12-112 (129)
242 PF01408 GFO_IDH_MocA: Oxidore 45.6 1.4E+02 0.0031 24.2 8.1 83 389-485 2-84 (120)
243 PF01558 POR: Pyruvate ferredo 44.9 86 0.0019 27.9 7.1 143 142-342 4-152 (173)
244 TIGR01069 mutS2 MutS2 family p 44.9 2.2E+02 0.0047 32.3 11.6 27 133-159 323-353 (771)
245 KOG1805 DNA replication helica 44.7 25 0.00055 39.8 4.1 47 111-162 671-717 (1100)
246 COG4088 Predicted nucleotide k 44.6 26 0.00056 32.7 3.5 59 331-393 126-186 (261)
247 PF09140 MipZ: ATPase MipZ; I 44.5 21 0.00046 34.2 3.0 30 134-163 2-34 (261)
248 COG0529 CysC Adenylylsulfate k 44.4 69 0.0015 29.2 6.0 37 130-166 21-59 (197)
249 PRK13233 nifH nitrogenase redu 44.3 21 0.00045 34.6 3.2 30 133-162 3-35 (275)
250 COG3265 GntK Gluconate kinase 44.1 13 0.00029 32.6 1.5 18 136-154 2-19 (161)
251 PHA02239 putative protein phos 44.1 2.4E+02 0.0052 26.8 10.3 75 359-435 3-77 (235)
252 PF01935 DUF87: Domain of unkn 44.1 22 0.00048 33.3 3.2 29 132-161 26-55 (229)
253 PRK12377 putative replication 44.0 44 0.00096 32.1 5.3 30 133-162 102-133 (248)
254 PRK08525 amidophosphoribosyltr 43.9 1.4E+02 0.003 31.4 9.4 125 319-457 287-427 (445)
255 cd03111 CpaE_like This protein 43.9 27 0.00057 28.5 3.3 47 135-194 5-52 (106)
256 PLN02422 dephospho-CoA kinase 43.9 22 0.00048 33.7 3.1 26 133-162 2-29 (232)
257 PRK10818 cell division inhibit 43.8 25 0.00054 33.9 3.6 30 133-162 3-35 (270)
258 COG4133 CcmA ABC-type transpor 43.6 28 0.0006 32.0 3.5 33 132-164 28-62 (209)
259 PRK14731 coaE dephospho-CoA ki 43.5 22 0.00047 33.1 3.0 26 133-162 6-33 (208)
260 TIGR00347 bioD dethiobiotin sy 43.5 25 0.00054 31.0 3.3 25 139-163 7-31 (166)
261 PRK14732 coaE dephospho-CoA ki 43.4 18 0.00039 33.3 2.4 19 134-152 1-21 (196)
262 PRK13973 thymidylate kinase; P 43.3 28 0.0006 32.5 3.7 32 133-164 4-37 (213)
263 PRK02269 ribose-phosphate pyro 42.9 2.9E+02 0.0063 27.6 11.1 108 320-431 16-135 (320)
264 cd02072 Glm_B12_BD B12 binding 42.6 1.4E+02 0.0031 25.5 7.5 91 331-437 37-127 (128)
265 PRK02458 ribose-phosphate pyro 42.5 3.6E+02 0.0079 27.0 12.0 110 320-434 20-142 (323)
266 PRK06703 flavodoxin; Provision 42.4 1.1E+02 0.0025 26.4 7.3 46 370-419 65-114 (151)
267 CHL00175 minD septum-site dete 42.1 26 0.00056 34.1 3.5 31 132-162 15-48 (281)
268 COG0556 UvrB Helicase subunit 42.0 30 0.00065 36.7 3.9 45 113-161 16-60 (663)
269 PF07085 DRTGG: DRTGG domain; 41.7 84 0.0018 25.4 6.0 80 31-121 1-102 (105)
270 PRK09453 phosphodiesterase; Pr 41.5 1E+02 0.0022 27.7 7.1 68 359-429 3-74 (182)
271 COG1428 Deoxynucleoside kinase 41.4 27 0.00059 32.5 3.2 23 132-154 4-28 (216)
272 PLN02348 phosphoribulokinase 41.4 40 0.00086 34.7 4.7 25 131-155 48-74 (395)
273 cd00477 FTHFS Formyltetrahydro 41.4 37 0.0008 35.9 4.5 33 130-162 36-74 (524)
274 cd03115 SRP The signal recogni 40.7 43 0.00093 29.7 4.5 29 134-162 2-32 (173)
275 PRK13507 formate--tetrahydrofo 40.5 39 0.00084 36.1 4.5 33 130-162 61-99 (587)
276 TIGR03499 FlhF flagellar biosy 40.5 38 0.00082 33.2 4.3 31 132-162 194-228 (282)
277 PRK13810 orotate phosphoribosy 40.2 30 0.00065 31.7 3.3 62 320-384 86-149 (187)
278 PRK04040 adenylate kinase; Pro 40.1 29 0.00063 31.7 3.2 29 132-161 2-32 (188)
279 PF08433 KTI12: Chromatin asso 39.6 35 0.00075 33.3 3.8 30 132-161 1-32 (270)
280 PF07279 DUF1442: Protein of u 39.4 3.3E+02 0.0071 25.6 11.2 113 347-470 27-148 (218)
281 PF00186 DHFR_1: Dihydrofolate 39.4 20 0.00044 31.9 2.0 65 343-425 52-116 (161)
282 PRK14964 DNA polymerase III su 39.1 1.3E+02 0.0028 32.1 8.2 131 110-256 17-157 (491)
283 PRK01259 ribose-phosphate pyro 38.8 4E+02 0.0087 26.4 11.7 109 320-433 11-132 (309)
284 PRK13506 formate--tetrahydrofo 38.7 46 0.00099 35.7 4.7 33 130-162 52-90 (578)
285 COG4917 EutP Ethanolamine util 38.4 2.6E+02 0.0056 24.1 8.1 68 182-256 62-132 (148)
286 PRK02812 ribose-phosphate pyro 38.2 3.8E+02 0.0082 26.9 11.1 143 319-470 31-185 (330)
287 cd00009 AAA The AAA+ (ATPases 38.0 52 0.0011 27.2 4.4 44 116-161 5-50 (151)
288 PF13604 AAA_30: AAA domain; P 37.9 63 0.0014 29.6 5.1 31 133-163 19-51 (196)
289 PLN02974 adenosylmethionine-8- 37.9 40 0.00087 38.3 4.5 31 131-161 26-59 (817)
290 PRK00081 coaE dephospho-CoA ki 37.8 31 0.00068 31.6 3.1 26 133-162 3-30 (194)
291 PRK06761 hypothetical protein; 37.7 30 0.00064 34.0 3.0 30 133-162 4-35 (282)
292 COG0856 Orotate phosphoribosyl 37.1 76 0.0016 28.6 5.1 55 340-395 112-179 (203)
293 PRK00110 hypothetical protein; 36.9 1.7E+02 0.0037 28.0 8.0 62 318-380 48-116 (245)
294 PRK06731 flhF flagellar biosyn 36.9 2.9E+02 0.0062 26.9 9.7 31 132-162 75-107 (270)
295 COG2216 KdpB High-affinity K+ 36.8 3.4E+02 0.0073 29.1 10.4 111 367-478 409-523 (681)
296 PF01268 FTHFS: Formate--tetra 36.6 40 0.00086 36.1 3.9 34 129-162 51-90 (557)
297 PF01709 Transcrip_reg: Transc 36.5 84 0.0018 29.9 5.8 62 318-380 44-112 (234)
298 cd03243 ABC_MutS_homologs The 36.5 36 0.00078 31.3 3.3 22 133-154 30-53 (202)
299 PRK00409 recombination and DNA 36.0 5.1E+02 0.011 29.5 12.8 30 132-161 327-360 (782)
300 PRK13695 putative NTPase; Prov 35.8 55 0.0012 29.2 4.3 28 134-161 2-31 (174)
301 PF06418 CTP_synth_N: CTP synt 35.7 41 0.0009 32.5 3.5 57 133-193 2-64 (276)
302 PRK06995 flhF flagellar biosyn 35.7 51 0.0011 35.0 4.5 24 132-155 256-281 (484)
303 PRK06407 ornithine cyclodeamin 35.6 4.4E+02 0.0096 26.0 13.2 114 357-479 86-220 (301)
304 COG2379 GckA Putative glycerat 35.3 4.1E+02 0.0089 27.3 10.5 88 320-418 209-303 (422)
305 TIGR01005 eps_transp_fam exopo 35.3 68 0.0015 36.2 5.9 34 129-162 543-579 (754)
306 PRK05541 adenylylsulfate kinas 35.1 73 0.0016 28.3 5.0 32 130-161 5-38 (176)
307 PRK12378 hypothetical protein; 35.1 2.1E+02 0.0046 27.2 8.2 62 319-380 47-113 (235)
308 cd01130 VirB11-like_ATPase Typ 34.8 59 0.0013 29.4 4.4 24 132-155 25-50 (186)
309 cd02027 APSK Adenosine 5'-phos 34.8 51 0.0011 28.7 3.8 28 135-162 2-31 (149)
310 COG0489 Mrp ATPases involved i 34.8 44 0.00095 32.4 3.7 33 131-163 56-91 (265)
311 COG1245 Predicted ATPase, RNas 34.7 23 0.0005 37.0 1.7 25 131-155 99-125 (591)
312 cd03273 ABC_SMC2_euk Eukaryoti 34.6 46 0.001 31.7 3.8 26 130-155 23-50 (251)
313 PRK06762 hypothetical protein; 34.5 43 0.00093 29.4 3.4 22 133-154 3-26 (166)
314 PF01488 Shikimate_DH: Shikima 34.1 1.8E+02 0.0039 24.7 7.1 74 386-475 11-87 (135)
315 cd01452 VWA_26S_proteasome_sub 34.1 1.7E+02 0.0038 26.7 7.3 56 370-428 88-147 (187)
316 COG1089 Gmd GDP-D-mannose dehy 33.9 82 0.0018 30.9 5.2 69 134-210 7-80 (345)
317 PRK13896 cobyrinic acid a,c-di 33.9 48 0.001 34.7 4.0 29 134-162 3-34 (433)
318 PF01885 PTS_2-RNA: RNA 2'-pho 33.8 2.2E+02 0.0047 26.0 7.9 137 328-474 46-184 (186)
319 PF02548 Pantoate_transf: Keto 33.7 3.1E+02 0.0067 26.6 9.1 97 375-484 3-127 (261)
320 KOG1970 Checkpoint RAD17-RFC c 33.6 57 0.0012 34.9 4.4 44 113-161 93-138 (634)
321 PRK03333 coaE dephospho-CoA ki 33.6 37 0.0008 35.1 3.1 20 133-152 2-23 (395)
322 TIGR02322 phosphon_PhnN phosph 33.4 41 0.00088 30.1 3.1 23 133-155 2-26 (179)
323 cd03223 ABCD_peroxisomal_ALDP 33.4 34 0.00074 30.3 2.5 25 132-156 27-53 (166)
324 COG5271 MDN1 AAA ATPase contai 33.3 55 0.0012 40.2 4.5 40 113-154 449-488 (4600)
325 PRK13886 conjugal transfer pro 33.0 44 0.00095 31.9 3.3 27 137-163 10-36 (241)
326 PF00580 UvrD-helicase: UvrD/R 32.8 35 0.00077 33.2 2.8 28 129-157 13-41 (315)
327 TIGR00640 acid_CoA_mut_C methy 32.8 2.4E+02 0.0052 24.1 7.5 61 368-438 65-125 (132)
328 PRK00300 gmk guanylate kinase; 32.8 40 0.00088 30.8 3.0 24 131-154 4-29 (205)
329 cd03229 ABC_Class3 This class 32.8 32 0.0007 30.9 2.3 30 132-161 26-57 (178)
330 COG1341 Predicted GTPase or GT 32.8 1.2E+02 0.0026 31.2 6.4 50 113-162 51-105 (398)
331 PRK08181 transposase; Validate 32.7 86 0.0019 30.5 5.4 48 114-163 92-139 (269)
332 PF12780 AAA_8: P-loop contain 32.4 27 0.00059 33.9 1.8 53 101-162 8-60 (268)
333 COG3367 Uncharacterized conser 32.4 58 0.0013 32.4 4.0 79 76-162 88-181 (339)
334 PRK13768 GTPase; Provisional 32.2 50 0.0011 31.7 3.6 29 134-162 4-34 (253)
335 cd04236 AAK_NAGS-Urea AAK_NAGS 32.2 1.1E+02 0.0025 29.7 6.1 65 325-395 8-76 (271)
336 PLN02759 Formate--tetrahydrofo 32.1 60 0.0013 35.1 4.3 33 130-162 67-106 (637)
337 PRK13505 formate--tetrahydrofo 31.8 68 0.0015 34.4 4.7 32 131-162 54-91 (557)
338 cd00886 MogA_MoaB MogA_MoaB fa 31.8 1.9E+02 0.004 25.3 6.9 11 463-473 61-71 (152)
339 COG0761 lytB 4-Hydroxy-3-methy 31.8 1.6E+02 0.0034 28.9 6.7 53 428-483 172-236 (294)
340 cd02038 FleN-like FleN is a me 31.4 55 0.0012 28.1 3.4 51 134-194 4-54 (139)
341 PRK05537 bifunctional sulfate 31.4 92 0.002 33.9 5.8 41 116-156 376-418 (568)
342 cd03113 CTGs CTP synthetase (C 31.3 74 0.0016 30.5 4.4 56 134-193 2-63 (255)
343 PF13476 AAA_23: AAA domain; P 31.3 44 0.00095 30.0 3.0 25 131-155 18-44 (202)
344 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.2 39 0.00084 31.3 2.6 24 132-155 30-55 (218)
345 PRK06526 transposase; Provisio 30.9 71 0.0015 30.8 4.4 44 117-162 85-130 (254)
346 COG0455 flhG Antiactivator of 30.8 58 0.0013 31.6 3.8 28 133-161 3-34 (262)
347 PF00005 ABC_tran: ABC transpo 30.7 42 0.0009 28.3 2.6 25 132-156 11-37 (137)
348 PF12846 AAA_10: AAA-like doma 30.7 44 0.00096 32.2 3.1 29 133-162 5-33 (304)
349 TIGR00336 pyrE orotate phospho 30.6 70 0.0015 28.7 4.1 28 356-384 108-135 (173)
350 TIGR01360 aden_kin_iso1 adenyl 30.4 57 0.0012 29.1 3.5 23 132-154 3-27 (188)
351 PF02492 cobW: CobW/HypB/UreG, 30.3 2.3E+02 0.005 25.3 7.5 29 133-162 1-31 (178)
352 PRK13889 conjugal transfer rel 30.2 52 0.0011 38.2 3.8 30 134-163 364-395 (988)
353 PRK10436 hypothetical protein; 30.2 58 0.0013 34.4 3.9 21 133-153 219-242 (462)
354 cd03465 URO-D_like The URO-D _ 30.0 3.4E+02 0.0073 26.8 9.4 53 202-254 257-310 (330)
355 KOG0635 Adenosine 5'-phosphosu 30.0 1.2E+02 0.0026 26.9 5.1 44 130-174 29-74 (207)
356 PRK07078 hypothetical protein; 29.9 81 0.0017 35.6 5.2 43 111-154 469-515 (759)
357 cd01674 Homoaconitase_Swivel H 29.7 1.1E+02 0.0023 26.2 4.6 51 53-107 40-100 (129)
358 COG0504 PyrG CTP synthase (UTP 29.7 65 0.0014 33.9 4.0 30 133-162 2-35 (533)
359 PF06415 iPGM_N: BPG-independe 29.7 4.9E+02 0.011 24.6 12.0 140 333-485 13-190 (223)
360 PRK05569 flavodoxin; Provision 29.6 1.7E+02 0.0036 24.9 6.2 51 366-419 59-112 (141)
361 PRK01215 competence damage-ind 29.6 3.7E+02 0.0081 26.0 9.2 20 462-481 61-80 (264)
362 COG1131 CcmA ABC-type multidru 29.4 37 0.00079 33.5 2.2 29 132-160 31-61 (293)
363 PRK14010 potassium-transportin 29.4 3E+02 0.0065 30.7 9.4 72 402-473 441-512 (673)
364 PF02374 ArsA_ATPase: Anion-tr 29.4 53 0.0011 32.6 3.3 25 138-162 9-33 (305)
365 cd03283 ABC_MutS-like MutS-lik 29.3 58 0.0013 30.0 3.4 29 133-161 26-58 (199)
366 PTZ00386 formyl tetrahydrofola 29.3 65 0.0014 34.7 4.0 33 130-162 66-105 (625)
367 PF13555 AAA_29: P-loop contai 29.2 79 0.0017 23.3 3.4 22 133-154 24-47 (62)
368 cd03226 ABC_cobalt_CbiO_domain 28.9 40 0.00087 30.9 2.3 24 132-155 26-51 (205)
369 TIGR01743 purR_Bsub pur operon 28.8 66 0.0014 31.3 3.7 65 319-384 140-221 (268)
370 PRK08903 DnaA regulatory inact 28.8 79 0.0017 29.5 4.3 47 115-162 26-74 (227)
371 cd03259 ABC_Carb_Solutes_like 28.7 42 0.00091 31.0 2.4 24 132-155 26-51 (213)
372 TIGR01420 pilT_fam pilus retra 28.7 1.9E+02 0.0042 29.1 7.3 23 132-154 122-146 (343)
373 PRK13826 Dtr system oriT relax 28.6 58 0.0013 38.2 3.8 31 133-163 398-430 (1102)
374 PRK13537 nodulation ABC transp 28.3 39 0.00084 33.5 2.2 25 132-156 33-59 (306)
375 PLN02318 phosphoribulokinase/u 28.2 56 0.0012 35.6 3.4 24 131-154 64-89 (656)
376 cd03222 ABC_RNaseL_inhibitor T 28.2 47 0.001 30.1 2.5 31 131-161 24-56 (177)
377 cd07395 MPP_CSTP1 Homo sapiens 28.1 1.8E+02 0.0039 27.7 6.8 62 366-427 29-95 (262)
378 PRK01184 hypothetical protein; 28.0 79 0.0017 28.3 4.0 27 133-163 2-30 (184)
379 cd07421 MPP_Rhilphs Rhilph pho 27.9 2.8E+02 0.0061 27.5 7.9 49 359-408 4-56 (304)
380 PRK05793 amidophosphoribosyltr 27.7 2.7E+02 0.0059 29.5 8.4 87 357-457 354-440 (469)
381 PF00437 T2SE: Type II/IV secr 27.6 53 0.0011 31.6 3.0 29 133-161 128-158 (270)
382 COG2242 CobL Precorrin-6B meth 27.5 4.8E+02 0.01 23.9 10.4 79 403-485 67-149 (187)
383 PRK08190 bifunctional enoyl-Co 27.5 4.3E+02 0.0093 27.9 9.9 93 370-472 161-258 (466)
384 PRK15177 Vi polysaccharide exp 27.4 49 0.0011 30.8 2.6 24 132-155 13-38 (213)
385 COG0540 PyrB Aspartate carbamo 27.3 6E+02 0.013 25.3 10.0 64 386-456 157-224 (316)
386 COG2087 CobU Adenosyl cobinami 27.3 3.2E+02 0.0069 24.6 7.4 50 422-471 30-83 (175)
387 PRK00131 aroK shikimate kinase 27.2 73 0.0016 27.9 3.6 23 132-154 4-28 (175)
388 PRK08118 topology modulation p 27.2 69 0.0015 28.5 3.4 21 134-154 3-25 (167)
389 COG1066 Sms Predicted ATP-depe 27.2 1.9E+02 0.004 30.1 6.7 113 131-247 92-211 (456)
390 TIGR00486 YbgI_SA1388 dinuclea 27.1 1.9E+02 0.0042 27.6 6.7 64 27-97 1-68 (249)
391 PRK07231 fabG 3-ketoacyl-(acyl 27.1 2.2E+02 0.0048 26.4 7.2 33 131-165 4-36 (251)
392 cd03294 ABC_Pro_Gly_Bertaine T 27.0 46 0.001 32.2 2.4 24 132-155 50-75 (269)
393 PRK08154 anaerobic benzoate ca 26.8 1.1E+02 0.0024 30.3 5.2 35 124-162 126-162 (309)
394 COG1926 Predicted phosphoribos 26.8 1.6E+02 0.0036 27.4 5.7 56 357-425 125-180 (220)
395 PRK06217 hypothetical protein; 26.8 62 0.0013 29.1 3.1 21 134-154 3-25 (183)
396 TIGR01166 cbiO cobalt transpor 26.7 45 0.00098 30.1 2.2 24 132-155 18-43 (190)
397 PRK06278 cobyrinic acid a,c-di 26.7 70 0.0015 33.9 3.8 27 131-157 237-266 (476)
398 PF03266 NTPase_1: NTPase; In 26.6 90 0.002 27.9 4.0 28 135-162 2-31 (168)
399 PRK07261 topology modulation p 26.6 67 0.0014 28.7 3.2 20 135-154 3-24 (171)
400 COG0188 GyrA Type IIA topoisom 26.5 25 0.00054 39.5 0.5 35 1-39 178-215 (804)
401 KOG0447 Dynamin-like GTP bindi 26.4 54 0.0012 35.0 2.8 24 130-153 306-331 (980)
402 PRK06835 DNA replication prote 26.3 1.3E+02 0.0028 30.3 5.5 31 132-163 186-216 (329)
403 PRK13540 cytochrome c biogenes 26.2 54 0.0012 30.0 2.6 25 131-155 26-52 (200)
404 cd07388 MPP_Tt1561 Thermus the 26.2 5.5E+02 0.012 24.1 9.4 68 358-429 6-73 (224)
405 PRK13812 orotate phosphoribosy 26.1 81 0.0018 28.5 3.7 64 319-384 70-134 (176)
406 COG1832 Predicted CoA-binding 26.1 2.8E+02 0.006 24.1 6.6 58 132-189 16-78 (140)
407 cd00885 cinA Competence-damage 26.1 3.5E+02 0.0077 24.1 7.8 13 462-474 57-69 (170)
408 cd07388 MPP_Tt1561 Thermus the 26.0 3.3E+02 0.0072 25.6 7.9 37 388-428 5-41 (224)
409 COG1102 Cmk Cytidylate kinase 26.0 90 0.002 28.0 3.7 26 134-162 2-29 (179)
410 cd00550 ArsA_ATPase Oxyanion-t 26.0 55 0.0012 31.4 2.7 25 138-162 8-32 (254)
411 PRK03092 ribose-phosphate pyro 25.9 6.5E+02 0.014 24.9 12.2 108 323-434 3-122 (304)
412 COG1407 Predicted ICC-like pho 25.6 1.2E+02 0.0025 28.9 4.7 69 403-482 48-116 (235)
413 PRK10247 putative ABC transpor 25.6 62 0.0013 30.3 2.9 24 132-155 33-58 (225)
414 cd03274 ABC_SMC4_euk Eukaryoti 25.6 86 0.0019 29.2 3.9 23 132-154 25-49 (212)
415 PRK01122 potassium-transportin 25.6 4.9E+02 0.011 29.1 10.2 74 402-475 445-518 (679)
416 PRK00553 ribose-phosphate pyro 25.4 1.9E+02 0.0042 29.0 6.6 67 357-429 219-285 (332)
417 PRK13975 thymidylate kinase; P 25.4 72 0.0016 28.8 3.3 23 133-155 3-27 (196)
418 PRK04296 thymidine kinase; Pro 25.3 1.2E+02 0.0025 27.7 4.6 31 133-163 3-35 (190)
419 PRK09213 pur operon repressor; 25.2 58 0.0013 31.7 2.7 65 319-384 142-223 (271)
420 smart00053 DYNc Dynamin, GTPas 25.2 1.2E+02 0.0026 29.0 4.8 25 129-153 23-49 (240)
421 COG1737 RpiR Transcriptional r 25.2 5.7E+02 0.012 24.8 9.7 18 465-482 206-223 (281)
422 PRK12727 flagellar biosynthesi 25.1 6.3E+02 0.014 27.4 10.4 31 132-162 350-384 (559)
423 cd03278 ABC_SMC_barmotin Barmo 25.0 69 0.0015 29.4 3.1 21 134-154 24-46 (197)
424 PRK06197 short chain dehydroge 25.0 2.2E+02 0.0047 27.8 6.9 33 129-163 13-45 (306)
425 PRK05854 short chain dehydroge 24.9 2.1E+02 0.0046 28.1 6.8 73 129-203 11-83 (313)
426 COG0329 DapA Dihydrodipicolina 24.8 3.4E+02 0.0074 26.8 8.1 99 369-469 23-135 (299)
427 PRK11248 tauB taurine transpor 24.6 54 0.0012 31.4 2.4 24 132-155 27-52 (255)
428 TIGR01313 therm_gnt_kin carboh 24.6 53 0.0011 28.8 2.1 19 136-154 2-22 (163)
429 cd03272 ABC_SMC3_euk Eukaryoti 24.6 83 0.0018 29.6 3.7 23 132-154 23-47 (243)
430 PRK13947 shikimate kinase; Pro 24.6 80 0.0017 27.8 3.4 21 134-154 3-25 (171)
431 PTZ00145 phosphoribosylpyropho 24.5 8.2E+02 0.018 25.7 11.0 114 319-436 129-254 (439)
432 cd03263 ABC_subfamily_A The AB 24.4 56 0.0012 30.3 2.4 24 132-155 28-53 (220)
433 PRK13976 thymidylate kinase; P 24.4 78 0.0017 29.4 3.3 22 141-162 11-34 (209)
434 PRK13652 cbiO cobalt transport 24.4 52 0.0011 32.0 2.2 24 132-155 30-55 (277)
435 cd03240 ABC_Rad50 The catalyti 24.3 86 0.0019 28.9 3.6 24 131-154 21-46 (204)
436 COG0678 AHP1 Peroxiredoxin [Po 24.3 2.8E+02 0.0061 24.5 6.3 74 382-459 33-115 (165)
437 COG4080 SpoU rRNA Methylase fa 24.2 2.5E+02 0.0055 24.3 5.9 103 368-478 8-112 (147)
438 TIGR03608 L_ocin_972_ABC putat 24.2 60 0.0013 29.6 2.5 24 132-155 24-49 (206)
439 cd01131 PilT Pilus retraction 24.1 1.1E+02 0.0024 28.0 4.3 21 134-154 3-25 (198)
440 PRK09968 serine/threonine-spec 24.1 5.1E+02 0.011 24.0 8.8 80 349-436 5-86 (218)
441 PF02423 OCD_Mu_crystall: Orni 24.1 6.2E+02 0.013 25.1 9.9 122 348-479 86-232 (313)
442 PRK04452 acetyl-CoA decarbonyl 24.0 3.6E+02 0.0078 27.0 8.0 60 369-440 138-200 (319)
443 KOG3220 Similar to bacterial d 24.0 73 0.0016 29.6 2.9 26 133-162 2-29 (225)
444 cd03293 ABC_NrtD_SsuB_transpor 24.0 52 0.0011 30.5 2.1 24 132-155 30-55 (220)
445 PRK13946 shikimate kinase; Pro 23.9 83 0.0018 28.4 3.4 23 132-154 10-34 (184)
446 PRK10463 hydrogenase nickel in 23.8 2.2E+02 0.0047 28.1 6.4 42 113-154 83-128 (290)
447 TIGR02173 cyt_kin_arch cytidyl 23.7 74 0.0016 27.9 3.0 21 134-154 2-24 (171)
448 PRK09825 idnK D-gluconate kina 23.7 86 0.0019 28.2 3.4 22 133-154 4-27 (176)
449 KOG2183 Prolylcarboxypeptidase 23.7 3.5E+02 0.0076 28.1 7.8 96 48-160 68-189 (492)
450 cd02035 ArsA ArsA ATPase funct 23.7 89 0.0019 29.1 3.6 25 138-162 7-31 (217)
451 PRK12724 flagellar biosynthesi 23.6 1.2E+02 0.0027 31.6 4.8 31 132-162 223-256 (432)
452 TIGR00073 hypB hydrogenase acc 23.6 2.2E+02 0.0049 26.0 6.3 26 129-154 19-46 (207)
453 cd03265 ABC_DrrA DrrA is the A 23.6 62 0.0013 30.0 2.5 24 132-155 26-51 (220)
454 cd03256 ABC_PhnC_transporter A 23.5 66 0.0014 30.2 2.7 24 132-155 27-52 (241)
455 COG4586 ABC-type uncharacteriz 23.5 60 0.0013 31.7 2.3 30 132-161 50-81 (325)
456 PF00994 MoCF_biosynth: Probab 23.4 2E+02 0.0043 24.7 5.5 28 448-475 41-68 (144)
457 cd03225 ABC_cobalt_CbiO_domain 23.4 63 0.0014 29.7 2.5 24 132-155 27-52 (211)
458 cd06182 CYPOR_like NADPH cytoc 23.4 6.4E+02 0.014 24.2 9.7 49 346-395 103-156 (267)
459 PRK05568 flavodoxin; Provision 23.3 2.1E+02 0.0045 24.3 5.6 45 370-418 66-110 (142)
460 PRK09493 glnQ glutamine ABC tr 23.3 62 0.0013 30.5 2.5 24 132-155 27-52 (240)
461 TIGR01650 PD_CobS cobaltochela 23.3 1.1E+02 0.0024 30.6 4.3 24 131-155 66-89 (327)
462 COG1105 FruK Fructose-1-phosph 23.3 1.4E+02 0.003 29.7 4.9 35 448-482 114-150 (310)
463 PF00106 adh_short: short chai 23.3 4.5E+02 0.0098 22.4 8.0 75 388-470 1-87 (167)
464 PF07931 CPT: Chloramphenicol 23.2 49 0.0011 29.9 1.6 21 134-154 3-25 (174)
465 COG0673 MviM Predicted dehydro 23.2 3.7E+02 0.0079 26.5 8.2 86 388-485 4-89 (342)
466 cd07421 MPP_Rhilphs Rhilph pho 23.0 6.9E+02 0.015 24.8 9.6 8 474-481 215-222 (304)
467 PF13380 CoA_binding_2: CoA bi 23.0 2.2E+02 0.0048 23.6 5.5 61 133-193 1-64 (116)
468 cd03281 ABC_MSH5_euk MutS5 hom 23.0 1.1E+02 0.0024 28.4 4.1 29 133-161 30-62 (213)
469 PRK13650 cbiO cobalt transport 22.9 66 0.0014 31.3 2.6 25 132-156 33-59 (279)
470 PRK06827 phosphoribosylpyropho 22.8 6.6E+02 0.014 25.8 9.8 143 318-470 17-213 (382)
471 cd03237 ABC_RNaseL_inhibitor_d 22.7 64 0.0014 30.8 2.5 24 132-155 25-50 (246)
472 cd03231 ABC_CcmA_heme_exporter 22.7 61 0.0013 29.7 2.2 24 132-155 26-51 (201)
473 PRK02228 V-type ATP synthase s 22.6 4.1E+02 0.009 21.4 7.4 33 450-482 58-91 (100)
474 PRK10908 cell division protein 22.6 59 0.0013 30.2 2.1 24 132-155 28-53 (222)
475 cd03221 ABCF_EF-3 ABCF_EF-3 E 22.6 65 0.0014 27.8 2.3 24 132-155 26-51 (144)
476 COG1474 CDC6 Cdc6-related prot 22.6 1.1E+02 0.0024 31.2 4.3 23 134-157 47-69 (366)
477 cd02020 CMPK Cytidine monophos 22.6 77 0.0017 26.8 2.8 21 134-154 1-23 (147)
478 TIGR02673 FtsE cell division A 22.6 66 0.0014 29.6 2.5 24 132-155 28-53 (214)
479 cd03253 ABCC_ATM1_transporter 22.5 74 0.0016 29.8 2.8 24 132-155 27-52 (236)
480 COG2805 PilT Tfp pilus assembl 22.5 4.1E+02 0.0088 26.6 7.7 38 387-427 125-162 (353)
481 COG2019 AdkA Archaeal adenylat 22.5 96 0.0021 28.0 3.2 22 311-332 143-164 (189)
482 KOG3062 RNA polymerase II elon 22.4 1.1E+02 0.0023 29.1 3.6 29 132-160 1-31 (281)
483 PRK13625 bis(5'-nucleosyl)-tet 22.4 6.7E+02 0.014 23.7 9.6 75 359-436 3-84 (245)
484 PF05872 DUF853: Bacterial pro 22.4 63 0.0014 33.8 2.4 30 132-162 22-51 (502)
485 TIGR01497 kdpB K+-transporting 22.4 7.4E+02 0.016 27.6 10.8 76 402-477 446-521 (675)
486 PRK10584 putative ABC transpor 22.3 71 0.0015 29.8 2.7 24 132-155 36-61 (228)
487 COG4608 AppF ABC-type oligopep 22.1 56 0.0012 31.7 1.9 31 132-162 39-71 (268)
488 TIGR00337 PyrG CTP synthase. C 22.0 1.2E+02 0.0026 32.5 4.4 30 133-162 2-35 (525)
489 PRK06756 flavodoxin; Provision 22.0 4E+02 0.0087 22.7 7.3 51 369-419 65-115 (148)
490 cd03250 ABCC_MRP_domain1 Domai 22.0 75 0.0016 29.1 2.7 24 132-155 31-56 (204)
491 PF09565 RE_NgoFVII: NgoFVII r 21.9 5E+02 0.011 25.6 8.5 70 353-426 5-77 (296)
492 PRK13538 cytochrome c biogenes 21.8 71 0.0015 29.3 2.5 24 132-155 27-52 (204)
493 PLN02235 ATP citrate (pro-S)-l 21.8 9.3E+02 0.02 25.2 11.4 97 359-460 299-418 (423)
494 PRK04182 cytidylate kinase; Pr 21.8 83 0.0018 27.7 2.9 21 134-154 2-24 (180)
495 cd03269 ABC_putative_ATPase Th 21.8 66 0.0014 29.6 2.3 24 132-155 26-51 (210)
496 cd03232 ABC_PDR_domain2 The pl 21.8 87 0.0019 28.4 3.1 23 132-154 33-57 (192)
497 TIGR00960 3a0501s02 Type II (G 21.7 65 0.0014 29.8 2.2 24 132-155 29-54 (216)
498 cd03300 ABC_PotA_N PotA is an 21.7 67 0.0015 30.1 2.4 25 132-156 26-52 (232)
499 COG0126 Pgk 3-phosphoglycerate 21.7 3.1E+02 0.0067 28.2 7.0 67 371-437 36-107 (395)
500 PF00142 Fer4_NifH: 4Fe-4S iro 21.7 86 0.0019 30.4 3.0 24 139-162 9-32 (273)
No 1
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.1e-89 Score=696.02 Aligned_cols=444 Identities=37% Similarity=0.569 Sum_probs=411.1
Q ss_pred ccCHHHHHHHhCCeeccCC--CCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCcc-
Q 011395 26 IWTINEIAESVNGKILKWG--PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKG- 102 (487)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~--~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~- 102 (487)
+|++.+++.++++.+.+.. .+++|++|||.+.| |++|+|++|++||||+|+++|++ +||.+++++++...+..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Dsr~v~~--g~lF~al~G~~~Dgh~fi~~A~~-~GA~a~~v~r~~~~~~~~~ 78 (451)
T COG0770 2 LLTLDELADILGGALVGADPVVVSGVSIDSRKVKP--GDLFVALKGERFDGHDFIEQALA-AGAAAVLVARPVLPPAIPL 78 (451)
T ss_pred cccHHHHHHHhCCccccCcccceeeEEeecccCCC--CceeEEccCccccccchHHHHHh-cCCEEEEEecCcCCccccc
Confidence 5899999999999887655 38999999999999 99999999999999999999999 999999999987655556
Q ss_pred -EEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcC
Q 011395 103 -FVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI 181 (487)
Q Consensus 103 -~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~ 181 (487)
++.|. |+++||++|+.++++ ..+.++|+||||+|||||++|++++| +..++|++|.|||||++|+|++++++
T Consensus 79 ~~~~V~-----d~~~al~~la~~~~~-~~~~kvIaITGS~GKTTTKe~la~iL-~~~~~v~~t~gn~Nn~iGlPltll~~ 151 (451)
T COG0770 79 VVLLVL-----DTLEALGKLAKAYRQ-KFNAKVIAITGSNGKTTTKEMLAAIL-STKGKVHATPGNFNNEIGLPLTLLRL 151 (451)
T ss_pred ceEEeH-----HHHHHHHHHHHHHHH-hcCCcEEEEeCCCCcHHHHHHHHHHH-hhcCeEecCCCccCccccchhHHHhC
Confidence 89999 999999999999999 88999999999999999999999999 56789999999999999999999999
Q ss_pred CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhc
Q 011395 182 DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT 261 (487)
Q Consensus 182 ~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~ 261 (487)
..++|++|+|||+++.|+|..++++++||++|||||+.+|+++|||.|+++++|.+|+.+++++|++|+|.|++....+.
T Consensus 152 ~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~ 231 (451)
T COG0770 152 PADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWA 231 (451)
T ss_pred CCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred CC-CCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHh
Q 011395 262 VP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340 (487)
Q Consensus 262 ~~-~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L 340 (487)
.+ ...++++||.+..+|+++.+ +.....+.+|++...+....+.+|++|+||+.|+++|+++|+.+|+++++|+++|
T Consensus 232 ~~~~~~~v~~fg~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L 309 (451)
T COG0770 232 AKIGNAKVLSFGLNNGGDFRATN--IHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGL 309 (451)
T ss_pred hhcCCCcEEEEcCCCCCceeeEE--EEEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 23789999987567999999 9998888999998763333899999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCC
Q 011395 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACID 420 (487)
Q Consensus 341 ~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d 420 (487)
+.+++++||+|.+...++.++|||+||+||+||+++++.+..++ .++.|+|+|+|.|+|+.+.+.|+++++.+...++|
T Consensus 310 ~~~~~~~gR~~~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~-~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d 388 (451)
T COG0770 310 KELKPVKGRLEVILLANGKTLIDDSYNANPDSMRAALDLLAALP-GRKGIAVLGDMLELGEESEELHEEVGEYAVEAGID 388 (451)
T ss_pred HhcCCCCccceeEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCc-cCCcEEEeCChhhhCccHHHHHHHHHHHHHhcCce
Confidence 99999999999666668999999999999999999999999988 34449999999999999999999999999998899
Q ss_pred EEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHHh
Q 011395 421 LIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIKA 486 (487)
Q Consensus 421 ~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~~ 486 (487)
.++++|+..+.+.+.+.. ...+|.+.+++++.+.+.++++|+|||||||++.||++++.|+.
T Consensus 389 ~v~~~G~~~~~i~~~~~~----~~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr~~~le~vv~~l~~ 450 (451)
T COG0770 389 LVFLVGELSKAIAEALGN----KGIYFADKEELITSLKALLRKGDVVLVKGSRGMKLEKVVDALLG 450 (451)
T ss_pred EEEEEccchHHHHHhcCC----CeEecCCHHHHHHHHHHhcCCCCEEEEEcCccccHHHHHHHHhc
Confidence 999999999999988742 27789999999999999999999999999999999999999864
No 2
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=5.1e-86 Score=694.16 Aligned_cols=447 Identities=32% Similarity=0.458 Sum_probs=391.8
Q ss_pred CccCHHHHHHHhCCeeccC--CCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC--C-C
Q 011395 25 PIWTINEIAESVNGKILKW--GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--N-W 99 (487)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~--~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~--~-~ 99 (487)
++|+++||++.++|.+.+. ..+++|++|||.|+| |+||||++|+++|||+|+++|++ +||+++|++++.. . .
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~~~~i~~i~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~~v~~~~~~~~~~~ 81 (479)
T PRK14093 5 PLWTSDAMAEAMGATRSGALPRDVTGISIDSRTLAP--GDAYFAIKGDVHDGHAFVAAALK-AGAALAVVERAQRDKFAA 81 (479)
T ss_pred CccCHHHHHHHhCCeecCCCCCceeEEEeecCCCCC--CCEEEEeccCcCChHHHHHHHHH-cCCcEEEEecccccccCC
Confidence 4689999999999986532 249999999999999 99999999999999999999999 9999999987421 1 2
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhh
Q 011395 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (487)
Q Consensus 100 ~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~ 179 (487)
++|+++|+ |++++|+.||++++. .++.++||||||||||||++||+++|+..|. +..+.|++|+.+|.|++++
T Consensus 82 ~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~-~~~~~g~~n~~iG~p~~l~ 154 (479)
T PRK14093 82 DAPLLVVD-----DVLAALRDLGRAARA-RLEAKVIAVTGSVGKTSTKEALRGVLGAQGE-THASVASFNNHWGVPLSLA 154 (479)
T ss_pred CCCEEEEC-----CHHHHHHHHHHHHHH-hcCCCEEEEcCCCCccHHHHHHHHHHHhcCC-ccCCCccCCCccchhHHHH
Confidence 58999999 999999999997776 6788999999999999999999999976664 5568999999999999999
Q ss_pred cCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHh
Q 011395 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (487)
Q Consensus 180 ~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~ 259 (487)
++..+++++|+|+|+++.+++..+...++||++|||||++||+++|+|+|+|+++|.+||+.+++++.+|+|.|||+...
T Consensus 155 ~~~~~~~~~V~E~g~s~~~e~~~~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~ 234 (479)
T PRK14093 155 RCPADARFAVFEIGMNHAGEIEPLVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDR 234 (479)
T ss_pred cCCCCCcEEEEEeCCCCCchHHHHhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHH
Confidence 88888999999999999999888888899999999999999999999999999999999998888899999999998877
Q ss_pred hcC--C-CC-CcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHH
Q 011395 260 LTV--P-RG-VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335 (487)
Q Consensus 260 ~~~--~-~~-~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~ 335 (487)
+.. . .+ .++++||.+..+++++.+ +.....+..|.+...+....++++++|.||++|+++|++++..+|+++++
T Consensus 235 l~~~~~~~~~~~vi~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~ 312 (479)
T PRK14093 235 LAASARAAGIARIVSFGADEKADARLLD--VALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELAGADLAL 312 (479)
T ss_pred HHHHhhhccCCcEEEEeCCCCccEEEEE--EEEcCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 651 1 11 268899976667888877 76666666676654322237899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeEEee---cCCeEEEEecCCCCHHHHHHHHHHHHccc--cCCcEEEEEcCCCCCCcccHHHHHHH
Q 011395 336 VGISLSNFSPVQMRSELLVS---RSGIKIVNDAYNANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEKI 410 (487)
Q Consensus 336 i~~~L~~~~~~~gR~e~~~~---~~~~~ii~Dsya~np~s~~~~l~~l~~~~--~~~~~i~Vlg~m~e~G~~~~~~~~~~ 410 (487)
|+++|++|+|++|||+.++. .++.+||||||||||+||+++|++++++. +.+|+|+|||+|.|+|.++.+.|+++
T Consensus 313 i~~~l~~~~~~~gR~~~~r~~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~ 392 (479)
T PRK14093 313 AALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGL 392 (479)
T ss_pred HHHHHHhCCCcCCcceEEEeecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHH
Confidence 99999999999999998753 34589999999999999999999999874 24789999999999999999999999
Q ss_pred HHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHH
Q 011395 411 LSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 411 ~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
++.+.+..+|.|+++|+..+.+.+.+... . ...++++.+++.+++.+.+++||+||+||||+++||++++.|+
T Consensus 393 ~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~gd~vL~kGSr~~~le~i~~~l~ 465 (479)
T PRK14093 393 AEAIRANAIDLVFCCGPLMRNLWDALSSG-K-RGGYAEDAAALESQVVAAIRAGDVIMVKGSLGSRMKTIVTALE 465 (479)
T ss_pred HHHHHHcCCCEEEEEchhHHHHHHhhccc-c-cceeeCCHHHHHHHHHHhcCCCCEEEEEcCCcCCHHHHHHHHH
Confidence 99999877999999999888887765322 1 1246899999999999999999999999999999999999885
No 3
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=6.9e-86 Score=689.01 Aligned_cols=438 Identities=31% Similarity=0.418 Sum_probs=389.2
Q ss_pred cCHHHHHHHhCCeeccC-CCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEE
Q 011395 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~ 105 (487)
|+++||++.+++.+.+. ..+++|++|||.|+| |+||||+||+++|||+|+++|++ +||.++|++++.+ ++.|+++
T Consensus 4 ~~~~~l~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (453)
T PRK10773 4 VTLSQLADILNGELQGADITIDAVTTDTRKVTP--GCLFVALKGERFDAHDFADDAKA-AGAGALLVSRPLD-IDLPQLV 79 (453)
T ss_pred CCHHHHHHHhCCcccCCCeeeeEEEeeCCCCCC--CcEEEEecCCCCCHHHHHHHHHH-CCCeEEEEecCcC-CCCCEEE
Confidence 79999999999875432 238999999999999 99999999999999999999999 9999999998643 3679999
Q ss_pred EcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCC
Q 011395 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (487)
Q Consensus 106 V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~ 185 (487)
|+ |++++|+.|+.+++. .++.++||||||||||||++||+++|+..|. +..+.||+|+.+|.|+++++..+++
T Consensus 80 v~-----d~~~al~~la~~~~~-~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~-~~~t~gn~n~~~G~~~~~~~~~~~~ 152 (453)
T PRK10773 80 VK-----DTRLAFGQLAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILRQCGN-TLYTAGNLNNDIGVPLTLLRLTPEH 152 (453)
T ss_pred EC-----CHHHHHHHHHHHHHh-cCCCCEEEEcCCCchHHHHHHHHHHHHhcCc-ccccCccccCCcccccHHhcCCCCC
Confidence 99 999999999997766 6668999999999999999999999976664 5679999999999999988888899
Q ss_pred cEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC-CC
Q 011395 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PR 264 (487)
Q Consensus 186 ~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~-~~ 264 (487)
+++|+|+|+++.++++++...++|+++|||||++||+++|||+|+|+++|.+||+.+++++.+|+|.|||+...+.. ..
T Consensus 153 ~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~~~~ 232 (453)
T PRK10773 153 DYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQSVIG 232 (453)
T ss_pred cEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHHHhc
Confidence 99999999988899998889999999999999999999999999999999999999888999999999998766551 11
Q ss_pred CCcEEEEeCCC--CceEEEEeceEEecCCeEEEEEeec-ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 011395 265 GVRKVFFGWRR--GCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (487)
Q Consensus 265 ~~~vi~~g~~~--~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~ 341 (487)
..++++||... .+|+++.+ +.....+..|.+... +.. ++.+|++|.||++|+++|++++..+|+++++|+++|+
T Consensus 233 ~~~~~~~g~~~~~~~d~~~~~--i~~~~~~~~f~~~~~~~~~-~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~ 309 (453)
T PRK10773 233 SKTVWRFSPNAANSVDFTATN--IHVTSHGTEFTLHTPTGSV-DVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLA 309 (453)
T ss_pred CCcEEEEeCCCCCcCcEEEEE--EEEeCCeeEEEEEecCceE-EEEecCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 13678899653 36888888 776667777877643 233 7899999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCE
Q 011395 342 NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL 421 (487)
Q Consensus 342 ~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~ 421 (487)
+|++++||||++...++.+||||||||||+||+++|+++++++ +|+++|||+|.|+|+++.+.|+++++.+...++|.
T Consensus 310 ~~~~~~gR~e~v~~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~--~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~ 387 (453)
T PRK10773 310 NLKAVPGRLFPIQLAEGQLLLDDSYNANVGSMTAAAQVLAEMP--GYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDK 387 (453)
T ss_pred hCCCCCCceeEEECCCCeEEEEcCCCCCHHHHHHHHHHHHhCC--CCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCE
Confidence 9999999999998657899999999999999999999999864 57899999999999999999999999999988999
Q ss_pred EEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCC--EEEEecCCCCcHHHHHHHHH
Q 011395 422 IGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSND--VVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 422 vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d--~vLv~GSr~~~~e~~~~~l~ 485 (487)
+|++|+.++.+.+.. +. ..+++|.+++.+.+...+++|| +||+||||++.||++++.|+
T Consensus 388 v~~~G~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~~~~gd~~~vL~Kgsr~~~le~i~~~l~ 448 (453)
T PRK10773 388 VLSVGKLSHAISEAS---GV--GEHFADKTALIARLKALLAEHQVITILVKGSRSAAMEEVVRALQ 448 (453)
T ss_pred EEEEChhHHHHHHhc---CC--CeeECCHHHHHHHHHHhhcCCCceEEEEEeCCcCCHHHHHHHHH
Confidence 999998888776642 11 1368999999999999999999 69999999999999999885
No 4
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=4.6e-84 Score=669.56 Aligned_cols=414 Identities=37% Similarity=0.574 Sum_probs=366.2
Q ss_pred eeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC-CCCccEEEEcCCCCccHHHHHHHHHHHHhhcC
Q 011395 51 TDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMACYARNSR 129 (487)
Q Consensus 51 ~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~-~~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~ 129 (487)
+|||.|+| |+||||+||+++|||+|+++|++ +||.++|++++.. ..++|+|+|+ |+++||+.||+.++. .
T Consensus 1 ~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~Ga~~~i~~~~~~~~~~~~~i~V~-----d~~~al~~la~~~~~-~ 71 (417)
T TIGR01143 1 TDSRAIKP--GDLFIALKGERFDGHDFVEQALA-AGAVAVLVDREVGPDNGLPQILVD-----DTLEALQALASAKRA-K 71 (417)
T ss_pred CCCCccCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEcccccCCCCCCEEEEC-----CHHHHHHHHHHHHHh-h
Confidence 59999999 99999999999999999999999 9999999997521 1267999999 999999999995555 5
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCC
Q 011395 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (487)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~p 209 (487)
.+.++||||||||||||++||+++|+..|. +..+.||+|+.+|.|.+++..+.+++++|+|+|+++.+++.+....++|
T Consensus 72 ~~~~vI~VTGTnGKTTt~~ll~~iL~~~g~-~~~t~gn~n~~ig~p~~~l~~~~~~~~~VlE~g~s~~g~~~~~~~~~~p 150 (417)
T TIGR01143 72 FSGKVIGITGSSGKTTTKEMLAAILSHKYK-VFATPGNFNNEIGLPLTLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKP 150 (417)
T ss_pred CCCCEEEEcCCCchhHHHHHHHHHHhccCc-EecCCCcCCCccchhHHHhcCCCCCeEEEEEeCCCCCCcHHHHhCccCC
Confidence 567999999999999999999999976664 7778999999999999998888899999999998888888888888999
Q ss_pred cEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCC-CCCcEEEEeCCCCceEEEEeceEEe
Q 011395 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLVAAQVAN 288 (487)
Q Consensus 210 dvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~d~~~~~~~i~~ 288 (487)
|++|||||++||+++|||+|+|+++|.+||+.+++++.+|+|.|||+...+... .++++++||.+. +++++.+ +..
T Consensus 151 ~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--i~~ 227 (417)
T TIGR01143 151 DIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEG-GDFSAAD--ISY 227 (417)
T ss_pred CEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCC-CcEEEEE--EEE
Confidence 999999999999999999999999999999998889999999999988776521 125688998754 6787777 766
Q ss_pred cCCe-EEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 011395 289 GGLG-VQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (487)
Q Consensus 289 ~~~~-~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (487)
...+ ..|++..++...+++++++|.||++|+++|++++..+|+++++|+++|++|++++||||+ ...+++.+||||||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~lGi~~~~i~~~l~~~~~~~gR~e~-~~~~~~~vidDsya 306 (417)
T TIGR01143 228 SALGSTGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFEI-QTKNGLTLIDDTYN 306 (417)
T ss_pred cCCCCEEEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceeE-EcCCCcEEEEcCCC
Confidence 5555 677775442223788999999999999999999999999999999999999999999995 44578999999999
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEE
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVT 447 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~ 447 (487)
|||+||+++|++++++. +|+++|+|+|.|+|++++..|++|++.+.+..+|.||++|++++.+.+.+. ....++
T Consensus 307 ~np~s~~~al~~l~~~~--~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~~~~~~~~~----~~~~~~ 380 (417)
T TIGR01143 307 ANPDSMRAALDALARFP--GKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEAAVIYDSLG----CKGFHF 380 (417)
T ss_pred CCHHHHHHHHHHHHhCC--CCEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHhcc----cCcEEE
Confidence 99999999999998765 689999999999999999999999999988767999999999988887653 124578
Q ss_pred CCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHH
Q 011395 448 NDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 448 ~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l 484 (487)
++.+++.+.+.+.+++||+||+||||+++||++++.|
T Consensus 381 ~~~~~~~~~l~~~~~~~d~VLlkGSr~~~le~~~~~~ 417 (417)
T TIGR01143 381 ADKDELLAFLKLELGEGDVVLVKGSRSVKLEKVVEAL 417 (417)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEEeCCcCcHHHHHhhC
Confidence 9999999999999999999999999999999999864
No 5
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2e-79 Score=682.74 Aligned_cols=442 Identities=24% Similarity=0.372 Sum_probs=389.2
Q ss_pred cCHHHHHHHhCCeeccC--CCCCeEEeeCCcc--ccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC----C
Q 011395 27 WTINEIAESVNGKILKW--GPPGIICTDTRIL--APNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN----N 98 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~--~~~~~i~~dsr~v--~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~----~ 98 (487)
|++.+|.+.+++.+... ..|++|++|||.| +| |+||||+||+++|||+|+++|++ +||.++|++++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~i~~i~~DSR~v~~~~--g~lFval~G~~~DGh~fi~~A~~-~GA~~iv~~~~~~~~~~~ 79 (822)
T PRK11930 3 YTLESISGILGAEGLGDKDAIIDQILTDSRSLSFPE--NTLFFALKGERNDGHRYIQELYE-KGVRNFVVSEEKHPEESY 79 (822)
T ss_pred ccHHHHHHHhCCeeccCCCceeCEEEecCCccCCCC--CcEEEEeCCCCCCHHHHHHHHHH-CCCEEEEEeccccccccC
Confidence 78999999999876542 2389999999999 99 99999999999999999999999 9999999976321 1
Q ss_pred CCccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHh
Q 011395 99 WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL 178 (487)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l 178 (487)
.++|++.|+ |+++||+.||++++. +++.++||||||||||||++||+++| +..+++..+.+|+|+.+|+|.++
T Consensus 80 ~~~~~i~V~-----d~~~al~~la~~~~~-~~~~~vIgVTGT~GKTTT~~ll~~iL-~~~~~~~~~~~~~n~~ig~p~~~ 152 (822)
T PRK11930 80 PDANFLKVK-----DPLKALQELAAYHRS-QFDIPVIGITGSNGKTIVKEWLYQLL-SPDYNIVRSPRSYNSQIGVPLSV 152 (822)
T ss_pred CCCCEEEEC-----CHHHHHHHHHHHHHH-hCCCCEEEEeCCCcHHHHHHHHHHHH-hccCcEecCCcccCcchhHHHHH
Confidence 257999999 999999999997776 78899999999999999999999999 55567777899999999999999
Q ss_pred hcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHH
Q 011395 179 IGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (487)
Q Consensus 179 ~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~ 258 (487)
+.+.++++++|+|+|+++.+++.+++.+++||++|||||++||+++|||+|+|+++|.+||+. .+.+|+|.||+...
T Consensus 153 ~~~~~~~~~~V~E~s~s~~~~~~~l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~ 229 (822)
T PRK11930 153 WQLNEEHELGIFEAGISQPGEMEALQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELIS 229 (822)
T ss_pred hcCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHH
Confidence 888889999999999999999999998899999999999999999999999999999999975 57999999999887
Q ss_pred hhcCC--CCCcEEEEeCCC-CceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHH
Q 011395 259 NLTVP--RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQ 335 (487)
Q Consensus 259 ~~~~~--~~~~vi~~g~~~-~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~ 335 (487)
.+... ...++++||.+. .+++++.+ +....++..|.+..++....+.+|++|.||++|+++|++++..+|+++++
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~d~~~~~--i~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~ 307 (822)
T PRK11930 230 SCITKSNLTLKLISWSRKDPEAPLYIPF--VEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYLGYSADQ 307 (822)
T ss_pred HHHHhhhcCCcEEEEcCCCCCCcEEEEE--EEEcCCceEEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 65411 124678999754 56888877 77666666777654322237899999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHH
Q 011395 336 VGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCC 415 (487)
Q Consensus 336 i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~ 415 (487)
|+++|++|++++||||++...+++++|||||||||+||+++|++++++.+.+++++|+|+|.|+|.++.+.|+++++.+.
T Consensus 308 i~~~L~~f~~~~gR~e~~~~~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~ 387 (822)
T PRK11930 308 IQERMARLEPVAMRLEVKEGINNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLIS 387 (822)
T ss_pred HHHHHHhCCCCCCeeEEEEcCCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999986578999999999999999999999998764468999999999999999999999999998
Q ss_pred HcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHHh
Q 011395 416 DACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIKA 486 (487)
Q Consensus 416 ~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~~ 486 (487)
..++++||++|+....+.+.+.. ..+.++++.+++++++.+.+++||+||+||||+++||++++.|++
T Consensus 388 ~~~i~~vi~~G~~~~~~~~~~~~---~~~~~~~~~e~a~~~l~~~~~~gDvVLlKGSr~~~le~i~~~~~~ 455 (822)
T PRK11930 388 KRGIDRLIGIGEEISSEASKFEG---TEKEFFKTTEAFLKSFAFLKFRNELILVKGARKFEFEQITELLEQ 455 (822)
T ss_pred HcCCCEEEEECHHHHHHHHhcCc---cccEEECCHHHHHHHHHHhcCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 77799999999998877665432 235678999999999999999999999999999999999998863
No 6
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.6e-77 Score=676.38 Aligned_cols=424 Identities=35% Similarity=0.490 Sum_probs=372.7
Q ss_pred CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHHHH
Q 011395 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYA 125 (487)
Q Consensus 46 ~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~~~ 125 (487)
+++|++|||.|+| |+||||+||+++|||+|+++|++ +||+++|++++....++|+++|+ |++++|++|+.++
T Consensus 526 i~~i~~dSr~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~i~~~~~~~~~~~~i~V~-----d~~~al~~la~~~ 597 (958)
T PRK11929 526 AGAVSTDSRSVGR--GELFVALRGENFDGHDYLPQAFA-AGACAAVVERQVADVDLPQIVVD-----DTRAALGRLATAW 597 (958)
T ss_pred cCeEEeeCCccCC--CCEEEEecCCCCCHHHHHHHHHH-cCCEEEEECCCccCCCCCEEEeC-----CHHHHHHHHHHHH
Confidence 8999999999999 99999999999999999999999 99999999975422367999999 9999999999976
Q ss_pred hhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCC--CceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhh
Q 011395 126 RNSRFSGVLVGVTGSVGKSTTKSMIALALESLG--VNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (487)
Q Consensus 126 ~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g--~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~ 203 (487)
+. ..+.++||||||||||||++||+++|+..+ ..+..+.||+|+.+|.|++++.++.+++++|+|+|+++.+++.++
T Consensus 598 ~~-~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~~~~~~~~~VlE~s~~~~g~~~~~ 676 (958)
T PRK11929 598 RA-RFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYL 676 (958)
T ss_pred Hh-cCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhcCCCCCcEEEEEeCCCCCccHHHH
Confidence 66 567899999999999999999999997764 346778999999999999998888889999999999988999998
Q ss_pred ccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCC-CCCcEEEEeCCCCceEEEE
Q 011395 204 ARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGCDVRLV 282 (487)
Q Consensus 204 ~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~d~~~~ 282 (487)
..+++||++|||||++||+++|+|+|+|+++|.+||+.+++++.+|+|.||++...+... ...++++||.+..+++.+.
T Consensus 677 ~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~~~~ 756 (958)
T PRK11929 677 AAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAE 756 (958)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcceEee
Confidence 888899999999999999999999999999999999998889999999999987776511 1246789997655565543
Q ss_pred eceEEe-----cCCeEEEEEeec-ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec
Q 011395 283 AAQVAN-----GGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR 356 (487)
Q Consensus 283 ~~~i~~-----~~~~~~~~~~~~-~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~ 356 (487)
. +.. ..++..|.+... +.. +++++++|.||++|+++|++++..+|+++++|+++|++|+++|||||++...
T Consensus 757 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~~~ 833 (958)
T PRK11929 757 K--IAKDISVGEAGGTRCQVVTPAGSA-EVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLERFQPVAGRMQRRRLS 833 (958)
T ss_pred e--cccceeecCCCceEEEEEECCceE-EEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCCceEEEcC
Confidence 3 221 224455665433 233 7889999999999999999999999999999999999999999999999876
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHh
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENM 436 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~ 436 (487)
+++.+|||||||||+||+++|++++++. .+|+++|+|+|.|+|++++..|++|++.+.+..++.|+++|+.++.+.+.+
T Consensus 834 ~~~~iidDsya~np~s~~aaL~~l~~~~-~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~~~~i~~~~ 912 (958)
T PRK11929 834 CGTRIIDDTYNANPDSMRAAIDVLAELP-NGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAARDAAAAF 912 (958)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHhcc-CCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcCHHHHHHhh
Confidence 7899999999999999999999999876 468999999999999999999999999998877899999999999998877
Q ss_pred hhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHH
Q 011395 437 NLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 437 ~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
.... ...++++++|++++.+.+++||+||+||||+++||++++.|+
T Consensus 913 ~~~~---~~~~~~~~~a~~~~~~~~~~gD~VLlkGSr~~~le~~~~~~~ 958 (958)
T PRK11929 913 GAGA---RGVCASVDEIIAALRGALPEGDSVLIKGSRFMRLERVVDALS 958 (958)
T ss_pred hccc---ceeeCCHHHHHHHHHHhcCCCCEEEEEeCccCcHHHHHHhhC
Confidence 5432 124899999999999999999999999999999999999863
No 7
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=3.7e-73 Score=596.16 Aligned_cols=412 Identities=23% Similarity=0.304 Sum_probs=340.5
Q ss_pred CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC--CCCccEEEEcCCCCccHHHHHHHHHH
Q 011395 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NWDKGFVQVEGNGNVNTLNSLVNMAC 123 (487)
Q Consensus 46 ~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~--~~~~~~i~V~~~~~~d~~~aL~~la~ 123 (487)
+++|++|||+|+| |+||||++|+++|||+|+++|++ +||+++|++++.+ .+++|+++|+ |+++||++||+
T Consensus 4 ~~~v~~dsr~v~~--g~lFval~G~~~dgh~fi~~A~~-~GA~~~i~~~~~~~~~~~~~~~~v~-----d~~~al~~la~ 75 (464)
T TIGR01085 4 VTGLTLDSREVKP--GDLFVAIKGTHVDGHDFIHDAIA-NGAVAVVVERDVDFYVAPVPVIIVP-----DLRHALSSLAA 75 (464)
T ss_pred eeEEEecCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEccccccccCCceEEEEC-----CHHHHHHHHHH
Confidence 6799999999999 99999999999999999999999 9999999998643 1257999999 99999999999
Q ss_pred HHhh-cCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCce--EecCCCC---CCcchhh------------hHhhcC-CCC
Q 011395 124 YARN-SRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV--FQSYGNW---NNRVGVA------------LSLIGI-DRA 184 (487)
Q Consensus 124 ~~~~-p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v--~~t~g~~---n~~~g~p------------~~l~~~-~~~ 184 (487)
.+++ |+.+.++||||||||||||++||+++|+..|+++ .++.||+ |+.+|.| .+++.+ +.+
T Consensus 76 ~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~ 155 (464)
T TIGR01085 76 AFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAG 155 (464)
T ss_pred HHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCC
Confidence 5554 5568899999999999999999999999888875 5677887 7777766 224444 678
Q ss_pred CcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCC
Q 011395 185 VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR 264 (487)
Q Consensus 185 ~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~ 264 (487)
++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|.+|++.++++|.+|+|.|||....+....
T Consensus 156 ~~~~VlE~g-~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~ 233 (464)
T TIGR01085 156 AQYAVMEVS-SHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRL 233 (464)
T ss_pred CCEEEEEec-HHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhc
Confidence 999999999 66667777776 7999999999999999999999999999999999988889999999999887765211
Q ss_pred CCcEEEEeC-CC-----CceEEEEeceEEecCCeEEEEEeec-ceEEEEEeCCCchhhHHHHHHHHHHHHHcC-CCHHHH
Q 011395 265 GVRKVFFGW-RR-----GCDVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFG-VSLAQV 336 (487)
Q Consensus 265 ~~~vi~~g~-~~-----~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~~nv~NalaAia~a~~lg-~~~~~i 336 (487)
... ++|+. .. .+++++.+ +.....+..|.+... +.. .+.+|++|.||++|+++|++++..+| ++++.|
T Consensus 234 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~l~G~hn~~NalaAia~a~~lg~i~~e~i 309 (464)
T TIGR01085 234 PKD-ITVSAITQPADGRAQDIKITD--SGYSFEGQQFTFETPAGEG-HLHTPLIGRFNVYNLLAALATLLHLGGIDLEDI 309 (464)
T ss_pred CCC-eEEEEecCCCccccccEEEEE--EEEecCceEEEEEeCCceE-EEEecCccHhHHHHHHHHHHHHHHcCCCCHHHH
Confidence 122 23332 21 34666666 555445566766543 233 78999999999999999999999999 999999
Q ss_pred HHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 011395 337 GISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD 416 (487)
Q Consensus 337 ~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~ 416 (487)
+++|++|+|++||||++...+++.||+| |||||+||+++++++++.+ .+|+++|+| +|.+++..|+++++.+..
T Consensus 310 ~~~L~~~~~~~gR~e~~~~~~g~~vi~D-y~~NP~s~~aal~~l~~~~-~~r~i~VlG----lg~~~~~~~~~~~~~~~~ 383 (464)
T TIGR01085 310 VAALEKFRGVPGRMELVDGGQKFLVIVD-YAHTPDALEKALRTLRKHK-DGRLIVVFG----CGGDRDRGKRPLMGAIAE 383 (464)
T ss_pred HHHHHhCCCCCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhC-CCcEEEEEC----CCCCCCcchhHHHHHHHH
Confidence 9999999999999999986567899999 9999999999999998764 468999999 577778889998888876
Q ss_pred cCCCEEEEECccH-----HHHHHHhhhhcC--CeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcH
Q 011395 417 ACIDLIGLVGDRF-----RAAAENMNLIKT--DYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQM 477 (487)
Q Consensus 417 ~~~d~vi~~g~~~-----~~i~~~~~~~~~--~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~ 477 (487)
..+|.++++|+++ ..+.+.+..... ..+.+++|+++|++++.+.+++||+||++|.....+
T Consensus 384 ~~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~VLv~G~g~~~~ 451 (464)
T TIGR01085 384 QLADLVILTSDNPRGEDPEQIIADILAGISEKEKVVIIADRRQAIRYAISNAKAGDVVLIAGKGHEDY 451 (464)
T ss_pred hcCCEEEEeCCCcCCCCHHHHHHHHHhcccCCCcEEEECCHHHHHHHHHHhcCCCCEEEEEEcCCccc
Confidence 6689999998765 344333322211 135668999999999999999999999999876554
No 8
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.6e-72 Score=589.73 Aligned_cols=399 Identities=24% Similarity=0.304 Sum_probs=331.4
Q ss_pred CCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC-CCCccEEEEcCCCCccHHHHHHHHHH
Q 011395 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGFVQVEGNGNVNTLNSLVNMAC 123 (487)
Q Consensus 45 ~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~-~~~~~~i~V~~~~~~d~~~aL~~la~ 123 (487)
.+++|++|||.++| |+||||++|+++|||+|+++|++ +||.++|++++.+ ..++|+++|+ |+++||+.||+
T Consensus 14 ~i~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~i~V~-----d~~~al~~la~ 85 (460)
T PRK00139 14 EITGLTYDSRKVKP--GDLFVALPGHKVDGRDFIAQAIA-NGAAAVVAEADGEAGTGVPVIIVP-----DLRKALALLAA 85 (460)
T ss_pred ceeEEEeeccCcCC--CCEEEEeCCCcCcHHHHHHHHHH-CCCEEEEEcCccccCCCceEEEEC-----CHHHHHHHHHH
Confidence 48899999999999 99999999999999999999999 9999999997532 1267999999 99999999999
Q ss_pred HH-hhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchh-----------hhHhhc-----CCCCCc
Q 011395 124 YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV-----------ALSLIG-----IDRAVD 186 (487)
Q Consensus 124 ~~-~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~-----------p~~l~~-----~~~~~~ 186 (487)
++ ++|+.++++||||||||||||++||+++|++.|+++ .+.||.|+.++. |++++. .+.+++
T Consensus 86 ~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~-~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~ 164 (460)
T PRK00139 86 AFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKT-ALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVT 164 (460)
T ss_pred HHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCE-EEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCC
Confidence 54 455557899999999999999999999998888665 478888888776 776654 367899
Q ss_pred EEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCC
Q 011395 187 IAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGV 266 (487)
Q Consensus 187 ~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~ 266 (487)
++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++|++... +.+|+|.||+....+..
T Consensus 165 ~~VlE~~-s~~~~~~~l~~-~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~~--~~~v~n~dd~~~~~~~~---- 236 (460)
T PRK00139 165 YAAMEVS-SHALDQGRVDG-LKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELG--LAAVINADDEVGRRLLA---- 236 (460)
T ss_pred EEEEEcc-hhhHhhchhcC-CcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcCC--CeEEEEcCcHhHHHHHh----
Confidence 9999998 45445556655 7999999999999999999999999999999998642 48999999998877652
Q ss_pred cEEEEeCC-CCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCC
Q 011395 267 RKVFFGWR-RGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSP 345 (487)
Q Consensus 267 ~vi~~g~~-~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~ 345 (487)
++.+|+.. ..+++++.+ +.....+..|.+.. .+.++++|.||++|+++|++++..+|+++++|+++|++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~~~~ 309 (460)
T PRK00139 237 LPDAYAVSMAGADLRATD--VEYTDSGQTFTLVT-----EVESPLIGRFNVSNLLAALAALLALGVPLEDALAALAKLQG 309 (460)
T ss_pred hcEEEEecCCCCcEEEEE--EEEecCceEEEEEE-----EEEecccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 24567765 456787777 65555555665531 57889999999999999999999999999999999999999
Q ss_pred CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE
Q 011395 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (487)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~ 425 (487)
++||||++...+++++|+| |||||+||+++++++++.. .+|+++|||+ |.+.+..|++++..+....+|.++++
T Consensus 310 ~~gR~e~~~~~~~~~iI~D-yahNP~s~~aal~~l~~~~-~~r~i~VlG~----g~~k~~~~~~~~~~~~~~~~d~vi~~ 383 (460)
T PRK00139 310 VPGRMERVDAGQGPLVIVD-YAHTPDALEKVLEALRPHA-KGRLICVFGC----GGDRDKGKRPLMGAIAERLADVVIVT 383 (460)
T ss_pred CCCCcEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhc-CCcEEEEECC----CCCCchhhhHHHHHHHHHcCCEEEEE
Confidence 9999999986568899999 9999999999999998865 4689999995 55666677765555554448999999
Q ss_pred CccHH-----HHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCc
Q 011395 426 GDRFR-----AAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQ 476 (487)
Q Consensus 426 g~~~~-----~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~ 476 (487)
++.++ .+.+.+..+. ..+++|+++|++.+.+.+++||+||+.|+....
T Consensus 384 ~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~Ai~~~~~~~~~gDvVLv~G~G~e~ 436 (460)
T PRK00139 384 SDNPRSEDPAAIIADILAGI---YDVIEDRAEAIRYAIAQAKPGDVVLIAGKGHED 436 (460)
T ss_pred CCCCCCCCHHHHHHHHHhCC---CcccCCHHHHHHHHHHhcCCCCEEEEEEccCcc
Confidence 76543 3666664321 235789999999999999999999999995443
No 9
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.2e-69 Score=571.24 Aligned_cols=402 Identities=19% Similarity=0.222 Sum_probs=318.0
Q ss_pred CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHH-H
Q 011395 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMAC-Y 124 (487)
Q Consensus 46 ~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~-~ 124 (487)
+++|++|||.|+| |+||||+ |.++ ||+|+++|++ +||+++|+++..+. ++|+++|+ |+++||+.||+ +
T Consensus 34 i~~i~~DSR~v~~--g~lFva~-~~~~-gh~fi~~A~~-~GA~~~v~~~~~~~-~~~~i~V~-----d~~~al~~la~~~ 102 (481)
T PRK14022 34 FDDISYDSRTADE--GTLFFAK-GAYF-KHKFLQNAIT-QGLKLYVSEKDYEV-GIPQVIVP-----DIKKAMSLIAMEF 102 (481)
T ss_pred EEEEEecCcCCCC--CCEEEEc-CCCc-hHHHHHHHHH-CCCeEEEEecccCC-CCcEEEEC-----CHHHHHHHHHHHH
Confidence 8999999999999 9999999 6677 9999999999 99999999974321 57999999 99999999999 5
Q ss_pred HhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcch---------hh--hHhhc-----CCCCCcEE
Q 011395 125 ARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVG---------VA--LSLIG-----IDRAVDIA 188 (487)
Q Consensus 125 ~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g---------~p--~~l~~-----~~~~~~~~ 188 (487)
+.+|+.++++||||||||||||++||+++|+..|. +..+.|+.++.+| .| +++++ .+.+.+++
T Consensus 103 ~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~-~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~~~~~e~g~~~~ 181 (481)
T PRK14022 103 YDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHK-PAMLSTMNTTLDGETFFKSALTTPESLDLFKMMAEAVDNGMTHL 181 (481)
T ss_pred hcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCC-CEEEEeeeeeccCCeeeeCCCCCchHHHHHHHHHHHHHCCCCEE
Confidence 66677899999999999999999999999977665 4445555544444 77 55543 24589999
Q ss_pred EEeccCCCcchHHhhccccCCcEEEEcCCChhhhhc--CCCHHHHHHHHHhhcccCCCCCeEEEcCC-cHHHHhhcCCCC
Q 011395 189 VLEMGMSGKGEILELARMARPEIRVVLNVGDSHLES--LGSLEDVARAKGEIFQESKLGDVCVLNAD-DPLVANLTVPRG 265 (487)
Q Consensus 189 V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~--~gs~e~~~~aK~~i~~~~~~~~~~vln~D-d~~~~~~~~~~~ 265 (487)
|||+|+. +.+......++|+++|||||++||+++ |+|+|+|+++|++||+ +++.+|+|.| |+..........
T Consensus 182 v~EvsS~--~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~ 256 (481)
T PRK14022 182 IMEVSSQ--AYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTP 256 (481)
T ss_pred EEEechh--HHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcC
Confidence 9999843 223333335799999999999999999 8999999999999995 4789999999 555332221112
Q ss_pred CcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 011395 266 VRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFS 344 (487)
Q Consensus 266 ~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~ 344 (487)
.++++||.+..+++...+ .|.+...+. ...+.++++|.||++|+++|++++..+|++++.|+++|++ .
T Consensus 257 ~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~i~~~L~~-~ 325 (481)
T PRK14022 257 QEHDFYGIDSENQIMASN----------AFSFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRLGASLEDIQKGIAQ-T 325 (481)
T ss_pred CCEEEEecCCccceEEEE----------EEEEEEcccCCceEEEEEechhhHHHHHHHHHHHHHcCCCHHHHHHHhcc-C
Confidence 467889876444443221 233322100 0146678999999999999999999999999999999999 9
Q ss_pred CCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE
Q 011395 345 PVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424 (487)
Q Consensus 345 ~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~ 424 (487)
++|||||++...+++.||+| |||||+||++++++++++. .+|+++|||+|.|.|.. .|+++++.+.......+|+
T Consensus 326 ~~~gR~e~i~~~~g~~vi~D-yahNP~s~~aal~~l~~~~-~~r~i~V~G~~~e~g~~---~~~~~~~~~~~~~~~~vi~ 400 (481)
T PRK14022 326 PVPGRMEVLTQSNGAKVFID-YAHNGDSLNKLIDVVEEHQ-KGKLILLLGAAGNKGES---RRPDFGRVANRHPYLQVIL 400 (481)
T ss_pred CCCCCeEEEECCCCCEEEEE-CCCCHHHHHHHHHHHhhhC-CCCEEEEECCCCCCCcc---hhHHHHHHHHhcCCceEEE
Confidence 99999999986467899999 9999999999999998865 57899999998766644 3788999998863234888
Q ss_pred ECccH-----HHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCC-CCCEEEEecCCCCcHHHHH
Q 011395 425 VGDRF-----RAAAENMNLIKTDYIVVTNDAEILSQKIVKRLK-SNDVVLVKGSRAMQMEKVV 481 (487)
Q Consensus 425 ~g~~~-----~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~-~~d~vLv~GSr~~~~e~~~ 481 (487)
+++++ ..+.+.+.......+.+++|+++|++.+.+.++ +||+||+ +++|+++++++
T Consensus 401 ~~~~~r~e~~~~i~~~i~~~~~~~~~~~~d~~~Ai~~a~~~a~~~gD~VLi-~G~G~~~~~~~ 462 (481)
T PRK14022 401 TADDPNNEDPKMITQEIASHITHPVEIIDDRAEAIKHAMSITEGPGDAVII-AGKGADAYQIV 462 (481)
T ss_pred ccCCCCCCCHHHHHHHHHhcCCCCeEEECCHHHHHHHHHHhcCCCCCEEEE-EecCCcceEEE
Confidence 87554 778887764322245678999999999999999 9999999 77777776654
No 10
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.6e-68 Score=602.88 Aligned_cols=413 Identities=24% Similarity=0.286 Sum_probs=339.2
Q ss_pred CCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC---C-CCccEEEEcCCCCccHHHHHHH
Q 011395 45 PPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---N-WDKGFVQVEGNGNVNTLNSLVN 120 (487)
Q Consensus 45 ~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~---~-~~~~~i~V~~~~~~d~~~aL~~ 120 (487)
.+++|++|||.|+| |+||||++|+++|||+|+++|++ +||.++|++++.. . .++|+|.|+ |++++|+.
T Consensus 28 ~~~~i~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~GA~~~v~~~~~~~~~~~~~~~~i~V~-----d~~~al~~ 99 (958)
T PRK11929 28 ATADLRLDSREVQP--GDLFVACRGAASDGRAFIDQALA-RGAAAVLVEAEGEDQVAAADALVLPVA-----DLRKALGE 99 (958)
T ss_pred ccceeeeeccCCCC--CCEEEEeCCCCCCHHHHHHHHHH-cCCEEEEEeccccccccCCCCeEEEEC-----CHHHHHHH
Confidence 49999999999999 99999999999999999999999 9999999997531 1 257999999 99999999
Q ss_pred HHH-HHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCc-----chhhhHh----------hcC-CC
Q 011395 121 MAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR-----VGVALSL----------IGI-DR 183 (487)
Q Consensus 121 la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~-----~g~p~~l----------~~~-~~ 183 (487)
||+ ++++|+.++++||||||||||||++||+++|+..|++++ +.||+|++ ++.|+|. ..+ +.
T Consensus 100 la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~-~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~ 178 (958)
T PRK11929 100 LAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCG-SIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAA 178 (958)
T ss_pred HHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEE-EECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHC
Confidence 999 888887889999999999999999999999988888874 67777763 5556543 233 67
Q ss_pred CCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC-
Q 011395 184 AVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV- 262 (487)
Q Consensus 184 ~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~- 262 (487)
+++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++||+.+++++.+|+|.|||....+..
T Consensus 179 ~~~~~VlE~s-s~~l~~~rl~~-~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~ 256 (958)
T PRK11929 179 GADAVAMEAS-SHGLEQGRLDG-LRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAA 256 (958)
T ss_pred CCCEEEEEec-cchHhhCcccc-cccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHH
Confidence 8999999997 55566778776 69999999999999999999999999999999998888999999999998877651
Q ss_pred -CCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 011395 263 -PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLS 341 (487)
Q Consensus 263 -~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~ 341 (487)
.....+.+|+....+++++.+ +.....+..|.+..++....+.+|++|.||++|+++|++++..+|+++++|+++|+
T Consensus 257 ~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~I~~~L~ 334 (958)
T PRK11929 257 LPRGLKVGYSPQNAGADVQARD--LRATAHGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKLGLPLAQIARALA 334 (958)
T ss_pred cCCCceEEEEeeCCCccEEEEE--EEEcCCceEEEEEeCCceEEEEecCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 111245566654456888777 76655566777754322236889999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEe---ecCCeEEEEecCCCCHHHHHHHHHHHHccc--cCCcEEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 011395 342 NFSPVQMRSELLV---SRSGIKIVNDAYNANPISTRAAIDLLKDIA--CNGKRVVILGDMLELGSTERESHEKILSYCCD 416 (487)
Q Consensus 342 ~~~~~~gR~e~~~---~~~~~~ii~Dsya~np~s~~~~l~~l~~~~--~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~ 416 (487)
+|++++||||++. ..+++.+|+| |||||+||++++++++++. +.+|+++|||+ |.+++..++++...+..
T Consensus 335 ~~~~~~gR~e~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~----g~~r~~~~~~~~~~~~~ 409 (958)
T PRK11929 335 AVSPVPGRMERVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGC----GGDRDKGKRPEMGRIAA 409 (958)
T ss_pred cCCCCCCCcEEeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECC----CCCCCcchhHHHHHHHH
Confidence 9999999999994 3367889999 9999999999999998543 23678999995 44455556655555543
Q ss_pred cCCCEEEEECcc-----HHHHHHHhhhhcC--CeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 417 ACIDLIGLVGDR-----FRAAAENMNLIKT--DYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 417 ~~~d~vi~~g~~-----~~~i~~~~~~~~~--~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
..+|.|+++.++ +..|.+.+..... ..+..++|+++|++.+.+.+++||+||+.||...
T Consensus 410 ~~~d~vi~t~~~pr~e~p~~i~~~i~~~~~~~~~~~~~~d~~~Ai~~a~~~a~~gD~VLv~GsG~e 475 (958)
T PRK11929 410 ELADRVVVTSDNPRSEAPEAIIDQILAGIPAGARVFVISDRAEAIRQAIWMAAPGDVILIAGKGHE 475 (958)
T ss_pred HhCCEEEEcCCCCCCCCHHHHHHHHHhhccCCCceEEECCHHHHHHHHHHhcCCCCEEEEeecCcc
Confidence 338999988654 4567777654321 2467789999999999999999999999999443
No 11
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-60 Score=490.95 Aligned_cols=410 Identities=23% Similarity=0.280 Sum_probs=333.4
Q ss_pred CeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEecccc-CC-CCccEEEEcCCCCccHHHHHHHHHH-
Q 011395 47 GIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC-NN-WDKGFVQVEGNGNVNTLNSLVNMAC- 123 (487)
Q Consensus 47 ~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~-~~-~~~~~i~V~~~~~~d~~~aL~~la~- 123 (487)
++++.|||.+++ |+||+|++|.++|||+|+.+|++ +||.+++++... .. ..+|++.|+ +++.++..++.
T Consensus 11 ~~l~~dsr~v~~--g~lf~a~~g~~~~g~~~~~~a~~-~Gavav~~~~~~~~~~~~~~vi~V~-----~~~~~~~~~a~~ 82 (475)
T COG0769 11 TGLTLDSRKVKE--GDLFVAKPGTKVDGHDFIAGAIA-PGAVAVVVEKDIKLAEAGVPVIVVT-----GTNGKLTTLALA 82 (475)
T ss_pred ccceeehhhcCC--CcEEEEEeccccccccchHhHhh-CCCEEEEecccccccccCCCEEEEc-----CcHHHHHHHHHH
Confidence 789999999999 99999999999999999999999 999999999653 11 257789999 99999999998
Q ss_pred HHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCCCCCC-c------chhh--hHhh-----cCCCCCcE
Q 011395 124 YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNN-R------VGVA--LSLI-----GIDRAVDI 187 (487)
Q Consensus 124 ~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g~~n~-~------~g~p--~~l~-----~~~~~~~~ 187 (487)
+|..|+.++++|+||||||||||++++.++++..|.++. +|.+...+ . .-.| +.+. .+++++++
T Consensus 83 ~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~ 162 (475)
T COG0769 83 FYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEI 162 (475)
T ss_pred hccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcE
Confidence 899888789999999999999999999999988888763 34442221 0 1112 2222 25789999
Q ss_pred EEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHH---hhcCCC
Q 011395 188 AVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVA---NLTVPR 264 (487)
Q Consensus 188 ~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~---~~~~~~ 264 (487)
++||+++. .....|+. .+.++++++||+++||+++|+++|+|+.+|..+|..+++.+..|+|.||++.. ....+.
T Consensus 163 ~vmEvssh-~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~ 240 (475)
T COG0769 163 AVMEVSSH-GLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNA 240 (475)
T ss_pred EEEEeehh-HHHhCCcc-CceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhc
Confidence 99999854 33555554 36899999999999999999999999999999998667788999999999884 333222
Q ss_pred CCcEEEEeCCCCceE-EEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011395 265 GVRKVFFGWRRGCDV-RLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (487)
Q Consensus 265 ~~~vi~~g~~~~~d~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~ 343 (487)
...+++||.+.+.+. .... ++....++.+.+...+....+++|++|.||++|+|+|+++++.+|+|+++|+++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~--i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~ 318 (475)
T COG0769 241 LGDYITYGCDFKRPDLDYRG--IEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETL 318 (475)
T ss_pred CCCEEEeCCCCchhhhhhcc--ceeeeccceeEEEccCCceeEeccccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 247899998754221 1112 4444455555554442233899999999999999999999999999999999999999
Q ss_pred CCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEE
Q 011395 344 SPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIG 423 (487)
Q Consensus 344 ~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi 423 (487)
+|++||||.+.. +++.+++| |||||++++++|++++.+. .+|+++|+|+ .|++++.++..|+.++.++ .|.++
T Consensus 319 ~~v~GRmE~v~~-~~~~v~VD-yAHnPd~le~~L~~~~~~~-~g~li~VfG~---gGDrD~~kr~~mg~ia~~~-ad~vi 391 (475)
T COG0769 319 KPVPGRMELVNI-GGKLVIVD-YAHNPDGLEKALRAVRLHA-AGRLIVVFGC---GGDRDKSKRPDMGAIAEQL-ADIVI 391 (475)
T ss_pred CCCCCcceEecC-CCCeEEEE-eccChHHHHHHHHHHHhhc-CCcEEEEECc---cCCCCcccccchHHHHHhc-CCcEE
Confidence 999999999998 49999999 9999999999999999655 5889999998 6777777778899998887 89999
Q ss_pred EECcc-----HHHHHHHhhhhc--CCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 424 LVGDR-----FRAAAENMNLIK--TDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 424 ~~g~~-----~~~i~~~~~~~~--~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
++.++ +..+.+.+..+. ..++....|+++||+++++.++++|+|++.|+...
T Consensus 392 vt~dnpR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagkGhe 450 (475)
T COG0769 392 VTSDNPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGKGHE 450 (475)
T ss_pred EcCCCCCCcCHHHHHHHHHhccCCccceecchhHHHHHHHHHHhhccCCEEEEeeccch
Confidence 99755 455666665554 22367788999999999999999999999998443
No 12
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-51 Score=431.04 Aligned_cols=319 Identities=24% Similarity=0.280 Sum_probs=258.3
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhH--hhcCCCCCcEEEEeccCCCcchHHhhccccCC
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS--LIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~--l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~p 209 (487)
.++||||||||||||++||+++|+..++++. +.|| +|.|++ +.... +.+++|+|+|+++.+++. ++|
T Consensus 117 ~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~-~~gn----iG~p~~~~~~~~~-~~~~~VlE~~~~~~~~~~-----~~P 185 (458)
T PRK01710 117 AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTW-VGGN----IGTPLFSNIEEIK-EEDKVVLELSSFQLMTMD-----VSP 185 (458)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCEE-ECCc----cChhHHHHHhhCC-CCCEEEEEcCccccccCC-----CCC
Confidence 6899999999999999999999988887764 5666 788876 33333 689999999998886542 599
Q ss_pred cEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCC---ceEEEEeceE
Q 011395 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG---CDVRLVAAQV 286 (487)
Q Consensus 210 dvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~---~d~~~~~~~i 286 (487)
|++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+.+..+......++++||...+ .++.. .
T Consensus 186 diaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~n~Dd~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~--- 261 (458)
T PRK01710 186 EVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVLNKDNEITNGMEKEAKGDVVKFSRKEKVYEGAYLK-N--- 261 (458)
T ss_pred CEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCCcEEEEeCCCCCCCceEEe-C---
Confidence 9999999999999999999999999999999888899999999999887765222256889986431 12211 1
Q ss_pred EecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecC
Q 011395 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsy 366 (487)
. .+.+.+......+.++++|.||++|+++|++++..+ ++++.|+++|++|++++||||.+...+++++|||||
T Consensus 262 ----~--~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~-i~~~~i~~~L~~f~~~~~R~e~~~~~~g~~~i~Dsy 334 (458)
T PRK01710 262 ----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD-VSIESMKKVATTFSGVEHRCEFVREINGVKYYNDSI 334 (458)
T ss_pred ----C--EEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC-CCHHHHHHHHHhCCCCCcceEEEEEECCEEEecccc
Confidence 0 111111100114678999999999999999999987 999999999999999999999987657899999999
Q ss_pred CCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhh----hc-C
Q 011395 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNL----IK-T 441 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~----~~-~ 441 (487)
||||+||.++|+.+. +++++|+| |.+++..|+++++.+... ++.||++|+....+.+.+.. .+ .
T Consensus 335 ~~np~s~~~al~~~~-----~~~i~IlG-----g~~~~~~~~~l~~~~~~~-~~~vi~~G~~~~~~~~~~~~~~~~~~~~ 403 (458)
T PRK01710 335 ASSPTRTLAGLKAFE-----KPVILIAG-----GYDKKIPFEPLAEEGYEK-IKTLILMGATKNKIKEAFEKVISEKGID 403 (458)
T ss_pred cCCHHHHHHHHHhCC-----CCEEEEeC-----CcCCCCCHHHHHHHHHhh-ccEEEEECCCHHHHHHHHhhcccccCCC
Confidence 999999999998873 26899998 455677899999988754 89999999999888887742 11 1
Q ss_pred CeEEEECCHHHHHHHHHhhCCCCCEEEEecC------------CCCcHHHHHHH
Q 011395 442 DYIVVTNDAEILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVVDV 483 (487)
Q Consensus 442 ~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~~~ 483 (487)
..+.++++.++|++.+.+.+++||+||++.. ||..|.+++..
T Consensus 404 ~~~~~~~~~~~a~~~~~~~~~~gd~VLlspa~aS~d~f~~~~~RG~~F~~~v~~ 457 (458)
T PRK01710 404 IPIVIVNSLEEAVKVAKEIAEKGDIVTLSPACASFDMFPNFEIRGNKFKEIVNN 457 (458)
T ss_pred cceEEcCCHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHh
Confidence 2356789999999999999999999999943 77777777764
No 13
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-50 Score=422.77 Aligned_cols=365 Identities=24% Similarity=0.275 Sum_probs=282.9
Q ss_pred eCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHHHHhhcCCC
Q 011395 52 DTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFS 131 (487)
Q Consensus 52 dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~ 131 (487)
+++.+++ .++||+.+|-..| |.++.+|.+ +|+ |+ +. +. +. ++..+ +
T Consensus 59 ~~~~~~~--~d~vv~spgi~~~-~~~~~~a~~-~g~--------------~v--~~-----~~-el---~~~~~-----~ 104 (438)
T PRK03806 59 NDEWLLA--ADLIVASPGIALA-HPSLSAAAD-AGI--------------EI--VG-----DI-EL---FCREA-----Q 104 (438)
T ss_pred CHHHhcC--CCEEEECCCCCCC-CHHHHHHHH-CCC--------------eE--EE-----HH-HH---Hhhhc-----C
Confidence 5566778 8999999999988 999999998 775 32 22 21 11 22222 2
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++|+||||||||||++||+++|+..|+++. ..|| +|.|.. ..+..+.+++|+|+|+++. +.++.++|++
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----ig~p~~-~~~~~~~~~~V~E~ss~~l----~~~~~~~p~i 174 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVG-VGGN----IGLPAL-SLLDQECELYVLELSSFQL----ETTSSLKAAA 174 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE-EeCC----cchhHH-HhhccCCCEEEEEccchhh----ccCcccCCCE
Confidence 5799999999999999999999988888764 5666 677762 2345577999999987654 2356679999
Q ss_pred EEEcCCChhhhhcC-CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecC
Q 011395 212 RVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (487)
Q Consensus 212 aViTNI~~dHl~~~-gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (487)
+|||||++||+++| +|+|+|+++|.+|++. .+.+|+|.||+.+..+... ..++++|+.+. .++.+.. .
T Consensus 175 aViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~-~~~~~~~--~---- 243 (438)
T PRK03806 175 ATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DKRCVSFGVNM-GDYHLNR--Q---- 243 (438)
T ss_pred EEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhcC-CceEEEEecCC-CceEEEe--c----
Confidence 99999999999999 6999999999999974 4789999999988775422 25678888643 3554332 1
Q ss_pred CeEEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 011395 291 LGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (487)
Q Consensus 291 ~~~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~n 369 (487)
.+..+.+...+. ...++++++|.||++|+++|++++..+|+++++|+++|++|++++||||++...+++.+|+|+||||
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~~~~gR~E~v~~~~~~~~i~Ds~a~n 323 (438)
T PRK03806 244 QGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLVLEHNGVRWINDSKATN 323 (438)
T ss_pred CCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCeEEEEEeeCCEEEEEcCCCCC
Confidence 122222221111 1146789999999999999999999999999999999999999999999997656889999999999
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECC
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTND 449 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d 449 (487)
|+|++++++.++. .+++++|+|+|.+.++ +.++.+.+... ...++++|+.+..+.+.+.. .+.++++
T Consensus 324 ~~a~~~al~~l~~---~~~~i~IlG~~~k~~d-----~~~l~~~l~~~-~~~v~~~g~~~~~l~~~~~~----~~~~~~~ 390 (438)
T PRK03806 324 VGSTEAALNGLHV---DGTLHLLLGGDGKSAD-----FSPLARYLNGD-NIRLYCFGRDGAQLAALRPE----VSQLTET 390 (438)
T ss_pred HHHHHHHHHhCcc---CCcEEEEECCcCCCCC-----HHHHHHHHHhh-CcEEEEECCCHHHHHHHhhc----ceEecCC
Confidence 9999999999862 3579999998766544 33566776655 45899999998888765521 2456889
Q ss_pred HHHHHHHHHhhCCCCCEEEEecC------------CCCcHHHHHHHH
Q 011395 450 AEILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVVDVI 484 (487)
Q Consensus 450 ~~~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~~~l 484 (487)
.++|++.+.+.++++|+||++.. ||..|.+++..|
T Consensus 391 ~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~~~ 437 (438)
T PRK03806 391 MEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 437 (438)
T ss_pred HHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHHHHHHHHHHhh
Confidence 99999999999999999999932 888888888754
No 14
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.1e-50 Score=400.06 Aligned_cols=349 Identities=23% Similarity=0.282 Sum_probs=282.4
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhh
Q 011395 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI 179 (487)
Q Consensus 100 ~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~ 179 (487)
++|++.=+ +.|+...+. ...|+|+||+|||||++||+++|+++|+++....|..-+..|...
T Consensus 90 ~ipi~~r~-----------e~Laelm~~----~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~g~na--- 151 (459)
T COG0773 90 GIPVISRA-----------EMLAELMRF----RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGTNA--- 151 (459)
T ss_pred CCCeEcHH-----------HHHHHHHhC----CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccCCccc---
Confidence 57887433 345555444 578999999999999999999999999987655554322233211
Q ss_pred cCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHh
Q 011395 180 GIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVAN 259 (487)
Q Consensus 180 ~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~ 259 (487)
.....+|.|+|++++... .+ .++|+++|+|||..||+|+|+++|++.++...+++.++..|.+|+|.|||.+++
T Consensus 152 -~~g~~~~fV~EADEsD~s---Fl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~ 225 (459)
T COG0773 152 -RLGSGDYFVAEADESDSS---FL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRE 225 (459)
T ss_pred -ccCCCceEEEEecccccc---cc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEEECCCHHHHH
Confidence 112348999999987642 12 259999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHH
Q 011395 260 LTVP-RGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVG 337 (487)
Q Consensus 260 ~~~~-~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~ 337 (487)
+..+ .+.++++||.+.++|+++.+ +.....+..|++...++ ..++.++++|+||+.|+++|+|+|+.+|++.+.|+
T Consensus 226 l~~~~~~~~v~tyG~~~~ad~~a~n--i~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~ 303 (459)
T COG0773 226 LLSRGCWSPVVTYGFDDEADWRAEN--IRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIA 303 (459)
T ss_pred HHhcccCCcEEeecCCCcCcEEEEE--eEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHcCCCHHHHH
Confidence 7732 34779999998669999999 99888888888865533 34899999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccC-CcEEEEEcCCCCCCccc--HHHHHHHHHHH
Q 011395 338 ISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN-GKRVVILGDMLELGSTE--RESHEKILSYC 414 (487)
Q Consensus 338 ~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~-~~~i~Vlg~m~e~G~~~--~~~~~~~~~~l 414 (487)
++|++|+++.+|||+....+++++||| |||+|..+++.|+++|+..+. +|+++||- +..++ ...+.++++.+
T Consensus 304 ~aL~~F~GvkRRfe~~g~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~~~rIvaifQ----PHrySRt~~~~~dF~~~l 378 (459)
T COG0773 304 EALASFQGVKRRFELKGEVNGVTVIDD-YAHHPTEIKATLAAARQKVPGGKRIVAVFQ----PHRYSRTRDLLDDFAKAL 378 (459)
T ss_pred HHHHhCCCcceeeEEeeeECCEEEEec-CCCCHHHHHHHHHHHHHhcCCCceEEEEEC----CCchHhHHHHHHHHHHHH
Confidence 999999999999998887789999999 999999999999999998853 68888884 56664 56777888888
Q ss_pred HHcCCCEEEEEC-----ccH-------HHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCC--CcHHHH
Q 011395 415 CDACIDLIGLVG-----DRF-------RAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRA--MQMEKV 480 (487)
Q Consensus 415 ~~~~~d~vi~~g-----~~~-------~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~--~~~e~~ 480 (487)
.. +|.|+++. +.+ +.+++.+...+ .+. +++.++..+.+...+++||+||++|..+ .-..++
T Consensus 379 ~~--AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~--~~~-~~~~~~~~~~l~~~~~~gD~il~mGAGdi~~~~~~~ 453 (459)
T COG0773 379 SD--ADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPG--HVD-VPDLDDLVELLAKVAQPGDVILFMGAGDIGKIAREL 453 (459)
T ss_pred hc--CCEEEEecccccCCCCCcCCccHHHHHHHhhcCC--ccc-CCCHHHHHHHHHhhCCCCCEEEEecCCcHHHHHHHH
Confidence 43 89999983 443 45666664432 122 6899999999999999999999997654 344555
Q ss_pred HHHH
Q 011395 481 VDVI 484 (487)
Q Consensus 481 ~~~l 484 (487)
++.+
T Consensus 454 ~~~l 457 (459)
T COG0773 454 LEAL 457 (459)
T ss_pred HHHh
Confidence 5544
No 15
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1e-49 Score=418.03 Aligned_cols=333 Identities=23% Similarity=0.307 Sum_probs=261.8
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCc-eEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVN-VFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~-v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++|+||||||||||++||+++|+..|++ +....||.++. |.+.. ..+.+++|+|+|+++. .. ..++|+
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~~~-~~~~~----~~~~~~~V~E~ss~q~-~~----~~~~p~ 176 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILNAA-GTNAR----LGNSDYFVAEADESDR-SF----LKLHPD 176 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceeccC-Ccccc----cCCCCEEEEECCCccc-hH----hhcCCC
Confidence 47999999999999999999999999865 34445554433 44432 2367999999987643 22 247999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecC
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (487)
++|||||++||+++|||+|+|+++|.+++..+++++.+|+|.||+....+..+..+++++|+..+.+++.... +....
T Consensus 177 vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 254 (461)
T PRK00421 177 IAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVSRPVITYGFSEDADFRAEN--IRQDG 254 (461)
T ss_pred EEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEE--EEEcC
Confidence 9999999999999999999999999999998888899999999998887762222678999976666777666 55444
Q ss_pred CeEEEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 011395 291 LGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (487)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~n 369 (487)
.+..|.+...+ .+..+.++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++.+|+| ||||
T Consensus 255 ~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~~~lgv~~~~i~~~l~~f~~~~~R~e~~~~~~g~~~i~D-~aHn 333 (461)
T PRK00421 255 GGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVALELGIDDEAIREALATFKGVKRRFEEKGEVGGVVLIDD-YAHH 333 (461)
T ss_pred CceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcccEEEEecCCcEEEEe-CCCC
Confidence 55667765332 222478899999999999999999999999999999999999999999999987568899999 9999
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECc-----------cHHHHHHHhhh
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD-----------RFRAAAENMNL 438 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~-----------~~~~i~~~~~~ 438 (487)
|+++++++++++.+.+.+|+++|+|.. ...++++...++++.+ .. +|.++++.. .+..+.+.+.+
T Consensus 334 p~~~~a~~~al~~~~~~~~i~~v~gp~--~~~r~kd~~~~~~~~l-~~-~d~vi~~~~~~~~e~~~~~~~~~~l~~~~~~ 409 (461)
T PRK00421 334 PTEIKATLKAARQGYPDKRIVAVFQPH--RYSRTRDLLDEFAEAL-SD-ADEVILLDIYAAGEEPIGGVDSEDLARKIKR 409 (461)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEECCC--CCccHHHHHHHHHHHH-HH-CCEEEEcCccCCCCCCCCCCCHHHHHHHHhc
Confidence 999999999999865336788999831 1233444455688877 54 799999733 34667777754
Q ss_pred hcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHH
Q 011395 439 IKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 439 ~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l 484 (487)
.. ..+..++++++|++.+.+.+++||+||++|+.. +..+.+.|
T Consensus 410 ~~-~~~~~~~~~~~a~~~a~~~a~~gD~vlv~G~g~--~~~~~~~~ 452 (461)
T PRK00421 410 GH-RDPIFVPDLEDLAELLAEVLKPGDLVLTMGAGD--ITKLARAL 452 (461)
T ss_pred cC-CceEEeCCHHHHHHHHHHhcCCCCEEEEECCCC--HHHHHHHH
Confidence 22 246678999999999999999999999999976 44444433
No 16
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.1e-50 Score=419.67 Aligned_cols=321 Identities=24% Similarity=0.297 Sum_probs=254.9
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcC---CCCCcEEEEeccCCCcchHHhhcccc
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI---DRAVDIAVLEMGMSGKGEILELARMA 207 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~---~~~~~~~V~E~g~~~~g~i~~~~~~~ 207 (487)
+.++|+||||||||||++||+++|+..|.++ ...|| +|.|++.... ..+.|++|+|+|+++. +. ...+
T Consensus 109 ~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~-~~~Gn----iG~~~~~~~~~~~~~~~d~~VlE~~~~~l---~~-~~~~ 179 (445)
T PRK04308 109 GDKVIAITGSNGKTTVTSLVGYLCIKCGLDT-VIAGN----IGTPVLEAELQREGKKADVWVLELSSFQL---EN-TESL 179 (445)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHHcCCCe-EEeCC----ccHHHHHHHHhhcCCCCcEEEEEeChHHh---Cc-Cccc
Confidence 3589999999999999999999998888775 45676 7877644322 3468999999996443 22 4568
Q ss_pred CCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEE
Q 011395 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVA 287 (487)
Q Consensus 208 ~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~ 287 (487)
+|+++|||||++||+++|+|+|+|+++|.+|++. ++.+|+|.||+....+.. .+.++++|+.+..+++....
T Consensus 180 ~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~~---~~~~i~n~dd~~~~~~~~-~~~~v~~~~~~~~~d~~~~~---- 251 (445)
T PRK04308 180 RPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKR-AGREVKWFSLEHEADFWLER---- 251 (445)
T ss_pred CCCEEEEecCChHHhcccCCHHHHHHHHHHHhcC---CCEEEEeCCcHHHHHHhh-cCCcEEEecCCCCCceeEec----
Confidence 9999999999999999999999999999999953 689999999998877652 23678899876545554322
Q ss_pred ecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 011395 288 NGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (487)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (487)
. .+ .+.+.+......++++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...+++++|||||+
T Consensus 252 -~-~~-~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~iDDs~~ 328 (445)
T PRK04308 252 -E-TG-RLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKIGEKNGVVFIDDSKG 328 (445)
T ss_pred -c-CC-EEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEeeCCeEEEEcCCC
Confidence 1 11 13232211111357899999999999999999999999999999999999999999999987678899999999
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEE
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVT 447 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~ 447 (487)
|||+|++++++.+. +++++|+|+|.+.++.+ .+.+.+.+. +|.|+++|+....+.+.+...+ ..+..+
T Consensus 329 ~n~~s~~~al~~~~-----~~~i~IlGg~~~~~~~~-----~~~~~l~~~-~~~vil~G~~~~~l~~~l~~~~-~~~~~~ 396 (445)
T PRK04308 329 TNVGATAAAIAGLQ-----NPLFVILGGMGKGQDFT-----PLRDALAGK-AKGVFLIGVDAPQIRRDLDGCG-LNLTDC 396 (445)
T ss_pred CCHHHHHHHHHhCC-----CCEEEEeCCCCCCCCHH-----HHHHHHHHh-CcEEEEECCCHHHHHHHHHhcC-CCeEec
Confidence 99999999998872 46899999987766543 344555554 7999999999888887764322 235678
Q ss_pred CCHHHHHHHHHhhCCCCCEEEE---ecC---------CCCcHHHHHHH
Q 011395 448 NDAEILSQKIVKRLKSNDVVLV---KGS---------RAMQMEKVVDV 483 (487)
Q Consensus 448 ~d~~~ai~~l~~~~~~~d~vLv---~GS---------r~~~~e~~~~~ 483 (487)
++.++|++.+.+.+++||+||+ +|| ||..|.+++..
T Consensus 397 ~~~e~a~~~~~~~~~~~d~VL~sp~~~S~d~f~~~~~Rg~~F~~~v~~ 444 (445)
T PRK04308 397 ATLEEAVQRAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKA 444 (445)
T ss_pred CCHHHHHHHHHHhCCCCCEEEEChhhhhhccccCHHHHHHHHHHHHHh
Confidence 9999999999999999999998 477 77788888765
No 17
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.2e-50 Score=416.91 Aligned_cols=317 Identities=22% Similarity=0.260 Sum_probs=253.4
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++|+||||||||||++||+++|+..|.++. +.|| +|.|... .+..+.+++|+|+|+++. . ....++|++
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~-~~gn----iG~~~~~-~~~~~~~~~V~E~ss~~l---~-~~~~~~p~i 177 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVA-VGGN----IGVPALD-LLEQDAELYVLELSSFQL---E-TTSSLKLKA 177 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEE-EEcc----cCHHHHh-hhcCCCCEEEEEcChhhh---c-cCcccCCCE
Confidence 5799999999999999999999988887754 5666 7888632 334567999999998765 2 234579999
Q ss_pred EEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCC
Q 011395 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (487)
Q Consensus 212 aViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~ 291 (487)
+|||||++||+++|||+|+|+++|.++++. .+.+|+|.||+....... ..++++||.+. .++.+.. ..
T Consensus 178 avitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~n~dd~~~~~~~~--~~~~~~~g~~~-~~~~~~~------~~ 245 (438)
T PRK04663 178 AAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVVNRDDKQTYPDHA--ELQLVTFGFDQ-QDFGLAQ------HQ 245 (438)
T ss_pred EEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEEeCCCHHHHhhhc--CCcEEEEecCC-CCCCeEe------cC
Confidence 999999999999999999999999999975 379999999998755432 25788998754 2333211 12
Q ss_pred eEEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCH
Q 011395 292 GVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370 (487)
Q Consensus 292 ~~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np 370 (487)
+..|.+..... ...++++++|.||++|+++|++++..+|+++++|+++|++|++++||||++...+++.+||||||+||
T Consensus 246 ~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idDs~~tn~ 325 (438)
T PRK04663 246 GREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAAGVDYRKALDALKSYTGLTHRCQVVADNHGIKWVNDSKATNV 325 (438)
T ss_pred CeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEeeeeCCcEEEeCCCcCCH
Confidence 33444432211 12467899999999999999999999999999999999999999999999976578899999999999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCH
Q 011395 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDA 450 (487)
Q Consensus 371 ~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~ 450 (487)
+|+.++++.+. . .+|+++|+|+|.+.|+. .++++.+.+.. +.|+++|+....+.+... .+.++++.
T Consensus 326 ~s~~~Al~~~~--~-~~~~i~IlGg~~~~~~~-----~~l~~~~~~~~-~~vi~~G~~~~~~~~~~~-----~~~~~~~~ 391 (438)
T PRK04663 326 ASTLAALSGLE--I-EGKLYLLVGGVGKGADF-----SPLKPVLATLN-LQLCCFGEDGDQFMPLHP-----SARRFDTM 391 (438)
T ss_pred HHHHHHHHhcc--c-CCcEEEEECCccCCCCH-----HHHHHHHHhhC-cEEEEECCCHHHHHHHhc-----cCeecCCH
Confidence 99999999885 2 36899999999887764 46777777663 689999999877655331 13467899
Q ss_pred HHHHHHHHhhCCCCCEEEEe-c--C---------CCCcHHHHHHHH
Q 011395 451 EILSQKIVKRLKSNDVVLVK-G--S---------RAMQMEKVVDVI 484 (487)
Q Consensus 451 ~~ai~~l~~~~~~~d~vLv~-G--S---------r~~~~e~~~~~l 484 (487)
++|++.+.+.+++||+||+. | | ||..|.+++..|
T Consensus 392 e~av~~~~~~~~~gd~VLlsp~~as~d~f~~~~~RG~~F~~~v~~~ 437 (438)
T PRK04663 392 EDAIESISPQLKSGDMVMLSPACASFDQFKNFMARGDAFAQLARQY 437 (438)
T ss_pred HHHHHHHHHhCCCCCEEEECcccccccCcCCHHHHHHHHHHHHHhh
Confidence 99999999889999999999 4 3 777888887654
No 18
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-49 Score=421.33 Aligned_cols=418 Identities=23% Similarity=0.228 Sum_probs=290.0
Q ss_pred cCHHHHHHHhCCeeccCCCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC------C-
Q 011395 27 WTINEIAESVNGKILKWGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN------W- 99 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~------~- 99 (487)
|.+.+++...|..+. .+|++...+....|+-+..|.++.+..|.++.+. ++..||+++.++. |
T Consensus 20 ~s~a~~L~~~G~~v~--------~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~--~~d~vv~sp~I~~~~~~~~~~ 89 (498)
T PRK02006 20 LAMARWCARHGARLR--------VADTREAPPNLAALRAELPDAEFVGGPFDPALLD--GVDLVALSPGLSPLEAALAPL 89 (498)
T ss_pred HHHHHHHHHCCCEEE--------EEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhc--CCCEEEECCCCCCcccccCHH
Confidence 456666666664432 3666554330012433323445554555566664 7888999875532 1
Q ss_pred -------CccEEE-EcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCc
Q 011395 100 -------DKGFVQ-VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNR 171 (487)
Q Consensus 100 -------~~~~i~-V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~ 171 (487)
++|++. ++ ...+.+..++ .|.+..++|+||||||||||++||+++|+..|+++. ..||.+..
T Consensus 90 ~~~a~~~~i~v~~~~e-----~~~~~~~~l~----~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gni~~~ 159 (498)
T PRK02006 90 VAAARERGIPVWGEIE-----LFAQALAALG----ASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA-VAGNISPA 159 (498)
T ss_pred HHHHHHCCCcEEEHHH-----HHHHHHhhhc----cccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE-EECCCCHH
Confidence 566662 22 2222222222 223345899999999999999999999998998875 45664321
Q ss_pred chhhhHhhc-CCCC--CcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeE
Q 011395 172 VGVALSLIG-IDRA--VDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVC 248 (487)
Q Consensus 172 ~g~p~~l~~-~~~~--~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~ 248 (487)
... .+.+ +..+ .+++|+|+++++. .....++|+++|||||++||+++|||+|+|+++|.++++ +++.+
T Consensus 160 ~~~--~~~~~~~~~~~~~~~V~E~ss~~l----~~~~~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~---~~~~~ 230 (498)
T PRK02006 160 ALD--KLMEAIDAGALPDVWVLELSSFQL----ETTHTLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG---PRTVR 230 (498)
T ss_pred HHH--HHHHhhccCCCCcEEEEEccHHHh----CcccccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC---CCCEE
Confidence 110 1111 2222 4899999986543 234557999999999999999999999999999999996 47899
Q ss_pred EEcCCcHHHHhhcCC-CCCcEEEEeCCCC---ceEEEEe-c--eEEecCCeEEEEEeec-----c-----------eEEE
Q 011395 249 VLNADDPLVANLTVP-RGVRKVFFGWRRG---CDVRLVA-A--QVANGGLGVQVVLEKE-----R-----------EMVK 305 (487)
Q Consensus 249 vln~Dd~~~~~~~~~-~~~~vi~~g~~~~---~d~~~~~-~--~i~~~~~~~~~~~~~~-----~-----------~~~~ 305 (487)
|+|.|||....+... ...++++||.... .++.+.. . .+........|.+... + ....
T Consensus 231 Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (498)
T PRK02006 231 VLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAPSRRRKKDAAPPPDIRLKRLMP 310 (498)
T ss_pred EEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEecCCeEEEEecCcccccccccccccccccccccccchhceee
Confidence 999999998877622 1246789986531 2333221 0 0000000111111000 0 0011
Q ss_pred -EEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccc
Q 011395 306 -FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (487)
Q Consensus 306 -~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~ 384 (487)
++++++|.||++|+++|++++..+|++++.++++|++|++++||||++...+++.+|||+|+|||+|+.++++.+
T Consensus 311 ~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~~~~g~~~idDs~~tn~~s~~~al~~~---- 386 (498)
T PRK02006 311 ADALRIRGLHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVELVATIDGVDYYDDSKGTNVGATVAALDGL---- 386 (498)
T ss_pred HhhcCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEECCEEEEEcCCCCCHHHHHHHHHhC----
Confidence 468999999999999999999999999999999999999999999999765788999999999999999999886
Q ss_pred cCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCC
Q 011395 385 CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSN 464 (487)
Q Consensus 385 ~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~ 464 (487)
.+|+++|+|+|.+.++ .+.+.+.+.+. +|.||++|+++..+.+.+...+ ..+..++++++|++++.+.+++|
T Consensus 387 -~~~ii~IlGg~~~~~~-----~~~~~~~l~~~-~~~vi~~G~~~~~i~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~g 458 (498)
T PRK02006 387 -AQRVVLIAGGDGKGQD-----FSPLAAPVARH-ARAVVLIGRDAPAIRAALAGTG-VPLVDAATLEEAVRAAAALAQPG 458 (498)
T ss_pred -CCCEEEEEcCCCCCCC-----HHHHHHHHHHh-CCEEEEEcCCHHHHHHHHhhCC-CceEecCCHHHHHHHHHHhcCCC
Confidence 2578999998755332 23344555555 7999999999999988774322 24667899999999999999999
Q ss_pred CEEEEe---cC---------CCCcHHHHHHHHH
Q 011395 465 DVVLVK---GS---------RAMQMEKVVDVIK 485 (487)
Q Consensus 465 d~vLv~---GS---------r~~~~e~~~~~l~ 485 (487)
|+||+. +| ||..|.++++.++
T Consensus 459 d~VLlsp~~~S~d~f~~~~~Rg~~F~~~v~~~~ 491 (498)
T PRK02006 459 DAVLLSPACASLDMFRNYAHRAEVFRAAVEELA 491 (498)
T ss_pred CEEEEChhhcccccccCHHHHHHHHHHHHHHHH
Confidence 999984 66 8888888888764
No 19
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=7.5e-50 Score=416.57 Aligned_cols=317 Identities=26% Similarity=0.346 Sum_probs=252.2
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhh-hHhhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA-LSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p-~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++|+||||||||||++||+++|+..|+++. ..|| +|.| ++++.. .+.+++|+|+|+++. . ..+.++|+
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~-~~gn----ig~~~~~~~~~-~~~~~~V~E~~~~~l---~-~~~~~~p~ 171 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAF-LGGN----IGTPALEVLDQ-EGAELYVLELSSFQL---E-TTESLRPE 171 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeE-EECc----cCHHHHHHHhc-cCCCEEEEEcChhHh---c-CCcccCCC
Confidence 6899999999999999999999988888753 4565 6777 444332 578999999986432 2 34567999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecC
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (487)
++|||||++||+++|||+|+|+++|.++++.+++++.+|+|.||+.+..+..+..+++++||.+...+.. +....
T Consensus 172 iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~ 246 (433)
T TIGR01087 172 IALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADDPRFARLAQKSKAQVIWFSVEKDAERG-----LCIRD 246 (433)
T ss_pred EEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHhhhhcCceEEEEeCCccCCCc-----eEEEC
Confidence 9999999999999999999999999999999888999999999998776653223688999865322211 11111
Q ss_pred CeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCH
Q 011395 291 LGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANP 370 (487)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np 370 (487)
++..|.. . .++++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++++|+|+|+|||
T Consensus 247 ~~~~~~~--~----~~~l~l~G~hn~~Na~aAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~g~~~idD~~atn~ 320 (433)
T TIGR01087 247 GGLYLKP--N----DLEGSLLGLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNGVHFYNDSKATNV 320 (433)
T ss_pred CEEEEec--c----ccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEEEEEcCCCCCH
Confidence 2222211 1 367899999999999999999999999999999999999999999999976578999999889999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCH
Q 011395 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDA 450 (487)
Q Consensus 371 ~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~ 450 (487)
+|+.++++.+. +++++|+|+|.+.++ +.++.+.+... .+.++++|+.+..+.+.+...+ ..+.++++.
T Consensus 321 ~a~~~al~~~~-----~~ii~I~Gg~~~~~d-----~~~~~~~l~~~-~~~v~~~G~~~~~l~~~~~~~~-~~~~~~~~~ 388 (433)
T TIGR01087 321 HATLAALSAFD-----NPVILIVGGDDKGAD-----FSPLAPAAAGK-VKAVLAIGEDAAKIAPLLKEAG-LSVYLVESL 388 (433)
T ss_pred HHHHHHHHhCC-----CCEEEEEcCCCCCCC-----HHHHHHHHHhh-CCEEEEECCCHHHHHHHHHhCC-CcEEEeCCH
Confidence 99999999873 368999997654332 35667777665 7899999999998888875432 235678899
Q ss_pred HHHHHHHHhhCCCCCEEEEecC------------CCCcHHHHH
Q 011395 451 EILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVV 481 (487)
Q Consensus 451 ~~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~ 481 (487)
++|++.+.+.+++||+||++|. ||..|.+++
T Consensus 389 ~~a~~~~~~~~~~gdiVLlspa~as~d~f~~~~~RG~~F~~~v 431 (433)
T TIGR01087 389 EEAVQAAREVASPGDVVLLSPACASFDQFKSYEERGEKFKELV 431 (433)
T ss_pred HHHHHHHHHhcCCCCEEEECccchhhccccCHHHHHHHHHHHH
Confidence 9999999998999999999965 666666655
No 20
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.5e-49 Score=414.02 Aligned_cols=324 Identities=23% Similarity=0.249 Sum_probs=256.9
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++|+||||||||||++||+++|+..|+++. ..|| +|.|... .+..+.+++|+|+|+++. +.++.++|++
T Consensus 108 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~-~ggn----ig~p~~~-~~~~~~~~~V~E~ss~~l----~~~~~~~P~i 177 (448)
T PRK03803 108 APVIAITGSNGKSTVTTLVGEMAKAAGKRVA-VGGN----IGTPALD-LLSDDPELYVLELSSFQL----ETTHSLNAEV 177 (448)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeE-EecC----cCHHHHH-HhcCCCCEEEEEcChhhh----CcCcccCccE
Confidence 5799999999999999999999988887653 5666 6777632 223467999999987653 3456689999
Q ss_pred EEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCC--ceEEEEeceEEec
Q 011395 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--CDVRLVAAQVANG 289 (487)
Q Consensus 212 aViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~--~d~~~~~~~i~~~ 289 (487)
+|||||++||+++|||+|+|+++|.++++. .+.+|+|.||+....+... ..++++||.+.. .++. +...
T Consensus 178 aVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~-----~~~~ 248 (448)
T PRK03803 178 ATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVFNRDDALTRPLVPD-NQPCLSFGLNAPDFDEWG-----LREG 248 (448)
T ss_pred EEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEEeCCCHHHHHHhhc-CCcEEEEeCCCCCcCceE-----EEec
Confidence 999999999999999999999999999974 5789999999988776521 257889986421 1222 1111
Q ss_pred CCeEEEEEeecceE-EEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 011395 290 GLGVQVVLEKEREM-VKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (487)
Q Consensus 290 ~~~~~~~~~~~~~~-~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~ 368 (487)
.+..|.+.+.... ..++++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...+++.+|||+|+|
T Consensus 249 -~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~gv~~idDs~at 327 (448)
T PRK03803 249 -DGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAAGLPKEAMLEVLRTFTGLPHRCEWVREVAGVDYYNDSKGT 327 (448)
T ss_pred -CCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCeEEEEcCCcC
Confidence 2223433322111 13678999999999999999999999999999999999999999999999865788999998899
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEEC
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTN 448 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~ 448 (487)
||+|+.++++.+++.. .+|+++|+|+|.+.++ .+.+.+.+.+. ++.++++|+.+..+.+.+... ..+..++
T Consensus 328 N~~a~~~al~~l~~~~-~~~iilI~Gg~~k~~d-----~~~l~~~l~~~-~~~vil~G~~~~~i~~~l~~~--~~~~~~~ 398 (448)
T PRK03803 328 NVGATVAAIEGLGAHI-QGKLVLIAGGDGKGAD-----FSPLREPVAKY-VRAVVLIGRDADKIAAALGGA--VPLVRVA 398 (448)
T ss_pred CHHHHHHHHHhhhhcC-CCCEEEEECCCCCCCC-----HHHHHHHHHhh-CCEEEEECCCHHHHHHHHhcC--CCEEEeC
Confidence 9999999999997643 3579999998765332 33566777666 799999999999988877432 2366789
Q ss_pred CHHHHHHHHHhhCCCCCEEEE---ecC---------CCCcHHHHHHHH
Q 011395 449 DAEILSQKIVKRLKSNDVVLV---KGS---------RAMQMEKVVDVI 484 (487)
Q Consensus 449 d~~~ai~~l~~~~~~~d~vLv---~GS---------r~~~~e~~~~~l 484 (487)
+.++|++.+.+.+++||+||+ +|| ||..|.++++.|
T Consensus 399 ~~~~a~~~a~~~a~~gdvVL~SPa~aSfd~f~~~~~RG~~F~~~v~~~ 446 (448)
T PRK03803 399 TLAEAVAKAAELAQAGDIVLLSPACASLDMFKNFEARGDDFRQAVEAL 446 (448)
T ss_pred CHHHHHHHHHHhCCCCCEEEeCchhhcccccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998 477 888888888765
No 21
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.3e-48 Score=408.21 Aligned_cols=320 Identities=21% Similarity=0.228 Sum_probs=247.4
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCCceE----ecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccc--
Q 011395 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF----QSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM-- 206 (487)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~----~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~-- 206 (487)
++||||||||||||++||+++|++.|+++. .+.|| +|.|..+ .+.|++|+|+|+++.+++..+.++
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~gn----~G~~~~~----~~~~~~V~E~~s~~~~~~~~l~~~~~ 174 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGN----FGVSARL----GESPFFVIEADEYDTAFFDKRSKFVH 174 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCccccc----Ccccccc----CCCCEEEEEccCcCccccccccceee
Confidence 499999999999999999999998888853 45566 4777642 357999999999998887777666
Q ss_pred cCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC-CCCCcEEEEeCCCCceEEEEece
Q 011395 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLVAAQ 285 (487)
Q Consensus 207 ~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~-~~~~~vi~~g~~~~~d~~~~~~~ 285 (487)
++|+++|||||++||+++|+|+|+|+++|.+|++.+++.+.+|+|.||+.+..+.. ....++.+|+.. .++....
T Consensus 175 ~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-- 250 (448)
T TIGR01081 175 YRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQ--GEWQAEK-- 250 (448)
T ss_pred cCCCEEEEeCCChHhccccCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCC--CCEEEEE--
Confidence 59999999999999999999999999999999998777889999999998876542 111356677642 3555544
Q ss_pred EEecCCeEEEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEe
Q 011395 286 VANGGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVND 364 (487)
Q Consensus 286 i~~~~~~~~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~D 364 (487)
+. .++..|.+...+ ....++++++|.||++|+++|++++..+|++.+.++++|++|++++||||++...+++.+|+|
T Consensus 251 ~~--~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~~~~g~~ii~D 328 (448)
T TIGR01081 251 IT--ADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIAAARHVGVAIEDACEALGSFVNAKRRLELKGEANGITVYDD 328 (448)
T ss_pred Ee--cCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCeEEEEe
Confidence 43 233444443221 212577899999999999999999999999999999999999999999999975467899999
Q ss_pred cCCCCHHHHHHHHHHHHccccCCcEEEEEcC---CCCCCcccHHHHHHHHHHHHHcCCCEEEEECccH--HHHHHHhhhh
Q 011395 365 AYNANPISTRAAIDLLKDIACNGKRVVILGD---MLELGSTERESHEKILSYCCDACIDLIGLVGDRF--RAAAENMNLI 439 (487)
Q Consensus 365 sya~np~s~~~~l~~l~~~~~~~~~i~Vlg~---m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~--~~i~~~~~~~ 439 (487)
|||||+|++++++++++..+.+|+++|+|. |.|+|...+ ++...+ +. +|.++++|... ..+.+.+...
T Consensus 329 -~ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~~~~~lg~~~~----~l~~~~-~~-~d~vi~~~~~~~~~~~~~~~~~~ 401 (448)
T TIGR01081 329 -FAHHPTAIEATLQGLRQKVGGARILAVLEPRSNTMKLGVHKD----DLAPSL-GR-ADQVFLYQPGQIPWDVAEVAAQC 401 (448)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCeEEEEECCCcchhhhhhHHH----HHHHHH-Hh-CCEEEEcCCCCCccCHHHHHHhc
Confidence 699999999999999876534567899984 333442222 233333 33 89999997542 2244433222
Q ss_pred cCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCC
Q 011395 440 KTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRA 474 (487)
Q Consensus 440 ~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~ 474 (487)
. ..+..+++.+++++.+.+.+++||+||++|+.+
T Consensus 402 ~-~~~~~~~~~~~a~~~~~~~a~~gd~VLv~gag~ 435 (448)
T TIGR01081 402 V-QPANVSADFDAFVAMIVKNAQPGDHILVMSNGG 435 (448)
T ss_pred C-CCeEEcCCHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1 235567899999999999999999999999874
No 22
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.5e-49 Score=412.09 Aligned_cols=322 Identities=24% Similarity=0.316 Sum_probs=247.8
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhH-hhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~-l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++||||||||||||++||+++|+..|+++. +.|| +|.|++ .+....+.+++|+|+|+++. .+...++||
T Consensus 121 ~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gn----ig~p~~~~l~~~~~~~~~V~E~ss~~l----~~~~~~~pd 191 (473)
T PRK00141 121 RTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQ-AVGN----IGVPVSAALVAQPRIDVLVAELSSFQL----HWSPTLTPD 191 (473)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHhcCCcEE-Eecc----CChhHHHHHhcCCCCCEEEEecCCccc----ccCcccCCC
Confidence 3799999999999999999999988888764 6777 677765 34445678999999997654 234568999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCC-CCCcEEEEeCCCCc--e--EEEEece
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC--D--VRLVAAQ 285 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~--d--~~~~~~~ 285 (487)
++|||||++||+++|+|+|+|+++|.++++ .+.+|+|.||+.+..+..+ ...++++||..... + +....
T Consensus 192 iaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 265 (473)
T PRK00141 192 VGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GPVAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGE-- 265 (473)
T ss_pred EEEEcCCChhhccccCCHHHHHHHHHHHhh----CCEEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCE--
Confidence 999999999999999999999999999995 3689999999998776521 12468899875321 2 22112
Q ss_pred EEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEec
Q 011395 286 VANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (487)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds 365 (487)
+.....+..+.+.. .+.++++|.||++|+++|++++..+|++.+.++++|++|++++||||++...++..+||||
T Consensus 266 ~~~~~~~~~~~~~~-----~~~~~l~G~hn~~Na~aA~a~~~~lgi~~~~i~~~l~~~~~~~~R~e~~~~~~~~~iiDds 340 (473)
T PRK00141 266 LVDNAFGQNVVLAS-----AEGISPAGPAGVLDALAAAAVARSQGVAPEAIARALSSFEVAGHRGQVVAEHGGVTWIDNS 340 (473)
T ss_pred EEEecCCCceEEee-----hhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHhhCCCCCCceEEEEEeCCEEEEEcC
Confidence 22111122222211 2467899999999999999999999999999999999999988999999865688999999
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcC-CeE
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKT-DYI 444 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~-~~~ 444 (487)
|||||+|++++++.++ ++++|+|+| ..++..+.+.+.+... .+.++++|.....+.+.+..... ..+
T Consensus 341 yahNp~s~~~~l~~l~------~~~~i~gG~-----~kdkd~~~~~~~l~~~-~~~~~~~~~~r~~~~~~l~~~~~~~~~ 408 (473)
T PRK00141 341 KATNPHAADAALAGHE------SVVWVAGGQ-----LKGADIDDLIRTHAPR-IKAAVVLGVDRAEIVAALAEHAPDAPV 408 (473)
T ss_pred CCCCHHHHHHHHHhcC------CEEEEecCc-----cCCCChHHHHHHHHhh-ccEEEEECCCHHHHHHHHHhcCCCCcE
Confidence 9999999999999883 468888643 2344556666666665 67788888777677777754321 123
Q ss_pred EE--ECCH----HHHHHHHHhhCCCCCEEEEe---cC---------CCCcHHHHHHHHH
Q 011395 445 VV--TNDA----EILSQKIVKRLKSNDVVLVK---GS---------RAMQMEKVVDVIK 485 (487)
Q Consensus 445 ~~--~~d~----~~ai~~l~~~~~~~d~vLv~---GS---------r~~~~e~~~~~l~ 485 (487)
.. ++|+ ++|++.+.+.+++||+||+. .| ||..|.+++..|.
T Consensus 409 ~~~~~~~~~~~l~~Av~~a~~~a~~gd~VllsPa~aS~d~f~~~~~RG~~F~~~v~~l~ 467 (473)
T PRK00141 409 TVTDSTDPEEAMEEAVSAAVSLAEPGDTVLLAPAAASLDMYTGMGQRGDLFAEAARRTI 467 (473)
T ss_pred EEecCcccccCHHHHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHHHH
Confidence 22 3344 99999999999999999998 33 8889999998764
No 23
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.9e-49 Score=414.93 Aligned_cols=361 Identities=24% Similarity=0.297 Sum_probs=271.7
Q ss_pred CceEEEeccccCCC-CccEEEEcCCCCccHHHH----HHHHHHHHhhc---CCCCcEEEEeCCCChHhHHHHHHHHHHhC
Q 011395 86 GCVGVIGNQVCNNW-DKGFVQVEGNGNVNTLNS----LVNMACYARNS---RFSGVLVGVTGSVGKSTTKSMIALALESL 157 (487)
Q Consensus 86 Ga~~~v~~~~~~~~-~~~~i~V~~~~~~d~~~a----L~~la~~~~~p---~~~~~vI~VTGTnGKTTT~~ml~~iL~~~ 157 (487)
++..||.++.++.. .-+...|. +.+++ +.++..+++.- ..+.++|+||||||||||++||+++|+..
T Consensus 65 ~~d~vv~sp~i~~~~~~~~~~v~-----~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 65 GFAALVLSPGVPLTHPKPHWVVD-----LARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred CCCEEEECCCCCccCCcccHHHH-----HHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 56777877765421 01133455 66665 55555433320 23578999999999999999999999888
Q ss_pred CCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHh
Q 011395 158 GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGE 237 (487)
Q Consensus 158 g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~ 237 (487)
|+++. +.|| +|.|++.+....+.+++|+|+|+++ + +.++.++|+++|||||++||+++|||+|+|+++|++
T Consensus 140 g~~~~-~~gn----ig~~~~~~~~~~~~~~~V~E~~~~~---l-d~t~~i~P~iaVITNI~~DHld~lgsle~ia~~K~~ 210 (460)
T PRK01390 140 GRDVQ-MGGN----IGTAVLTLEPPPAGRVYVLELSSYQ---I-DLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKER 210 (460)
T ss_pred CCCeE-EcCc----cchhhhhcccCCCCCEEEEEcCccc---c-ccccccCCCEEEEecCChhHhcccCCHHHHHHHHHH
Confidence 87763 5565 7888877665567899999999754 2 456678999999999999999999999999999999
Q ss_pred hcccCCCCCeEEEcCCcHHHHhhcC---CCCCcEEEEeCCCC--ceEEEEeceEEecCCeEEEEEeecce--EEEE--Ee
Q 011395 238 IFQESKLGDVCVLNADDPLVANLTV---PRGVRKVFFGWRRG--CDVRLVAAQVANGGLGVQVVLEKERE--MVKF--VI 308 (487)
Q Consensus 238 i~~~~~~~~~~vln~Dd~~~~~~~~---~~~~~vi~~g~~~~--~d~~~~~~~i~~~~~~~~~~~~~~~~--~~~~--~l 308 (487)
|++..++ +.+|+|.||+.+..+.. +.++++++|+.+.. .+++..+ +..|....... ...+ .+
T Consensus 211 ii~~~~~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 281 (460)
T PRK01390 211 LFAGQGP-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYADG--------GKLVDARGGRQVEIADLRGIP 281 (460)
T ss_pred HHhcCCC-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEeC--------CEEEEecCCCcceeeeHHhhc
Confidence 9998777 99999999998776651 12357888886532 2222111 22232221100 0011 15
Q ss_pred CCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCc
Q 011395 309 PSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGK 388 (487)
Q Consensus 309 ~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~ 388 (487)
+++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...++..+|||||||||+|++++|+.+ ++
T Consensus 282 ~l~G~hn~~Na~aAiaa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~~~~g~~vIdDs~ahNp~s~~~aL~~~------~~ 355 (460)
T PRK01390 282 SLPGAHNAQNAAAAYAAARALGLSPEEIAAGLASFPGLAHRMEQVGRRGGVLFVNDSKATNADAAAKALSSF------DR 355 (460)
T ss_pred cCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEeeeCCcEEEEcCCCCCHHHHHHHHHhC------CC
Confidence 799999999999999999999999999999999999999999999865678999999999999999988865 36
Q ss_pred EEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhC----CCC
Q 011395 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRL----KSN 464 (487)
Q Consensus 389 ~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~----~~~ 464 (487)
+++|+|++ +.+...+.+.+.+ +. ++.++++|.++..+.+.++.. ..+..+++.++|++.+.+.+ ++|
T Consensus 356 i~~I~G~~-----d~~~~~~~L~~~~-~~-v~~v~~~g~~~~~l~~~~~~~--~~~~~~~~l~~Av~~a~~~a~~~~~~g 426 (460)
T PRK01390 356 IYWIAGGK-----PKEGGIESLAPFF-PR-IAKAYLIGEAAEAFAATLGGA--VPFEICGTLERAVAAAAADAAADGAPE 426 (460)
T ss_pred eEEEecCc-----cCCCCHHHHHHHH-Hh-hCEEEEECCCHHHHHHHHhcC--CCEEEeCCHHHHHHHHHHhhhccCCCC
Confidence 88899853 2223344555554 33 788999999999999888643 24667899999999999999 999
Q ss_pred CEEEEe-c--C---------CCCcHHHHHHHH
Q 011395 465 DVVLVK-G--S---------RAMQMEKVVDVI 484 (487)
Q Consensus 465 d~vLv~-G--S---------r~~~~e~~~~~l 484 (487)
|+||+. | | ||..|.++++.|
T Consensus 427 ~~vllsP~~as~d~f~~~~~rg~~f~~~~~~~ 458 (460)
T PRK01390 427 PVVLLSPACASFDQFKNFEVRGDAFRELVAAL 458 (460)
T ss_pred CEEEeChhhhccccccCHHHHHHHHHHHHHHh
Confidence 999999 3 3 777888887765
No 24
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=5.8e-48 Score=403.45 Aligned_cols=325 Identities=22% Similarity=0.285 Sum_probs=254.5
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCce-EecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++|+||||||||||++||+++|+..|+++ ....||. +.|..- ......+++|+|+|+++.. . ..++|+
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~----~~~~~~-~~~~~~~~~V~E~s~~q~~-~----~~~~p~ 168 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLV----KEAGTN-ARLGSGEYLVAEADESDAS-F----LHLQPN 168 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECccc----ccCCcc-cccCCCCEEEEECCCccch-H----hhccCC
Confidence 479999999999999999999998888733 2233442 222110 1113469999999976542 1 347999
Q ss_pred EEEEcCCChhhhh-cCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCC-CCceEEEEeceEEe
Q 011395 211 IRVVLNVGDSHLE-SLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWR-RGCDVRLVAAQVAN 288 (487)
Q Consensus 211 vaViTNI~~dHl~-~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~-~~~d~~~~~~~i~~ 288 (487)
++|||||++||++ +|+|+|+|+++|.++++.+++++.+|+|.||+....+......++++|+.. +.+++.+.. +..
T Consensus 169 vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~ 246 (448)
T TIGR01082 169 VAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKATEQVITYGGSGEDADYRAEN--IQQ 246 (448)
T ss_pred EEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEE--EEe
Confidence 9999999999999 889999999999999998888899999999998877662222478899875 345676655 544
Q ss_pred cCCeEEEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 011395 289 GGLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (487)
Q Consensus 289 ~~~~~~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (487)
......|.+...+ ....+.++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++.+|+| ||
T Consensus 247 ~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~~~~gv~~i~D-~a 325 (448)
T TIGR01082 247 SGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAILRALANFQGVKRRFEILGEFGGVLLIDD-YA 325 (448)
T ss_pred cCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCccceEEEEeCCeEEEEc-CC
Confidence 4445566664332 222678899999999999999999999999999999999999999999999976578999999 99
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcc-cHHHHHHHHHHHHHcCCCEEEEE-----------CccHHHHHHH
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGST-ERESHEKILSYCCDACIDLIGLV-----------GDRFRAAAEN 435 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~-~~~~~~~~~~~l~~~~~d~vi~~-----------g~~~~~i~~~ 435 (487)
|||+++++++++++.+.+.+|+++|+|. .|.. .+..+.++.+.+.. +|.++++ |.....+.+.
T Consensus 326 hn~~~~~a~~~al~~~~~~~~ii~i~g~---~~~~r~k~~~~~~~~~l~~--~d~v~l~~~~~~~~~~~~g~~~~~i~~~ 400 (448)
T TIGR01082 326 HHPTEIKATLKAARQGYPDKRIVVVFQP---HRYSRTRDLFDDFAKVLSD--ADELILLDIYAAGEEPINGIDGKSLARK 400 (448)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECC---CCCccHHHHHHHHHHHHHh--CCEEEEecccCCCCCCCCCCCHHHHHHH
Confidence 9999999999999987534578888874 1222 34555788888864 8999998 5556778887
Q ss_pred hhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCC
Q 011395 436 MNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRA 474 (487)
Q Consensus 436 ~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~ 474 (487)
+...+...+..++++++|++.+.+.+++||+||++|+..
T Consensus 401 ~~~~~~~~~~~~~~~~~a~~~a~~~a~~gD~VLl~G~g~ 439 (448)
T TIGR01082 401 ITQLGKIEPYFVPDLAELVEFLAAVLQSGDLILTMGAGD 439 (448)
T ss_pred HhhcCCCceEEeCCHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 764321235678999999999999999999999999874
No 25
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-49 Score=415.56 Aligned_cols=323 Identities=25% Similarity=0.321 Sum_probs=251.0
Q ss_pred HHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhh-cCCCCCcEEEEeccCCCcch
Q 011395 121 MACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GIDRAVDIAVLEMGMSGKGE 199 (487)
Q Consensus 121 la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~-~~~~~~~~~V~E~g~~~~g~ 199 (487)
++.+++. .. .++|+||||||||||++||+++|+..|..+ ...|| +|.|++.. ....+.+++|+|+|+++.+.
T Consensus 99 ~~~~~~~-~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~-~~~g~----ig~~~~~~~~~~~~~~~~v~E~~~~~~~~ 171 (450)
T PRK14106 99 VELAYRF-SK-APIVAITGTNGKTTTTTLLGEIFKNAGRKT-LVAGN----IGYPLIDAVEEYGEDDIIVAEVSSFQLET 171 (450)
T ss_pred HHHHHhh-cC-CCEEEEeCCCchHHHHHHHHHHHHHcCCCe-EEeCc----ccHHHHHHHhcCCCCCEEEEEcChhhhcc
Confidence 3444443 33 789999999999999999999997777554 45666 78887643 22346899999999865532
Q ss_pred HHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCC--c
Q 011395 200 ILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRG--C 277 (487)
Q Consensus 200 i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~--~ 277 (487)
...++|+++|||||+.||+++|||+|+|+++|+++++..++.+.+++|.||+....+....++++++||.+.. .
T Consensus 172 ----~~~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vln~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (450)
T PRK14106 172 ----IKEFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTRSLAKKAKARVIFFSRKSLLEE 247 (450)
T ss_pred ----ccccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHhhcCceEEEEecCccCcC
Confidence 2457999999999999999999999999999999999888899999999999877766323467889986531 1
Q ss_pred eEEEEeceEEecCCeEEEEEeecce-EE-EEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee
Q 011395 278 DVRLVAAQVANGGLGVQVVLEKERE-MV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS 355 (487)
Q Consensus 278 d~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~ 355 (487)
++.. ......+...+... .. .+++|++|.||++|+++|++++..+|+++++++++|++|+++|||||++..
T Consensus 248 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~e~i~~ 320 (450)
T PRK14106 248 GVFV-------KNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAYLLGISPDVIANTLKTFKGVEHRIEFVAE 320 (450)
T ss_pred ceEE-------ECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEee
Confidence 1111 11222333322110 00 136899999999999999999999999999999999999999999999875
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHH
Q 011395 356 RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAEN 435 (487)
Q Consensus 356 ~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~ 435 (487)
.++..+|+|+|||||+|++++++.++ +++++|+|.|. .++.++++.+.+... +|.++++|+.+.++.+.
T Consensus 321 ~~~~~vi~D~~ahNP~s~~~~l~~l~-----~~~i~v~g~~~-----~~k~~~~~~~~l~~~-~~~vi~~g~~~~~l~~~ 389 (450)
T PRK14106 321 INGVKFINDSKGTNPDAAIKALEAYE-----TPIVLIAGGYD-----KGSDFDEFAKAFKEK-VKKLILLGETAQEIAEA 389 (450)
T ss_pred ECCEEEEeCCCccCHHHHHHHHHhCC-----CCeEEEeCCcC-----CCCCHHHHHHHHHhh-CCEEEEEcCCHHHHHHH
Confidence 46788999989999999999999883 35788887652 233456677767654 89999999999988887
Q ss_pred hhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecC
Q 011395 436 MNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGS 472 (487)
Q Consensus 436 ~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GS 472 (487)
+...+..++.++++++++++.+.+.++++|+||++|.
T Consensus 390 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~d~ilv~~~ 426 (450)
T PRK14106 390 ARKYGFDNILFAETLEEAVKKAYEIAKPGDVVLLSPA 426 (450)
T ss_pred HhhCCCCcEEEeCCHHHHHHHHHHhCCCCCEEEEChh
Confidence 7533222356789999999999988899999999987
No 26
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-48 Score=395.81 Aligned_cols=322 Identities=27% Similarity=0.369 Sum_probs=258.6
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhH-hhcCCCCCcEEEEeccCCCcchHHhhccccCC
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~-l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~p 209 (487)
..|+|+||||||||||++||+++|++.|+++. ..|| ||.|.. +.......|+.|+|+|+.+. +. +.-++|
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~-lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQL---~~-~~~~~P 179 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL-LGGN----IGTPALELLEQAEPADVYVLELSSFQL---ET-TSSLRP 179 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCce-eccc----cCccHHHhhcccCCCCEEEEEcccccc---cc-CccCCc
Confidence 46799999999999999999999999999875 5677 888863 44444578999999976543 33 334799
Q ss_pred cEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCC-CCCcEEEEeCCCCc--eEEEEeceE
Q 011395 210 EIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP-RGVRKVFFGWRRGC--DVRLVAAQV 286 (487)
Q Consensus 210 dvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~-~~~~vi~~g~~~~~--d~~~~~~~i 286 (487)
+++|||||++||||||+|+|+|..+|.+|+.++.+ ++|+|.||+++..+..+ ....+++|+..... .+++.++.+
T Consensus 180 ~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~ 257 (448)
T COG0771 180 EIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257 (448)
T ss_pred cEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEeCCcHHHhhhhhhcccceeEEEEccccccccceeecchh
Confidence 99999999999999999999999999999998654 99999999999887722 22466777765532 222222001
Q ss_pred EecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecC
Q 011395 287 ANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (487)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsy 366 (487)
. +.+..-...-.++++|.||++|++||+|+|..+|++++.|.++|++|+++++|||.+...+++.+|+||.
T Consensus 258 -------~--~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSK 328 (448)
T COG0771 258 -------V--FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSK 328 (448)
T ss_pred -------c--cccccccchhhcCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEecCCEEEecCCC
Confidence 0 1111000133678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEE
Q 011395 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVV 446 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~ 446 (487)
|.||+|...+|+.+. +++++|+|+. ........+.+.+.+. ...+|++|+....+.+.+.+... .+..
T Consensus 329 ATN~~At~~AL~~~~-----~~v~lI~GG~-----~Kg~df~~L~~~~~~~-~~~~~~~G~~~~~i~~~l~~~~~-~~~~ 396 (448)
T COG0771 329 ATNVDATLAALSGFD-----GPVILIAGGD-----DKGADFSPLAEILAKV-IKKLVLIGEDAEKIAAALKEAGP-SLVI 396 (448)
T ss_pred CCCHHHHHHHHHcCC-----CCEEEEECCC-----CCCCChhHHHHHhhhc-ceEEEEeCCCHHHHHHHHHhcCC-ceee
Confidence 999999999998884 5789999853 3223356777777775 67799999999999999876542 3678
Q ss_pred ECCHHHHHHHHHhhCCCCCEEEEe---cC---------CCCcHHHHHHHH
Q 011395 447 TNDAEILSQKIVKRLKSNDVVLVK---GS---------RAMQMEKVVDVI 484 (487)
Q Consensus 447 ~~d~~~ai~~l~~~~~~~d~vLv~---GS---------r~~~~e~~~~~l 484 (487)
+.+.++|++.+.+.+++||+||+. .| ||..|.+++..+
T Consensus 397 ~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~l 446 (448)
T COG0771 397 CETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSEL 446 (448)
T ss_pred cCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHHHHHHh
Confidence 899999999999999999999998 33 777777777665
No 27
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-48 Score=407.59 Aligned_cols=323 Identities=26% Similarity=0.294 Sum_probs=256.3
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhh-cCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLI-GIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~-~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++|+||||||||||++||+++|+..|..+ ...|| +|.|.+.+ ....+.+++|+|+++.+.. ....++|+
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~-~~~Gn----ig~p~~~~~~~~~~~~~~V~E~ss~~~~----~~~~~~P~ 178 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHA-LLAGN----IGYPASEVAQKATADDTLVMELSSFQLM----GIETFRPH 178 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCe-EEEcc----cChhhHHHHhcCCCCCEEEEEcCchhhC----cccccCCC
Confidence 579999999999999999999998887665 46676 68887643 3345679999999765432 24567999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCc--eEEEEeceEEe
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC--DVRLVAAQVAN 288 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~--d~~~~~~~i~~ 288 (487)
++|||||++||+++|||+|+|+++|.+|++..++.+.+|+|.||+....+..+...++++|+.+... +++..+
T Consensus 179 iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 253 (447)
T PRK02472 179 IAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVINFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKD----- 253 (447)
T ss_pred EEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHhhcCceEEEeecCCCCcCceEEEC-----
Confidence 9999999999999999999999999999998888899999999998876653223578888865321 121111
Q ss_pred cCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 011395 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~ 368 (487)
+ .+.+.+......++++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++.+|+|+|||
T Consensus 254 --~--~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~g~~vi~D~~a~ 329 (447)
T PRK02472 254 --G--ALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREVLSTFSGVKHRLQYVGTIDGRKFYNDSKAT 329 (447)
T ss_pred --C--EEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcceEEEEECCeEEEECCCCC
Confidence 1 122222101112368999999999999999999999999999999999999999999999754689999998899
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEEC
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTN 448 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~ 448 (487)
||+|+.++++.+ .+++++|+|. .+.++.+.++++.+.. +|.|+++|+.+..+.+.+...+ .++.+++
T Consensus 330 N~~s~~~al~~~-----~~~ii~I~g~-----~~~~~~~~~l~~~l~~--~~~v~~~G~~~~~l~~~~~~~~-~~~~~~~ 396 (447)
T PRK02472 330 NILATQKALSGF-----NQPVVLLAGG-----LDRGNEFDELVPYLKN--VKAMVVFGETAEKLARAAEKAG-ITVVEAD 396 (447)
T ss_pred CHHHHHHHHHhC-----CCCEEEEECC-----CCCCCCHHHHHHHHhc--cCEEEEECCCHHHHHHHHHhCC-CceEEcC
Confidence 999999988876 2568899984 2223567888888874 7999999999988888775432 2456789
Q ss_pred CHHHHHHHHHhhCCCCCEEEEecC------------CCCcHHHHHHHHH
Q 011395 449 DAEILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVVDVIK 485 (487)
Q Consensus 449 d~~~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~~~l~ 485 (487)
+.++|++.+.+.+++||+||+++. ||..|.+++..++
T Consensus 397 ~~~~a~~~~~~~~~~~d~VLls~a~~s~d~f~~~~~Rg~~F~~~v~~~~ 445 (447)
T PRK02472 397 NVEDAVPKAYELSEPGDVILLSPACASWDQYKTFEERGDEFIKAVEELK 445 (447)
T ss_pred CHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHHHHhc
Confidence 999999999888999999999965 7888888887764
No 28
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.4e-48 Score=407.18 Aligned_cols=327 Identities=21% Similarity=0.258 Sum_probs=251.0
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcC-----CCCCcEEEEeccCCCcchHHhhcc
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-----DRAVDIAVLEMGMSGKGEILELAR 205 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~-----~~~~~~~V~E~g~~~~g~i~~~~~ 205 (487)
+.++|+||||||||||++||+++|+..|.++. ..|| +|.|++.+.. ..+.|++|+|+|++. ++.. +
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~-~~gn----iG~~~~~~~~~~~~~~~~~d~~VlE~~s~~---l~~~-~ 178 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAP-ACGN----IGYAACELALLRSGKAQKPDWIVAELSSYQ---IESS-P 178 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeE-Eecc----cChhHHHHHhhhhccCCCCCEEEEEccccc---cccC-c
Confidence 46899999999999999999999988887764 3455 7888765433 457899999999642 2322 3
Q ss_pred ccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCC-CceEEEEec
Q 011395 206 MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR-GCDVRLVAA 284 (487)
Q Consensus 206 ~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~-~~d~~~~~~ 284 (487)
.++|+++|||||++||+++|||+|+|+++|++|++. ++.+|+|.||+.+..+.... .+.++|+... ..++...+
T Consensus 179 ~~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~~---~~~~Vln~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 253 (459)
T PRK02705 179 ELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLER---SEIRILNGDDPYLRQHRSSW-PKGYWTSTQGKASLLGQAD- 253 (459)
T ss_pred ccCCCEEEEecCChhhhcccCCHHHHHHHHHHHhcc---CCEEEEECCCHHHHHHHhcC-CceEEeccCCccccccccc-
Confidence 479999999999999999999999999999999964 68999999999887775221 2346776532 11221111
Q ss_pred eEEecCCeEEEEEeecceEEE-EEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEE
Q 011395 285 QVANGGLGVQVVLEKEREMVK-FVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVN 363 (487)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~-~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~ 363 (487)
......+..+.. +. .... .+++++|.||++|+++|++++..+|++++.|.++|++|++++||||++...+++.||+
T Consensus 254 -~~~~~~~~~~~~-~~-~~~~~~~l~l~G~hn~~NalaAia~a~~lgv~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ii~ 330 (459)
T PRK02705 254 -GWILEEGWVVER-GE-PLFPLSALKMPGAHNLQNLLLAVAAARLAGLSAEAIAEALRSFPGVPHRLERIGTINGIDFIN 330 (459)
T ss_pred -eeEecCCEEEEC-Cc-ceeeHHHcCCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEeeCCcEEEE
Confidence 111111222211 11 1112 3578999999999999999999999999999999999999999999988656889999
Q ss_pred ecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc-CC
Q 011395 364 DAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK-TD 442 (487)
Q Consensus 364 Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~-~~ 442 (487)
|||||||+|++++++.+. +++++|+|+|.+.++.+ ++.+.+... ++.+|++|+.+..+.+.+...+ ..
T Consensus 331 Ds~a~N~~s~~~al~~l~-----~~~i~IlGg~~~~~d~~-----~~~~~l~~~-~~~vi~~g~~~~~l~~~l~~~~~~~ 399 (459)
T PRK02705 331 DSKATNYDAAEVGLKAVP-----GPVILIAGGEAKQGDDS-----AWLKQIKAK-AAAVLLFGEAAPTLAQRLQESGYTG 399 (459)
T ss_pred eCCCCCHHHHHHHHHhCC-----CCeEEEecCccCCCCHH-----HHHHHHHhh-eeEEEEECCCHHHHHHHHHhcCCCc
Confidence 999999999999998883 46899999988776553 333455544 8999999999988888776432 12
Q ss_pred eEEEECCHHHHHHHHHhhCCCC--CEEEEe---cC---------CCCcHHHHHHHHH
Q 011395 443 YIVVTNDAEILSQKIVKRLKSN--DVVLVK---GS---------RAMQMEKVVDVIK 485 (487)
Q Consensus 443 ~~~~~~d~~~ai~~l~~~~~~~--d~vLv~---GS---------r~~~~e~~~~~l~ 485 (487)
++..++|.++|++.+.+.+++| |+||+. .| ||..|.+++.+|.
T Consensus 400 ~~~~~~~~~eA~~~a~~~a~~g~~~~vllsp~~as~d~f~~~~~rg~~F~~~v~~~~ 456 (459)
T PRK02705 400 EYEIVETLDEAVPRAFELAKELQAKSVLLSPACASFDQYKNFEERGDHFRQLIQALL 456 (459)
T ss_pred ceEEcCCHHHHHHHHHHHhCCCCCCEEEechhhhhhccccCHHHHHHHHHHHHHHHh
Confidence 3667899999999999988888 789885 23 8889999988774
No 29
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-48 Score=409.86 Aligned_cols=323 Identities=25% Similarity=0.284 Sum_probs=243.9
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++||||||||||||++||+++|+..|.++ .+.|| +|.|+.. .+.++.+++|+|+|+.+ +.. ...++|++
T Consensus 117 ~~vIgITGTnGKTTTt~li~~iL~~~g~~~-~~~Gn----iG~p~~~-~~~~~~~~~VlE~ss~q---l~~-~~~~~P~v 186 (488)
T PRK03369 117 RRWLVVTGTNGKTTTTSMLHAMLIAAGRRS-VLCGN----IGSPVLD-VLDEPAELLAVELSSFQ---LHW-APSLRPEA 186 (488)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCce-EEeCC----CchHHHH-hccCCCCEEEEECChHH---hCc-ccccCCCE
Confidence 379999999999999999999998887654 45676 7888622 23567899999998643 343 35689999
Q ss_pred EEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCC-CCcEEEEeCCC--CceEEEEeceEEe
Q 011395 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPR-GVRKVFFGWRR--GCDVRLVAAQVAN 288 (487)
Q Consensus 212 aViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~-~~~vi~~g~~~--~~d~~~~~~~i~~ 288 (487)
+|||||++||+++|||+|+|+++|++||+ ++.+|+|.||+....+.... ....+.|+... ..++...+..+..
T Consensus 187 aVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (488)
T PRK03369 187 GAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVD 262 (488)
T ss_pred EEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CCEEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEE
Confidence 99999999999999999999999999995 48999999999887665211 12233443222 1133222200000
Q ss_pred cCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 011395 289 GGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (487)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~ 368 (487)
. .+... ......++++++|.||++|+++|++++..+|++++.|+++|++|++++||||++...+++.+|||||||
T Consensus 263 ~----~~~~~-~~~~~~~~l~l~G~hnv~NalaAla~a~~lGi~~e~i~~~L~~f~~~~gR~E~v~~~~gv~iIDDS~Ah 337 (488)
T PRK03369 263 R----AFADD-LRLAPVASIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVVAVADGITYVDDSKAT 337 (488)
T ss_pred e----ccCCc-cceechhhcCCCcHhHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEEEcCCCEEEEECCCCC
Confidence 0 00000 000013578899999999999999999999999999999999999999999999876788999999999
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc-CCeEEEE
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK-TDYIVVT 447 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~-~~~~~~~ 447 (487)
||+|++++++.+ .++++|+|+|.. ++....|.+.+.+. .+.+|++|+....+.+.+.... ...+..+
T Consensus 338 Np~s~~aal~~~------~~iilI~GG~~k-----~~d~~~l~~~l~~~-~~~vi~iG~~~~~i~~~l~~~~~~~~~~~~ 405 (488)
T PRK03369 338 NPHAARASILAY------PRVVWIAGGLLK-----GASVDALVAEMASR-LVGAVLIGRDRAVVAEALSRHAPDVPVVQV 405 (488)
T ss_pred CHHHHHHHHHhC------CCeEEEecCcCC-----CCCHHHHHHHHhhh-eeEEEEEcCCHHHHHHHHHhcCCCCCEEEe
Confidence 999999999865 258999976532 33455677777665 8899999999998888885421 1123333
Q ss_pred C--------------------------------CHHHHHHHHHhhCCCCCEEEEe---cC---------CCCcHHHHHHH
Q 011395 448 N--------------------------------DAEILSQKIVKRLKSNDVVLVK---GS---------RAMQMEKVVDV 483 (487)
Q Consensus 448 ~--------------------------------d~~~ai~~l~~~~~~~d~vLv~---GS---------r~~~~e~~~~~ 483 (487)
. +.++|++.+.+.+++||+||+. .| ||..|.+++..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~vLlSPacaSfd~f~~y~~RG~~F~~~v~~ 485 (488)
T PRK03369 406 VTGEDAGMPATPEVPVACVTDVADDDGETLGDAVMAAAVAAARRLARPGDTVLLAPAGASFDQFTGYGDRGDAFAAAVRA 485 (488)
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHHHhCCCCCEEEeChhhcccccccCHHHHHHHHHHHHHH
Confidence 1 5999999999999999999998 34 88888888877
Q ss_pred HH
Q 011395 484 IK 485 (487)
Q Consensus 484 l~ 485 (487)
+.
T Consensus 486 ~~ 487 (488)
T PRK03369 486 AI 487 (488)
T ss_pred hh
Confidence 64
No 30
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.2e-48 Score=403.59 Aligned_cols=322 Identities=22% Similarity=0.265 Sum_probs=253.0
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++||||||||||||++||+++|+..|.++. ..|| +|.|. ++...+.+++|+|+|+++. .....++|++
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~-~~Gn----iG~p~--l~~~~~~~~~VlE~ss~ql----~~~~~~~P~i 172 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDYP-VAGN----IGVPA--LQAKASKDGYVLELSSFQL----DLVKTFTAKI 172 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeE-EEcc----CCHHH--hcccCCCCEEEEEcCchhh----ccccccCCCE
Confidence 5799999999999999999999988888763 5676 67775 3344557999999997664 2334579999
Q ss_pred EEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC----CCCCcEEEEeCCCCceEEEEeceEE
Q 011395 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVA 287 (487)
Q Consensus 212 aViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~ 287 (487)
+|||||++||+|+|+|+|+|+++|.+||+++++++.+|+|.||+.+..+.. ..+.++++|+.....+. . +.
T Consensus 173 avitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~---~--~~ 247 (454)
T PRK01368 173 AVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILEN---G--IS 247 (454)
T ss_pred EEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCC---C--cE
Confidence 999999999999999999999999999999888999999999998877641 11247889986432111 1 11
Q ss_pred ecCCeEEEEEeec-ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecC
Q 011395 288 NGGLGVQVVLEKE-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAY 366 (487)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsy 366 (487)
.......+.+... .....+.++++|.||++|+++|++++..+|++.+.|+++|++|+++|||||++...+++.+|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~F~~~~~Rle~v~~~~gv~~i~DS~ 327 (454)
T PRK01368 248 VVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSINNISFYNDSK 327 (454)
T ss_pred EECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCcceEEEEEECCeEEEECCC
Confidence 1112222222111 011256678999999999999999999999999999999999999999999998767889999999
Q ss_pred CCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEE
Q 011395 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVV 446 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~ 446 (487)
||||+|++++++.++ ++++|+|.+ +.......+.+.+. . +..+++.|..++.+.+.+... ..+..
T Consensus 328 atN~~a~~~al~~~~------~i~lI~Gg~-----dk~~~~~~L~~~~~-~-v~~v~~~g~~~~~l~~~~~~~--~~~~~ 392 (454)
T PRK01368 328 ATNAISAVQSIKALD------NIYWLAGGI-----PKEGGIEEIKPYFS-K-IKKAYFYGQAKEIFANTAKNI--VDFVI 392 (454)
T ss_pred CCCHHHHHHHHHhcC------CeEEEeccc-----CCCCCHHHHHHHHH-h-hcEEEEECcCHHHHHHHhhcC--CCEEE
Confidence 999999999999882 478999864 22333455666554 2 678888999999998887532 13667
Q ss_pred ECCHHHHHHHHHhhCCCC----CEEEEe---cC---------CCCcHHHHHHHH
Q 011395 447 TNDAEILSQKIVKRLKSN----DVVLVK---GS---------RAMQMEKVVDVI 484 (487)
Q Consensus 447 ~~d~~~ai~~l~~~~~~~----d~vLv~---GS---------r~~~~e~~~~~l 484 (487)
+++.++|++.+.+.+++| |+||+. .| ||..|.++++.+
T Consensus 393 ~~~l~~Av~~a~~~a~~g~~~~d~VLlSPacaSfD~f~~ye~RG~~F~~~v~~~ 446 (454)
T PRK01368 393 CDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLSQKF 446 (454)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHHH
Confidence 889999999999999998 799998 34 888888888776
No 31
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.6e-49 Score=408.82 Aligned_cols=343 Identities=20% Similarity=0.254 Sum_probs=267.7
Q ss_pred CCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 011395 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (487)
Q Consensus 61 g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGT 140 (487)
-++||+.+|.+ ++|+|+++|.+ +|+ | +|. |+..+++.+. ++ +.++||||||
T Consensus 60 ~dlvV~s~gi~-~~~~~l~~A~~-~g~--------------~--vv~-----~~~~~~~~~~-~~-----~~~~I~ITGT 110 (418)
T PRK00683 60 VDLVVRSPGIK-KEHPWVQAAIA-SHI--------------P--VVT-----DIQLAFQTPE-FT-----RYPSLGITGS 110 (418)
T ss_pred CCEEEECCCCC-CCcHHHHHHHH-CCC--------------c--EEE-----HHHHHHhhhh-cC-----CCCEEEEECC
Confidence 58999999999 88999999999 885 2 377 7776665542 22 2578999999
Q ss_pred CChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChh
Q 011395 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDS 220 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~d 220 (487)
||||||++||+++|+..|. +..+.|| +|+|+ +....+.+++|+|+|+++.++... ...+|+++|||||++|
T Consensus 111 ~GKTTTt~ml~~iL~~~g~-~~~~~Gn----iG~p~--l~~~~~~~~~V~E~~s~~~~~~~~--~~~~~~iavitNi~~d 181 (418)
T PRK00683 111 TGKTTTILFLEHLLKRLGI-PAFAMGN----IGIPI--LDGMQQPGVRVVEISSFQLADQEK--SYPVLSGGMILNISDN 181 (418)
T ss_pred CChHHHHHHHHHHHHHcCC-CeEEECC----cCHHH--HHHhhcCCEEEEEechhhhCcCcc--cCCCccEEEEecCChh
Confidence 9999999999999988776 5567888 88886 334446899999999887654333 2345699999999999
Q ss_pred hhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEE--EEeceEEecCCeEEEEEe
Q 011395 221 HLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVR--LVAAQVANGGLGVQVVLE 298 (487)
Q Consensus 221 Hl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~--~~~~~i~~~~~~~~~~~~ 298 (487)
|+++|+|+|+|+++|.+|+..+. |.|+.... ...+|+.+ +. ... + +...
T Consensus 182 Hld~~~s~e~y~~aK~~i~~~~~-------~~~~~~~~--------~~~~~~~~----~~~~~~~--~--------~~~~ 232 (418)
T PRK00683 182 HLDYHGNLSAYFQAKQNIAKCLR-------NPDDLWVG--------DERSYGHS----YLEYVQE--I--------MRLL 232 (418)
T ss_pred HhccCCCHHHHHHHHHHHHHhhh-------Cccccccc--------ccCCcCce----eecCcch--h--------hhhh
Confidence 99999999999999999997543 22322110 11233321 10 000 1 0000
Q ss_pred ecceEEEEEeCCCchhhHHHHHHHHHHHHH-cCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHH
Q 011395 299 KEREMVKFVIPSPGLHLAINACAAAAVATL-FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAI 377 (487)
Q Consensus 299 ~~~~~~~~~l~l~G~~nv~NalaAia~a~~-lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l 377 (487)
.. ...++++|.||++|+++|++++.. +|++.++|+++|++|++++||||++...++..+|||+||+||+|+++++
T Consensus 233 ~~----~~~~~~~g~hn~~Na~aA~a~~~~l~g~~~~~i~~~l~~~~~~~~R~e~v~~~~g~~~i~Ds~~t~~~s~~~al 308 (418)
T PRK00683 233 DK----GSALKPLYLHDRYNYCAAYALANEVFPISEESFLEAVATFEKPPHRMEYLGEKDGVHYINDSKATTVSAVEKAL 308 (418)
T ss_pred cc----ccccCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCCCceEEEeecCCeEEEEcCCCCCHHHHHHHH
Confidence 01 124578899999999999999999 6999999999999999999999999865789999999999999999999
Q ss_pred HHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHH
Q 011395 378 DLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKI 457 (487)
Q Consensus 378 ~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l 457 (487)
+.+ .+|+++|+|+|.+.++.+ ++++.+.+. +|.|+++|++...+.+.+... .++.+++|+++|++.+
T Consensus 309 ~~~-----~~~~i~vlG~~~~~~d~~-----~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~~--~~~~~~~~~~~a~~~~ 375 (418)
T PRK00683 309 LAV-----GNQVIVILGGRNKGCDFS-----SLLPVLRQT-AKHVVAMGECRQEIAQALSEK--FPLTVVKDLQEAVSCA 375 (418)
T ss_pred HhC-----CCCEEEEEcCCCCCCCHH-----HHHHHHHHh-CCEEEEECCCHHHHHHHHhcC--CCEEEeCCHHHHHHHH
Confidence 864 257899999987766543 678887776 899999999988888877543 1356789999999999
Q ss_pred HhhCCCCCEEEEe---cC---------CCCcHHHHHHHHHhC
Q 011395 458 VKRLKSNDVVLVK---GS---------RAMQMEKVVDVIKAM 487 (487)
Q Consensus 458 ~~~~~~~d~vLv~---GS---------r~~~~e~~~~~l~~~ 487 (487)
.+.+++||+||+. +| ||..|.+++..++++
T Consensus 376 ~~~~~~gd~VLlsp~~~s~d~f~~~~~RG~~F~~~v~~~~~~ 417 (418)
T PRK00683 376 QEIAQPGDVILLSPGCASFDQFRSFEERGAMFKQLVGMMEAL 417 (418)
T ss_pred HHhCCCCCEEEECchhcccccccCHHHHHHHHHHHHHHHhhh
Confidence 9999999999977 44 888999999888754
No 32
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.7e-48 Score=409.85 Aligned_cols=330 Identities=24% Similarity=0.305 Sum_probs=252.6
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHh-hcCCCCCcEEEEeccCCCcchHHhhcccc
Q 011395 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL-IGIDRAVDIAVLEMGMSGKGEILELARMA 207 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l-~~~~~~~~~~V~E~g~~~~g~i~~~~~~~ 207 (487)
..+.++||||||||||||++||+++|+..|.++. +.|| +|.|++. +....+.+++|+|+|+++. . ..+.+
T Consensus 119 ~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~-~~Gn----ig~~~~~~~~~~~~~~~~V~E~ss~~l---~-~~~~i 189 (480)
T PRK01438 119 DRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAA-AVGN----IGTPVLDAVRDPEGYDVLAVELSSFQL---H-WSPSV 189 (480)
T ss_pred cCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeE-EECC----ccHHHHHHHhcCCCCCEEEEEcChHHh---C-cCccc
Confidence 3457899999999999999999999988887764 5676 7888753 4445678999999997643 2 23467
Q ss_pred CCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCC----CCCcEEEEeCCC--CceEEE
Q 011395 208 RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVP----RGVRKVFFGWRR--GCDVRL 281 (487)
Q Consensus 208 ~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~----~~~~vi~~g~~~--~~d~~~ 281 (487)
+|+++|||||++||+++|||+|+|+++|++|++. ..+.+|+|.||+....+..+ .++++++|+.+. ..++.+
T Consensus 190 ~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (480)
T PRK01438 190 SPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGV 267 (480)
T ss_pred CCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceEEEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceE
Confidence 9999999999999999999999999999999985 24789999999988776521 236788888642 223332
Q ss_pred EeceEEecCCeEEEEEeec-c--eEE-EEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecC
Q 011395 282 VAAQVANGGLGVQVVLEKE-R--EMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRS 357 (487)
Q Consensus 282 ~~~~i~~~~~~~~~~~~~~-~--~~~-~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~ 357 (487)
.+. +... ..|..... . ... ..+++++|.||++|+++|++++..+|++.+.|+++|++|++++||||++...+
T Consensus 268 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~~~~ 343 (480)
T PRK01438 268 VDG-ILVD---RAFVEDRQTSALELATLEDLRPAAPHNIANALAAAALARSFGVPPAAVRDGLRAFRPDAHRIEHVADAD 343 (480)
T ss_pred ECC-EEEE---EeeccccccccceeeeHHHcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEEC
Confidence 210 0000 01111110 0 000 12478999999999999999999999999999999999999999999998656
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhh
Q 011395 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMN 437 (487)
Q Consensus 358 ~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~ 437 (487)
++.+|||||||||+|++++|+.+ +++++|+|+|.. ++....+.+.+... ++++|++|.....+.+.++
T Consensus 344 ~~~iiDDs~ahNp~a~~aaL~~l------~~i~~I~gG~~~-----~kd~~~~~~~l~~~-~~~vi~~g~~~~~~~~~l~ 411 (480)
T PRK01438 344 GVTWVDDSKATNPHAAAASLAAY------PSVVWIAGGLAK-----GADFDDLVRRAAGR-LRGVVLIGADRAEIAEALA 411 (480)
T ss_pred CEEEEecCccCCHHHHHHHHHhC------CCEEEEEecccC-----CCCHHHHHHHHHhh-ceEEEEECCCHHHHHHHHH
Confidence 78899999999999999999887 268899975432 33445566666665 7999999999888887776
Q ss_pred hhc-CCeEEEEC-----CHHHHHHHHHhhCCCCCEEEEecC------------CCCcHHHHHHHHH
Q 011395 438 LIK-TDYIVVTN-----DAEILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVVDVIK 485 (487)
Q Consensus 438 ~~~-~~~~~~~~-----d~~~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~~~l~ 485 (487)
... ...+..++ +.++|++.+.+.+.++|+||+.-. ||..|.+++..|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~~~d~vllsp~~as~d~f~~~~~Rg~~F~~~v~~~~ 477 (480)
T PRK01438 412 RHAPDVPVVEVDRTDTGAMDEAVAAAAKLARPGDTVLLAPAAASMDMFTDYAARGDAFAAAVRALL 477 (480)
T ss_pred hcCCCCCEEEecCCCcCCHHHHHHHHHHhCCCCCEEEechhhhccccccCHHHHHHHHHHHHHHhh
Confidence 532 11344455 999999999999999999999832 8888999888764
No 33
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.3e-46 Score=392.08 Aligned_cols=322 Identities=25% Similarity=0.308 Sum_probs=246.9
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhH-hhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALS-LIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~-l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++||||||||||||++||+++|+..|.++ ...|| +|.|+. .+....+.+++|+|+|+++.+.+... .++|+
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~-~~~Gn----iG~p~~~~~~~~~~~~~~VlE~ss~q~~~~~~~--~~~P~ 187 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRT-ALVGN----IGVPLLEVLAPQPAPEYWAIELSSYQTGDVARS--GARPE 187 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcE-EEcCC----CCcchHHHhccCCCCcEEEEEecCCcccccccc--cCCCC
Confidence 479999999999999999999998888655 46777 677773 44444568999999999877655432 37999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecC
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGG 290 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~ 290 (487)
++|||||++||+++|||+|+|.++|.+|++..++ +.+|+|.||+....+.. ...++++|+.... +....
T Consensus 188 iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~-~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~--~~~~~------- 256 (468)
T PRK04690 188 LAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP-RIALLNAADPRLAALQL-PDSEVVWFNHPDG--WHVRG------- 256 (468)
T ss_pred EEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-CeEEEeCccHHHHHHhc-CCCeEEEeeCCcc--ceecc-------
Confidence 9999999999999999999999999999987654 68899999998766542 2257888875421 11100
Q ss_pred CeEEEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 011395 291 LGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (487)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~n 369 (487)
. +.+.+.. .+..+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...+++.+||||||||
T Consensus 257 -~--~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~lgi~~~~i~~~l~~~~~~~gR~e~~~~~~g~~iidDs~ahN 333 (468)
T PRK04690 257 -D--VVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEALGLDAVALAPAAAGFRPLPNRLQELGSRDGITYVNDSISTT 333 (468)
T ss_pred -e--EEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEEccCCeEEEEeCCCCC
Confidence 0 1111110 11145778999999999999999999999999999999999998999999998756889999999999
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc---CCeEEE
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK---TDYIVV 446 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~---~~~~~~ 446 (487)
|+|++++++.+. .+++++|+|.+ ..++....|.+.+.....+.++++|+....+.+.+.... ...+..
T Consensus 334 p~a~~~al~~~~----~~~i~~i~Gg~-----~k~kd~~~l~~~l~~~~~~~v~~~g~~~~r~~~~l~~~~~~~~~~~~~ 404 (468)
T PRK04690 334 PHASLAALDCFA----GRRVALLVGGH-----DRGLDWTDFAAHMAQRAPLEIVTMGANGPRIHALLAPLAAAGRFGLHA 404 (468)
T ss_pred HHHHHHHHHhcc----CCcEEEEEcCC-----CCCCCHHHHHHHHHhccCeEEEEeCCCHHHHHHHHHhcccccCCceEE
Confidence 999999987752 35788888753 233355778888876423788888988766666664321 123566
Q ss_pred ECCHHHHHHHHHh-hCCCCCEEEEe---cC---------CCCcHHHHHHH
Q 011395 447 TNDAEILSQKIVK-RLKSNDVVLVK---GS---------RAMQMEKVVDV 483 (487)
Q Consensus 447 ~~d~~~ai~~l~~-~~~~~d~vLv~---GS---------r~~~~e~~~~~ 483 (487)
+++.++|++.+.+ ..++||+||+. .| ||..|.+++..
T Consensus 405 ~~~~~~Av~~A~~~~~~~gdvVLlSPa~aSfD~f~~y~~RG~~F~~~~~~ 454 (468)
T PRK04690 405 ADDLAHAVRLARTALGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQLAGF 454 (468)
T ss_pred cCCHHHHHHHHHHHhCCCCCEEEeCccccccccccCHHHHHHHHHHHhcc
Confidence 8899999999987 77899999998 23 66666666543
No 34
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=5.3e-47 Score=420.73 Aligned_cols=358 Identities=23% Similarity=0.242 Sum_probs=268.4
Q ss_pred HHHHHHHHHH-HH-hhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCCCCCCcchh-------hhHh--hc
Q 011395 114 TLNSLVNMAC-YA-RNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGV-------ALSL--IG 180 (487)
Q Consensus 114 ~~~aL~~la~-~~-~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g~~n~~~g~-------p~~l--~~ 180 (487)
.+.++..+.. ++ ..|..++|+|+||||||||||++||+++|+..|++++ .|.|.+++...+ |.+. +.
T Consensus 459 ~r~v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l 538 (864)
T TIGR02068 459 PRNVARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRIL 538 (864)
T ss_pred CeeHHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHh
Confidence 4556666665 44 4567789999999999999999999999999999885 345555433221 3322 23
Q ss_pred CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcC--CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHH
Q 011395 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL--GSLEDVARAKGEIFQESKLGDVCVLNADDPLVA 258 (487)
Q Consensus 181 ~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~--gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~ 258 (487)
.++++|++|+|+|+++. ++......+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|+|||.+.
T Consensus 539 ~~~~vd~aVlE~~~ggi--l~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~ 616 (864)
T TIGR02068 539 MDPTVDAAVLETARGGI--LREGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVA 616 (864)
T ss_pred hCCCCCEEEEEccCCch--hhccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 56789999999976443 33333445899999999999999865 699999999999999889999999999999988
Q ss_pred hhcCCCCCcEEEEeCCCCceEEEEe----c-eEEecCCeEEEEEeecce-----EEEEEeCCCc--hhhHHHHHHHHHHH
Q 011395 259 NLTVPRGVRKVFFGWRRGCDVRLVA----A-QVANGGLGVQVVLEKERE-----MVKFVIPSPG--LHLAINACAAAAVA 326 (487)
Q Consensus 259 ~~~~~~~~~vi~~g~~~~~d~~~~~----~-~i~~~~~~~~~~~~~~~~-----~~~~~l~l~G--~~nv~NalaAia~a 326 (487)
.+.....+++++|+.+...++...+ + .+... .+..+...+... ...+.+++.| .||++|+++|++++
T Consensus 617 ~~a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa 695 (864)
T TIGR02068 617 AMAEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYE-NGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAVAAA 695 (864)
T ss_pred HHHHhCCCCEEEEecCCCChHHHHHHHcCCcEEEEc-CCEEEEEecCccccccceeeeccccCCcccchHHHHHHHHHHH
Confidence 7763223678999865432211100 0 01111 111122221100 1134444445 89999999999999
Q ss_pred HHcCCCHHHHHHHhcCCCC----CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcc
Q 011395 327 TLFGVSLAQVGISLSNFSP----VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGST 402 (487)
Q Consensus 327 ~~lg~~~~~i~~~L~~~~~----~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~ 402 (487)
+.+|++++.|+++|++|.+ +|||||+++. +++.+|+| |||||+|+++++++++++. .+|+++|+|+| |++
T Consensus 696 ~~lgi~~e~I~~gL~~F~~~~~~~pGR~e~~~~-~g~~vI~D-yAHNP~a~~all~~l~~~~-~~r~i~Vig~~---gdr 769 (864)
T TIGR02068 696 WALGVPIELIRAGIRTFDADAAQAPGRFNLFNL-GGAHVLVD-YGHNPAAIEAVGAAIRNWP-ARRRIGVIGGP---GDR 769 (864)
T ss_pred HHcCCCHHHHHHHHHhccccccCCCCceEEEEe-CCcEEEEE-cCCCHHHHHHHHHHHHhcC-CCCEEEEECCC---CCC
Confidence 9999999999999999987 8999999976 68899999 9999999999999998875 56889999985 788
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEECcc----------HHHHHHHhhhhc-CCeEEEECCHHHHHHHHHhhCCCCCEEEEec
Q 011395 403 ERESHEKILSYCCDACIDLIGLVGDR----------FRAAAENMNLIK-TDYIVVTNDAEILSQKIVKRLKSNDVVLVKG 471 (487)
Q Consensus 403 ~~~~~~~~~~~l~~~~~d~vi~~g~~----------~~~i~~~~~~~~-~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~G 471 (487)
+++.+.++++.+.+. +|.||++.++ +..+.+.+.+.+ ...+..++|+++|++.+.+.+++||+||+.+
T Consensus 770 ~~~~~~~lg~~l~~~-~d~vil~~~~~~rg~~~ge~~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a~~gDlVLi~~ 848 (864)
T TIGR02068 770 RDEDLVEQGELLGGA-FDQIILKEDDDVRGRPRGEAAALLRQGLRQSARKAAIEDILDETEAIAAALDDLRAGDLVVIFP 848 (864)
T ss_pred ChhHHHHHHHHHHHh-CCEEEEEeCCCcCCCCCchHHHHHHHHHHhcCCCCcEEEEcCHHHHHHHHHHhCCCCCEEEEEe
Confidence 889999999999876 8999997543 344555554432 2346778999999999999999999999999
Q ss_pred CCCCcHHHHH
Q 011395 472 SRAMQMEKVV 481 (487)
Q Consensus 472 Sr~~~~e~~~ 481 (487)
..-....+++
T Consensus 849 ~~~~~~~~~~ 858 (864)
T TIGR02068 849 ESVERAIKLI 858 (864)
T ss_pred cchHHHHHHH
Confidence 8644444433
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=7.8e-47 Score=389.14 Aligned_cols=327 Identities=22% Similarity=0.246 Sum_probs=239.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCC--CCCCcc---hh-----------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRV---GV----------- 174 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g--~~n~~~---g~----------- 174 (487)
.+++.|..|+ .|+.++++|+||||||||||+.||+++|++.|++|+ +|++ ++|.++ |.
T Consensus 3 r~~~~l~~lg----~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 78 (397)
T TIGR01499 3 RMKKLLEALG----NPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAF 78 (397)
T ss_pred HHHHHHHHcC----CcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHH
Confidence 3455555555 455568999999999999999999999999999994 4443 344443 21
Q ss_pred ------------hhHhhc----------CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-CHHHH
Q 011395 175 ------------ALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDV 231 (487)
Q Consensus 175 ------------p~~l~~----------~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g-s~e~~ 231 (487)
+.+.++ .+.++|++|||+|+++.. +.+++++|+++|||||+.||+++|| |+|+|
T Consensus 79 ~~v~~~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrl---d~tn~i~p~vaViTnI~~DHl~~lG~t~e~i 155 (397)
T TIGR01499 79 EQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRL---DATNVIEPLVSVITSIGLDHTEILGDTLEEI 155 (397)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCc---ccccccCCCeEEEccccHHHHHHhCccHHHH
Confidence 111111 257999999999987663 3577889999999999999999999 89999
Q ss_pred HHHHHhhcccCCCCCeEEEcCCcHHHHhhc----CCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeec-ceEEEE
Q 011395 232 ARAKGEIFQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE-REMVKF 306 (487)
Q Consensus 232 ~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 306 (487)
+++|++|++ +++.+|+|.||+....++ ...++++++++. ++.... . .+..|.+.+. +....+
T Consensus 156 a~~Ka~I~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~--~----~~~~~~~~~~~~~~~~~ 222 (397)
T TIGR01499 156 AWEKAGIIK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGR----DFNYSE--T----DENYLSFSGANLFLEPL 222 (397)
T ss_pred HHHHhCccC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEecc----ceeecc--c----ccceEEeeccccccccc
Confidence 999999996 467899999998776543 112356677763 232211 1 1123444332 111146
Q ss_pred EeCCCchhhHHHHHHHHHHHHHcCC-----CHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHH
Q 011395 307 VIPSPGLHLAINACAAAAVATLFGV-----SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381 (487)
Q Consensus 307 ~l~l~G~~nv~NalaAia~a~~lg~-----~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~ 381 (487)
.++++|.||++|+++|++++..+|. +.+.|+++|+++. +|||||++.. +++.+|+| +||||+|+++++++++
T Consensus 223 ~~~l~G~~~~~N~~~Aiaa~~~lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~~-~~~~viiD-~AHNp~a~~~~l~~l~ 299 (397)
T TIGR01499 223 ALSLLGDHQAENAALALAALEVLGKQRPKLSEEAIRKGLANTI-WPGRLEILSE-DNPNILLD-GAHNPHSAEALAEWFK 299 (397)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhCC-CCceEEEEec-CCCEEEEE-CCCCHHHHHHHHHHHH
Confidence 7899999999999999999999986 5899999999997 6999999986 46788899 8999999999999998
Q ss_pred ccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCE-EEE-ECc-----cHHHHHHHhhhhcCCeEEEECCHHHHH
Q 011395 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDL-IGL-VGD-----RFRAAAENMNLIKTDYIVVTNDAEILS 454 (487)
Q Consensus 382 ~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~-vi~-~g~-----~~~~i~~~~~~~~~~~~~~~~d~~~ai 454 (487)
...+.+++++|+|++ +++ .+.++.+.+... ++. +++ +.+ ++.++.+.+... .+..++|+++|+
T Consensus 300 ~~~~~~~i~~V~G~~---~dk---d~~~~~~~l~~~-~~~d~~~~~~~~~r~~~~~~i~~~~~~~---~~~~~~~~~~ai 369 (397)
T TIGR01499 300 KRFNGRPIILLFGAL---ADK---DAAAMLAPLKPV-VDKEVFVTPFDYPRADDAADLAALAETF---GKETVEDWREAL 369 (397)
T ss_pred HhcCCCCeEEEEEee---CCC---CHHHHHHHHhhc-cCcEEEEECCCCCCCCCHHHHHHHHHHc---CceecCCHHHHH
Confidence 755334678999973 333 334445554443 333 544 433 356677776533 245689999999
Q ss_pred HHHHhhCCCCCEEEEecCC
Q 011395 455 QKIVKRLKSNDVVLVKGSR 473 (487)
Q Consensus 455 ~~l~~~~~~~d~vLv~GSr 473 (487)
+.+. .++++|+|||.||.
T Consensus 370 ~~a~-~~~~~d~vlv~GSl 387 (397)
T TIGR01499 370 ALAL-NASAEDDILVTGSL 387 (397)
T ss_pred HHHH-hCCCCCEEEEEccH
Confidence 9988 77889999999995
No 36
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.2e-44 Score=364.27 Aligned_cols=300 Identities=24% Similarity=0.262 Sum_probs=232.6
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEI 211 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdv 211 (487)
.++||||||||||||++||+++|+..|..+ .|| +|.|++. +..+.+++|+|+|+.+ ..+++.++|++
T Consensus 89 ~~~i~ITGT~GKTTTt~ml~~iL~~~g~~~---~gn----iG~p~~~--~~~~~~~~V~E~ss~~----~~~~~~~~p~i 155 (401)
T PRK03815 89 PFSIWISGTNGKTTTTQMTTHLLEDFGAVS---GGN----IGTPLAE--LDKNAKIWVLETSSFT----LHYTNKAKPNI 155 (401)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHCCCcE---EEE----ecHhHHh--cCCCCCEEEEECChHH----hhCCccCCCcE
Confidence 359999999999999999999998777332 345 7888876 4567799999996432 34567789999
Q ss_pred EEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCC
Q 011395 212 RVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGL 291 (487)
Q Consensus 212 aViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~ 291 (487)
+|||||++||+++|+|+|+|+++|.+|++++++++.+|+|.||+... .+ .++++||... +++. .
T Consensus 156 avitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n~dd~~~~---~~--~~~~~fg~~~--~~~~-~-------- 219 (401)
T PRK03815 156 YLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILPKKFKNTP---TK--AQKIFYEDEE--DLAE-K-------- 219 (401)
T ss_pred EEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEeccccccc---cC--CcEEEEecCC--cccc-c--------
Confidence 99999999999999999999999999999999999999999998632 11 5678888421 2210 1
Q ss_pred eEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHH
Q 011395 292 GVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPI 371 (487)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~ 371 (487)
+.+... .+.+.+. |++|+++|++++..+|+ +.+.++|++|+++++|||++...+++++||||||+||+
T Consensus 220 ---~~~~~~------~~~~~~~-~~~NalaA~a~a~~~G~--~~~~~~L~~f~~~~~R~e~~~~~~gv~~idDs~~tn~~ 287 (401)
T PRK03815 220 ---FGIDSE------KINFKGP-FLLDALLALAVYKILFD--ELDYERLNAFKIGKHKLEEFRDKQGRLWVDDSKATNVD 287 (401)
T ss_pred ---eeEehH------hcCCchH-HHHHHHHHHHHHHHhCc--HHHHHHHHhCCCCCceEEEEEEECCEEEEECCCCCCHH
Confidence 111111 1123344 49999999999999994 55667899999999999999766899999999999999
Q ss_pred HHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHH
Q 011395 372 STRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAE 451 (487)
Q Consensus 372 s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~ 451 (487)
|+.++|+.+ . .+|+++|+| |......+.++++.+..... .|+++|+....+.+.+...+ ..+..+++.+
T Consensus 288 a~~~al~~~---~-~~~ii~IlG-----G~~k~~~~~~l~~~~~~~~~-~v~~~G~~~~~~~~~~~~~~-~~~~~~~~~e 356 (401)
T PRK03815 288 ATLQALKRY---K-DKKIHLILG-----GDDKGVDLTPLFEFMKNLNI-ELYAIGSNTEKIQALAKEFN-IKAFVCEFLE 356 (401)
T ss_pred HHHHHHHhC---C-CCCEEEEEC-----CCCCCCCHHHHHHHHHhhCc-EEEEECCCHHHHHHHHhcCC-CeEEEeCCHH
Confidence 988888765 2 346799998 44434455589998887644 59999998877776654322 2355678999
Q ss_pred HHHHHHHhhCCCCCEEEEecC------------CCCcHHHHHHH
Q 011395 452 ILSQKIVKRLKSNDVVLVKGS------------RAMQMEKVVDV 483 (487)
Q Consensus 452 ~ai~~l~~~~~~~d~vLv~GS------------r~~~~e~~~~~ 483 (487)
++++.+.+.+++||+||+.+. ||..|.++++.
T Consensus 357 ~av~~~~~~~~~gdvVLlSPa~aSfd~f~ny~~RG~~F~~~v~~ 400 (401)
T PRK03815 357 KAVEEIKKVLKQNEVALLSPAAASLDQFKSYKERGEKFKAFVLK 400 (401)
T ss_pred HHHHHHHHhCCCCCEEEeChhhhccccccCHHHHHHHHHHHHHh
Confidence 999999988999999999943 77777777764
No 37
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=5.6e-43 Score=367.91 Aligned_cols=342 Identities=22% Similarity=0.211 Sum_probs=238.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEec--CC--CCCCcch-----h---------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS--YG--NWNNRVG-----V--------- 174 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t--~g--~~n~~~g-----~--------- 174 (487)
.+++.|..|+ +|..++++|+|||||||+||+.||+++|+++|++|+.. +. .+|.++- .
T Consensus 60 r~~~ll~~LG----~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~ 135 (510)
T PLN02913 60 RMRRLMDRLG----NPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLND 135 (510)
T ss_pred HHHHHHHHcC----CchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHH
Confidence 4555555555 45555799999999999999999999999999999642 21 2332221 1
Q ss_pred ------------------hhHhhc----------CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC
Q 011395 175 ------------------ALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG 226 (487)
Q Consensus 175 ------------------p~~l~~----------~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g 226 (487)
++|.|+ .+.++|++|+|+|+++.++...+....+|+++|||||+.||++++|
T Consensus 136 ~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG 215 (510)
T PLN02913 136 LFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALG 215 (510)
T ss_pred HHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhc
Confidence 222222 1578999999999999866555443334699999999999999998
Q ss_pred -CHHHHHHHHHhhcccCCCCCeEEEcC-CcHHHHhhc----CCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEee-
Q 011395 227 -SLEDVARAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEK- 299 (487)
Q Consensus 227 -s~e~~~~aK~~i~~~~~~~~~~vln~-Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~- 299 (487)
|+|+|+++|++|++ ++..+|++. ..+....++ .+.+++++.++. ...++.... +... .+..|.+..
T Consensus 216 ~Tle~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~-~~~~~~~~~--~~~~-~~~~~~~~~~ 288 (510)
T PLN02913 216 GSLESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASD-PGVRSSIKG--IITD-NGKPCQSCDI 288 (510)
T ss_pred ccHHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEecc-ccccceeec--cccc-CCceeEEecc
Confidence 79999999999996 578888885 334443332 222467777642 111222211 1111 111233211
Q ss_pred ----cc------eEEEEEeCCCchhhHHHHHHHHHHHHHc-----CCCHHHHHHHhcCCCCCCCceeEEeec-------C
Q 011395 300 ----ER------EMVKFVIPSPGLHLAINACAAAAVATLF-----GVSLAQVGISLSNFSPVQMRSELLVSR-------S 357 (487)
Q Consensus 300 ----~~------~~~~~~l~l~G~~nv~NalaAia~a~~l-----g~~~~~i~~~L~~~~~~~gR~e~~~~~-------~ 357 (487)
.+ ....+.++++|.||++|+++|++++..+ +++.+.|+++|+++++ |||||++... .
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~ 367 (510)
T PLN02913 289 VIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLP 367 (510)
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCC
Confidence 00 1114778999999999999999999988 6999999999999996 6999998631 2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHH-cCCCEEEEECcc--------
Q 011395 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCD-ACIDLIGLVGDR-------- 428 (487)
Q Consensus 358 ~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~-~~~d~vi~~g~~-------- 428 (487)
++.||+| ++|||+||+++++++++..+.+|+++|+|.+ .++.|.+|++.+.. ..+|.++++...
T Consensus 368 ~~~vIlD-gAHNp~s~~al~~~L~~~~~~~ki~~V~gml------~DKd~~~~l~~l~~~~~~d~v~~~~~~~~~~~~r~ 440 (510)
T PLN02913 368 GATVLLD-GAHTKESAKALVDTIKTAFPEARLALVVAMA------SDKDHLAFASEFLSGLKPEAVFLTEADIAGGKSRS 440 (510)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHHHHhcCCCCEEEEEEcc------CCCCHHHHHHHHhcccCCCEEEEEcCCCCCCCCCC
Confidence 5689999 7799999999999998733245666777653 45678888886644 237999887432
Q ss_pred --HHHHHHHhhhhcC-CeEE--------EECCHHHHHHHHHhhC--CCCCEEEEecCC
Q 011395 429 --FRAAAENMNLIKT-DYIV--------VTNDAEILSQKIVKRL--KSNDVVLVKGSR 473 (487)
Q Consensus 429 --~~~i~~~~~~~~~-~~~~--------~~~d~~~ai~~l~~~~--~~~d~vLv~GSr 473 (487)
+..+.+.++.... ..+. .+++.++|++.+.+.. .++|.|||+||-
T Consensus 441 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~v~GSl 498 (510)
T PLN02913 441 TSASALKEAWIKAAPELGIETLLAENNSLLKSLVDASAILRKARTLDPSSVVCVTGSL 498 (510)
T ss_pred CCHHHHHHHHHHhccccCceeeccccccccCCHHHHHHHHHHhcccCCCCEEEEeCcH
Confidence 3446665543211 1222 2789999999988776 467999999994
No 38
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=6e-42 Score=381.12 Aligned_cols=315 Identities=21% Similarity=0.259 Sum_probs=228.4
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCce-EecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++||||||||||||++||+++|+..|+++ ....|| + |.|. .....+.|++|+|+|++. +.+. .++|+
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~-~---g~~~--~~~~~~~d~~V~E~ss~~-~~~~----~~~P~ 172 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGL-N---QEGL--NGYSGSSEYFVAEADESD-GSLK----HYTPE 172 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCc-c---cccc--ccccCCCCEEEEECCCCc-chhh----eeecC
Confidence 379999999999999999999999888763 434343 2 3332 233445799999999874 4443 47999
Q ss_pred EEEEcCCChhhhhcC-CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEec
Q 011395 211 IRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANG 289 (487)
Q Consensus 211 vaViTNI~~dHl~~~-gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~ 289 (487)
++|||||++||+|+| +|+|+|+++|..+++.+++++.+|+|.||+...... +.++|+++..+++.+.. +...
T Consensus 173 iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~--~~~~ 245 (809)
T PRK14573 173 FSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILS--YYQE 245 (809)
T ss_pred EEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEE--EEec
Confidence 999999999999988 899999999999998888889999999999765532 23567765445665544 5444
Q ss_pred CCeEEEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC
Q 011395 290 GLGVQVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA 368 (487)
Q Consensus 290 ~~~~~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~ 368 (487)
.....|.+...+ ....+.++++|.||++|+++|++++..+|++.+.|+++|++|++++||||++...+++.+|+| |||
T Consensus 246 ~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~~~~~~~~i~D-~ah 324 (809)
T PRK14573 246 GWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGFSGVQRRLERKNSSETFLFLED-YAH 324 (809)
T ss_pred CCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEeccCCcEEEEE-CCC
Confidence 444556654322 223678899999999999999999999999999999999999999999999986567899999 999
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc--HHHHHHHHHHHHHcCCCEEEEECcc-----------HHHHHHH
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE--RESHEKILSYCCDACIDLIGLVGDR-----------FRAAAEN 435 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~--~~~~~~~~~~l~~~~~d~vi~~g~~-----------~~~i~~~ 435 (487)
||+|++++++++++..+.+|+++||++ .+++ .....++...+.. +|.++++..+ +..+.+.
T Consensus 325 nP~~~~a~l~~l~~~~~~~rli~vf~~----~~~~~~~~~~~~~~~~l~~--~d~vilt~~~~~~e~~~~~~~~~~L~~~ 398 (809)
T PRK14573 325 HPSEISCTLRAVRDAVGLRRIIAICQP----HRFSRLRECLDSFPSAFQD--ADEVILTDVYSAGEEPEDSISYQKLAEA 398 (809)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEEEEcC----CcchhHHHHHHHHHHHHHH--CCEEEECCccCCCCCCCCCCCHHHHHHH
Confidence 999999999999886535678899963 2222 2223344444543 7999986332 3456666
Q ss_pred hhhhcCCeEEEECCHHHHHHHHHhhCCCCCE--EEEecC
Q 011395 436 MNLIKTDYIVVTNDAEILSQKIVKRLKSNDV--VLVKGS 472 (487)
Q Consensus 436 ~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~--vLv~GS 472 (487)
+........ .+...++..+.+...++++|+ +++.||
T Consensus 399 ~~~~~~~~~-~~~~~~~~~~al~~~~~~~d~~~il~~GS 436 (809)
T PRK14573 399 ISQSSIVKC-TYVPFHEIQRYLEQSIRVHDVCVSLGAGN 436 (809)
T ss_pred HhhcCCCce-eecCHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 642211111 122344444444444555687 455566
No 39
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=8.2e-43 Score=360.69 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=225.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCC----CCCCcc---h--h---------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYG----NWNNRV---G--V--------- 174 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g----~~n~~~---g--~--------- 174 (487)
.+++.|..|+ +|+...++|+||||||||||+.||+++|++.|++|+.... +++.++ | +
T Consensus 34 ~~~~ll~~lg----~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 109 (416)
T PRK10846 34 RVSQVAARLD----LLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASF 109 (416)
T ss_pred HHHHHHHHhC----CCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHH
Confidence 4555555555 4566679999999999999999999999999999963221 122211 0 0
Q ss_pred ----------hhHhhc----------CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-CHHHHHH
Q 011395 175 ----------ALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVAR 233 (487)
Q Consensus 175 ----------p~~l~~----------~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g-s~e~~~~ 233 (487)
+++.++ .+.++|++|+|+|+++. .+.++.++|+++|||||++||+++|| |+|+|++
T Consensus 110 ~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggr---ld~tn~i~p~vaviTnI~~DHld~lG~t~e~ia~ 186 (416)
T PRK10846 110 AEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR---LDATNIVDADVAVVTSIALDHTDWLGPDRESIGR 186 (416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCC---chhhhccCCCEEEECCccHHHHHHhcCCHHHHHH
Confidence 112111 25789999999998654 33466789999999999999999999 6999999
Q ss_pred HHHhhcccCCCCCeEEEcCCc-HH-HHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCC
Q 011395 234 AKGEIFQESKLGDVCVLNADD-PL-VANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (487)
Q Consensus 234 aK~~i~~~~~~~~~~vln~Dd-~~-~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 311 (487)
+|++|++. ++.+|+|.|| +. ...+..+.+++++.++. ++.. .....+ +.+...... ...++++
T Consensus 187 ~Ka~Iik~---~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~----~~~~-----~~~~~~--~~~~~~~~~-~~~~~l~ 251 (416)
T PRK10846 187 EKAGIFRA---EKPAVVGEPDMPSTIADVAQEKGALLQRRGV----DWNY-----SVTDHD--WAFSDGDGT-LENLPLP 251 (416)
T ss_pred HHHhhhcC---CCeEEECCccHhHHHHHHHHHhCCcEEEecc----eeee-----eccCce--EEEecCccc-cccCCcc
Confidence 99999964 6788998876 43 22333222355554432 1111 000111 112111010 1235555
Q ss_pred chhhHHHHHHHHHHHHH--cCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcE
Q 011395 312 GLHLAINACAAAAVATL--FGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR 389 (487)
Q Consensus 312 G~~nv~NalaAia~a~~--lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~ 389 (487)
.||++|+++|++++.. ++++.+.|+++|++++ +|||||++.. +..+|+| |||||+|++++++.++++.+.+|+
T Consensus 252 -~~~~~N~~~Aia~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~--~~~iI~D-~AHNp~a~~~l~~~L~~~~~~~~i 326 (416)
T PRK10846 252 -NVPLPNAATALAALRASGLEVSEQAIRDGIASAI-LPGRFQIVSE--SPRVILD-VAHNPHAAEYLTGRLKALPKNGRV 326 (416)
T ss_pred -chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEcC--CCcEEEE-CCCCHHHHHHHHHHHHHhcCCCCE
Confidence 4799999999999865 5699999999999999 6999999975 4468999 899999999999999876524578
Q ss_pred EEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE------CccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCC
Q 011395 390 VVILGDMLELGSTERESHEKILSYCCDACIDLIGLV------GDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKS 463 (487)
Q Consensus 390 i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~------g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~ 463 (487)
++|+|. +|+++. ..+...+.+. +|.++++ |..+..+.+.+.. ...++++++|++.+.+.+++
T Consensus 327 i~Vfg~---~gdkd~---~~~l~~L~~~-~d~viv~~~~~~r~~~~~~l~~~~~~-----~~~~~~~~~Ai~~a~~~a~~ 394 (416)
T PRK10846 327 LAVIGM---LHDKDI---AGTLACLKSV-VDDWYCAPLEGPRGATAEQLAEHLGN-----GKSFDSVAQAWDAAMADAKP 394 (416)
T ss_pred EEEEEe---eCCCCH---HHHHHHHhhh-CCEEEEECCCCCCCCCHHHHHHHhhh-----CcccCCHHHHHHHHHHhcCC
Confidence 899987 344432 3455555554 6777655 3345566666532 24578999999999999999
Q ss_pred CCEEEEecCC
Q 011395 464 NDVVLVKGSR 473 (487)
Q Consensus 464 ~d~vLv~GSr 473 (487)
||+||++||-
T Consensus 395 gD~VLi~GS~ 404 (416)
T PRK10846 395 EDTVLVCGSF 404 (416)
T ss_pred CCEEEEECcH
Confidence 9999999994
No 40
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-40 Score=332.96 Aligned_cols=328 Identities=23% Similarity=0.291 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecC----CCCCCcch-----------------
Q 011395 115 LNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY----GNWNNRVG----------------- 173 (487)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~----g~~n~~~g----------------- 173 (487)
++-+.+|.....+|+.+.++|+|+|||||+||+.||.+||+++|++|+... -+||.++-
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 444455566666777789999999999999999999999999999986422 34555541
Q ss_pred ----------hhhHhhc----------CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCC-HHHHH
Q 011395 174 ----------VALSLIG----------IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGS-LEDVA 232 (487)
Q Consensus 174 ----------~p~~l~~----------~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs-~e~~~ 232 (487)
..+|.|+ .+.++|++|+|+|++++ .+.++++.|+++|||+|+.||.+++|+ +|+|+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGR---lDATNVi~p~vsvIT~I~lDH~~~LG~tie~IA 183 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGR---LDATNVIEPDVSVITSIGLDHTAFLGDTLESIA 183 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEecccccc---ccchhccCCceEEEcccChhHHHHhCCcHHHHH
Confidence 1122222 15679999999999887 667899999999999999999999986 99999
Q ss_pred HHHHhhcccCCCCCeEEEcC-CcHHHHhhc----CCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEE
Q 011395 233 RAKGEIFQESKLGDVCVLNA-DDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFV 307 (487)
Q Consensus 233 ~aK~~i~~~~~~~~~~vln~-Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 307 (487)
.+|+.|++ ++..+|+.. +.|.+...+ ...++++..++.+ +.... .+..|.+.+.+....+.
T Consensus 184 ~EKAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~ 249 (427)
T COG0285 184 REKAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD----FQVLE-------EGNGFSFQGGGGLLDLP 249 (427)
T ss_pred HHhhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc----hhhcc-------ccceEEEecCCeeeeec
Confidence 99999995 466777776 456555544 2223555555432 11111 13344444322333789
Q ss_pred eCCCchh-hHHHHHHHHHHHHHcCC--CHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccc
Q 011395 308 IPSPGLH-LAINACAAAAVATLFGV--SLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (487)
Q Consensus 308 l~l~G~~-nv~NalaAia~a~~lg~--~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~ 384 (487)
+|++|.| |+.|++.|++++..++. +.+.|.++|++..+ |||||++.. ++.|+.| -||||+|++++.+.+++..
T Consensus 250 lp~l~~~~Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~~--~p~i~lD-gAHNp~aa~~La~~l~~~~ 325 (427)
T COG0285 250 LPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDW-PGRLERLSE--NPLILLD-GAHNPHAARALAETLKTLF 325 (427)
T ss_pred cccccchhHHHHHHHHHHHHHHhcccCCHHHHHHHHHhCcC-CceEEEecC--CCeEEEE-CCCCHHHHHHHHHHHHHHh
Confidence 9988888 99999999999999985 89999999999997 999999996 4788889 8999999999999999887
Q ss_pred cCCc-EEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECc------cHHHHHHHhhhhcCCeEEEECCHHHHHHHH
Q 011395 385 CNGK-RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD------RFRAAAENMNLIKTDYIVVTNDAEILSQKI 457 (487)
Q Consensus 385 ~~~~-~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~------~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l 457 (487)
...+ +++|+|.+ .++....+.+.+... .++++++.- .+..+.+....... .. .++.++|++.+
T Consensus 326 ~~~~~~~~v~g~l------~dKd~~~~l~~L~~~-~~~~~~~~~~~~ra~~~~~l~~~~~~~~~--~~-~~~~~~a~~~~ 395 (427)
T COG0285 326 NDRPRLTLVFGML------KDKDIAGMLAALLPI-VDEIYTTPLPWPRALDAEELLAFAGERGG--VE-LDDVAEALELA 395 (427)
T ss_pred ccCCceEEEEEee------cCCCHHHHHHHhhcc-CcEEEEccCCCcccCCHHHHHHHHHhhcC--Cc-cccHHHHHHHH
Confidence 4444 78899863 456677888888876 577777732 23445554443321 11 68999999999
Q ss_pred HhhCCCCCEEEEecCC
Q 011395 458 VKRLKSNDVVLVKGSR 473 (487)
Q Consensus 458 ~~~~~~~d~vLv~GSr 473 (487)
.+...++|.|||.||-
T Consensus 396 ~~~~~~~~~ilV~GSl 411 (427)
T COG0285 396 LEKADEDDLVLVTGSL 411 (427)
T ss_pred HHhcCCCCeEEEEecH
Confidence 8877778999999994
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=1.9e-35 Score=306.08 Aligned_cols=324 Identities=19% Similarity=0.195 Sum_probs=228.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEe--cCC--CCCCcc----------------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--SYG--NWNNRV---------------- 172 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~--t~g--~~n~~~---------------- 172 (487)
.+++.|..|+.. .|..++++|+|||||||+||+.|+++||++.|++|+. ++. .++.++
T Consensus 44 rm~~~L~~LG~p--~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f 121 (530)
T PLN02881 44 LLFDYLKILELE--EAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYF 121 (530)
T ss_pred HHHHHHHHcCCC--chhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHH
Confidence 677777777742 2235689999999999999999999999999999863 222 222222
Q ss_pred ---------------hhh-----hHhhcC----CCCCcEEEEeccCCCcchHHhhcccc-CCcEEEEcCCChhhhhcCC-
Q 011395 173 ---------------GVA-----LSLIGI----DRAVDIAVLEMGMSGKGEILELARMA-RPEIRVVLNVGDSHLESLG- 226 (487)
Q Consensus 173 ---------------g~p-----~~l~~~----~~~~~~~V~E~g~~~~g~i~~~~~~~-~pdvaViTNI~~dHl~~~g- 226 (487)
+.| +|++.+ ..++|++|+|+|+++..+ .++++ +|+++|||||+.||+++||
T Consensus 122 ~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~D---aTnvi~~p~v~vITnIg~DH~~~LG~ 198 (530)
T PLN02881 122 WWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLD---ATNVVQKPVVCGITSLGYDHMEILGD 198 (530)
T ss_pred HHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCch---hhhccCCCCEEEEccccHHHHHhhcC
Confidence 123 233222 678999999999977743 34444 8999999999999999999
Q ss_pred CHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhc----CCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecce
Q 011395 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (487)
Q Consensus 227 s~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~ 302 (487)
|+|+|+.+|++||+ ++..+|+...++.+..++ .+.+++++.++.. . .+.+ .
T Consensus 199 Tle~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~------------~------~~~~--~-- 253 (530)
T PLN02881 199 TLGKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL------------D------SYGL--S-- 253 (530)
T ss_pred CHHHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc------------c------ccee--c--
Confidence 79999999999994 567778776666665554 1223444433210 0 0111 1
Q ss_pred EEEEEeCCCchhhHHHHHHHHHHHHHc---------------CCCHHHHHHHhcCCCCCCCceeEEee-------cCCeE
Q 011395 303 MVKFVIPSPGLHLAINACAAAAVATLF---------------GVSLAQVGISLSNFSPVQMRSELLVS-------RSGIK 360 (487)
Q Consensus 303 ~~~~~l~l~G~~nv~NalaAia~a~~l---------------g~~~~~i~~~L~~~~~~~gR~e~~~~-------~~~~~ 360 (487)
.+.+++.|.||..|+++|++++..+ ...++.+.++|+++.+ |||||++.. .+++.
T Consensus 254 --~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~ 330 (530)
T PLN02881 254 --GLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLV 330 (530)
T ss_pred --ccCCCCCChhHHHhHHHHHHHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCe
Confidence 3568899999999999999998865 2345689999999996 999999963 14568
Q ss_pred EEEecCCCCHHHHHHHHHHHHccc--------------------------cCCcEEEEEcCCCCCCcc-cHHHHHHHHHH
Q 011395 361 IVNDAYNANPISTRAAIDLLKDIA--------------------------CNGKRVVILGDMLELGST-ERESHEKILSY 413 (487)
Q Consensus 361 ii~Dsya~np~s~~~~l~~l~~~~--------------------------~~~~~i~Vlg~m~e~G~~-~~~~~~~~~~~ 413 (487)
+|.| .||||+||+++.++++... +..++++|||+| +++ .....+.+.+.
T Consensus 331 ~~LD-GAHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~---~dkD~~~lL~~L~~~ 406 (530)
T PLN02881 331 FYLD-GAHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCM---SVRDPQLLLPPLANT 406 (530)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCC---CCCCHHHHHHHHHHH
Confidence 9999 8999999999999986522 123689999986 333 33444455555
Q ss_pred HHH--cCCCEEEEECccH---------------------HHHHHHhhhh---c----------------------CCeEE
Q 011395 414 CCD--ACIDLIGLVGDRF---------------------RAAAENMNLI---K----------------------TDYIV 445 (487)
Q Consensus 414 l~~--~~~d~vi~~g~~~---------------------~~i~~~~~~~---~----------------------~~~~~ 445 (487)
+.+ ..+|+++++.... +.+++..++. . .....
T Consensus 407 ~~~~~~~f~~aiF~~n~~~~~~~~~~~~~~~~~~~l~~q~~l~~~W~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (530)
T PLN02881 407 CASNGVPFKKALFVPNISVYNKVGSGLPVDDPQVDLSWQFTLQRVWESLIRGKAGAPADAVCEESASSGLNDGKSDENSA 486 (530)
T ss_pred HHhcCCCCCeEEEcCCccccCCCcccCCCcchhhhHHHHHHHHHHHHHhccccccccccccccccccccccCCCCCCcee
Confidence 542 3489999875321 1122222211 0 12567
Q ss_pred EECCHHHHHHHHHhhCCCCC----EEEEecCC
Q 011395 446 VTNDAEILSQKIVKRLKSND----VVLVKGSR 473 (487)
Q Consensus 446 ~~~d~~~ai~~l~~~~~~~d----~vLv~GSr 473 (487)
++++.++|++++.+...+.. -|||.||-
T Consensus 487 v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGSl 518 (530)
T PLN02881 487 VFPSLPLAIKWLRDCARENPSLRFQVLVTGSL 518 (530)
T ss_pred EecCHHHHHHHHHHHhhhCCCcceEEEEecch
Confidence 89999999999988775432 48999994
No 42
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=2.9e-35 Score=272.19 Aligned_cols=186 Identities=37% Similarity=0.559 Sum_probs=156.0
Q ss_pred EeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCC-CCCcEEEEeccCCCcchHHhhccccCCcEEEEc
Q 011395 137 VTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGID-RAVDIAVLEMGMSGKGEILELARMARPEIRVVL 215 (487)
Q Consensus 137 VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~-~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViT 215 (487)
||||||||||++||+++|++.|..+ .+.|++|+.+|.+..+..+. .+++++|+|+|+++.++ .++..+++|+++|||
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~p~i~viT 78 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVV-GTIGNTNNQIGLPLLLLNAREGGADIAVLEVSEGGLGD-ERLSFLLKPDIAVIT 78 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEE-EEESSCHHHHHHHHHHHHHHHTTSSEEEEEESSSCCCT-STTSGGSBESEEEE-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcc-cccccccchHHHHHHHhhhcccccceeeeeccCCcccc-ceeeeeeehheeeec
Confidence 8999999999999999998887654 57888888899888777654 48999999999988776 677766899999999
Q ss_pred CCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEE
Q 011395 216 NVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (487)
Q Consensus 216 NI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~ 295 (487)
||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.......+.++++|+.+.+.+++... +....++..|
T Consensus 79 ni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--i~~~~~~~~~ 156 (188)
T PF08245_consen 79 NIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASN--ISYSEEGGRF 156 (188)
T ss_dssp ---SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEE--EEEETTEEEE
T ss_pred eecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeee--EEEecCCcEE
Confidence 99999999999999999999999999999999999999997776662223679999999888888877 8887778777
Q ss_pred EEe-ecceEEEEEeCCCchhhHHHHHHHHHHH
Q 011395 296 VLE-KEREMVKFVIPSPGLHLAINACAAAAVA 326 (487)
Q Consensus 296 ~~~-~~~~~~~~~l~l~G~~nv~NalaAia~a 326 (487)
.+. .+....+++++++|.||++|+++|+++|
T Consensus 157 ~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 157 RIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 654 3333348999999999999999999986
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.98 E-value=1.7e-31 Score=291.80 Aligned_cols=221 Identities=29% Similarity=0.296 Sum_probs=161.5
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCCCCCCcch-------hhhH--hhcCCCCCcEEEEeccCCCc
Q 011395 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVG-------VALS--LIGIDRAVDIAVLEMGMSGK 197 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g~~n~~~g-------~p~~--l~~~~~~~~~~V~E~g~~~~ 197 (487)
..++|+|+||||||||||++||+++|+..|++++ ++.|.+++... .|.+ .+..++++|++|+|+|..+
T Consensus 477 ~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~- 555 (727)
T PRK14016 477 DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGRLIDKGDCTGPKSARRVLMNPDVEAAVLETARGG- 555 (727)
T ss_pred CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCEEeccccccCHHHHHHHhcCCCCCEEEEEcCCCc-
Confidence 4568999999999999999999999999998874 46666644332 2333 2335678899999998433
Q ss_pred chHHhhccccCCcEEEEcCCChhhhhcCC--CHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCC
Q 011395 198 GEILELARMARPEIRVVLNVGDSHLESLG--SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRR 275 (487)
Q Consensus 198 g~i~~~~~~~~pdvaViTNI~~dHl~~~g--s~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~ 275 (487)
.+.......+||++|||||++|||++|+ |+|+|+++|+.+++.++++|.+|+|+||+.+..+....++++++|+.++
T Consensus 556 -il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~ 634 (727)
T PRK14016 556 -ILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVKPDGYAVLNADDPMVAAMAERCKGKVIFFSMDP 634 (727)
T ss_pred -hhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhCCCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCC
Confidence 3344455679999999999999999875 9999999999999998899999999999998887732236789998764
Q ss_pred CceEEEEe----c-eEEecCCeEEEEEeecceE-----EEEEeCCCc--hhhHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 011395 276 GCDVRLVA----A-QVANGGLGVQVVLEKEREM-----VKFVIPSPG--LHLAINACAAAAVATLFGVSLAQVGISLSNF 343 (487)
Q Consensus 276 ~~d~~~~~----~-~i~~~~~~~~~~~~~~~~~-----~~~~l~l~G--~~nv~NalaAia~a~~lg~~~~~i~~~L~~~ 343 (487)
+.++.... + .+....+.+.+. .+..+. ..+.+.++| .||++|++||+|+++.+|++++.|+++|++|
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~g~~~~~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~lGi~~~~I~~~L~sF 713 (727)
T PRK14016 635 DNPVIAEHRAQGGRAVYVEGDYIVLA-EGGWEIRIISLADIPLTLGGKAGFNIENALAAIAAAWALGIDIELIRAGLRTF 713 (727)
T ss_pred CChHHHHHHHhCCceEEEeCCEEEEE-eCCcceeeccccccceecCCcchhhHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 33221110 0 000111111111 111000 023443355 7999999999999999999999999999999
Q ss_pred CC----CCCceeE
Q 011395 344 SP----VQMRSEL 352 (487)
Q Consensus 344 ~~----~~gR~e~ 352 (487)
++ .||||+.
T Consensus 714 ~~~~~~~pGR~n~ 726 (727)
T PRK14016 714 VSDAAQAPGRFNL 726 (727)
T ss_pred CCCccCCCccccc
Confidence 96 8999985
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.95 E-value=6.6e-27 Score=233.12 Aligned_cols=324 Identities=18% Similarity=0.197 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEec--CC--CCCCcc---hhh----------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS--YG--NWNNRV---GVA---------- 175 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t--~g--~~n~~~---g~p---------- 175 (487)
.+++.|..++.. .. ..++.+|+|+||+||.||+.++.+||++.|++++.. +- +...+| |.|
T Consensus 55 ~m~~~L~~lg~p-~d-~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f 132 (496)
T KOG2525|consen 55 RMRKLLERLGNP-ED-QNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYF 132 (496)
T ss_pred HHHHHHHHhCCh-hh-hhheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHH
Confidence 556666666554 22 667999999999999999999999999999998531 11 111111 111
Q ss_pred -----------------------hHhhc----CCCCCcEEEEeccCCCcchHHhhcccc-CCcEEEEcCCChhhhhcCCC
Q 011395 176 -----------------------LSLIG----IDRAVDIAVLEMGMSGKGEILELARMA-RPEIRVVLNVGDSHLESLGS 227 (487)
Q Consensus 176 -----------------------~~l~~----~~~~~~~~V~E~g~~~~g~i~~~~~~~-~pdvaViTNI~~dHl~~~gs 227 (487)
+|+.. ...++|++|+|+|+++. .+.++++ +|-++.||+||.||++++|+
T Consensus 133 ~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~---~DaTNvI~kpvvcgITslG~DH~~~LG~ 209 (496)
T KOG2525|consen 133 WEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGE---LDATNVIEKPVVCGITSLGLDHTSFLGN 209 (496)
T ss_pred HHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEEeccccc---cccccccccceEEEEeecCCchHHHHhh
Confidence 11111 26799999999999877 4556655 79999999999999999986
Q ss_pred -HHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEE
Q 011395 228 -LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKF 306 (487)
Q Consensus 228 -~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 306 (487)
+++|+.+|+.||+ ++..+++-..++.+..++..+ +.- ..+.....+ ......+ ...
T Consensus 210 tL~eIA~eKAGIfK---~gvpaft~~q~~e~~nvL~~r-a~e------~~~~L~~v~-------p~~~~~l------s~~ 266 (496)
T KOG2525|consen 210 TLSEIAWEKAGIFK---EGVPAFTVPQPPEALNVLKER-ASE------LGVPLFVVP-------PLEAYEL------SGV 266 (496)
T ss_pred HHHHHHHHhccccc---cCCceEEcCCcHHHHHHHHHH-HHh------cCCCceecC-------Cchhhhh------cCC
Confidence 9999999999995 466677766777777776110 100 000111100 0000000 023
Q ss_pred EeCCCchhhHHHHHHHHHHHHHc----C---------------CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCC
Q 011395 307 VIPSPGLHLAINACAAAAVATLF----G---------------VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYN 367 (487)
Q Consensus 307 ~l~l~G~~nv~NalaAia~a~~l----g---------------~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya 367 (487)
.+.+.|.||..|+..|+.++..+ | +|+ ....+|+++.+ |||.|++..+++.+++.| .|
T Consensus 267 ~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~w-PGR~qil~~~~~~~~llD-GA 343 (496)
T KOG2525|consen 267 NLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTDW-PGRLQILEYGRGVTWLLD-GA 343 (496)
T ss_pred cccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCH-HHhcchhhccC-CCceEEEecCCCcEEEec-CC
Confidence 47788999999999999887753 1 344 45559999997 999999998778889999 99
Q ss_pred CCHHHHHHHHHHHHc-cc--cCCc-EEEEEcCCCCCCcccHHHHHHHHHHHHH-----cCCCEEEEECcc-------H--
Q 011395 368 ANPISTRAAIDLLKD-IA--CNGK-RVVILGDMLELGSTERESHEKILSYCCD-----ACIDLIGLVGDR-------F-- 429 (487)
Q Consensus 368 ~np~s~~~~l~~l~~-~~--~~~~-~i~Vlg~m~e~G~~~~~~~~~~~~~l~~-----~~~d~vi~~g~~-------~-- 429 (487)
|||+||+++-+++++ .. .+.+ +|++|.+| |++ ....+.+.+.. .+++.|+++... .
T Consensus 344 Ht~eSaea~~~w~~~~~~~~~~~~~~illfn~t---~~~---d~~~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~~~d 417 (496)
T KOG2525|consen 344 HTKESAEACAKWFRKAVRGLKKLTSLILLFNCT---SDR---DPPLLLPLLKPDAVIGTRFSSVVFMPNITSSSPVGSAD 417 (496)
T ss_pred CCHHHHHHHHHHHHHHhccCCCccceEEEEEec---CCc---chHhHhHHhccccccccccceEEecccccccCCccchh
Confidence 999999999999987 32 1222 58888875 333 33445555554 457888875211 0
Q ss_pred ---------------HHHH---HHhhhhc---CCeEEEECCHHHHHHHHHhhCCCCCEEEEecCC
Q 011395 430 ---------------RAAA---ENMNLIK---TDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSR 473 (487)
Q Consensus 430 ---------------~~i~---~~~~~~~---~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr 473 (487)
..+. ..+.... .....++.+...|++.+.......+-+.+.||-
T Consensus 418 ~~~~~~s~~~~l~~q~~L~~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~gsl 482 (496)
T KOG2525|consen 418 SISLNTSTEEQLNWQNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVLGSL 482 (496)
T ss_pred hhhccCCchHHHHHhHHHHHHHHHHhhcCCCceeeeeEeccHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 0121 2222211 123567899999999998766555667777883
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.62 E-value=8.8e-16 Score=124.42 Aligned_cols=83 Identities=33% Similarity=0.540 Sum_probs=72.9
Q ss_pred CCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE
Q 011395 346 VQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (487)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~ 425 (487)
+|||||++...++++||+| |||||+|+++++++++++.+.+++++|+|+|.++|.++.+.|.++++.+..+ .|.|+++
T Consensus 1 vpgR~e~v~~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~-~d~vi~~ 78 (91)
T PF02875_consen 1 VPGRMEVVREPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQL-ADVVILT 78 (91)
T ss_dssp ETTSSEEEEEETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTC-SSEEEEE
T ss_pred CCCCcEEEeeCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhc-CCEEEEc
Confidence 4899999998889999999 9999999999999999986578999999999999999999999999999987 7889999
Q ss_pred CccHH
Q 011395 426 GDRFR 430 (487)
Q Consensus 426 g~~~~ 430 (487)
+++++
T Consensus 79 ~~~~r 83 (91)
T PF02875_consen 79 GDNPR 83 (91)
T ss_dssp TSBTT
T ss_pred CCCCC
Confidence 88764
No 46
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=99.41 E-value=6.9e-15 Score=116.98 Aligned_cols=72 Identities=32% Similarity=0.479 Sum_probs=63.7
Q ss_pred CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEecccc--C--C-----CCccEEEEcCCCCccHHH
Q 011395 46 PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVC--N--N-----WDKGFVQVEGNGNVNTLN 116 (487)
Q Consensus 46 ~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~--~--~-----~~~~~i~V~~~~~~d~~~ 116 (487)
|++|++|||.+++ |++|||++|.++|||+|+++|++ +||.++++++.. . . ...++|.|+ |+++
T Consensus 2 i~~i~~dSr~v~~--g~lF~a~~G~~~dG~~fi~~a~~-~Ga~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-----~~~~ 73 (83)
T PF01225_consen 2 IHGISIDSRKVSP--GALFFAIKGERVDGHDFIEDAIA-KGAAAVVVDKDASISPDNPEVPAADVPVIPVE-----DTRQ 73 (83)
T ss_dssp EEEEETTSGGHHH--HHHHHHHTTSEEEEECSCHHHHH-TT-EEEESSSGGTSTTTSHHHHHHHHTTEEEE-----EHHH
T ss_pred EEEEEECcCccCh--hHEEEEcCCccccchhhhhHHHH-CCCeEEEEcCccccccccHhHHhcCCCEEEEC-----CHHH
Confidence 5789999999999 99999999999999999999999 999999999876 1 1 146889999 9999
Q ss_pred HHHHHHHHH
Q 011395 117 SLVNMACYA 125 (487)
Q Consensus 117 aL~~la~~~ 125 (487)
+|+.|++.+
T Consensus 74 ~L~~la~~~ 82 (83)
T PF01225_consen 74 ALGELAAAF 82 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999843
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=97.38 E-value=0.00077 Score=56.35 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc--CCeE
Q 011395 367 NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK--TDYI 444 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~--~~~~ 444 (487)
.-||.++..+|+++.....+...++++.+..--|.+......--.+.+...++.++++.|..+.+++-+++-.+ ..++
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~~i~~viv~G~Ra~DmalRLkyAGv~~~~i 81 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADPNIKQVIVSGTRAEDMALRLKYAGVDEEKI 81 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcCCCCEEEEEeeeHHHHHhHeeecCcchHHe
Confidence 35999999999999776545567778887665666644444444455565568899999999999999998776 2357
Q ss_pred EEECCHHHHHHHHHhhCCCCCEEEEe
Q 011395 445 VVTNDAEILSQKIVKRLKSNDVVLVK 470 (487)
Q Consensus 445 ~~~~d~~~ai~~l~~~~~~~d~vLv~ 470 (487)
...+|.++|++.+.....+++.+.+.
T Consensus 82 ~v~~d~~~a~~~~~~~~~~~~~~yil 107 (113)
T PF08353_consen 82 IVEEDLEEALDAFLIKSDPTDKVYIL 107 (113)
T ss_pred EecCCHHHHHHHHHHhcCCCCcEEEE
Confidence 78999999999966666667766654
No 48
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.50 E-value=0.2 Score=48.72 Aligned_cols=122 Identities=24% Similarity=0.361 Sum_probs=74.5
Q ss_pred HHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEe---------cCCCC-CCcc----------------
Q 011395 121 MACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV---------------- 172 (487)
Q Consensus 121 la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~---------t~g~~-n~~~---------------- 172 (487)
|...+.. .-+.++|||||+ .||||...-|..-|+..|.+|.. |.|.+ .+++
T Consensus 41 l~~l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~ 119 (323)
T COG1703 41 LRALYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS 119 (323)
T ss_pred HHHHhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec
Confidence 3344444 456789999999 57999999999999999998741 22221 1111
Q ss_pred -------hhhh------HhhcCCCCCcEEEEeccCCCcchHH-hhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhh
Q 011395 173 -------GVAL------SLIGIDRAVDIAVLEMGMSGKGEIL-ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEI 238 (487)
Q Consensus 173 -------g~p~------~l~~~~~~~~~~V~E~g~~~~g~i~-~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i 238 (487)
|+.. .+++ ..+.|+.++|.. +.|+-+ .+.+ ..|+.+++-+. .+| +++.--|+.+
T Consensus 120 ~srG~lGGlS~at~~~i~~ld-AaG~DvIIVETV--GvGQsev~I~~--~aDt~~~v~~p-----g~G--D~~Q~iK~Gi 187 (323)
T COG1703 120 PSRGTLGGLSRATREAIKLLD-AAGYDVIIVETV--GVGQSEVDIAN--MADTFLVVMIP-----GAG--DDLQGIKAGI 187 (323)
T ss_pred CCCccchhhhHHHHHHHHHHH-hcCCCEEEEEec--CCCcchhHHhh--hcceEEEEecC-----CCC--cHHHHHHhhh
Confidence 1111 1111 358999999983 333211 2333 24665655542 233 4555668888
Q ss_pred cccCCCCCeEEEcCCcHHHH
Q 011395 239 FQESKLGDVCVLNADDPLVA 258 (487)
Q Consensus 239 ~~~~~~~~~~vln~Dd~~~~ 258 (487)
++- ...+|+|..|..-.
T Consensus 188 mEi---aDi~vINKaD~~~A 204 (323)
T COG1703 188 MEI---ADIIVINKADRKGA 204 (323)
T ss_pred hhh---hheeeEeccChhhH
Confidence 865 67999999885443
No 49
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.55 E-value=0.31 Score=46.63 Aligned_cols=123 Identities=22% Similarity=0.327 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEe---------cCCCC-CCcc-------------
Q 011395 118 LVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ---------SYGNW-NNRV------------- 172 (487)
Q Consensus 118 L~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~---------t~g~~-n~~~------------- 172 (487)
-..|...+.+ ..+..+|||||+ .||||...-|...|++.|.+|.. |.|.+ ..++
T Consensus 16 ~~ll~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 16 RELLKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 3344555555 456789999998 57999999999999899998742 22221 1111
Q ss_pred ----------hhhhHhhc----C-CCCCcEEEEec-cCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHH
Q 011395 173 ----------GVALSLIG----I-DRAVDIAVLEM-GMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKG 236 (487)
Q Consensus 173 ----------g~p~~l~~----~-~~~~~~~V~E~-g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~ 236 (487)
|++....+ + ..+.|+.++|. |.++ .++ ++.++.+.-+.|++.=.-|-+. ..|+
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQ-sE~-~I~~~aD~~v~v~~Pg~GD~iQ---------~~Ka 163 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQ-SEV-DIADMADTVVLVLVPGLGDEIQ---------AIKA 163 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSST-HHH-HHHTTSSEEEEEEESSTCCCCC---------TB-T
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCc-cHH-HHHHhcCeEEEEecCCCccHHH---------HHhh
Confidence 12211111 1 35789999998 3322 233 3344445455555544434333 3466
Q ss_pred hhcccCCCCCeEEEcCCcH
Q 011395 237 EIFQESKLGDVCVLNADDP 255 (487)
Q Consensus 237 ~i~~~~~~~~~~vln~Dd~ 255 (487)
.+++- ...+|+|..|.
T Consensus 164 GimEi---aDi~vVNKaD~ 179 (266)
T PF03308_consen 164 GIMEI---ADIFVVNKADR 179 (266)
T ss_dssp THHHH----SEEEEE--SH
T ss_pred hhhhh---ccEEEEeCCCh
Confidence 66654 56889998773
No 50
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.28 E-value=2.3 Score=42.75 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+..+|+|||+. ||||++..+...|+..|.++.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4456799999986 799999999999988888875
No 51
>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2.3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.
Probab=91.28 E-value=0.48 Score=36.09 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=37.3
Q ss_pred cccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC---CCCccEEEEcCCCCccHHHHHHHHHHH
Q 011395 56 LAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN---NWDKGFVQVEGNGNVNTLNSLVNMACY 124 (487)
Q Consensus 56 v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~---~~~~~~i~V~~~~~~d~~~aL~~la~~ 124 (487)
..+ |+|=|. +...|++.+.. -.|.++|+++... ..+.++|+|+ |++.++.++.++
T Consensus 14 A~~--~~isF~------~~~ky~~~l~~-s~A~avlv~~~~~~~~~~~~~~iiv~-----nP~~afa~~~~~ 71 (72)
T PF04613_consen 14 AGP--GDISFL------DNPKYLKELKN-SKAGAVLVPEEFAEEVPEGKALIIVD-----NPRLAFAKLLQL 71 (72)
T ss_dssp --T--TEEEEE-------SSCGGGGGGG----SEEEEEHHHHTCCCSSSEEEECS------HHHHHHHHHHH
T ss_pred cCC--CCEEEe------cCHHHHHHHHh-CCCeEEEEcchhcccCCCCccEEEEC-----CHHHHHHHHHHh
Confidence 466 888666 34578888777 7888899987622 2378999999 999999998864
No 52
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=91.18 E-value=0.64 Score=46.52 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCCCceEec
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
+.+.|+|.| .|-.|||+++..|...|++.|++++.-
T Consensus 46 ~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 46 RAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 346789999 899999999999999999999998643
No 53
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=89.37 E-value=0.43 Score=45.26 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.4
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceEecCC
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYG 166 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g 166 (487)
+|+|+|.-||||+..-|+.-|++.|++|..|..
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999875544
No 54
>PRK15453 phosphoribulokinase; Provisional
Probab=88.99 E-value=0.54 Score=45.83 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCC
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALALESLG 158 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (487)
.+.++|+|||+. ||||+++.++++|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999985 79999999999995433
No 55
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=88.73 E-value=1.9 Score=43.08 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=50.0
Q ss_pred CCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 011395 61 NQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS 140 (487)
Q Consensus 61 g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGT 140 (487)
+-+||. |.. +..+....|++ .||.-++.-+.. -. ...+++..+ ...+....++|+|+|.
T Consensus 43 ~vv~v~--~~~-~~~~~~~~a~~-~Ga~~~l~~P~~---------~~-----~l~~~l~~~---~~~~~~~~~vIav~~~ 101 (322)
T TIGR03815 43 RVVLVG--GGE-PGGALWRAAAA-VGAEHVAVLPEA---------EG-----WLVELLADL---DQSPPARGVVVAVIGG 101 (322)
T ss_pred CEEEEe--CCC-CCHHHHHHHHH-hChhheeeCCCC---------HH-----HHHHHHHhh---ccCCCCCceEEEEEcC
Confidence 545555 333 34566778898 998655543211 11 233333333 2333445788888865
Q ss_pred ---CChHhHHHHHHHHHHhCCCceE
Q 011395 141 ---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 141 ---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.||||++.-|+..|...|++|.
T Consensus 102 KGGvGkTT~a~nLA~~la~~g~~Vl 126 (322)
T TIGR03815 102 RGGAGASTLAAALALAAARHGLRTL 126 (322)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCEE
Confidence 5799999999999977777764
No 56
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=88.41 E-value=1.3 Score=43.94 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=65.6
Q ss_pred ccCHHHHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC---CC
Q 011395 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (487)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~---~~ 100 (487)
.++|+||++.++.++.++.+ ++++..=.+ ..+ ++++|. +...|.++... -.|.++++++.... .+
T Consensus 3 ~~~l~~la~~~~~e~~g~~~~~i~~va~l~~-a~~--~~i~f~------~~~ky~~~l~~-s~Agaviv~~~~~~~~~~~ 72 (338)
T COG1044 3 SYTLAELAQQLGAELRGDGDRVITGVAPLDE-AQP--GDISFL------ANPKYRKELKT-SRAGAVIVSAKDAAFAPAK 72 (338)
T ss_pred cchHHHHHHhhCcEEecCCceeeeecchhhh-cCc--ccceee------cChhhhhhccc-CcccEEEecHHHHhcccCC
Confidence 46899999999998877543 666654333 357 888877 66778888887 88899999875432 25
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHHhh
Q 011395 101 KGFVQVEGNGNVNTLNSLVNMACYARN 127 (487)
Q Consensus 101 ~~~i~V~~~~~~d~~~aL~~la~~~~~ 127 (487)
.+++.++ |+..+++.++.++-.
T Consensus 73 ~~~Lv~~-----~P~~~fA~~~~~f~~ 94 (338)
T COG1044 73 KNALVVK-----DPYLAFAKVAQLFYR 94 (338)
T ss_pred ceEEEeC-----CchHHHHHHHHHhcc
Confidence 6789999 999999999994444
No 57
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=87.82 E-value=0.88 Score=46.82 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHH-HhhcCCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 113 NTLNSLVNMACY-ARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 113 d~~~aL~~la~~-~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+....++.. .|.+..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVL 139 (387)
T PHA02519 86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVL 139 (387)
T ss_pred HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEE
Confidence 555555555543 33333457899999 888899999999999988899985
No 58
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=87.61 E-value=0.73 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++++|+|. .||||..+=|-..|++.|++|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEE
Confidence 579999998 4899999999999999999985
No 59
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=87.47 E-value=0.64 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=21.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.|+||||- ||||++..|+ -| |+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCcee
Confidence 369999995 7999999988 55 67764
No 60
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=86.84 E-value=0.97 Score=46.56 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.0
Q ss_pred cHHHHHHHHHH-HHhhcCCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 113 NTLNSLVNMAC-YARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 113 d~~~aL~~la~-~~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+..+.+..+.. ..+.+....++|+|+ |=.|||||+.-|++.|...|++|..
T Consensus 86 ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLl 140 (388)
T PRK13705 86 QINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLL 140 (388)
T ss_pred HHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEE
Confidence 55555555554 333334457899999 8889999999999999888999853
No 61
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=86.79 E-value=1.4 Score=44.98 Aligned_cols=52 Identities=27% Similarity=0.289 Sum_probs=40.5
Q ss_pred CccHHHHHHHHHHHHhh-cCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 111 NVNTLNSLVNMACYARN-SRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 111 ~~d~~~aL~~la~~~~~-p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|+|+.+-|+++-..... +..+.++|+|+|. .||||...-|-..|++.|++|+
T Consensus 183 nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~ 237 (366)
T PRK14489 183 NVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIG 237 (366)
T ss_pred cCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 77888888776654331 2335789999994 6899999999999988899985
No 62
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=86.58 E-value=3 Score=42.13 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=57.6
Q ss_pred ccCHHHHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC---CC
Q 011395 26 IWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN---WD 100 (487)
Q Consensus 26 ~~~l~~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~---~~ 100 (487)
+|+|+||++.+++.+.++.+ +++++.=. ...+ ++|=|. +...|.+..-. -.|.++|+++.... ..
T Consensus 2 ~~~l~~i~~~~~~~~~~~~~~~i~gva~l~-~a~~--~~LsFl------~~~k~~~~l~~-~~A~a~Iv~~d~~~~~p~~ 71 (343)
T PRK00892 2 SLTLAELAELLGAELVGDGDIEITGVASLE-EAGP--GQISFL------ANPKYRKQLAT-TKAGAVIVSPDDAEFVPAG 71 (343)
T ss_pred CccHHHHHHHhCCEEeCCCCceEEeecccc-cCCC--CeEEEE------cCchhHHHHhc-cCCeEEEechhhhhhccCC
Confidence 57999999999998876443 45553322 2356 787444 23456665545 78888888776432 14
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHH
Q 011395 101 KGFVQVEGNGNVNTLNSLVNMACYA 125 (487)
Q Consensus 101 ~~~i~V~~~~~~d~~~aL~~la~~~ 125 (487)
..++.++ |+..++..+.+.+
T Consensus 72 ~~~i~~~-----~p~~~~~~~~~~~ 91 (343)
T PRK00892 72 NALLVVK-----NPYLAFARLAQLF 91 (343)
T ss_pred ceEEEeC-----CHHHHHHHHHHHh
Confidence 5677899 9999999888743
No 63
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=86.19 E-value=1.6 Score=40.30 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=27.5
Q ss_pred CCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
....++|+||++ .||||++..|+..|...|++|.
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVl 50 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTL 50 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 344788998855 4799999999999987788875
No 64
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=85.63 E-value=3.6 Score=35.79 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=23.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|+|+|.|- .||||.++.|-..|.+.|+++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 57788875 5999999999999988999985
No 65
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.53 E-value=1.1 Score=35.15 Aligned_cols=40 Identities=33% Similarity=0.387 Sum_probs=31.6
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccC
Q 011395 135 VGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (487)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~ 194 (487)
|.++|. .||||++..++..|.+.|+++.... |+.+++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~--------------------d~iivD~~~ 43 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID--------------------DYVLIDTPP 43 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC--------------------CEEEEeCCC
Confidence 556655 6999999999999988888875322 888888863
No 66
>PRK06696 uridine kinase; Validated
Probab=85.15 E-value=2.5 Score=39.78 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHh-hcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 115 LNSLVNMACYAR-NSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 115 ~~aL~~la~~~~-~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
.+.+++|+.... .......+|||+|- .||||.+..|+..|...|..+
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v 53 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPV 53 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 345666776332 21344679999985 689999999999997666554
No 67
>PRK05439 pantothenate kinase; Provisional
Probab=84.76 E-value=1.2 Score=44.14 Aligned_cols=43 Identities=23% Similarity=0.372 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhc-CCCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 114 TLNSLVNMACYARNS-RFSGVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 114 ~~~aL~~la~~~~~p-~~~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..+.-..+..|+..+ .....+|||||+. ||||++..|..+|..
T Consensus 67 ~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 67 NQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred hHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 333334444455421 2345689999985 699999999999953
No 68
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=84.31 E-value=0.93 Score=41.70 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=22.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCc
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (487)
+|||+|- .||||++..|...|.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 6888884 68999999999999766655
No 69
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=84.27 E-value=1.2 Score=46.22 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=30.7
Q ss_pred hhcCCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|.|..+.++|+|+ |=.|||||+.-|++.|...|++|.
T Consensus 115 r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVL 154 (405)
T PRK13869 115 RRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVL 154 (405)
T ss_pred CCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceE
Confidence 3334456899998 788899999999999988899985
No 70
>COG2403 Predicted GTPase [General function prediction only]
Probab=84.20 E-value=1.1 Score=44.75 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=29.0
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..|+|+|||| .|||+++.+++++|++.||++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 3689999998 5999999999999999999975
No 71
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=83.73 E-value=1.6 Score=41.19 Aligned_cols=31 Identities=32% Similarity=0.299 Sum_probs=28.0
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.+-||||. |||.++..|.+.|++.|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4678999996 999999999999999999875
No 72
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=83.69 E-value=0.62 Score=49.21 Aligned_cols=96 Identities=20% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhc----CCCCCcEEEEeccCCCcchHHhhcc
Q 011395 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG----IDRAVDIAVLEMGMSGKGEILELAR 205 (487)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~----~~~~~~~~V~E~g~~~~g~i~~~~~ 205 (487)
...++|.|+||+||++|..+....+.+.+.++.+..|. |...++...+.+ ....+.+...|.-.-+++... -..
T Consensus 62 ~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGT-NgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~-~~~ 139 (475)
T COG0769 62 AGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGT-NGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILE-PTG 139 (475)
T ss_pred cCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCC-CcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCccc-ccC
Confidence 34669999999999999999999996655777655553 444443322222 233456666665322233333 233
Q ss_pred ccCCcEEEEcCCChhhhhcCCC
Q 011395 206 MARPEIRVVLNVGDSHLESLGS 227 (487)
Q Consensus 206 ~~~pdvaViTNI~~dHl~~~gs 227 (487)
...|+...++|+..|+++..++
T Consensus 140 ~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 140 LTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred CCCccHHHHHHHHHHHHHcCCc
Confidence 5789999999999999998875
No 73
>PRK07667 uridine kinase; Provisional
Probab=83.46 E-value=2.3 Score=39.14 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=25.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
..+|||+|- .||||++..|.+.|.+.|.++
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 479999996 689999999999997666654
No 74
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=83.29 E-value=3.1 Score=40.46 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.8
Q ss_pred HHHHHHHHHHH--HhhcCCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 114 TLNSLVNMACY--ARNSRFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 114 ~~~aL~~la~~--~~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+++..|... +.......++|+|| |-.||||++..|+..|.+.|.+|.
T Consensus 83 ~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vl 136 (274)
T TIGR03029 83 QVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTL 136 (274)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 45666666652 22224557899999 667999999999999977777765
No 75
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=82.31 E-value=4.2 Score=37.74 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=27.3
Q ss_pred CCCCcEEEEe---CCCChHhHHHHHHHHHHh-CCCceE
Q 011395 129 RFSGVLVGVT---GSVGKSTTKSMIALALES-LGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~-~g~~v~ 162 (487)
....++|+|| |-.||||++..|++.|-. .|++|.
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VL 69 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVL 69 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 3457899999 577999999999999943 577775
No 76
>COG4240 Predicted kinase [General function prediction only]
Probab=82.20 E-value=3.5 Score=38.78 Aligned_cols=49 Identities=31% Similarity=0.408 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCC-CceE
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLG-VNVF 162 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g-~~v~ 162 (487)
-....+.+++.++.. ..+.-++||.|. .||||++..|..+|...| +++.
T Consensus 32 l~Lpll~Kiap~~qe-~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~ 83 (300)
T COG4240 32 LHLPLLAKIAPWAQE-RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTA 83 (300)
T ss_pred HHHHHHHhhhhhhhh-cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceE
Confidence 456666666654433 555668999998 579999999999998777 4553
No 77
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=81.89 E-value=2 Score=40.69 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=26.9
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+| -.||||+..-|...|+..|++|.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~ 33 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVA 33 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEE
Confidence 46899999 78999999988888988899885
No 78
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=81.55 E-value=4 Score=40.94 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=56.5
Q ss_pred HHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC--CCccEEEE
Q 011395 31 EIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN--WDKGFVQV 106 (487)
Q Consensus 31 ~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~--~~~~~i~V 106 (487)
||++.+++++.++.+ +++++.=. ...+ ++|-|+ ....|++++.+ ..|.+++++++... +..+++.|
T Consensus 1 ~ia~~~~~~~~g~~~~~i~~~~~~~-~a~~--~~l~f~------~~~k~~~~l~~-~~a~aviv~~~~~~~~~~~~~~~v 70 (324)
T TIGR01853 1 ELAERLGAELKGNGDIVITGVAPLE-KAKA--NHITFL------ANPKYLKHLKS-SQAGAVIVSPDDQGLPAKCAALVV 70 (324)
T ss_pred ChhHHhCCEEeCCCCceEEcccChh-hCCC--CeEEEE------eCHHHHHHHhh-cCCcEEEecchhhcccCcceEEEE
Confidence 578888888776443 44443322 3466 888666 23568988777 88999999776432 24568889
Q ss_pred cCCCCccHHHHHHHHHHHH
Q 011395 107 EGNGNVNTLNSLVNMACYA 125 (487)
Q Consensus 107 ~~~~~~d~~~aL~~la~~~ 125 (487)
+ |++.++.++.+++
T Consensus 71 ~-----~p~~~~~~~~~~~ 84 (324)
T TIGR01853 71 K-----DPYLAFAKVAELF 84 (324)
T ss_pred C-----CHHHHHHHHHHHh
Confidence 9 9999999999855
No 79
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=81.19 E-value=1.5 Score=43.07 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..-+|||+|.+ ||||++.+|..+|+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35689999987 79999999999995
No 80
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=81.02 E-value=5.9 Score=34.04 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=41.9
Q ss_pred EeCC-CChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcc-------hHHhhccccC
Q 011395 137 VTGS-VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKG-------EILELARMAR 208 (487)
Q Consensus 137 VTGT-nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g-------~i~~~~~~~~ 208 (487)
|||+ .|||+++.-+...|++.|.++....-. ..+|+.++|-. ++.. ...++...+.
T Consensus 5 ~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~---------------~~~d~vliEGa-Gg~~~p~~~~~~~~d~~~~~~ 68 (134)
T cd03109 5 GTGTDIGKTVATAILARALKEKGYRVAPLKPV---------------QTYDFVLVEGA-GGLCVPLKEDFTNADVAKELN 68 (134)
T ss_pred eCCCCcCHHHHHHHHHHHHHHCCCeEEEEecC---------------CCCCEEEEECC-CccccCCCCCCCHHHHHHHhC
Confidence 4443 799999999999998899988632111 01689999973 1221 2223333346
Q ss_pred CcEEEEcCCCh
Q 011395 209 PEIRVVLNVGD 219 (487)
Q Consensus 209 pdvaViTNI~~ 219 (487)
..+.++++...
T Consensus 69 ~~vllV~~~~~ 79 (134)
T cd03109 69 LPAILVTSAGL 79 (134)
T ss_pred CCEEEEEcCCC
Confidence 66777776553
No 81
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=80.87 E-value=1.8 Score=41.91 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
+|||||+. ||||++.-+.++|++.|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 58999985 79999999999997665443
No 82
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=79.90 E-value=16 Score=29.28 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=34.7
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCC
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMS 195 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~ 195 (487)
+++--|-.||||++..++..|.+.|.++..--. +...|+.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~---------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL---------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC---------------CCCCCEEEEeCcCC
Confidence 456678899999999999999777777653221 12278999999754
No 83
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=79.65 E-value=27 Score=36.41 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=66.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHccccCCcEEEE--EcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE---ECccHHHHH
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVI--LGDMLELGSTERESHEKILSYCCDACIDLIGL---VGDRFRAAA 433 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~V--lg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~---~g~~~~~i~ 433 (487)
..++|=..+++.+.+..+++.+-.-+ .-+.|+| ||++. +.+...+.+.+.+.+.+.+.-++ .|.+..+-.
T Consensus 319 ANFlD~GG~a~~~~v~~a~~ii~~d~-~vk~iliNIfGGI~----~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~ 393 (422)
T PLN00124 319 ANFLDVGGNASEQQVVEAFKILTSDD-KVKAILVNIFGGIM----KCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGK 393 (422)
T ss_pred ceeeecCCCCCHHHHHHHHHHHhcCC-CCcEEEEEecCCcc----chHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHH
Confidence 44555556778999999999886644 3456666 87653 34566677888777765553333 377777766
Q ss_pred HHhhhhcCCeEEEECCHHHHHHHHHhhC
Q 011395 434 ENMNLIKTDYIVVTNDAEILSQKIVKRL 461 (487)
Q Consensus 434 ~~~~~~~~~~~~~~~d~~~ai~~l~~~~ 461 (487)
+.+++.+ .++..++|.++|++.+.+.+
T Consensus 394 ~~l~~~~-~~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 394 RILKESG-MTLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred HHHHhCC-CCeEEcCCHHHHHHHHHHHh
Confidence 6665543 35788999999999987653
No 84
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=79.44 E-value=6.3 Score=41.20 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|.++|- .|||||+.-|+..|++.|++|.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~ 127 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVG 127 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 345666654 4899999999999988888875
No 85
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=78.62 E-value=25 Score=30.76 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=22.2
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|++.|. .||||+...+...|.+.+.++.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ 31 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVA 31 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 455554 5899999999999988888763
No 86
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.53 E-value=8.7 Score=39.51 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=53.5
Q ss_pred EEEeCCCChHhHHHHHHHHHHh----CCCceEe-cCCCCCCcchhhhHhhcC--CCCCcEEEEeccCCCcchHHh-hccc
Q 011395 135 VGVTGSVGKSTTKSMIALALES----LGVNVFQ-SYGNWNNRVGVALSLIGI--DRAVDIAVLEMGMSGKGEILE-LARM 206 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~----~g~~v~~-t~g~~n~~~g~p~~l~~~--~~~~~~~V~E~g~~~~g~i~~-~~~~ 206 (487)
+|.|| .|||||..-|+..|.. .|.+|.. +...| +++....+... .-+.++.+.+. ..++.. +...
T Consensus 180 vGptG-vGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~--R~aa~eQL~~~a~~lgvpv~~~~~----~~~l~~~L~~~ 252 (388)
T PRK12723 180 VGPTG-VGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY--RIGAKKQIQTYGDIMGIPVKAIES----FKDLKEEITQS 252 (388)
T ss_pred ECCCC-CCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc--cHHHHHHHHHHhhcCCcceEeeCc----HHHHHHHHHHh
Confidence 44454 3899999999988853 3556642 23332 23322111111 12344444443 112222 2223
Q ss_pred cCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccC-CC-CCeEEEcCCc
Q 011395 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES-KL-GDVCVLNADD 254 (487)
Q Consensus 207 ~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~-~~-~~~~vln~Dd 254 (487)
-..|+.+|=..|..|- +...+.+.+. +++.. ++ .-.+|+++..
T Consensus 253 ~~~DlVLIDTaGr~~~----~~~~l~el~~-~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK----DFMKLAEMKE-LLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred CCCCEEEEcCCCCCcc----CHHHHHHHHH-HHHhcCCCCeEEEEEcCCC
Confidence 3679999988888773 3333333322 22222 22 4567887754
No 87
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=78.39 E-value=2 Score=39.76 Aligned_cols=28 Identities=46% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+||-||+ |||||..=|++-++..+.+|.
T Consensus 6 lvGptGv-GKTTt~aKLAa~~~~~~~~v~ 33 (196)
T PF00448_consen 6 LVGPTGV-GKTTTIAKLAARLKLKGKKVA 33 (196)
T ss_dssp EEESTTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred EECCCCC-chHhHHHHHHHHHhhccccce
Confidence 4666664 999999999999987887774
No 88
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=77.96 E-value=2 Score=37.61 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..|-|-||||- ||||+++.|+..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 36789999995 7999999999887
No 89
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=77.72 E-value=2.4 Score=39.41 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=22.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+||+||. .||||++.+++. + |+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~---G~~vi 30 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L---GFPVI 30 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c---CCeEE
Confidence 468999997 789999988887 5 77775
No 90
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=77.59 E-value=5.2 Score=37.81 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=25.8
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCc
Q 011395 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (487)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (487)
..+..+|||+|-+ ||||.+..|...|+..+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 4456799999986 5999999999999765543
No 91
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.49 E-value=15 Score=37.30 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=22.8
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
||+-|+ |||||+.=++..++..|+++.
T Consensus 107 VGLqG~-GKTTtc~KlA~y~kkkG~K~~ 133 (483)
T KOG0780|consen 107 VGLQGS-GKTTTCTKLAYYYKKKGYKVA 133 (483)
T ss_pred EeccCC-CcceeHHHHHHHHHhcCCcee
Confidence 455554 799999999999999999984
No 92
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=77.08 E-value=3.2 Score=40.37 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=25.2
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|+ |=.|||||+.-|+..|.+.|++|.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVl 33 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKIL 33 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 466666 456899999999999988999985
No 93
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.00 E-value=8.7 Score=39.63 Aligned_cols=108 Identities=22% Similarity=0.298 Sum_probs=58.2
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHh---hcCCCCCcEEEEeccCC-CcchHHh----hccc
Q 011395 135 VGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSL---IGIDRAVDIAVLEMGMS-GKGEILE----LARM 206 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l---~~~~~~~~~~V~E~g~~-~~g~i~~----~~~~ 206 (487)
+|.-| .|||||+.=|+..|+..+++|.-..-. +--|..+ -.+....++-++..+.+ .+-++.+ ...-
T Consensus 106 vGLQG-sGKTTt~~KLA~~lkk~~~kvllVaaD----~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~ 180 (451)
T COG0541 106 VGLQG-SGKTTTAGKLAKYLKKKGKKVLLVAAD----TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE 180 (451)
T ss_pred EeccC-CChHhHHHHHHHHHHHcCCceEEEecc----cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH
Confidence 45555 499999999999999999988532211 1112111 11122333333333211 2323321 1112
Q ss_pred cCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCC-eEEEcC
Q 011395 207 ARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGD-VCVLNA 252 (487)
Q Consensus 207 ~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~-~~vln~ 252 (487)
-..|+.|+=.-|+.|+| |+..++-.+|-+-++|.. .+|+++
T Consensus 181 ~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 181 EGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred cCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 25789999888888886 444455444444445544 445544
No 94
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=76.93 E-value=3.8 Score=36.47 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+| -.||||....|...|+..|++++
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~ 33 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVA 33 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 36899999 57999999999999988888874
No 95
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=76.16 E-value=2.2 Score=42.60 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=25.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|++.|.| |||||...|+..|+..|++|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~ 146 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL 146 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE
Confidence 4577777765 799999999999988887775
No 96
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=76.10 E-value=3.8 Score=42.20 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+.++|+|+ |-.|||||+.-|+..|...|++|.
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVL 137 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVL 137 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 3456788887 667899999999999977898885
No 97
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=75.96 E-value=4 Score=39.88 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=26.2
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+| ..||||...-|...|++.| +|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~ 32 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVG 32 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEE
Confidence 46899999 8899999999999998888 763
No 98
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.73 E-value=2.9 Score=39.96 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=25.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++++.|=.||||++.-|++.|...|.+|..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 456677789999999999999999988853
No 99
>PRK14974 cell division protein FtsY; Provisional
Probab=75.72 E-value=4.1 Score=41.00 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=26.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+++|.+ |||||...++..|+..|++|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~ 172 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVV 172 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5688888876 699999999999988888875
No 100
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=75.60 E-value=25 Score=36.59 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|.++|- .|||||+.-|+..|+..|++|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 457777775 4899999999999988888875
No 101
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=75.44 E-value=14 Score=36.59 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=28.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
...++|+|+|.+ ||||+...+...|...|+++.
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~ 66 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVA 66 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 457899999964 799999999999988888874
No 102
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=75.12 E-value=4.1 Score=36.26 Aligned_cols=31 Identities=35% Similarity=0.316 Sum_probs=27.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
-.|+|||. .||||.+.-|+..|+..|+++++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 46999997 57999999999999999999864
No 103
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=74.55 E-value=4.2 Score=42.20 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=27.8
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+| -.||||..+-|-..|+..|++|.
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVa 33 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVS 33 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 46899999 78999999999999999999985
No 104
>PRK11890 phosphate acetyltransferase; Provisional
Probab=74.43 E-value=33 Score=34.12 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc----C
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK----T 441 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~----~ 441 (487)
.++.+.+++..++..++.. +++++|.+. .+.+-.+...+. .+.++-..+++|+.. .|.+...+.+ .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~--~~~vava~a------~D~~vl~Aa~~a-~~~gl~~piLvG~~~-~I~~~a~~~g~dl~~ 72 (312)
T PRK11890 3 MAHKHEKYERLIARARTLP--PLPTAVAHP------CDESSLRGAVEA-AQLGLITPILVGPRA-RIEAVAAECGLDLSG 72 (312)
T ss_pred ccccccCHHHHHHHHhcCC--CceEEEECC------CCHHHHHHHHHH-HHcCCEEEEEECCHH-HHHHHHHHcCCCcCC
Confidence 3455667777777777533 456777753 233333334333 344566778888764 3444333332 2
Q ss_pred CeEEEECCHHHHHHHHHhhCCCCCE-EEEecCCCCc
Q 011395 442 DYIVVTNDAEILSQKIVKRLKSNDV-VLVKGSRAMQ 476 (487)
Q Consensus 442 ~~~~~~~d~~~ai~~l~~~~~~~d~-vLv~GSr~~~ 476 (487)
.++...++.+++.+.+..+.+.|+. ++++|.-...
T Consensus 73 ~eII~~~~~~~~a~~av~mV~~G~AD~lmkG~i~Tt 108 (312)
T PRK11890 73 YEIVDAPHSHAAAAKAVELVREGEAEALMKGSLHTD 108 (312)
T ss_pred CEEECCCChHHHHHHHHHHHHcCCCCEEecCCcccH
Confidence 2455556778888888888877643 8899985443
No 105
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=74.42 E-value=3.9 Score=37.14 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
+|+|+|. .||||.+..|...|+..|.++
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~ 30 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP 30 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4778886 589999999999997666554
No 106
>PRK00784 cobyric acid synthase; Provisional
Probab=74.21 E-value=3.7 Score=43.70 Aligned_cols=30 Identities=30% Similarity=0.278 Sum_probs=25.9
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.|-|||| .|||+++..|...|++.|++|.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~ 35 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA 35 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence 45788887 8999999999999999988763
No 107
>PHA02518 ParA-like protein; Provisional
Probab=73.72 E-value=4.7 Score=37.17 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.6
Q ss_pred EEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+--|-.||||++..|+..|.+.|++|.
T Consensus 7 ~~KGGvGKTT~a~~la~~la~~g~~vl 33 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWLHADGHKVL 33 (211)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 344667899999999999988888885
No 108
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=73.05 E-value=3.9 Score=38.51 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 134 LVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
+|||+|.+ ||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999953
No 109
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=72.87 E-value=4.8 Score=39.12 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.4
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|. |=.|||||+--|+..|.+.|++|.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVL 33 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVM 33 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEE
Confidence 456665 456799999999999988899985
No 110
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.71 E-value=5.4 Score=39.68 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=28.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEecC
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSY 165 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~t~ 165 (487)
+.+|.+.|.| |||||..=|++.|++.|++|.-..
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA 174 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAA 174 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEe
Confidence 5577777776 699999999999999999986433
No 111
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=72.42 E-value=7.3 Score=38.80 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=30.1
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+.+.|||.| .|-.|||.++.+|+..|++.|++++.
T Consensus 25 ~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~I 63 (311)
T TIGR00682 25 RAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGV 63 (311)
T ss_pred cCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEE
Confidence 456788887 48899999999999999999999854
No 112
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=72.41 E-value=63 Score=27.87 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=57.7
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHH
Q 011395 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (487)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~ 410 (487)
+|++++.++..+..+ ..+ .+.-...++...++..++.+++....+ ..+++|+....+ +....+.
T Consensus 41 vp~e~i~~~a~~~~~-----d~V-------~lS~~~~~~~~~~~~~~~~L~~~~~~~-~~i~vGG~~~~~---~~~~~~~ 104 (137)
T PRK02261 41 TSQEEFIDAAIETDA-----DAI-------LVSSLYGHGEIDCRGLREKCIEAGLGD-ILLYVGGNLVVG---KHDFEEV 104 (137)
T ss_pred CCHHHHHHHHHHcCC-----CEE-------EEcCccccCHHHHHHHHHHHHhcCCCC-CeEEEECCCCCC---ccChHHH
Confidence 688999988877664 222 222223567888888999998764233 445555322122 2233444
Q ss_pred HHHHHHcCCCEEEEECccHHHHHHHhhh
Q 011395 411 LSYCCDACIDLIGLVGDRFRAAAENMNL 438 (487)
Q Consensus 411 ~~~l~~~~~d~vi~~g~~~~~i~~~~~~ 438 (487)
-+.+.++++|.|+--|....++.+.+++
T Consensus 105 ~~~l~~~G~~~vf~~~~~~~~i~~~l~~ 132 (137)
T PRK02261 105 EKKFKEMGFDRVFPPGTDPEEAIDDLKK 132 (137)
T ss_pred HHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 4556677899998888888887777654
No 113
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=72.25 E-value=4.7 Score=35.71 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|+|. .||||+...|...|+..|++|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~ 31 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVA 31 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3566664 5899999999999988898885
No 114
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=72.12 E-value=4.3 Score=37.97 Aligned_cols=30 Identities=47% Similarity=0.614 Sum_probs=26.0
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|.|| |-.|||||+.-|...|-..|.+|.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~ 35 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVV 35 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEE
Confidence 467777 778999999999999988899985
No 115
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.08 E-value=3.2 Score=39.96 Aligned_cols=116 Identities=22% Similarity=0.278 Sum_probs=53.1
Q ss_pred CCceEEEeccccCCCCccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEec
Q 011395 85 KGCVGVIGNQVCNNWDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 85 ~Ga~~~v~~~~~~~~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
+|..+.|..+... .+|.+.-= +..+.|..+|-..|- =.-+||-||| ||||| +++++ ||+-..+
T Consensus 93 r~~~g~VlRrI~~--~IPt~eeL-----~LPevlk~la~~kRG---LviiVGaTGS-GKSTt---mAaMi---~yRN~~s 155 (375)
T COG5008 93 RGLAGLVLRRIET--KIPTFEEL-----KLPEVLKDLALAKRG---LVIIVGATGS-GKSTT---MAAMI---GYRNKNS 155 (375)
T ss_pred cCcchhhhhhhhc--cCCcHHhc-----CCcHHHHHhhcccCc---eEEEECCCCC-Cchhh---HHHHh---cccccCC
Confidence 7877777665322 34443222 334566667753222 1345666775 88887 34555 3432222
Q ss_pred CCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccc--cCCcEEEEcCCC
Q 011395 165 YGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARM--ARPEIRVVLNVG 218 (487)
Q Consensus 165 ~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~--~~pdvaViTNI~ 218 (487)
.|.. -.+-.|.....-..+|=+-==|+|.....-...+-+- -.||+.+|--|.
T Consensus 156 ~gHI-iTIEDPIEfih~h~~CIvTQREvGvDTesw~~AlkNtlRQapDvI~IGEvR 210 (375)
T COG5008 156 TGHI-ITIEDPIEFIHKHKRCIVTQREVGVDTESWEVALKNTLRQAPDVILIGEVR 210 (375)
T ss_pred CCce-EEecChHHHHhcccceeEEeeeeccchHHHHHHHHHHHhcCCCeEEEeecc
Confidence 2221 1123455444334444444456654322100111111 146777666653
No 116
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=71.81 E-value=6 Score=38.60 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.++|+++|.+ |||||+.-|+..|...|++|.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~ 104 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 104 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35677777764 799999999999988888874
No 117
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=71.78 E-value=5.3 Score=37.89 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=24.8
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|++ -.||||++.-|+..|.+.|++|.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vl 34 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVL 34 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 5677755 67999999999999977888875
No 118
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.07 E-value=10 Score=42.25 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=21.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hCC-Cce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~-~~g-~~v 161 (487)
..+|++.|.| |||||...|+..+. ..| .+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV 218 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQL 218 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeE
Confidence 3577777766 69999999998773 444 355
No 119
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=70.85 E-value=29 Score=33.73 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=73.8
Q ss_pred ceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc
Q 011395 349 RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (487)
Q Consensus 349 R~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~ 428 (487)
..+.+..++ ..+=.| .+|+=++.+++.-+++.- +-..+. -...+.-..+.+++.++.+|.+++||.+
T Consensus 98 ~~~~F~~PG-kVLHlD---GD~~YL~~Cl~~Ykql~i--~a~G~~-------~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 98 KEEYFERPG-KVLHLD---GDEEYLNKCLKVYKQLGI--PAVGIH-------VPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred cccccCCCC-eEEEec---CCHHHHHHHHHHHHHcCC--ceEEEE-------echHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 344455433 344445 279999999999998762 223332 1234555678899999999999999987
Q ss_pred HHH----HHHHhhhhcCCeEEEECCHHHHHHHHHhhCC-CCCEEEEecCCCCcHHHHHH
Q 011395 429 FRA----AAENMNLIKTDYIVVTNDAEILSQKIVKRLK-SNDVVLVKGSRAMQMEKVVD 482 (487)
Q Consensus 429 ~~~----i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~-~~d~vLv~GSr~~~~e~~~~ 482 (487)
+-. =...+. .+..-...-++++.|.+.-. .+++|+|.|..-..||.|++
T Consensus 165 ~~~K~~~d~~dl~-----~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~ 218 (287)
T PF05582_consen 165 GYLKNKKDYSDLN-----NYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLE 218 (287)
T ss_pred hhhcCCCChhhhh-----hhhccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHH
Confidence 621 011111 12222234567777765543 36899999999888998875
No 120
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=70.82 E-value=3.9 Score=39.48 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=22.6
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|-.|||||+.-|++.|.+.|++|.
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVl 33 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEE
Confidence 6788999999999999988898885
No 121
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=70.55 E-value=9.1 Score=38.59 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+.+.|||.| .|-.|||-++.+|+..|++.|++++.
T Consensus 53 ~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~I 91 (338)
T PRK01906 53 RLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGV 91 (338)
T ss_pred cCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEE
Confidence 456788887 69999999999999999999999854
No 122
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=70.41 E-value=4.5 Score=37.64 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=23.4
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|+ |-.|||||+.-|++.|.+.|++|.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvL 32 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVL 32 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEE
Confidence 34444 567899999999999988888874
No 123
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=70.16 E-value=7 Score=35.35 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=26.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++++|+| -.||||...-|...|+..|++|+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg 38 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPG 38 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEE
Confidence 467999999 46899999999999977788874
No 124
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=69.85 E-value=10 Score=39.09 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred EEEeCC---CChHhHHHHHHHHHHhCCCce
Q 011395 135 VGVTGS---VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 135 I~VTGT---nGKTTT~~ml~~iL~~~g~~v 161 (487)
|.|.|| .||||++.-|-..|++.|++|
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 445554 599999999999999988776
No 125
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=69.80 E-value=26 Score=30.13 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=9.6
Q ss_pred CeEEEECCHHHHHHHH
Q 011395 442 DYIVVTNDAEILSQKI 457 (487)
Q Consensus 442 ~~~~~~~d~~~ai~~l 457 (487)
+.+.+++|.++|++-+
T Consensus 57 ~~vlvf~dL~DAlevL 72 (147)
T COG4080 57 KPVLVFPDLDDALEVL 72 (147)
T ss_pred CcEEEehhHHHHHHhc
Confidence 3466666666666554
No 126
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=69.76 E-value=8.5 Score=35.06 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=27.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceEec
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
.++|.|.|. .||||.+.+|++-|...|+++...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 357888886 489999999999998878877543
No 127
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=69.67 E-value=4.7 Score=37.74 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.5
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTG--SVGKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~ml~~iL~ 155 (487)
+..+|||+| ..||||.+..|...|.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 346899999 4699999999999994
No 128
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.41 E-value=52 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=24.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|++.|- .|||||...|+.-|...|+++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg 273 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 273 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE
Confidence 46666665 4799999999999988888875
No 129
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.21 E-value=28 Score=35.72 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.5
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.++|+++| -.|||||..-|+..+...|.+|.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~ 238 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVG 238 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 56788888 56899999999988877788774
No 130
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=68.33 E-value=4.3 Score=37.00 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=19.6
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|||||. .||||++.++.. .|+.+.
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPVI 28 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EEE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCEE
Confidence 6999997 789999988876 477764
No 131
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=68.29 E-value=5.4 Score=38.59 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=24.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCc
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (487)
..-+|||+||. ||+||+..+..+|...+-.
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 34589999994 8999999999999655543
No 132
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=67.91 E-value=5.5 Score=36.02 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=23.8
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+.-|=.||||++..|+..|...|++|.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vl 31 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVL 31 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred EEcCCCCccHHHHHHHHHhcccccccccc
Confidence 44556778999999999999988899985
No 133
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=67.90 E-value=19 Score=37.56 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=22.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH-hCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALE-SLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~-~~g~~v~ 162 (487)
.+|.++|. .|||||+.-|+..|. ..|.+|.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~ 132 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVL 132 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEE
Confidence 35555554 589999999999885 4677774
No 134
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=67.74 E-value=7.5 Score=36.82 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=24.7
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+-|||| .|||+++..|.+.|++.|++++
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~ 35 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVA 35 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4666665 7999999999999999999875
No 135
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=67.65 E-value=41 Score=36.33 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=27.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEc
Q 011395 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVILG 394 (487)
Q Consensus 360 ~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg 394 (487)
.||.+||+.|-..++.+++...+ .+|+++|+|
T Consensus 228 rVIv~tfaSni~Ri~~i~~~A~~---~gR~vvv~G 259 (555)
T COG0595 228 RVIVTTFASNIERIQTIIDAAEK---LGRKVVVTG 259 (555)
T ss_pred cEEEEEchhhHHHHHHHHHHHHH---cCCeEEEEc
Confidence 36778899999999999999987 468999986
No 136
>PRK10867 signal recognition particle protein; Provisional
Probab=67.21 E-value=45 Score=34.87 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.6
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhC-CCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESL-GVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~-g~~v~ 162 (487)
..+|.++|- .|||||+.-|+..|... |++|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~ 133 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVL 133 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEE
Confidence 456777775 47999999999988777 88874
No 137
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=67.14 E-value=7.2 Score=35.81 Aligned_cols=29 Identities=34% Similarity=0.410 Sum_probs=25.5
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-|||| .|||+++..|.+.|++.|.+++
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~ 33 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVG 33 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 5677777 6999999999999999999885
No 138
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=66.98 E-value=5.3 Score=33.12 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
+|+|+|. .||||++..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 4667775 58999999999988 5554
No 139
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=66.86 E-value=9.5 Score=38.28 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.6
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+.|||.| +|-.|||-++.+|...|++.|++++.
T Consensus 32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~I 70 (326)
T PF02606_consen 32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAI 70 (326)
T ss_pred CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEE
Confidence 456888887 78999999999999999999999853
No 140
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=66.63 E-value=44 Score=32.35 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHH----HHHHhhhhcCCeE
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRA----AAENMNLIKTDYI 444 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~----i~~~~~~~~~~~~ 444 (487)
+|+=++.+|+.-+++.- +.+.+.= ...+.-..+.+++.++.+|.+++||.++-. =...+. .+
T Consensus 113 D~~YL~~Cl~~Ykql~i--~a~G~~~-------~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~-----~Y 178 (283)
T TIGR02855 113 DPEYLRKCLKLYKKIGV--PVVGIHC-------KEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLN-----AY 178 (283)
T ss_pred CHHHHHHHHHHHHHhCC--ceEEEEe-------cchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhh-----hh
Confidence 69999999999998762 2333331 134455678889999999999999987632 011111 12
Q ss_pred EEECCHHHHHHHHHhhC-CCCCEEEEecCCCCcHHHHHHH
Q 011395 445 VVTNDAEILSQKIVKRL-KSNDVVLVKGSRAMQMEKVVDV 483 (487)
Q Consensus 445 ~~~~d~~~ai~~l~~~~-~~~d~vLv~GSr~~~~e~~~~~ 483 (487)
..-...-++++.|.+.- ..+++|+|.|..-..+|.+++.
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~A 218 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRA 218 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHc
Confidence 22333557777777665 3478999999988888888753
No 141
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=66.31 E-value=14 Score=31.46 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCcEE----EEeCCCChHhHHHHHHHHHHhCCCc
Q 011395 118 LVNMACYARNSRFSGVLV----GVTGSVGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 118 L~~la~~~~~p~~~~~vI----~VTGTnGKTTT~~ml~~iL~~~g~~ 160 (487)
+..+..+...|..+.|.| |-||| |||-+++||+.-|-..|.+
T Consensus 38 ~~ai~~~l~~~~p~KpLVlSfHG~tGt-GKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 38 VNAIKGHLANPNPRKPLVLSFHGWTGT-GKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred HHHHHHHHcCCCCCCCEEEEeecCCCC-cHHHHHHHHHHHHHhcccC
Confidence 334455444434444433 55555 8999999999998566554
No 142
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=66.30 E-value=9.3 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.++|+||| ..||||++.-|+..|.+.|++|.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVl 63 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVL 63 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3467777775 67899999999999988898885
No 143
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=65.79 E-value=7 Score=34.83 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=24.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+-.|-.||||++..|+..|.+.|++|.
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vl 32 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVV 32 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 44556788999999999999988898885
No 144
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=65.20 E-value=7.6 Score=37.20 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=21.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|||||. .||||++.++..-+ |+.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~---G~~vi 30 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH---HIEVI 30 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 57999997 78999998887644 66654
No 145
>PRK05380 pyrG CTP synthetase; Validated
Probab=64.14 E-value=14 Score=39.34 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=27.3
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~ 36 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 36 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 35688888 67999999999999999999984
No 146
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=63.89 E-value=1.3e+02 Score=30.35 Aligned_cols=144 Identities=12% Similarity=0.100 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC--CHH--HHHHHHHHHHccccCCcEEEE
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA--NPI--STRAAIDLLKDIACNGKRVVI 392 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya~--np~--s~~~~l~~l~~~~~~~~~i~V 392 (487)
-.+|-.+|..||+++..+ .+..|..=+-..++.+. ++.+.|+-+ ... |-. .+--+++++++.. .+++++|
T Consensus 19 ~~La~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~vrg~dV~ivqs-~~~p~nd~l~eLll~~~alr~~~-a~~i~~V 94 (332)
T PRK00553 19 KKLVDSICRKLSMKPGEI--VIQKFADGETYIRFDESVRNKDVVIFQS-TCSPVNDSLMELLIAIDALKRGS-AKSITAI 94 (332)
T ss_pred HHHHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCEEEEEcC-CCCCCchHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 345666777888887654 35677643333443332 234445544 432 222 2333445555544 5677888
Q ss_pred EcCCCCCCcccHH--------HHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCC
Q 011395 393 LGDMLELGSTERE--------SHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSN 464 (487)
Q Consensus 393 lg~m~e~G~~~~~--------~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~ 464 (487)
+--+.- .+.++ --+.+++.+...++|+|+++......+..-+. ..+..........+++.+....+
T Consensus 95 iPYl~Y--aRQDr~~~~~e~isak~vA~ll~~~g~d~vit~DlH~~~i~~~F~----ipv~~l~a~~~~~~~~~~~~~~~ 168 (332)
T PRK00553 95 LPYYGY--ARQDRKTAGREPITSKLVADLLTKAGVTRVTLTDIHSDQTQGFFD----IPVDILRTYHVFLSRVLELLGKK 168 (332)
T ss_pred eecccc--chhhcccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHhhcC----CCcceeechHHHHHHHHHhcCCC
Confidence 754311 11111 23457888888889999999888766554432 12323334445556665543345
Q ss_pred CEEEEecC
Q 011395 465 DVVLVKGS 472 (487)
Q Consensus 465 d~vLv~GS 472 (487)
+.+++.-.
T Consensus 169 ~~vvVsPD 176 (332)
T PRK00553 169 DLVVVSPD 176 (332)
T ss_pred CeEEEEEC
Confidence 66666533
No 147
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=63.29 E-value=6.9 Score=37.80 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=22.1
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|=.|||||+.-|++.|.+.|++|.
T Consensus 8 KGGvGKTT~a~nLA~~la~~G~rvl 32 (267)
T cd02032 8 KGGIGKSTTSSNLSVALAKRGKKVL 32 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4667999999999999988899985
No 148
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=63.27 E-value=1.1e+02 Score=27.76 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcccc--CCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE--ECccHHHHHHHhhhhcCCeEE
Q 011395 370 PISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL--VGDRFRAAAENMNLIKTDYIV 445 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~--~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~--~g~~~~~i~~~~~~~~~~~~~ 445 (487)
-++++.+++.++.... .++.+++++++.+ .......++.+.+++.++ .|++ +|.+...+.+-.+.. ..+++
T Consensus 89 ~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~---~~~~~~~~~~~~l~~~~I-~v~~IgiG~~~~~L~~ia~~t-gG~~~ 163 (183)
T cd01453 89 QNGLEMALESLKHMPSHGSREVLIIFSSLST---CDPGNIYETIDKLKKENI-RVSVIGLSAEMHICKEICKAT-NGTYK 163 (183)
T ss_pred HHHHHHHHHHHhcCCccCceEEEEEEcCCCc---CChhhHHHHHHHHHHcCc-EEEEEEechHHHHHHHHHHHh-CCeeE
Confidence 4678888888864321 2335556654221 112223456666766544 3433 465544333333333 23566
Q ss_pred EECCHHHHHHHHHhhCCC
Q 011395 446 VTNDAEILSQKIVKRLKS 463 (487)
Q Consensus 446 ~~~d~~~ai~~l~~~~~~ 463 (487)
...|.++.-+.+.+...|
T Consensus 164 ~~~~~~~l~~~~~~~~~p 181 (183)
T cd01453 164 VILDETHLKELLLEHVTP 181 (183)
T ss_pred eeCCHHHHHHHHHhcCCC
Confidence 677777666655554444
No 149
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=63.16 E-value=9.8 Score=36.30 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=24.5
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|++ -.||||++..|+..|.+.|++|.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vl 34 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEE
Confidence 4666765 67899999999999977888875
No 150
>PRK11670 antiporter inner membrane protein; Provisional
Probab=62.45 E-value=10 Score=38.73 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=27.3
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.++|+|+ |-.|||||+.-|+..|.+.|++|.-
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL 141 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI 141 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4788887 5678999999999999888999863
No 151
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=62.32 E-value=5.2 Score=36.51 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCcEEEEeCCCCh--HhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGSVGK--STTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTnGK--TTT~~ml~~iL~~~g~~v~ 162 (487)
.+.|+|+||||.|- |||+.-...|++....+..
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa 37 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAA 37 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccHh
Confidence 45789999999875 5566677788876665543
No 152
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=62.31 E-value=6.7 Score=37.90 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=22.0
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|=.|||||+.-|+..|-+.|++|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVL 32 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVL 32 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEE
Confidence 5778999999999999988899885
No 153
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.16 E-value=8.9 Score=40.35 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=25.9
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~ 162 (487)
++.|-||||. |||+++..|...|++.|++|.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~ 36 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQ 36 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcc
Confidence 4567888775 599999999999999998763
No 154
>PRK00889 adenylylsulfate kinase; Provisional
Probab=62.09 E-value=13 Score=33.31 Aligned_cols=32 Identities=38% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+|.++|. .||||++..|+..|...|.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~ 36 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVE 36 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3568899985 5899999999999976665553
No 155
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=61.53 E-value=11 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.5
Q ss_pred CChHhHHHHHHHHHHhCCCceE
Q 011395 141 VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|||+++..|.+.|++.|+++.
T Consensus 11 ~GKT~vs~~L~~~l~~~g~~v~ 32 (222)
T PRK00090 11 VGKTVVTAALAQALREAGYSVA 32 (222)
T ss_pred cCHHHHHHHHHHHHHHcCCceE
Confidence 7999999999999999999875
No 156
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=61.42 E-value=56 Score=28.84 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHH-HHhhhhcCCeEEEECCHHHHHHHHHhhCCC--
Q 011395 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAA-ENMNLIKTDYIVVTNDAEILSQKIVKRLKS-- 463 (487)
Q Consensus 387 ~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~-~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~-- 463 (487)
+|.+.|+|... .+++..+...+++.+.+. .++.|++....+. +++. ..+-...++-.++..---+
T Consensus 36 krPLlivGp~~----~dee~~E~~vKi~ekfni-pivaTa~~~~~~~~~~i~-------~~~~~lh~it~~l~Dp~w~G~ 103 (170)
T COG1880 36 KRPLLIVGPLA----LDEELLELAVKIIEKFNI-PIVATASSMGNLIGRGIG-------SEYINLHAITQYLTDPNWPGF 103 (170)
T ss_pred CCceEEecccc----cCHHHHHHHHHHHHhcCC-ceEecchhhcchhhcccc-------cchhHHHHHHHHhcCCCCCCc
Confidence 57788888522 245666666677766543 4667776655433 3221 1123456666665542222
Q ss_pred -----CCEEEEecCCCCcHHHHHHHHHh
Q 011395 464 -----NDVVLVKGSRAMQMEKVVDVIKA 486 (487)
Q Consensus 464 -----~d~vLv~GSr~~~~e~~~~~l~~ 486 (487)
-|+|++.|++-....+++..|++
T Consensus 104 dg~g~yDlviflG~~~yy~sq~Ls~lKh 131 (170)
T COG1880 104 DGNGNYDLVIFLGSIYYYLSQVLSGLKH 131 (170)
T ss_pred CCCCCcceEEEEeccHHHHHHHHHHhhh
Confidence 38999999999999999988864
No 157
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=61.38 E-value=7.3 Score=38.38 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=22.2
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|-.|||||+.-|+..|.+.|++|.
T Consensus 8 KGGVGKTTta~nLA~~La~~G~rVL 32 (290)
T CHL00072 8 KGGIGKSTTSCNISIALARRGKKVL 32 (290)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 4678999999999999988999985
No 158
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=60.77 E-value=9.2 Score=35.68 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=31.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceEecCCCCCCcch
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g 173 (487)
...|.|-|- .||||.+.+|+..|++.|++|..|.-...+.+|
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ig 46 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIG 46 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHH
Confidence 356777775 689999999999999999988765433224444
No 159
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=60.74 E-value=7.2 Score=38.30 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.4
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCC
Q 011395 133 VLVGVTGSVGKSTTKSMIALALESLGV 159 (487)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~ 159 (487)
-+.|=+|| ||||++..++..|...|+
T Consensus 62 ll~G~pGT-GKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 62 SFTGNPGT-GKTTVALRMAQILHRLGY 87 (284)
T ss_pred EEEcCCCC-CHHHHHHHHHHHHHHcCC
Confidence 35688888 999999999999976554
No 160
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=60.65 E-value=7.2 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=25.0
Q ss_pred CChHhHHHHHHHHHHhCCCceEecCCCCCCcch
Q 011395 141 VGKSTTKSMIALALESLGVNVFQSYGNWNNRVG 173 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g 173 (487)
.||||.+.+|+.-|+..|+++..+.....+.+|
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g 39 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVIITFPPGSTPIG 39 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHH
T ss_pred CCHHHHHHHHHHHHHHcCCcccccCCCCCChHH
Confidence 599999999999999999886554444344444
No 161
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.52 E-value=1e+02 Score=30.85 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEE--EcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCe
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVI--LGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDY 443 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~V--lg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~ 443 (487)
...+|+.++..++.++++. ..+.+.| +..+ ......+..+.+.+.++..|++.+..|.. .+.+++.+-+-
T Consensus 35 ~~~~~e~l~~~i~~~~~l~-tdkPfGVnl~~~~------~~~~~~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v 106 (320)
T cd04743 35 ALMRGEQVKALLEETAELL-GDKPWGVGILGFV------DTELRAAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGIST 106 (320)
T ss_pred CCCCHHHHHHHHHHHHHhc-cCCCeEEEEeccC------CCcchHHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEE
Confidence 4567999999998888752 1233333 2211 11122345566666778888888877776 46776665333
Q ss_pred EEEECCHHHHHHHHHhhCCCCCEEEEecC
Q 011395 444 IVVTNDAEILSQKIVKRLKSNDVVLVKGS 472 (487)
Q Consensus 444 ~~~~~d~~~ai~~l~~~~~~~d~vLv~GS 472 (487)
+....+.++|...... .=|.|++.|.
T Consensus 107 ~~~v~s~~~A~~a~~~---GaD~vVaqG~ 132 (320)
T cd04743 107 YLHVPSPGLLKQFLEN---GARKFIFEGR 132 (320)
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEEecC
Confidence 4557888888554321 2388888876
No 162
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=58.98 E-value=9.2 Score=36.30 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|+ |=.|||||+..|+..|.+.|++|.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vl 34 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVA 34 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 456665 556899999999999988888875
No 163
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=58.86 E-value=12 Score=40.83 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+++|+|+| -.||||..+-|-..|++.|++|.
T Consensus 8 ~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVa 42 (597)
T PRK14491 8 LSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLA 42 (597)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 3478999999 67999999999999988999984
No 164
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=58.85 E-value=8.3 Score=37.56 Aligned_cols=30 Identities=40% Similarity=0.405 Sum_probs=24.5
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|+ |=.|||||+.-|+..|-+.|++|.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVL 33 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVL 33 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 455555 557899999999999989999884
No 165
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.48 E-value=21 Score=40.15 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHH--HhhcCCCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCceEe
Q 011395 115 LNSLVNMACY--ARNSRFSGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 115 ~~aL~~la~~--~~~p~~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.+++..|... +..+....++|+||++. ||||++.-|+..|...|.+|.-
T Consensus 512 ~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLl 565 (726)
T PRK09841 512 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 565 (726)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 4555555541 21224467899999976 9999999999999888888753
No 166
>PRK03846 adenylylsulfate kinase; Provisional
Probab=58.37 E-value=17 Score=33.33 Aligned_cols=32 Identities=41% Similarity=0.562 Sum_probs=25.8
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCce
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v 161 (487)
.+..+|+++| -.||||....|...|...|..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 3467999999 7899999999999886555544
No 167
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=58.28 E-value=61 Score=31.64 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEECccHH-----HHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHH
Q 011395 405 ESHEKILSYCCDACIDLIGLVGDRFR-----AAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEK 479 (487)
Q Consensus 405 ~~~~~~~~~l~~~~~d~vi~~g~~~~-----~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~ 479 (487)
+.+++++....+. +|++|++|+++. .+.+.++....+-+.-..+.++|--.+..+-..-|-||+.+..-..+.+
T Consensus 106 ke~EefA~~~~~~-~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~vA~eTLE~GaDgVll~~~d~~eIk~ 184 (376)
T COG1465 106 KEDEEFAAERAKV-ADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARVALETLEKGADGVLLDSDDPEEIKK 184 (376)
T ss_pred ccchHHHHhhccc-cceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHHHHHHHhccCceEEeCCCCHHHHHH
Confidence 3456666666665 799999999874 4555554221222344677887755543333344889998875555665
Q ss_pred HHHHH
Q 011395 480 VVDVI 484 (487)
Q Consensus 480 ~~~~l 484 (487)
+.+.+
T Consensus 185 ~~~~~ 189 (376)
T COG1465 185 TAEVV 189 (376)
T ss_pred HHHHH
Confidence 55544
No 168
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=58.14 E-value=9.6 Score=36.85 Aligned_cols=30 Identities=40% Similarity=0.655 Sum_probs=24.1
Q ss_pred cEEEE--eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~V--TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+| -|-.|||||+.-|++.|-+.|++|.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVL 34 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVL 34 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 34444 4677999999999999988898885
No 169
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=57.81 E-value=16 Score=33.02 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=24.6
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+|+|.|. .||||.+..|+..|...|+++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5677774 58999999999999888888753
No 170
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=57.79 E-value=15 Score=34.84 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=22.8
Q ss_pred EEEEeC--CCChHhHHHH-HHHHHHhCCCceEe
Q 011395 134 LVGVTG--SVGKSTTKSM-IALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTG--TnGKTTT~~m-l~~iL~~~g~~v~~ 163 (487)
.|+||| -.||||.+.+ +..++.+.|++|..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLv 34 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 578886 5899999999 77777555577753
No 171
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=57.60 E-value=12 Score=31.31 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.5
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|..||||++..+++.|.+.+.++.
T Consensus 7 kgG~GKTt~a~~la~~l~~~g~~V~ 31 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEKGKPVL 31 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3678999999999999988888875
No 172
>PRK08233 hypothetical protein; Provisional
Probab=57.29 E-value=9.6 Score=34.10 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|+|+|. .||||.+..|+..|
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899887 58999999999988
No 173
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=57.23 E-value=17 Score=35.97 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=73.9
Q ss_pred cchHHhhhcCCceEEEeccc-cC-C---------CCccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCC---C
Q 011395 76 EFISPELYGKGCVGVIGNQV-CN-N---------WDKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGS---V 141 (487)
Q Consensus 76 ~~~~~A~~~~Ga~~~v~~~~-~~-~---------~~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGT---n 141 (487)
..+.+|++ +|-..+=.=+. .. + .++.++-|. .+...+ .++.-..+ ..+.++|.+-|| .
T Consensus 53 ~~i~~Ai~-~Gl~IvsGLH~~L~ddpel~~~A~~~g~~i~DvR-----~p~~~~-~~~~g~~~-~~~~~rv~~vGTDcav 124 (301)
T PF07755_consen 53 PVILEAIE-AGLDIVSGLHDFLSDDPELAAAAKKNGVRIIDVR-----KPPKDL-PVASGRIR-EVKAKRVLTVGTDCAV 124 (301)
T ss_dssp HHHHHHHH-TT-EEEE-SSS-HCCHHHHHCCHHCCT--EEETT-----S--SS------SGGG-G-SSEEEEEEESSSSS
T ss_pred HHHHHHHH-cCCCEEecChhhhccCHHHHHHHHHcCCeEeecc-----CCCccc-ccccCccc-cCCCCEEEEEccCccc
Confidence 56788999 99755442121 11 0 156677666 553333 34431111 235788888887 5
Q ss_pred ChHhHHHHHHHHHHhCCCceEe--cC--CCCCCcchhhhH--------------hhcCCCCCcEEEEec--cCCCcc---
Q 011395 142 GKSTTKSMIALALESLGVNVFQ--SY--GNWNNRVGVALS--------------LIGIDRAVDIAVLEM--GMSGKG--- 198 (487)
Q Consensus 142 GKTTT~~ml~~iL~~~g~~v~~--t~--g~~n~~~g~p~~--------------l~~~~~~~~~~V~E~--g~~~~g--- 198 (487)
||-||+.+|...|++.|+++.. |. |-.....|+|+. +.+..++.|+.++|- +..|+.
T Consensus 125 GK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~~~d~ivVEGQgsL~hPay~g 204 (301)
T PF07755_consen 125 GKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAEEHDWIVVEGQGSLSHPAYSG 204 (301)
T ss_dssp SHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCCC-SEEEEE--S-TTSTTTHH
T ss_pred cHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCcCCCEEEEeccccccCccccc
Confidence 9999999999999999999742 21 111122233321 122232449999996 333332
Q ss_pred -hHHhhccccCCcEEEEcC-CChhhhhcC-----CCHHHHHHHHHhhcc
Q 011395 199 -EILELARMARPEIRVVLN-VGDSHLESL-----GSLEDVARAKGEIFQ 240 (487)
Q Consensus 199 -~i~~~~~~~~pdvaViTN-I~~dHl~~~-----gs~e~~~~aK~~i~~ 240 (487)
.+. +....+||..|+.- -++-|++.| .++++..+.-..+..
T Consensus 205 vsl~-lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 205 VSLG-LLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp CHHH-HHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred cchh-hhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 111 11224899777653 456666655 456666665555543
No 174
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=56.73 E-value=23 Score=31.90 Aligned_cols=32 Identities=41% Similarity=0.540 Sum_probs=26.3
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCce
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v 161 (487)
....+|.++| -.||||....|...|...|..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~ 49 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRV 49 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3467999999 8899999999999996666543
No 175
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=56.67 E-value=10 Score=37.39 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.4
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|-.|||||+..|++.|.+.|+||.
T Consensus 8 KGGvGKTT~a~nLA~~La~~g~rVL 32 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMMAEMGKRVL 32 (296)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5678999999999999988999985
No 176
>PRK05480 uridine/cytidine kinase; Provisional
Probab=56.52 E-value=12 Score=34.68 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999997 58999999999988
No 177
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=56.42 E-value=15 Score=32.01 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=22.9
Q ss_pred EEEEeC---CCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTG---SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|+| ..||||++..++..|.+.+.+|.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vl 33 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVL 33 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 556655 67999999999999988887764
No 178
>PRK10037 cell division protein; Provisional
Probab=56.37 E-value=11 Score=36.16 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=24.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|. |=.|||||+.-|+..|.+.|++|.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVL 34 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVL 34 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEE
Confidence 456665 556899999999999988898885
No 179
>PLN02924 thymidylate kinase
Probab=55.98 E-value=19 Score=33.86 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
......|.|.|- .||||-+.+|+..|+..|+++.
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 444678999985 6899999999999998888864
No 180
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=55.93 E-value=11 Score=39.89 Aligned_cols=25 Identities=36% Similarity=0.313 Sum_probs=21.9
Q ss_pred eCC-CChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGS-VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGT-nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|+| .|||+++..|..+|++.|++|.
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~G~~v~ 31 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARRGYRVA 31 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 444 7999999999999999999874
No 181
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.92 E-value=2e+02 Score=28.79 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecC---CCCHHHHHHHHHHHHccccCCcEEEEEc
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAY---NANPISTRAAIDLLKDIACNGKRVVILG 394 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsy---a~np~s~~~~l~~l~~~~~~~~~i~Vlg 394 (487)
-.|-.+|..||++...+ .+..|..=+-..++... +..+.||-..+ |.+.-.+--+++++++.. .+|+++|+-
T Consensus 17 ~La~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~-a~~i~~ViP 93 (319)
T PRK04923 17 PLAQSICKELGVRMGKA--LVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRAS-AASVTAVIP 93 (319)
T ss_pred HHHHHHHHHhCCceeee--EEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC-CcEEEEEee
Confidence 35666677788887655 35667642333333222 23444554422 222233344445555554 467778875
Q ss_pred CCCCCCcccHH--------HHHHHHHHHHHcCCCEEEEECccHHHHHH
Q 011395 395 DMLELGSTERE--------SHEKILSYCCDACIDLIGLVGDRFRAAAE 434 (487)
Q Consensus 395 ~m~e~G~~~~~--------~~~~~~~~l~~~~~d~vi~~g~~~~~i~~ 434 (487)
-|.-. ..++. --+.+++.+...++|+|+++......+..
T Consensus 94 Yl~Ya-RQDr~~~~~~~~isak~va~ll~~~g~d~vitvD~H~~~~~~ 140 (319)
T PRK04923 94 YFGYS-RQDRRMRSSRVPITAKVAAKMISAMGADRVLTVDLHADQIQG 140 (319)
T ss_pred ccccc-cccccccCCCCCccHHHHHHHHHhcCCCEEEEEeCChHHHHh
Confidence 43211 00111 13457888888889999999777654443
No 182
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=55.56 E-value=19 Score=31.92 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=25.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+|-+||. .||||.+..|..-|++.|.++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~ 35 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYL 35 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 357888886 47999999999999999988864
No 183
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=55.28 E-value=10 Score=34.79 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.1
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+|||+|- .||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4788885 58999999999999
No 184
>PRK14709 hypothetical protein; Provisional
Probab=55.18 E-value=21 Score=37.80 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=27.7
Q ss_pred CccHHHHHHHHHHHHhhcCCCCcE-EEE--eCCCChHhHHHHHHHHH
Q 011395 111 NVNTLNSLVNMACYARNSRFSGVL-VGV--TGSVGKSTTKSMIALAL 154 (487)
Q Consensus 111 ~~d~~~aL~~la~~~~~p~~~~~v-I~V--TGTnGKTTT~~ml~~iL 154 (487)
+.+....|+++..+.-.+..+... +-+ +|.|||||..++|..+|
T Consensus 183 D~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~ll 229 (469)
T PRK14709 183 DDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGIL 229 (469)
T ss_pred CHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHH
Confidence 335667776655432222332222 222 68899999999999999
No 185
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=55.02 E-value=15 Score=38.65 Aligned_cols=84 Identities=23% Similarity=0.223 Sum_probs=49.0
Q ss_pred EEEeCC-CChHhHHHHHHHHHHhCCCceEec-CCC-CCC-c-----chhh---------------hHhhcCCCCCcEEEE
Q 011395 135 VGVTGS-VGKSTTKSMIALALESLGVNVFQS-YGN-WNN-R-----VGVA---------------LSLIGIDRAVDIAVL 190 (487)
Q Consensus 135 I~VTGT-nGKTTT~~ml~~iL~~~g~~v~~t-~g~-~n~-~-----~g~p---------------~~l~~~~~~~~~~V~ 190 (487)
|.=|+| .|||+++..|...|++.|++|... +|- +.. . .|.| ..+.++..++|++|+
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~~g~~~~~ld~~~~~~~~i~~~~~~~~~~~D~viV 83 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQATGRPSRNLDSFFMSEAQIQECFHRHSKGTDYSII 83 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHHhCCchhhCCcccCCHHHHHHHHHHhcccCCEEEE
Confidence 333455 799999999999999999987421 121 000 0 0111 011123567899999
Q ss_pred eccCCCc---------chHHhhccccCCcEEEEcCCC
Q 011395 191 EMGMSGK---------GEILELARMARPEIRVVLNVG 218 (487)
Q Consensus 191 E~g~~~~---------g~i~~~~~~~~pdvaViTNI~ 218 (487)
|-.++-. +...++++.+..-+.++++..
T Consensus 84 EGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 84 EGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred ecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 9532111 223455555677788888765
No 186
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=54.74 E-value=10 Score=36.96 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhCC
Q 011395 134 LVGVTGSV--GKSTTKSMIALALESLG 158 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (487)
+|||+|.+ ||||.+.+|..+|...+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 47888875 79999999999995443
No 187
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=54.64 E-value=9.4 Score=34.99 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.0
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 011395 134 LVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL 154 (487)
+|+|+| ..||||.+..|+..|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 478888 469999999999987
No 188
>PRK07933 thymidylate kinase; Validated
Probab=54.56 E-value=19 Score=33.59 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=25.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEec
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
+|+|-|. .||||.+.+|+..|++.|++|..+
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~ 34 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATL 34 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4566663 589999999999999999888643
No 189
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=54.52 E-value=12 Score=33.28 Aligned_cols=23 Identities=35% Similarity=0.315 Sum_probs=21.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (487)
.++|+|+| |.||||.++-|+.++
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~f 32 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIF 32 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHh
Confidence 57899999 789999999999999
No 190
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.35 E-value=76 Score=27.36 Aligned_cols=92 Identities=7% Similarity=0.054 Sum_probs=57.8
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHH
Q 011395 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (487)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~ 410 (487)
++++++.++..+..+ ..+.. .--..++...|+...+.+++.. -+...+++|+.. .-..+..++.
T Consensus 39 v~~e~~v~aa~~~~a-----diVgl-------S~l~~~~~~~~~~~~~~l~~~g-l~~~~vivGG~~---vi~~~d~~~~ 102 (134)
T TIGR01501 39 SPQEEFIKAAIETKA-----DAILV-------SSLYGHGEIDCKGLRQKCDEAG-LEGILLYVGGNL---VVGKQDFPDV 102 (134)
T ss_pred CCHHHHHHHHHHcCC-----CEEEE-------ecccccCHHHHHHHHHHHHHCC-CCCCEEEecCCc---CcChhhhHHH
Confidence 578888887766554 23322 1112467888999999998755 233456676421 1233444444
Q ss_pred HHHHHHcCCCEEEEECccHHHHHHHhhh
Q 011395 411 LSYCCDACIDLIGLVGDRFRAAAENMNL 438 (487)
Q Consensus 411 ~~~l~~~~~d~vi~~g~~~~~i~~~~~~ 438 (487)
-+.+.+.++|.++--|..+.++.+.++.
T Consensus 103 ~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 103 EKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 4556677899999888888887776643
No 191
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=54.35 E-value=2e+02 Score=28.49 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecC----CCCHHHHHHHHHHHHccccCCcEEEE
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAY----NANPISTRAAIDLLKDIACNGKRVVI 392 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsy----a~np~s~~~~l~~l~~~~~~~~~i~V 392 (487)
-..|-.+|..+|++...+ -+..|..=+-+.++... +..+.|+..+. |++--.+.-+++++++.. .+|+++|
T Consensus 10 ~~la~~ia~~lg~~~~~~--~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~g-a~~i~~v 86 (308)
T TIGR01251 10 QELAQKVAKNLGLPLGDV--EVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRAS-AKSITAV 86 (308)
T ss_pred HHHHHHHHHHhCCeeeee--EEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 345666777888776655 35667643333444332 22344441433 222234444556666655 5678888
Q ss_pred EcCCCCCCcc------cHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCE
Q 011395 393 LGDMLELGST------ERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDV 466 (487)
Q Consensus 393 lg~m~e~G~~------~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~ 466 (487)
+.-|.-.-.+ ..---+-+++.+...++|++++.......+...+ ...+........+.+++.+...+.++
T Consensus 87 ~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~~~~f----~ip~~~l~a~~~l~~~i~~~~~~~~v 162 (308)
T TIGR01251 87 IPYYGYARQDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQIQGFF----DVPVDNLYASPVLAEYLKKKILDNPV 162 (308)
T ss_pred EEecccchhccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHhcCcC----CCceecccCHHHHHHHHHhhCCCCCE
Confidence 8543211000 0011346888888888999999988865544333 11233344556666666554333344
Q ss_pred EEEecCCCC
Q 011395 467 VLVKGSRAM 475 (487)
Q Consensus 467 vLv~GSr~~ 475 (487)
|+--...+.
T Consensus 163 iv~pd~g~~ 171 (308)
T TIGR01251 163 VVSPDAGGV 171 (308)
T ss_pred EEEECCchH
Confidence 443344443
No 192
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=54.35 E-value=61 Score=36.15 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=47.6
Q ss_pred eCC-CChHhHHHHHHHHHHhCCCceEecC--C--CCCC----------cchhhh-----HhhcCCCCCcEEEEeccCCCc
Q 011395 138 TGS-VGKSTTKSMIALALESLGVNVFQSY--G--NWNN----------RVGVAL-----SLIGIDRAVDIAVLEMGMSGK 197 (487)
Q Consensus 138 TGT-nGKTTT~~ml~~iL~~~g~~v~~t~--g--~~n~----------~~g~p~-----~l~~~~~~~~~~V~E~g~~~~ 197 (487)
|+| .|||+++.-|.+.|++.|++|+... + .+.. ....-+ .+.++..++|+.++|-+....
T Consensus 10 T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~~~~~~~~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~ 89 (684)
T PRK05632 10 TGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLTMSEVEALLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTR 89 (684)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCHHHHHHHHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCC
Confidence 444 7999999999999999999885311 1 1100 000000 111346789999999874322
Q ss_pred ch------HHhhccccCCcEEEEcCCC
Q 011395 198 GE------ILELARMARPEIRVVLNVG 218 (487)
Q Consensus 198 g~------i~~~~~~~~pdvaViTNI~ 218 (487)
+. ..++.+.+...+.++++..
T Consensus 90 ~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 90 KHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred cCcccCchHHHHHHHhCCCEEEEECCC
Confidence 21 1233444467777888764
No 193
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=54.10 E-value=51 Score=29.44 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHH-HHhhhhcCCeEEEE
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAA-ENMNLIKTDYIVVT 447 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~-~~~~~~~~~~~~~~ 447 (487)
+|+.+. +.+++ .+|.++++|. |..+....+++.+.+.+.++- |+.+....+.+. .++. ..-
T Consensus 16 ~p~~aa---~lLk~---AKRPvIivG~----ga~~~~a~e~l~~laEklgiP-VvtT~~~~~~~~~kgv~-------~~~ 77 (162)
T TIGR00315 16 SPKLVA---MMIKR---AKRPLLIVGP----ENLEDEEKELIVKFIEKFDLP-VVATADTYRALIEAGIE-------SEE 77 (162)
T ss_pred CHHHHH---HHHHc---CCCcEEEECC----CcCcccHHHHHHHHHHHHCCC-EEEcCccccccccCCee-------cCC
Confidence 465544 44444 3577888884 444445556666666666543 444443211111 1110 001
Q ss_pred CCHHHHHHHHH----hhC---CCCCEEEEecCCCCcHHHHHHHHHh
Q 011395 448 NDAEILSQKIV----KRL---KSNDVVLVKGSRAMQMEKVVDVIKA 486 (487)
Q Consensus 448 ~d~~~ai~~l~----~~~---~~~d~vLv~GSr~~~~e~~~~~l~~ 486 (487)
.+.-++...+. +-. .+-|+||+.|++-....+++..|++
T Consensus 78 ~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG~~~y~~~~~ls~lk~ 123 (162)
T TIGR00315 78 MNLHEITQFLADPSWEGFDGEGNYDLVLFLGIIYYYLSQMLSSLKH 123 (162)
T ss_pred CCHHHHHHhccCchhhhccCCCCcCEEEEeCCcchHHHHHHHHHHh
Confidence 22333333221 122 4569999999999888888888863
No 194
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=53.67 E-value=14 Score=35.06 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=22.7
Q ss_pred EEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+--|-.||||++.-|+..|.+.|++|.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~Vl 33 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVL 33 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 344678999999999999988888885
No 195
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=53.59 E-value=12 Score=36.19 Aligned_cols=25 Identities=48% Similarity=0.675 Sum_probs=21.8
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|=.|||||+.-|+..|.+.|++|.
T Consensus 8 KGGVGKTT~a~nLA~~La~~G~~Vl 32 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAALAEMGKKVM 32 (275)
T ss_pred CCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 4567899999999999988899885
No 196
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=53.43 E-value=1.3e+02 Score=29.73 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCC---CCHHHHHHHHHHHHccccCCcEEEEEcC
Q 011395 321 AAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYN---ANPISTRAAIDLLKDIACNGKRVVILGD 395 (487)
Q Consensus 321 aAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya---~np~s~~~~l~~l~~~~~~~~~i~Vlg~ 395 (487)
.|-.+|..||++...+ .++.|..=+-..++... +..+.|+-..+. .+--.+--+++++++.. .+++++|+--
T Consensus 3 lA~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~-a~~i~~ViPY 79 (302)
T PLN02369 3 LSQEIACYLGLELGKI--TIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRAS-AKRITAVIPY 79 (302)
T ss_pred HHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcC-CCeEEEEeec
Confidence 4556777888887654 35667642323333222 233444444221 12223334445566554 4677788754
Q ss_pred CCCCCcccH-------HHHHHHHHHHHHcCCCEEEEECccHHHHH
Q 011395 396 MLELGSTER-------ESHEKILSYCCDACIDLIGLVGDRFRAAA 433 (487)
Q Consensus 396 m~e~G~~~~-------~~~~~~~~~l~~~~~d~vi~~g~~~~~i~ 433 (487)
|.-. ..++ ---+.+++.+...++|+|+++......+.
T Consensus 80 l~Ys-RQDr~~~~~e~isak~va~lL~~~g~d~vi~vDlHs~~i~ 123 (302)
T PLN02369 80 FGYA-RADRKTQGRESIAAKLVANLITEAGADRVLACDLHSGQSM 123 (302)
T ss_pred cccc-ccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHh
Confidence 3210 0011 11245788888878999999876655444
No 197
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=53.39 E-value=13 Score=36.76 Aligned_cols=31 Identities=29% Similarity=0.372 Sum_probs=25.2
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|. |-.|||||+.-|+..|.+.|++|.
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVL 36 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEMGQKIL 36 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 4566655 556799999999999999999985
No 198
>PLN02796 D-glycerate 3-kinase
Probab=53.36 E-value=25 Score=35.42 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHH---hhcC-CCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 113 NTLNSLVNMACYA---RNSR-FSGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 113 d~~~aL~~la~~~---~~p~-~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
....++..+.... +... .+.-+|||+|.+ ||||++..|..+|+..+.++
T Consensus 77 ~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~ 131 (347)
T PLN02796 77 VYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRA 131 (347)
T ss_pred cHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCce
Confidence 5555666666432 1101 234579999975 79999999999996555443
No 199
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=53.35 E-value=26 Score=34.70 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhhcCCCC----cEEEEeCCCChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARNSRFSG----VLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~----~vI~VTGTnGKTTT~~ml~~iL 154 (487)
+.++.|+++..+...+..+. -++| .|.|||||...+|..++
T Consensus 56 ~~~~~l~~~lg~~L~~~~~~~~~~~l~G-~g~nGKStl~~~l~~l~ 100 (304)
T TIGR01613 56 ELIEYLQRVIGYSLTGNYTEQKLFFLYG-NGGNGKSTFQNLLSNLL 100 (304)
T ss_pred HHHHHHHHHHhHHhcCCCCceEEEEEEC-CCCCcHHHHHHHHHHHh
Confidence 34666666544222212221 2345 68999999999999999
No 200
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=53.09 E-value=15 Score=32.71 Aligned_cols=27 Identities=48% Similarity=0.528 Sum_probs=22.8
Q ss_pred EEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 136 GVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.--|-.||||++.-|+..|.+.|++|.
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vl 32 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVG 32 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEE
Confidence 334677999999999999988899985
No 201
>PRK13236 nitrogenase reductase; Reviewed
Probab=52.80 E-value=13 Score=36.65 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.3
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|.|- |=.|||||+.-|+..|.+.|++|.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVL 38 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRIL 38 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEE
Confidence 4555554 567899999999999999999985
No 202
>PTZ00301 uridine kinase; Provisional
Probab=52.48 E-value=16 Score=34.19 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|||+|- .||||.+..|.+-|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 468999994 68999999888766
No 203
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=52.31 E-value=12 Score=34.83 Aligned_cols=30 Identities=37% Similarity=0.408 Sum_probs=24.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
..+.|+-|-| ||||+-.||+.+|.-...++
T Consensus 28 Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v 59 (245)
T COG4555 28 GEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59 (245)
T ss_pred ceEEEEEcCCCCCchhHHHHHHHhccCCCceE
Confidence 6799999988 59999999999995444444
No 204
>PRK00698 tmk thymidylate kinase; Validated
Probab=51.72 E-value=27 Score=31.85 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=25.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|.|.|- .||||.+..|+.-|...|..+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 357888885 6899999999999977776654
No 205
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=51.37 E-value=13 Score=34.35 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.1
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 011395 133 VLVGVTG--SVGKSTTKSMIALALE 155 (487)
Q Consensus 133 ~vI~VTG--TnGKTTT~~ml~~iL~ 155 (487)
-+|||.| ..||||.+..++.+|.
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~ 29 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFP 29 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHcc
Confidence 4789998 4799999999999993
No 206
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=50.82 E-value=10 Score=33.45 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=16.7
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|+|||+ .||||++.-|+.. |+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~----g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR----GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH----T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc----CCeEE
Confidence 788986 6899999988866 66554
No 207
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=50.81 E-value=2.5e+02 Score=28.77 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=67.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHccccCCcE--EEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE---ECccHHHH
Q 011395 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKR--VVILGDMLELGSTERESHEKILSYCCDACIDLIGL---VGDRFRAA 432 (487)
Q Consensus 358 ~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~--i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~---~g~~~~~i 432 (487)
+-.++|=..+++++-++.+++.+-+-+ .-+. |-|||++ .+.+...+.+.+.+.+.+...-++ -|.+...=
T Consensus 282 PANFLDvGGgA~~e~v~~a~~~il~d~-~vk~IfVNIfGGI----~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~G 356 (387)
T COG0045 282 PANFLDVGGGATAERVKEAFKLILSDP-NVKAIFVNIFGGI----TRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEG 356 (387)
T ss_pred CcceeecCCCCCHHHHHHHHHHHhcCC-CccEEEEEEccCc----CccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHH
Confidence 345565557789999999999997654 2333 4456653 346677788888888865333333 37777665
Q ss_pred HHHhhhhcCCeEEEECCHHHHHHHHHhhCC
Q 011395 433 AENMNLIKTDYIVVTNDAEILSQKIVKRLK 462 (487)
Q Consensus 433 ~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~ 462 (487)
.+-+.+.+ .++..+++.+++.+.+.+.++
T Consensus 357 k~iL~esg-~~i~~~~~l~~aa~k~v~~~~ 385 (387)
T COG0045 357 KRILAESG-LNIIAADDLDEAAEKAVELAK 385 (387)
T ss_pred HHHHHHcC-CceEecccHHHHHHHHHHHhh
Confidence 55555554 348889999999999877654
No 208
>PRK11519 tyrosine kinase; Provisional
Probab=50.67 E-value=33 Score=38.47 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH--HhhcCCCCcEEEEeC---CCChHhHHHHHHHHHHhCCCceEe
Q 011395 114 TLNSLVNMACY--ARNSRFSGVLVGVTG---SVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 114 ~~~aL~~la~~--~~~p~~~~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+++..|-.. +..+..+.++|.||+ -.||||++.-|+..|...|.+|.-
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLl 560 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLL 560 (719)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 34566655542 222245678999998 469999999999999888888753
No 209
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=50.08 E-value=19 Score=33.47 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=21.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+||+||. .||||.+.+++.-| |+.+.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~vi 35 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNVV 35 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeEE
Confidence 357999996 78999999998755 66554
No 210
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=49.93 E-value=8.9 Score=36.98 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=20.5
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|-.|||||+.-|++.|.+.| +|.
T Consensus 10 KGGvGKTT~a~nLA~~La~~G-rVL 33 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAYSNDH-RVL 33 (264)
T ss_pred CCCCcHHHHHHHHhcccCCCC-EEE
Confidence 577899999999999997777 874
No 211
>PRK07429 phosphoribulokinase; Provisional
Probab=49.84 E-value=19 Score=36.13 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhC
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESL 157 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~ 157 (487)
+..+|||+|. .||||.++.|+.+|...
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 3468999995 58999999999999543
No 212
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=49.78 E-value=78 Score=25.46 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCC-CCCcccHHHHHHHHHHHHHc--CCCEEEEECccH--HHHHHHhhhhcCC
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDML-ELGSTERESHEKILSYCCDA--CIDLIGLVGDRF--RAAAENMNLIKTD 442 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~-e~G~~~~~~~~~~~~~l~~~--~~d~vi~~g~~~--~~i~~~~~~~~~~ 442 (487)
-+++.++..++.+.+.....+.+-++-++. +....+........+..... .++++-++++.. +.+...+....+.
T Consensus 11 ~t~ed~~~~~~~~~~~~~~~~~~~ll~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~r~AvV~~~~~~~~~~~~~~~~~~~ 90 (109)
T PF11964_consen 11 LTEEDYKELLPALEELIADHGKIRLLVDLRRDFEGWSPEARWEDAKFGLKHLKHFRRIAVVGDSEWIRMIANFFAAFPPI 90 (109)
T ss_dssp E-HHHHHHHHHHHHHHHTTSSSEEEEEEEC-CEEEEHHHHHHHHHHHHCCCCGGEEEEEEE-SSCCCHHHHHHHHHH-SS
T ss_pred eCHHHHHHHHHHHHHHHhcCCceEEEEEecCccCCCCHHHHHHHHHhchhhhcccCEEEEEECcHHHHHHHHHHHhcCCC
Confidence 367888888887766542233344443332 22233333333333322221 256676666543 3333333222245
Q ss_pred eEEEE--CCHHHHHHHHH
Q 011395 443 YIVVT--NDAEILSQKIV 458 (487)
Q Consensus 443 ~~~~~--~d~~~ai~~l~ 458 (487)
.+.+| ++.++|.+++.
T Consensus 91 ~~~~F~~~~~~~A~~WL~ 108 (109)
T PF11964_consen 91 EVRYFPPDEEEEALAWLR 108 (109)
T ss_dssp EEEEE--SSHHHHHHHHC
T ss_pred ceEEECCCCHHHHHHHHc
Confidence 67788 99999999874
No 213
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=49.54 E-value=28 Score=34.86 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=30.4
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCCCceEec
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
..+.|||.| .|-+|||-++-.|+..|++.|++++.-
T Consensus 44 ~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvv 83 (336)
T COG1663 44 RAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVV 83 (336)
T ss_pred cCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEE
Confidence 345788876 699999999999999999999998643
No 214
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=49.51 E-value=16 Score=32.45 Aligned_cols=21 Identities=48% Similarity=0.705 Sum_probs=17.2
Q ss_pred cEEEEeCCCChHhHHHHHHHHH
Q 011395 133 VLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL 154 (487)
-++||+|| ||||+..+|.+-|
T Consensus 16 ~vmGvsGs-GKSTigk~L~~~l 36 (191)
T KOG3354|consen 16 VVMGVSGS-GKSTIGKALSEEL 36 (191)
T ss_pred EEEecCCC-ChhhHHHHHHHHh
Confidence 35566664 8999999999999
No 215
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=49.26 E-value=56 Score=29.54 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=41.5
Q ss_pred cCCCCCCCceeEEeecC-CeEEEEecCCC-CHHHHHHHHHHHHcccc--CCcEEEEEcCCCCCCcccHHHHHHHHHHHHH
Q 011395 341 SNFSPVQMRSELLVSRS-GIKIVNDAYNA-NPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCD 416 (487)
Q Consensus 341 ~~~~~~~gR~e~~~~~~-~~~ii~Dsya~-np~s~~~~l~~l~~~~~--~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~ 416 (487)
.+++|++||++++=... +..+-.+ -|+ --.|++.||+.+.+-+- .=.+|.|+|+ ++- ..+.+..
T Consensus 61 ~k~RPL~gRiNiVLSR~~~~~~~~t-~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG-------~~v----y~~al~~ 128 (190)
T KOG1324|consen 61 EKFRPLPGRINVVLSRSLKEDFAPT-ENVFLSSSLESALDLLEEPPSSNSVEMVFVIGG-------SEV----YSEALNS 128 (190)
T ss_pred cccCCCCCceEEEEecccCcCcCCc-cCEEEeccHHHHHHhhcCCccccceeEEEEEcC-------HHH----HHHHHcC
Confidence 56899999999876521 1111111 111 13688889999876321 1147888874 111 2233444
Q ss_pred cCCCEEEEE
Q 011395 417 ACIDLIGLV 425 (487)
Q Consensus 417 ~~~d~vi~~ 425 (487)
..+|.+++|
T Consensus 129 p~~~~i~~T 137 (190)
T KOG1324|consen 129 PRCDAIHIT 137 (190)
T ss_pred cCcceEEEE
Confidence 447888886
No 216
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=49.12 E-value=46 Score=33.56 Aligned_cols=50 Identities=26% Similarity=0.171 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeC-C-CChHhHHHHHHHHHHhCCCceE
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTG-S-VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTG-T-nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|...+|+.+...+...+...|.+.|-| | .||||.+.||-.-.-+.|+++.
T Consensus 84 NlH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Pl 135 (415)
T KOG2749|consen 84 NLHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPL 135 (415)
T ss_pred hHHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcce
Confidence 777888877764333244466666666 4 4999999988765556677753
No 217
>PRK06547 hypothetical protein; Provisional
Probab=48.93 E-value=33 Score=30.88 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
....+|+|+|.. ||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346689998875 6999999998876
No 218
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=48.92 E-value=38 Score=35.25 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
+.-+|||+|-+ ||||.+..|..+|+..+.++
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~v 243 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKS 243 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCce
Confidence 34678999975 79999999999996555554
No 219
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=48.46 E-value=88 Score=29.86 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCC--CC-----ceeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPV--QM-----RSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~--~g-----R~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l 380 (487)
+..||..|...++|.+.|.++|+.-.+. .. ++|... ++|+.||++|.-.|+.-..+-++.+
T Consensus 49 L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~g-P~GvaiiVe~lTDN~nRt~~~ir~~ 116 (238)
T TIGR01033 49 LRTAIEKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGYA-PGGVAIIVECLTDNKNRTASEVRSA 116 (238)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCceEEEEEEecCCHHhHHHHHHHH
Confidence 5567888999999999999999877652 22 333333 5889999999988988777777655
No 220
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=48.40 E-value=23 Score=32.60 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=21.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.|+|||. .||||++.+++..+ |+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i 30 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPIL 30 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEe
Confidence 47999996 68999999998766 66654
No 221
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=48.25 E-value=47 Score=29.93 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc-HHHHHHHHHHHHHcCCCEEEEECccHHH-HHHHhhhhcCCeEEE
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE-RESHEKILSYCCDACIDLIGLVGDRFRA-AAENMNLIKTDYIVV 446 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~-~~~~~~~~~~l~~~~~d~vi~~g~~~~~-i~~~~~~~~~~~~~~ 446 (487)
+|+.+.. .+++ .+|.++++|. |... .+..+.+.+.+.+.++- |+.++...+. +..++.. .
T Consensus 23 ~p~~aa~---lI~~---AKrPlIivG~----ga~~~~ea~e~l~elaEkl~iP-VvtT~~~~~~~~~kgv~~----~--- 84 (171)
T PRK00945 23 SPKIAAM---MIKK---AKRPLLVVGS----LLLDDEELLDRAVKIAKKANIP-VAATGGSYKGLIDKGVDA----K--- 84 (171)
T ss_pred CHHHHHH---HHHh---CCCcEEEECc----CccccchHHHHHHHHHHHHCCC-EEEccccccccccCCccC----C---
Confidence 4655544 4444 3567888885 3333 44455666666666544 4454442221 1111110 0
Q ss_pred ECCHHHHHHHH----HhhC---CCCCEEEEecCCCCcHHHHHHHHHh
Q 011395 447 TNDAEILSQKI----VKRL---KSNDVVLVKGSRAMQMEKVVDVIKA 486 (487)
Q Consensus 447 ~~d~~~ai~~l----~~~~---~~~d~vLv~GSr~~~~e~~~~~l~~ 486 (487)
.-..-++...+ -+-+ .+-|+||+.|++-....+++..|++
T Consensus 85 ~~~lg~lg~~~~~p~~e~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~ 131 (171)
T PRK00945 85 YINLHELTNYLKDPNWKGLDGNGNYDLVIFIGVTYYYASQGLSALKH 131 (171)
T ss_pred cccHHHHHhhccCchhhhhcCCCCcCEEEEecCCchhHHHHHHHHhh
Confidence 01111222211 1112 3569999999999999999888863
No 222
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.82 E-value=16 Score=38.20 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=21.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH--hCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALE--SLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~--~~g~~v~ 162 (487)
.+|++.|. .|||||...|+..+. ..+++|.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~ 255 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVA 255 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 46777775 479999999988874 3456664
No 223
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=47.81 E-value=14 Score=38.37 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=46.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.=|-|+|. .||||-+..++..+.+.| ++.+|.-+ |..+.--++=++|.=+|.+|...+++ .-+++||
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~G-kiVKTmEs-------PRDl~v~~eITQYs~l~g~me~t~Di---LLLvRPD 332 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQG-KIVKTMES-------PRDLQVSPEITQYSPLEGDMEKTADI---LLLVRPD 332 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHhcC-cEEeeccC-------cccccCChhhhhcccccCchhhhccE---EEEecCC
Confidence 44777776 689999999999996665 56666543 21211112235677777665444333 3346899
Q ss_pred EEEEcCC
Q 011395 211 IRVVLNV 217 (487)
Q Consensus 211 vaViTNI 217 (487)
+.|+--+
T Consensus 333 YTIyDEm 339 (604)
T COG1855 333 YTIYDEM 339 (604)
T ss_pred ceehhhh
Confidence 8887554
No 224
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=47.61 E-value=21 Score=33.06 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=20.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~ 155 (487)
..+|+|+|. .||||.+..|...|.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999997 589999999999984
No 225
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.43 E-value=28 Score=33.11 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=34.6
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCc
Q 011395 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 110 ~~~d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (487)
||.|+...|+.+++ .-+.|-+-++|- .||||+...|++.|-...++
T Consensus 31 GNe~tv~rl~via~-----~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~k 78 (333)
T KOG0991|consen 31 GNEDTVERLSVIAK-----EGNMPNLIISGPPGTGKTTSILCLARELLGDSYK 78 (333)
T ss_pred CCHHHHHHHHHHHH-----cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhh
Confidence 46688888888876 445788888886 57999999999988433343
No 226
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=47.31 E-value=39 Score=29.46 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeccCCCcchHH--hhcc-ccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhc
Q 011395 181 IDRAVDIAVLEMGMSGKGEIL--ELAR-MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIF 239 (487)
Q Consensus 181 ~~~~~~~~V~E~g~~~~g~i~--~~~~-~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~ 239 (487)
...++++.++=.+........ ..++ +-+|-++|||-+..+. +-+++.++|..|-
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~-----~~~~i~~a~~~L~ 116 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPS-----DDANIERAKKWLK 116 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCcc-----chhhHHHHHHHHH
Confidence 355788888877655432111 1112 2378999999986552 4567777766554
No 227
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=47.26 E-value=19 Score=34.03 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.7
Q ss_pred CCCChHhHHHHHHHHHHhCCCceE
Q 011395 139 GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|=.||||+.-+|++.|-+.|.+|.
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~ 34 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVA 34 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEE
Confidence 667999999999999977787764
No 228
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=47.26 E-value=1.5e+02 Score=29.80 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=39.8
Q ss_pred hhcCCCCCcEEEEec-cCCCcchHHhh--c-cccCCcE---EEEcCCChhhhhcCCC-HHHHHHHHHhhcccCCCCCeEE
Q 011395 178 LIGIDRAVDIAVLEM-GMSGKGEILEL--A-RMARPEI---RVVLNVGDSHLESLGS-LEDVARAKGEIFQESKLGDVCV 249 (487)
Q Consensus 178 l~~~~~~~~~~V~E~-g~~~~g~i~~~--~-~~~~pdv---aViTNI~~dHl~~~gs-~e~~~~aK~~i~~~~~~~~~~v 249 (487)
+.+.....|+.|+|. |...+..+-.. . ..+.+.+ +|+|=|...|....-. ..+.+..-.. -...+|
T Consensus 78 L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~iv 151 (323)
T COG0523 78 LLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIV 151 (323)
T ss_pred HHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEE
Confidence 334456799999998 34444222211 1 1122333 6899999998765432 3343333222 356889
Q ss_pred EcCCc
Q 011395 250 LNADD 254 (487)
Q Consensus 250 ln~Dd 254 (487)
+|.-|
T Consensus 152 lNK~D 156 (323)
T COG0523 152 LNKTD 156 (323)
T ss_pred Eeccc
Confidence 99865
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=46.90 E-value=19 Score=34.86 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHH
Q 011395 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 114 ~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (487)
.++.++++..+... ...+-+.|-+|| |||+.+..++..+
T Consensus 7 ~~~l~~~~l~~l~~-g~~vLL~G~~Gt-GKT~lA~~la~~l 45 (262)
T TIGR02640 7 VKRVTSRALRYLKS-GYPVHLRGPAGT-GKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEcCCCC-CHHHHHHHHHHHh
Confidence 44555555555555 444556677775 9999999999866
No 230
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=46.76 E-value=20 Score=34.28 Aligned_cols=29 Identities=38% Similarity=0.471 Sum_probs=23.0
Q ss_pred EEEEeCCCChHhHHHHHHHHHH-hCCCceE
Q 011395 134 LVGVTGSVGKSTTKSMIALALE-SLGVNVF 162 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~-~~g~~v~ 162 (487)
+...-|=.|||||+-.|+..|. ..|++|.
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVL 36 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVL 36 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEE
Confidence 4556688899999999999995 3447875
No 231
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=46.58 E-value=19 Score=33.24 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=20.5
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|||||. .||||.+.++.. .|+.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~vi 29 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLIV 29 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 47999997 589999999874 466654
No 232
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=46.36 E-value=44 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 117 SLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 117 aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+.++|+...+-.....+|.+.|. .||||.+..+...|
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 334455422221334678999997 57999998888887
No 233
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=46.34 E-value=21 Score=32.19 Aligned_cols=25 Identities=40% Similarity=0.755 Sum_probs=20.1
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|||. .||||.+.++.. + |+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~i 27 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVI 27 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCEE
Confidence 4899987 689999999988 4 67664
No 234
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=46.27 E-value=28 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++..+|+|+|. .||||....|...|+.. ++|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~ 36 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVG 36 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEE
Confidence 45678999994 68999999999999777 8875
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.98 E-value=72 Score=32.67 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=21.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hCC-CceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE-SLG-VNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~-~~g-~~v~ 162 (487)
..+|++.|.+ |||||...|+.-+. ..| .++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~ 171 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA 171 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 4567777765 79999999998653 334 3553
No 236
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=45.97 E-value=22 Score=26.49 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+|+|+|. .||||.+..|.+.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3677776 58999999999998
No 237
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=45.93 E-value=16 Score=33.20 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|||+ .||||.+.+++... ++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i 28 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVI 28 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEE
Confidence 4899997 68999999888764 45554
No 238
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=45.92 E-value=18 Score=29.93 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.4
Q ss_pred EEeCCCChHhHHHHHHHHH
Q 011395 136 GVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL 154 (487)
|++| .||||++..|+..+
T Consensus 5 G~~G-sGKtTia~~L~~~~ 22 (129)
T PF13238_consen 5 GIPG-SGKTTIAKELAERL 22 (129)
T ss_dssp ESTT-SSHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHH
Confidence 4444 49999999999997
No 239
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=45.74 E-value=1.2e+02 Score=29.22 Aligned_cols=77 Identities=12% Similarity=0.268 Sum_probs=55.0
Q ss_pred EEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE---ECcc
Q 011395 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL---VGDR 428 (487)
Q Consensus 352 ~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~---~g~~ 428 (487)
+++..+|..+|.-| + ...+.+.++..++... .|..+|+|++.-.|. ++...++..+.+.+..++.|+- ||..
T Consensus 161 i~~~~~GlvvItGC-s--H~GI~niv~~~~~~~g-~rv~~ViGGFHL~~~-~~~~l~~~~~~l~el~v~~i~pcHCTg~~ 235 (259)
T COG1237 161 IVETEKGLVVITGC-S--HPGIVNIVEWAKERSG-DRVKAVIGGFHLIGA-SEERLEEVADYLKELGVEKIYPCHCTGEK 235 (259)
T ss_pred EEecCCceEEEEcC-C--cccHHHHHHHHHHhcc-ceeEEEeeeeccCCC-cHHHHHHHHHHHHhcCCCeEEecCCCCHH
Confidence 34445678888775 3 3577778888888773 788999998654443 4456677888999988888884 6777
Q ss_pred HHHHH
Q 011395 429 FRAAA 433 (487)
Q Consensus 429 ~~~i~ 433 (487)
+....
T Consensus 236 a~~~l 240 (259)
T COG1237 236 AKRYL 240 (259)
T ss_pred HHHHH
Confidence 66543
No 240
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=45.73 E-value=19 Score=34.88 Aligned_cols=32 Identities=44% Similarity=0.414 Sum_probs=26.5
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+|.|+ |-.|||||+..|+..|...+++++.
T Consensus 47 k~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300)
T KOG3022|consen 47 KHIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300)
T ss_pred ceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEE
Confidence 3467776 7889999999999999778888753
No 241
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=45.71 E-value=1.9e+02 Score=24.69 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred HHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHH-HHHHHhhhhcCCeEEEECCHHH
Q 011395 374 RAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFR-AAAENMNLIKTDYIVVTNDAEI 452 (487)
Q Consensus 374 ~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~-~i~~~~~~~~~~~~~~~~d~~~ 452 (487)
+.+|+.+++.+ ++-.+.-+.. |.. .+.+.+.+.++++..+++..+... .+.+.+...+ ..+.++...+.
T Consensus 12 ~qtLdVi~~~~-d~f~v~~Lsa----~~n----~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~-~~~~v~~G~~~ 81 (129)
T PF02670_consen 12 TQTLDVIRKHP-DKFEVVALSA----GSN----IEKLAEQAREFKPKYVVIADEEAYEELKKALPSKG-PGIEVLSGPEG 81 (129)
T ss_dssp HHHHHHHHHCT-TTEEEEEEEE----SST----HHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTT-SSSEEEESHHH
T ss_pred HHHHHHHHhCC-CceEEEEEEc----CCC----HHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcC-CCCEEEeChHH
Confidence 45788888765 3323333331 333 345555666667888888877654 4555553222 23455666666
Q ss_pred HHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHH
Q 011395 453 LSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 453 ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
+.+.+.. .+-|+|+..=+....++..+..|+
T Consensus 82 l~~~~~~--~~~D~vv~Ai~G~aGL~pt~~Ai~ 112 (129)
T PF02670_consen 82 LEELAEE--PEVDIVVNAIVGFAGLKPTLAAIK 112 (129)
T ss_dssp HHHHHTH--TT-SEEEE--SSGGGHHHHHHHHH
T ss_pred HHHHhcC--CCCCEEEEeCcccchHHHHHHHHH
Confidence 6655532 456888877666666766666654
No 242
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.57 E-value=1.4e+02 Score=24.25 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=46.0
Q ss_pred EEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEE
Q 011395 389 RVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVL 468 (487)
Q Consensus 389 ~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vL 468 (487)
+++|+| +|.......+.+.+... ....+-++..++.......+..+ +..+.|.+++++.- +-|+|+
T Consensus 2 ~v~iiG----~G~~g~~~~~~~~~~~~--~~~v~~v~d~~~~~~~~~~~~~~---~~~~~~~~~ll~~~-----~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIG----AGSIGRRHLRALLRSSP--DFEVVAVCDPDPERAEAFAEKYG---IPVYTDLEELLADE-----DVDAVI 67 (120)
T ss_dssp EEEEES----TSHHHHHHHHHHHHTTT--TEEEEEEECSSHHHHHHHHHHTT---SEEESSHHHHHHHT-----TESEEE
T ss_pred EEEEEC----CcHHHHHHHHHHHhcCC--CcEEEEEEeCCHHHHHHHHHHhc---ccchhHHHHHHHhh-----cCCEEE
Confidence 478888 46664444333333211 23334455666654433332222 22788877766542 358888
Q ss_pred EecCCCCcHHHHHHHHH
Q 011395 469 VKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 469 v~GSr~~~~e~~~~~l~ 485 (487)
+......+.+-+...++
T Consensus 68 I~tp~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALE 84 (120)
T ss_dssp EESSGGGHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHH
Confidence 88877777776666553
No 243
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=44.90 E-value=86 Score=27.93 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=80.5
Q ss_pred ChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhh
Q 011395 142 GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (487)
Q Consensus 142 GKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dH 221 (487)
|=-|+..+|+.++...|+.|..+.. |.. +...+.-++-+-+|.... ......-++|+.|..+
T Consensus 4 Gv~t~g~ila~a~~~~G~~v~~~~~-ygs---------~~rGG~~~~~vris~~~~---~~~~~~~~~Dilv~l~----- 65 (173)
T PF01558_consen 4 GVVTAGKILARAAAREGYYVQSTPE-YGS---------EIRGGPVVSHVRISDEPI---IPSPPVGEADILVALD----- 65 (173)
T ss_dssp THHHHHHHHHHHHHHTTSEEEEEEE-EES---------SSSSSCEEEEEEEESS-----SSSS-TSSESEEEESS-----
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeC-CCh---------hhcCCeEEEEEEEecCcC---ccCcccCCCCEEEEcC-----
Confidence 4457888999999899998864332 111 223344555555543211 1122224789999886
Q ss_pred hhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHH--HHhhcCCCC----CcEEEEeCCCCceEEEEeceEEecCCeEEE
Q 011395 222 LESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL--VANLTVPRG----VRKVFFGWRRGCDVRLVAAQVANGGLGVQV 295 (487)
Q Consensus 222 l~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~--~~~~~~~~~----~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~ 295 (487)
.+.+. ..+..++++|++|+|.+... ......... .+++.+...
T Consensus 66 ------~~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~~~~~~~v~~ip~~--------------------- 114 (173)
T PF01558_consen 66 ------PEALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAYFPRIERVIGIPAT--------------------- 114 (173)
T ss_dssp ------HHHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCHHHHHCEEEEE-HH---------------------
T ss_pred ------HHHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccccccceeEEeccHH---------------------
Confidence 22222 66777889999999986422 211111000 011111100
Q ss_pred EEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011395 296 VLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342 (487)
Q Consensus 296 ~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~ 342 (487)
++-....+..-..|.++.-+++..++++.+.+.++++.
T Consensus 115 ---------~ia~~~~~~~~~~N~~~lGa~~~~~~l~~e~~~~~i~~ 152 (173)
T PF01558_consen 115 ---------EIAKELGGNPRFANMVMLGALAKLLGLPLESLEEAIKE 152 (173)
T ss_dssp ---------HHHHHTTS-GGGHHHHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred ---------HHHHhhhcchhhHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11112334466789998888899999999999999876
No 244
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.85 E-value=2.2e+02 Score=32.31 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHH--HHhCCC
Q 011395 133 VLVGVTGSV--GKSTTKSMIALA--LESLGV 159 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~i--L~~~g~ 159 (487)
.+++|||-| ||||.-.++..+ +-..|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~ 353 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGI 353 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCC
Confidence 689999976 799999999877 334453
No 245
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=44.74 E-value=25 Score=39.84 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=32.6
Q ss_pred CccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 111 NVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 111 ~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|.|-++|+-+.-.. ..-.-+.|--|| |||||...|-.+|-..|.+|.
T Consensus 671 N~dQr~A~~k~L~a----edy~LI~GMPGT-GKTTtI~~LIkiL~~~gkkVL 717 (1100)
T KOG1805|consen 671 NNDQRQALLKALAA----EDYALILGMPGT-GKTTTISLLIKILVALGKKVL 717 (1100)
T ss_pred CHHHHHHHHHHHhc----cchheeecCCCC-CchhhHHHHHHHHHHcCCeEE
Confidence 44556665443221 111447788887 999999999899889999985
No 246
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.64 E-value=26 Score=32.70 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=36.3
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC--HHHHHHHHHHHHccccCCcEEEEE
Q 011395 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN--PISTRAAIDLLKDIACNGKRVVIL 393 (487)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~n--p~s~~~~l~~l~~~~~~~~~i~Vl 393 (487)
+|.+-+.+-...|.+ |+-+..+. .+..+|+|+-+.+ -+-+..++..++.-+ .....-|+
T Consensus 126 ip~Evl~qly~RfEe-Pn~~~rWD--spll~id~~d~~t~~IDfiesvl~~vekpk-e~n~~yvl 186 (261)
T COG4088 126 IPEEVLRQLYDRFEE-PNPDRRWD--SPLLVIDDSDVSTEVIDFIESVLRLVEKPK-ERNRRYVL 186 (261)
T ss_pred CCHHHHHHHHHhhcC-CCCCcccc--CceEEEecccccccchhHHHHHHHhccChh-hcCceEec
Confidence 677778888888985 77777766 4677777643332 345555665554432 23355665
No 247
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=44.51 E-value=21 Score=34.21 Aligned_cols=30 Identities=40% Similarity=0.495 Sum_probs=22.6
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+|.|. |-.|||||+.=|+-.|...|++|+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 44554 6679999999999999899999974
No 248
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=44.40 E-value=69 Score=29.19 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEecCC
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYG 166 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t~g 166 (487)
.+..+|=.||= .||||.+..|...|.+.|+.+...-|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDG 59 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDG 59 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 33457877875 58999999999999999999875444
No 249
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=44.32 E-value=21 Score=34.62 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=23.4
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHh-CCCceE
Q 011395 133 VLVGVT--GSVGKSTTKSMIALALES-LGVNVF 162 (487)
Q Consensus 133 ~vI~VT--GTnGKTTT~~ml~~iL~~-~g~~v~ 162 (487)
++|+|+ |=.|||||+.-|+..|-+ .|++|.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvL 35 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVF 35 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEE
Confidence 456665 556799999999999954 599985
No 250
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=44.11 E-value=13 Score=32.56 Aligned_cols=18 Identities=61% Similarity=0.759 Sum_probs=15.8
Q ss_pred EEeCCCChHhHHHHHHHHH
Q 011395 136 GVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 136 ~VTGTnGKTTT~~ml~~iL 154 (487)
||+|| ||||+..+|++-|
T Consensus 2 GVsG~-GKStvg~~lA~~l 19 (161)
T COG3265 2 GVSGS-GKSTVGSALAERL 19 (161)
T ss_pred CCCcc-CHHHHHHHHHHHc
Confidence 56664 9999999999999
No 251
>PHA02239 putative protein phosphatase
Probab=44.11 E-value=2.4e+02 Score=26.75 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=47.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHH
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAEN 435 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~ 435 (487)
+.+|-|-+ -+.+.++++++.+.....+...++++||..+.|..+.+....+.+.+.. ....+++.|..-..+.+.
T Consensus 3 ~~~IsDIH-G~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~-~~~~~~l~GNHE~~~l~~ 77 (235)
T PHA02239 3 IYVVPDIH-GEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSN-DDNVVTLLGNHDDEFYNI 77 (235)
T ss_pred EEEEECCC-CCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhc-CCCeEEEECCcHHHHHHH
Confidence 35788844 4678888888877543212457999999998888776555555544332 245666678765544433
No 252
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=44.07 E-value=22 Score=33.33 Aligned_cols=29 Identities=38% Similarity=0.464 Sum_probs=18.6
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHH-hCCCce
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALE-SLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~-~~g~~v 161 (487)
.-++|-||| |||+|...|-.=+. ..+.++
T Consensus 26 ~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ 55 (229)
T PF01935_consen 26 IAIFGTTGS-GKSNTVKVLLEELLKKKGAKV 55 (229)
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCCCCE
Confidence 447777776 99988776655553 444443
No 253
>PRK12377 putative replication protein; Provisional
Probab=44.04 E-value=44 Score=32.07 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=22.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+.++|. .|||..+..|+..|...|+.|.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 34555553 4999999999999877888774
No 254
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=43.94 E-value=1.4e+02 Score=31.37 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCHHH-HH-H-Hh-cCC-CC------CCCceeEEe-----ecCCeEEEEecCCCCHHHHHHHHHHHHc
Q 011395 319 ACAAAAVATLFGVSLAQ-VG-I-SL-SNF-SP------VQMRSELLV-----SRSGIKIVNDAYNANPISTRAAIDLLKD 382 (487)
Q Consensus 319 alaAia~a~~lg~~~~~-i~-~-~L-~~~-~~------~~gR~e~~~-----~~~~~~ii~Dsya~np~s~~~~l~~l~~ 382 (487)
...|..++..+|+|... +. + .+ ..+ .+ +..|+.... .+..+.+|||++ .+-..++++.+.|++
T Consensus 287 ~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvi-tTG~Tl~~a~~~Lr~ 365 (445)
T PRK08525 287 VPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSI-VRGTTSKKIVSLLRA 365 (445)
T ss_pred HHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEeccc-CcHHHHHHHHHHHHh
Confidence 45588889999987642 10 0 00 011 11 113443211 135688999965 689999999999998
Q ss_pred cccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHH
Q 011395 383 IACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKI 457 (487)
Q Consensus 383 ~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l 457 (487)
.. ..++.++..+ +........ -+.....+.++.+....++|.+.+.. .-..+-+.++..+.+
T Consensus 366 aG-A~~V~v~~~h----p~~~~~~~~----~i~~~~~~~li~~~~~~~ei~~~~~a----dsl~~ls~~~l~~~~ 427 (445)
T PRK08525 366 AG-AKEIHLRIAC----PEIKFPCYY----GIDTPTFEELISANKSVEEVRKYIGA----DSLSFLSIDELTRSI 427 (445)
T ss_pred cC-CCEEEEEEEC----CCcCCchhh----hCcCCChhhEEEcCCCHHHHHHHhCC----CeEeccCHHHHHHHh
Confidence 65 3444444432 222222222 22233467899988888888887732 233455666655554
No 255
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=43.93 E-value=27 Score=28.52 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=32.0
Q ss_pred EEEeCCCChHhHHHHHHHHHHhC-CCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccC
Q 011395 135 VGVTGSVGKSTTKSMIALALESL-GVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~-g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~ 194 (487)
++--|-.||||++.-|+..|.+. |++|..---+ .+ ...|+.|+-++.
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d--~~-----------~~~D~IIiDtpp 52 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD--LQ-----------FGDDYVVVDLGR 52 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC--CC-----------CCCCEEEEeCCC
Confidence 34456678999999999999777 8887532111 11 122899999974
No 256
>PLN02422 dephospho-CoA kinase
Probab=43.88 E-value=22 Score=33.75 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|||||. .||||.+.++.. .|+.+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 47999997 689999999873 477664
No 257
>PRK10818 cell division inhibitor MinD; Provisional
Probab=43.78 E-value=25 Score=33.91 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=24.0
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|+ |=.||||++.-|+..|.+.|++|.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vl 35 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTV 35 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 455555 567899999999999988887774
No 258
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=43.64 E-value=28 Score=32.01 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEec
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~t 164 (487)
...+-|||-| ||||.-++|+-+++....+|...
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 5678999998 59999999999998777777543
No 259
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=43.54 E-value=22 Score=33.07 Aligned_cols=26 Identities=50% Similarity=0.777 Sum_probs=20.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|||||. .||||.+.++.. .|+.+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~~v~ 33 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGCELF 33 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 47999997 589999988875 366654
No 260
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=43.45 E-value=25 Score=31.03 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 139 GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+-.||||++.-|...|++.|++|+.
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEE
Confidence 3479999999999999999998853
No 261
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=43.40 E-value=18 Score=33.31 Aligned_cols=19 Identities=42% Similarity=0.758 Sum_probs=15.2
Q ss_pred EEEEeCCC--ChHhHHHHHHH
Q 011395 134 LVGVTGSV--GKSTTKSMIAL 152 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~ 152 (487)
+|||||.+ ||||.+.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999985 79998887764
No 262
>PRK13973 thymidylate kinase; Provisional
Probab=43.34 E-value=28 Score=32.45 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEec
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
..|.|-|. .||||.+.+|+.-|++.|+++..+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45666665 589999999999999999988654
No 263
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.91 E-value=2.9e+02 Score=27.58 Aligned_cols=108 Identities=18% Similarity=0.113 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCC----CHHHHHHHHHHHHccccCCcEEEEE
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNA----NPISTRAAIDLLKDIACNGKRVVIL 393 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya~----np~s~~~~l~~l~~~~~~~~~i~Vl 393 (487)
-.|-.+|..||++...+ .+..|..=+-..++... +..+.||-. ..+ +--.+--+++++++.. .+++++|+
T Consensus 16 ~la~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~vrg~dV~iv~s-~~~~~nd~lmelll~~~alr~~~-a~~i~~V~ 91 (320)
T PRK02269 16 ELAEKVAQEIGIELGKS--SVRQFSDGEIQVNIEESIRGHHVFILQS-TSSPVNDNLMEILIMVDALKRAS-AESINVVM 91 (320)
T ss_pred HHHHHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCEEEEEec-CCCCccchHHHHHHHHHHHHHhC-CCeEEEEE
Confidence 35666777888876654 34566532222222222 233444444 322 2233444556666654 56788887
Q ss_pred cCCCCCCcc------cHHHHHHHHHHHHHcCCCEEEEECccHHH
Q 011395 394 GDMLELGST------ERESHEKILSYCCDACIDLIGLVGDRFRA 431 (487)
Q Consensus 394 g~m~e~G~~------~~~~~~~~~~~l~~~~~d~vi~~g~~~~~ 431 (487)
--+.-.-.+ ..---+-+++.+...++|+|+++......
T Consensus 92 PYl~YaRQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~ 135 (320)
T PRK02269 92 PYYGYARQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQ 135 (320)
T ss_pred eccccchhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHH
Confidence 543110000 01113457888888889999999876544
No 264
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.57 E-value=1.4e+02 Score=25.49 Aligned_cols=91 Identities=10% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHH
Q 011395 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (487)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~ 410 (487)
++++++.++..+..+ +.+. +.--..++...|+.+++.+++.. -+...+++|+..- -..+.+.+.
T Consensus 37 v~~e~~v~aa~~~~a-----diVg-------lS~L~t~~~~~~~~~~~~l~~~g-l~~v~vivGG~~~---i~~~d~~~~ 100 (128)
T cd02072 37 SPQEEFIDAAIETDA-----DAIL-------VSSLYGHGEIDCKGLREKCDEAG-LKDILLYVGGNLV---VGKQDFEDV 100 (128)
T ss_pred CCHHHHHHHHHHcCC-----CEEE-------EeccccCCHHHHHHHHHHHHHCC-CCCCeEEEECCCC---CChhhhHHH
Confidence 578888887655443 2332 22223467889999999998754 2345566664210 122223333
Q ss_pred HHHHHHcCCCEEEEECccHHHHHHHhh
Q 011395 411 LSYCCDACIDLIGLVGDRFRAAAENMN 437 (487)
Q Consensus 411 ~~~l~~~~~d~vi~~g~~~~~i~~~~~ 437 (487)
-+.+.++++|.++--|..+.++.+.++
T Consensus 101 ~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 101 EKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred HHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 345667789999998998888887764
No 265
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.53 E-value=3.6e+02 Score=26.95 Aligned_cols=110 Identities=16% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCC---CCHHHHHHHHHHHHccccCCcEEEEEc
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYN---ANPISTRAAIDLLKDIACNGKRVVILG 394 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya---~np~s~~~~l~~l~~~~~~~~~i~Vlg 394 (487)
-.|-.+|..||++...+ .+..|..=+-..++... +..+.+|-..+. .+--.+--+++++++.. .+++++|+-
T Consensus 20 ~la~~ia~~lg~~l~~~--~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~-a~~i~lViP 96 (323)
T PRK02458 20 EIAEKIAQAAGVPLGKL--SSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS-ANTVNVVLP 96 (323)
T ss_pred HHHHHHHHHhCCceeee--EEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC-CceEEEEEe
Confidence 35666777889887555 45666542323333222 233444443211 11233334445566654 567888885
Q ss_pred CCCCCCcccHH--------HHHHHHHHHHHcCCCEEEEECccHHHHHH
Q 011395 395 DMLELGSTERE--------SHEKILSYCCDACIDLIGLVGDRFRAAAE 434 (487)
Q Consensus 395 ~m~e~G~~~~~--------~~~~~~~~l~~~~~d~vi~~g~~~~~i~~ 434 (487)
-|.- .+.++ --+.+++.+...++|+|+++......+..
T Consensus 97 Yl~Y--aRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~i~~ 142 (323)
T PRK02458 97 YFGY--ARQDRIAKPREPITAKLVANMLVKAGVDRVLTLDLHAVQVQG 142 (323)
T ss_pred cccc--chhhcccCCCCCchHHHHHHHHhhcCCCeEEEEecCcHHhhc
Confidence 4321 11111 23467888888789999999877655443
No 266
>PRK06703 flavodoxin; Provisional
Probab=42.43 E-value=1.1e+02 Score=26.39 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc----HHHHHHHHHHHHHcCC
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTE----RESHEKILSYCCDACI 419 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~----~~~~~~~~~~l~~~~~ 419 (487)
|..++..++.+++....++.++||| +|+.. ....+.+.+.+.+.++
T Consensus 65 p~~~~~f~~~l~~~~l~~k~~~vfg----~g~~~y~~~~~a~~~l~~~l~~~G~ 114 (151)
T PRK06703 65 PYEAEDFHEDLENIDLSGKKVAVFG----SGDTAYPLFCEAVTIFEERLVERGA 114 (151)
T ss_pred cHHHHHHHHHHhcCCCCCCEEEEEc----cCCCChHHHHHHHHHHHHHHHHCCC
Confidence 7789999998875443578899998 45544 2334456667776654
No 267
>CHL00175 minD septum-site determining protein; Validated
Probab=42.13 E-value=26 Score=34.06 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.0
Q ss_pred CcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.++|+|++. .||||++.-|+..|.+.|++|.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVA 48 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 468888764 6899999999999988888875
No 268
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=42.01 E-value=30 Score=36.73 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCce
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v 161 (487)
|-.+|...|..-...-...-...||||| |||-|. +.+..+.+..+
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGS-GKTfT~---AnVI~~~~rPt 60 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGS-GKTFTM---ANVIAKVQRPT 60 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccC-CchhHH---HHHHHHhCCCe
Confidence 7678888888844441334567999998 999774 34444445554
No 269
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=41.71 E-value=84 Score=25.40 Aligned_cols=80 Identities=15% Similarity=0.256 Sum_probs=43.6
Q ss_pred HHHHHhCCeeccCCC-----CCeEEee-------CCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC
Q 011395 31 EIAESVNGKILKWGP-----PGIICTD-------TRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN 98 (487)
Q Consensus 31 ~l~~~~~~~~~~~~~-----~~~i~~d-------sr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~ 98 (487)
||++.++++++...+ +..+..= ...+++ |++.|. .|.| .+-+..|+. .|++++|.......
T Consensus 1 ~I~~~L~~~~l~g~~~~~~~~~~v~v~a~~~~~~~~~~~~--~~lvIt-~gdR---~di~~~a~~-~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 1 DIAKTLDGEVLNGGEELDRRVGKVVVGAMSLSDFLEYLKP--GDLVIT-PGDR---EDIQLAAIE-AGIACIILTGGLEP 73 (105)
T ss_dssp HHHHHTT-EEEE--TTS--EESEEEE-SS-HHHHHHCHHT--TEEEEE-ETT----HHHHHHHCC-TTECEEEEETT---
T ss_pred ChHHhcCCEEEECCcccceEEeeEEEEECCHHHHHhhcCC--CeEEEE-eCCc---HHHHHHHHH-hCCCEEEEeCCCCC
Confidence 578888888654321 3333221 234567 888876 5666 456677888 99888888754321
Q ss_pred C----------CccEEEEcCCCCccHHHHHHHH
Q 011395 99 W----------DKGFVQVEGNGNVNTLNSLVNM 121 (487)
Q Consensus 99 ~----------~~~~i~V~~~~~~d~~~aL~~l 121 (487)
+ ++|++.++ .|+.++...+
T Consensus 74 ~~~v~~la~~~~i~vi~t~----~dtf~ta~~i 102 (105)
T PF07085_consen 74 SEEVLELAKELGIPVISTP----YDTFETARLI 102 (105)
T ss_dssp -HHHHHHHHHHT-EEEE-S----S-HHHHHHHH
T ss_pred CHHHHHHHHHCCCEEEEEC----CCHHHHHHHH
Confidence 1 57777766 2555555444
No 270
>PRK09453 phosphodiesterase; Provisional
Probab=41.51 E-value=1e+02 Score=27.67 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=43.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc----HHHHHHHHHHHHHcCCCEEEEECccH
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE----RESHEKILSYCCDACIDLIGLVGDRF 429 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~----~~~~~~~~~~l~~~~~d~vi~~g~~~ 429 (487)
+.+|-|++ .|..+++++++.+++.. -..++++||....|.+. .....++.+.+.+.+...+++.|..-
T Consensus 3 i~viSD~H-g~~~~~~~~l~~~~~~~--~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD 74 (182)
T PRK09453 3 LMFASDTH-GSLPATEKALELFAQSG--ADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCD 74 (182)
T ss_pred EEEEEecc-CCHHHHHHHHHHHHhcC--CCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCc
Confidence 56899976 46788899988886643 46888899976544321 01124566667665444555667643
No 271
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=41.40 E-value=27 Score=32.52 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|+|.|+ .||||.+++|+.=|
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 468999997 68999999999998
No 272
>PLN02348 phosphoribulokinase
Probab=41.36 E-value=40 Score=34.67 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~ 155 (487)
...+|||+|- .||||.+..|..+|.
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999996 589999999999994
No 273
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=41.35 E-value=37 Score=35.92 Aligned_cols=33 Identities=36% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCCcEEEEeC------CCChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.++|.||. --|||||+-=|++.|.+.|.++.
T Consensus 36 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 36 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 3468999999 45899999999999988898864
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.73 E-value=43 Score=29.72 Aligned_cols=29 Identities=38% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++.++|- .||||++..++..|.+.|.++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~ 32 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVL 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 4555554 5899999999999977887774
No 275
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=40.51 E-value=39 Score=36.13 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCCcEEEEeCCC------ChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.+.|.||+.+ |||||+-=|.+.|...|+++.
T Consensus 61 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 61 PDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 357899999986 999999999999999998874
No 276
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=40.45 E-value=38 Score=33.18 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=23.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhC-C-CceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESL-G-VNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~-g-~~v~ 162 (487)
..+|++.|.+ |||||...|+..+... | ++|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~ 228 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVA 228 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEE
Confidence 4577777754 7999999999988654 4 6664
No 277
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=40.25 E-value=30 Score=31.66 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCcee--EEeecCCeEEEEecCCCCHHHHHHHHHHHHccc
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSE--LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e--~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~ 384 (487)
..|.+++..+|+|.--+++.-+.+- .+++. .+..++.+.|+|| --.+-.|+.++++.+++..
T Consensus 86 plA~~vA~~l~~p~v~vRK~~k~~g--~~~~~~g~~~~g~rVlIVDD-VitTGgS~~~~i~~l~~~G 149 (187)
T PRK13810 86 PLATAVSLETGLPLLIVRKSVKDYG--TGSRFVGDLKPEDRIVMLED-VTTSGGSVREAIEVVREAG 149 (187)
T ss_pred HHHHHHHHHhCCCEEEEecCCCccC--CCceEEccCCCcCEEEEEEe-ccCCChHHHHHHHHHHHCC
Confidence 3566666778887654544444442 23332 1223466889999 7889999999999998754
No 278
>PRK04040 adenylate kinase; Provisional
Probab=40.10 E-value=29 Score=31.72 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=21.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
.++|+|||. .||||.+..|.+-| ..++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l-~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL-KEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh-ccCCeE
Confidence 357888887 58999999999988 334444
No 279
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=39.57 E-value=35 Score=33.27 Aligned_cols=30 Identities=30% Similarity=0.319 Sum_probs=22.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v 161 (487)
+|.|.++| ..||||.+.-|...|++.+.++
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v 32 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEV 32 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 36788888 6899999999999998755554
No 280
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=39.39 E-value=3.3e+02 Score=25.56 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=59.2
Q ss_pred CCceeEEee---cCCeEEEEecCCC-CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc-HHHHHHHHHHHHHcCCCE
Q 011395 347 QMRSELLVS---RSGIKIVNDAYNA-NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE-RESHEKILSYCCDACIDL 421 (487)
Q Consensus 347 ~gR~e~~~~---~~~~~ii~Dsya~-np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~-~~~~~~~~~~l~~~~~d~ 421 (487)
|+=.|++.. +.+-.+|..+..+ .+.+..-+|....+.. .+|.++|+-+ ..+ ....+.|++.-. .|.
T Consensus 27 p~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~T-gGR~vCIvp~-----~~~~~~~~~~l~~~~~---~~~ 97 (218)
T PF07279_consen 27 PGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQT-GGRHVCIVPD-----EQSLSEYKKALGEAGL---SDV 97 (218)
T ss_pred CCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhc-CCeEEEEcCC-----hhhHHHHHHHHhhccc---ccc
Confidence 455555432 3455556654333 4666677777777766 7899999943 333 233333433211 122
Q ss_pred E-EEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhC---CCCCEEEEe
Q 011395 422 I-GLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRL---KSNDVVLVK 470 (487)
Q Consensus 422 v-i~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~---~~~d~vLv~ 470 (487)
+ +++|+.+.++...+... +-+.+--.+++.++.++..+ +.|.+|+.+
T Consensus 98 vEfvvg~~~e~~~~~~~~i--DF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 98 VEFVVGEAPEEVMPGLKGI--DFVVVDCKREDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred ceEEecCCHHHHHhhccCC--CEEEEeCCchhHHHHHHHHhccCCCceEEEEe
Confidence 2 34599898888777533 12222223455553333333 345555544
No 281
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=39.35 E-value=20 Score=31.90 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEE
Q 011395 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422 (487)
Q Consensus 343 ~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~v 422 (487)
.+|+|+|..++-..+.. .-.+ ...-..|++.+++..+.. .+.+.|+|+ .++-+.+..+ +|++
T Consensus 52 ~~pLp~R~niVlSr~~~-~~~~-~~~~~~s~~~al~~~~~~---~~~i~ViGG------------~~iy~~~l~~-~d~l 113 (161)
T PF00186_consen 52 FRPLPGRINIVLSRNPD-YEPE-GVEVVSSLEEALELAKDK---DEEIFVIGG------------AEIYEQFLPY-ADRL 113 (161)
T ss_dssp GSSBTTSEEEEESSSTT-SCTT-TSEEESSHHHHHHHHTTS---ESEEEEEE-------------HHHHHHHHHG-ESEE
T ss_pred ccCCCCCeEEEEEcCcc-cccC-CceeeCCHHHHHHHhhcc---CCcEEEECC------------HHHHHHHHHh-CCeE
Confidence 45899999987653221 0001 112234666677655432 367889984 2333333345 8999
Q ss_pred EEE
Q 011395 423 GLV 425 (487)
Q Consensus 423 i~~ 425 (487)
++|
T Consensus 114 ~lT 116 (161)
T PF00186_consen 114 YLT 116 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 282
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.11 E-value=1.3e+02 Score=32.07 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEE
Q 011395 110 GNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAV 189 (487)
Q Consensus 110 ~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V 189 (487)
|.+...+.|......-+- ....-.-|.-|| ||||++..++..| -...|......|....-..+..+...-|
T Consensus 17 GQe~vv~~L~~a~~~~ri-~ha~Lf~Gp~G~-GKTT~ArilAk~L-------nC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 17 GQDVLVRILRNAFTLNKI-PQSILLVGASGV-GKTTCARIISLCL-------NCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CcHHHHHHHHHHHHcCCC-CceEEEECCCCc-cHHHHHHHHHHHH-------cCcCCCCCCCccccHHHHHHhccCCCCE
Q ss_pred EeccCCCcchHHhhcccc----------CCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHH
Q 011395 190 LEMGMSGKGEILELARMA----------RPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256 (487)
Q Consensus 190 ~E~g~~~~g~i~~~~~~~----------~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~ 256 (487)
+|+...+...++++-.++ ++.+.||=++ +.+. .+-+++-.+.++.-++.-.+|+..+++.
T Consensus 88 ~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEa--h~Ls-----~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 88 IEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEV--HMLS-----NSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred EEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeCh--HhCC-----HHHHHHHHHHHhCCCCCeEEEEEeCChH
No 283
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.79 E-value=4e+02 Score=26.41 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCCCHHHH---HHHHHHHHccccCCcEEEEEc
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNANPIST---RAAIDLLKDIACNGKRVVILG 394 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya~np~s~---~~~l~~l~~~~~~~~~i~Vlg 394 (487)
..|-.+|..||.+...+ -+..|..=+-+.++... ++.+.|+-..+...-+.+ .-+++++++.. .+++++|+-
T Consensus 11 ~la~~ia~~lg~~~~~~--~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~g-a~~i~lViP 87 (309)
T PRK01259 11 ELAEKIAKYLGIPLGKA--SVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRAS-AGRITAVIP 87 (309)
T ss_pred HHHHHHHHHhCCceeee--EEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcC-CceEEEEee
Confidence 35666677888877543 35667643333333222 233444433222211233 33445555554 467788875
Q ss_pred CCCCCCcccH-H-------HHHHHHHHHHHcCCCEEEEECccHHHHH
Q 011395 395 DMLELGSTER-E-------SHEKILSYCCDACIDLIGLVGDRFRAAA 433 (487)
Q Consensus 395 ~m~e~G~~~~-~-------~~~~~~~~l~~~~~d~vi~~g~~~~~i~ 433 (487)
-|.- .+.+ . --+-+++.+...++|+|+++......+.
T Consensus 88 Yl~Y--sRQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~~ 132 (309)
T PRK01259 88 YFGY--ARQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQIQ 132 (309)
T ss_pred cccc--chhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHHc
Confidence 4421 1111 1 1245788888878999999987765443
No 284
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=38.68 E-value=46 Score=35.66 Aligned_cols=33 Identities=36% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCCcEEEEeC------CCChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.++|.||. --|||||+-=|++.|.+.|.++.
T Consensus 52 ~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~i 90 (578)
T PRK13506 52 PKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKVC 90 (578)
T ss_pred CCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCceE
Confidence 3568999999 45899999999999988888763
No 285
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=38.39 E-value=2.6e+02 Score=24.07 Aligned_cols=68 Identities=13% Similarity=-0.008 Sum_probs=41.8
Q ss_pred CCCCcEEEEeccCCCcchH---HhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHH
Q 011395 182 DRAVDIAVLEMGMSGKGEI---LELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPL 256 (487)
Q Consensus 182 ~~~~~~~V~E~g~~~~g~i---~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~ 256 (487)
..+.++.++=-++.++-.. ..+.-+.+|.|+|+|-+... +.++|..+|.-|... ...-++++++-|+.
T Consensus 62 ~~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLa------ed~dI~~~~~~L~ea-Ga~~IF~~s~~d~~ 132 (148)
T COG4917 62 LQDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLA------EDADISLVKRWLREA-GAEPIFETSAVDNQ 132 (148)
T ss_pred hhccceeeeeecccCccccCCcccccccccceEEEEeccccc------chHhHHHHHHHHHHc-CCcceEEEeccCcc
Confidence 4556666655554443100 11222358899999997643 358888888887754 34557888887764
No 286
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=38.23 E-value=3.8e+02 Score=26.94 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee-cCCeEEEEecCCCC-HHHH---HHHHHHHHccccCCcEEEEE
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS-RSGIKIVNDAYNAN-PIST---RAAIDLLKDIACNGKRVVIL 393 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~-~~~~~ii~Dsya~n-p~s~---~~~l~~l~~~~~~~~~i~Vl 393 (487)
...|-.+|..||++...+. +..|.-=+-..++... .+.-.+|..|.... -+.+ --+++++++.. .+|+++|+
T Consensus 31 ~~la~~ia~~lg~~l~~~~--~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~g-a~ri~~Vi 107 (330)
T PRK02812 31 PALAQEVARYLGMDLGPMI--RKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRAS-ARQITAVI 107 (330)
T ss_pred HHHHHHHHHHhCCCceeeE--EEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhC-CceEEEEE
Confidence 4456677778898876653 5677643333333322 12223444443211 1333 33445555554 56788887
Q ss_pred cCCCCCCcccH-------HHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCE
Q 011395 394 GDMLELGSTER-------ESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDV 466 (487)
Q Consensus 394 g~m~e~G~~~~-------~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~ 466 (487)
--|.-. ..++ ---+-+++.+...++|+|+++......+..-+ ...+..+.......+++.+. .-++.
T Consensus 108 PYl~Ya-RQDr~~~~~e~isak~vA~lL~~~g~d~vitvDlH~~~~~~fF----~ipv~nl~~~~~l~~~i~~~-~~~~~ 181 (330)
T PRK02812 108 PYYGYA-RADRKTAGRESITAKLVANLITKAGADRVLAMDLHSAQIQGYF----DIPCDHVYGSPVLLDYLASK-NLEDI 181 (330)
T ss_pred eccccc-ccccccCCCCCchHHHHHHHHHhcCCCEEEEEECCchHHcCcc----CCCceeeeChHHHHHHHHhc-CCCCe
Confidence 543210 0011 12245888888888999999877654433222 11223344445555555432 11344
Q ss_pred EEEe
Q 011395 467 VLVK 470 (487)
Q Consensus 467 vLv~ 470 (487)
+++.
T Consensus 182 vvVs 185 (330)
T PRK02812 182 VVVS 185 (330)
T ss_pred EEEE
Confidence 4444
No 287
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=38.01 E-value=52 Score=27.24 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 116 NSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
..+..+...... ...+.+.|+|. .|||++...+..-+...+..+
T Consensus 5 ~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v 50 (151)
T cd00009 5 EAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF 50 (151)
T ss_pred HHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe
Confidence 344445443322 12456667765 489999998888885434444
No 288
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=37.89 E-value=63 Score=29.64 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=22.3
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+++.|+|-. ||||+...+...++..|+++..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 355555554 5999999999999898888754
No 289
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=37.87 E-value=40 Score=38.29 Aligned_cols=31 Identities=29% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhCCCce
Q 011395 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v 161 (487)
+.+.+.||||| |||-++..|.+.|++.+.++
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~ 59 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPV 59 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 47899999997 99999999999998888765
No 290
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=37.77 E-value=31 Score=31.57 Aligned_cols=26 Identities=42% Similarity=0.733 Sum_probs=20.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|+|||. .||||.+.++.. + |+.+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~---g~~~i 30 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L---GAPVI 30 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 57999995 689999999887 4 66654
No 291
>PRK06761 hypothetical protein; Provisional
Probab=37.71 E-value=30 Score=33.97 Aligned_cols=30 Identities=37% Similarity=0.459 Sum_probs=24.2
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|.|+| -.||||+...|+.-|...++++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 5678888 46899999999999976676654
No 292
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=37.06 E-value=76 Score=28.61 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=37.2
Q ss_pred hcCCCCCCCceeEEee-------------cCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcC
Q 011395 340 LSNFSPVQMRSELLVS-------------RSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (487)
Q Consensus 340 L~~~~~~~gR~e~~~~-------------~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~ 395 (487)
|.-|.|-++|-+.-.. +.+..|+|| -..+-..++.+++.+++...+.+.++|+-+
T Consensus 112 laiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDD-vittG~Ti~E~Ie~lke~g~kpv~v~VL~d 179 (203)
T COG0856 112 LAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDD-VITTGSTIKETIEQLKEEGGKPVLVVVLAD 179 (203)
T ss_pred eEEEecccccccccCCcCceeecccccccCceEEEEec-ccccChhHHHHHHHHHHcCCCcEEEEEEEc
Confidence 4556666666552111 245678888 788999999999999987633455667654
No 293
>PRK00110 hypothetical protein; Validated
Probab=36.92 E-value=1.7e+02 Score=28.01 Aligned_cols=62 Identities=16% Similarity=0.069 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCCCC--CC-----ceeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 011395 318 NACAAAAVATLFGVSLAQVGISLSNFSPV--QM-----RSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (487)
Q Consensus 318 NalaAia~a~~lg~~~~~i~~~L~~~~~~--~g-----R~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l 380 (487)
.+..||..|...++|.+.|.++++...+. .. ++|-.. ++|+.||++|.-.|..-..+-++.+
T Consensus 48 ~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~g-P~GvaiiVe~lTDN~nRt~~~vR~~ 116 (245)
T PRK00110 48 RLRLAIDKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGYG-PGGVAIIVEALTDNRNRTAAEVRHA 116 (245)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEEc-CCCeEEEEEEecCCHHHHHHHHHHH
Confidence 35677888999999999999999987652 22 233333 4789999998888876666655544
No 294
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.89 E-value=2.9e+02 Score=26.91 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.2
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|++.| ..||||+...|+..+...+.+++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~ 107 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG 107 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE
Confidence 46888886 56899999999998866666664
No 295
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=36.81 E-value=3.4e+02 Score=29.09 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHccccCCcEEEEEcCC----CCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCC
Q 011395 367 NANPISTRAAIDLLKDIACNGKRVVILGDM----LELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTD 442 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m----~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~ 442 (487)
.|-|..++++.+.+.+.. .-+.+++-+.- -++-+--+.-.++=...+.+.++..|.+||+++..-+.-..+.+-.
T Consensus 409 g~~p~~l~~~~~~vs~~G-GTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD 487 (681)
T COG2216 409 GHIPEDLDAAVDEVSRLG-GTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD 487 (681)
T ss_pred CCCCHHHHHHHHHHHhcC-CCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch
Confidence 346777777777776543 12222221100 0111111222233334567888999999999986544433444422
Q ss_pred eEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHH
Q 011395 443 YIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQME 478 (487)
Q Consensus 443 ~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e 478 (487)
......++|+-++..++.-.+|-+|-++|..-.+-.
T Consensus 488 dfiAeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAP 523 (681)
T COG2216 488 DFIAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAP 523 (681)
T ss_pred hhhhcCChHHHHHHHHHHHhcCcEEEEcCCCCCcch
Confidence 333455788888888777778889999987544433
No 296
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.57 E-value=40 Score=36.06 Aligned_cols=34 Identities=38% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCcEEEEeCCC------ChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSV------GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTn------GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+.+.|-||+.+ |||||+-=|.+.|...|+++.
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 4457899999986 999999999999999999874
No 297
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=36.53 E-value=84 Score=29.89 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCCCC--C-----CceeEEeecCCeEEEEecCCCCHHHHHHHHHHH
Q 011395 318 NACAAAAVATLFGVSLAQVGISLSNFSPV--Q-----MRSELLVSRSGIKIVNDAYNANPISTRAAIDLL 380 (487)
Q Consensus 318 NalaAia~a~~lg~~~~~i~~~L~~~~~~--~-----gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l 380 (487)
-+..||..|...++|.+.|.++|+..... . .++|... ++|+.+|++|.-.|+.-+..-++.+
T Consensus 44 ~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~g-P~Gvaiive~lTDN~nRt~~~ir~~ 112 (234)
T PF01709_consen 44 RLRSAIEKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGYG-PGGVAIIVECLTDNKNRTVSDIRSI 112 (234)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEEE-TTTEEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEEc-CCCcEEEEEEeCCCHhHHHHHHHHH
Confidence 35677888999999999999999887752 2 2344444 5899999999888888777777665
No 298
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=36.49 E-value=36 Score=31.28 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=18.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+++|||.| ||||...+|....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHH
Confidence 589999998 7999999998443
No 299
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.99 E-value=5.1e+02 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=21.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHH--HHHHhCCCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~--~iL~~~g~~v 161 (487)
.+++.|||.| ||||+...+. .+|-+.|..|
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~v 360 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPI 360 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCc
Confidence 3578999987 8999887775 3455666554
No 300
>PRK13695 putative NTPase; Provisional
Probab=35.82 E-value=55 Score=29.16 Aligned_cols=28 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 134 LVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
.|++||.+ ||||...++..-|+..|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 37788765 79999999888886656654
No 301
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=35.70 E-value=41 Score=32.46 Aligned_cols=57 Identities=26% Similarity=0.229 Sum_probs=33.7
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCceEe--cCCCCCCcchhhhHhhcCCCCCcEEEEecc
Q 011395 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVFQ--SYGNWNNRVGVALSLIGIDRAVDIAVLEMG 193 (487)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~~--t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g 193 (487)
+.|-||| +-||..|++-|..+|++.|++|.. .-...|-.-|. +.- -+.-|+.|.|=|
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~Gt---msP-~qHGEVfVt~DG 64 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGT---MSP-YQHGEVFVTDDG 64 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCC---S-C-CTCS-EEE-TTS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCC---CCC-cCccceeEecCc
Confidence 5677787 569999999999999999999852 11222333331 110 124578888765
No 302
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.65 E-value=51 Score=34.99 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+|++.|.| |||||...|+..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 3577777775 69999999998873
No 303
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=35.61 E-value=4.4e+02 Score=25.96 Aligned_cols=114 Identities=17% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH---HccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHH--
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLL---KDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRA-- 431 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l---~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~-- 431 (487)
+.+.-+.| ++.-.+++.+--+. +.+.+..+.++|+|+ |.....-.+.+.. + ..+++|.+.+.++..
T Consensus 86 G~p~Almd--~~~lT~~RTaA~salaa~~l~~da~~l~iiGa----G~QA~~~~~a~~~-v--~~i~~v~v~~r~~~~a~ 156 (301)
T PRK06407 86 PELVAIFE--ANRLGQIRTGAVTAYATSILHKNVENFTIIGS----GFQAETQLEGMAS-V--YNPKRIRVYSRNFDHAR 156 (301)
T ss_pred CCEEEEEc--cchHHHHHHHHHHHHHHHHhhcCCcEEEEECC----cHHHHHHHHHHHh-c--CCCCEEEEECCCHHHHH
Confidence 34455667 35567777632221 222235689999994 6655433333333 2 358999999877543
Q ss_pred -HHHHhhhhcCCeEEEECCHHHHHHHH---------------HhhCCCCCEEEEecCCCCcHHH
Q 011395 432 -AAENMNLIKTDYIVVTNDAEILSQKI---------------VKRLKSNDVVLVKGSRAMQMEK 479 (487)
Q Consensus 432 -i~~~~~~~~~~~~~~~~d~~~ai~~l---------------~~~~~~~d~vLv~GSr~~~~e~ 479 (487)
+++.+.......+...++.+++++.+ .+++++|-.|...||..-.+.+
T Consensus 157 ~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P~~~~~~l~pg~hV~aiGs~~p~~~E 220 (301)
T PRK06407 157 AFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTPIFNRKYLGDEYHVNLAGSNYPNRRE 220 (301)
T ss_pred HHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCcEecHHHcCCCceEEecCCCCCCccc
Confidence 55555433223466678888877643 2344566566666664433333
No 304
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.34 E-value=4.1e+02 Score=27.30 Aligned_cols=88 Identities=26% Similarity=0.277 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCC-HHHHHHHhc-----CCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEE
Q 011395 320 CAAAAVATLFGVS-LAQVGISLS-----NFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVIL 393 (487)
Q Consensus 320 laAia~a~~lg~~-~~~i~~~L~-----~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vl 393 (487)
.-|+++...+|+. ++.+.+-|+ .-+|...||...+. .+| +.|-.+++++-+.++. .+-..+||
T Consensus 209 ~DAlavl~ry~i~~p~~v~~~l~~~~~~t~~~~d~~~~~v~~----~iI----asn~~sleaaa~~~~~---~G~~a~Il 277 (422)
T COG2379 209 EDALAVLERYGIALPESVRAHLESERAETPKPGDERFANVEN----RII----ASNRLSLEAAASEARA---LGFKAVIL 277 (422)
T ss_pred HHHHHHHHHhcccccHHHHHHHhhhcccCCCCCcccccccee----EEE----echHHHHHHHHHHHHh---cCCeeEEe
Confidence 3467777777776 777887777 34444445544432 455 4578999999988876 35678999
Q ss_pred cCCCCCCccc-HHHHHHHHHHHHHcC
Q 011395 394 GDMLELGSTE-RESHEKILSYCCDAC 418 (487)
Q Consensus 394 g~m~e~G~~~-~~~~~~~~~~l~~~~ 418 (487)
|++.|.-.++ ...|..+++.+++++
T Consensus 278 ~d~ieGEArevg~v~asiarev~~~g 303 (422)
T COG2379 278 GDTIEGEAREVGRVHASIAREVARRG 303 (422)
T ss_pred eccccccHHHHHHHHHHHHHHHHHcC
Confidence 9987743332 356667777777764
No 305
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.32 E-value=68 Score=36.18 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=27.4
Q ss_pred CCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
....++|+||++ .||||++.-|+..|...|.+|.
T Consensus 543 ~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvL 579 (754)
T TIGR01005 543 VAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRAL 579 (754)
T ss_pred CCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEE
Confidence 445678888865 6899999999999977777775
No 306
>PRK05541 adenylylsulfate kinase; Provisional
Probab=35.07 E-value=73 Score=28.32 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
.+..+|.++|- .||||.+..|+.-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34567888886 579999999999996554443
No 307
>PRK12378 hypothetical protein; Provisional
Probab=35.05 E-value=2.1e+02 Score=27.24 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCC-CceeEEe-e---cCCeEEEEecCCCCHHHHHHHHHHH
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQ-MRSELLV-S---RSGIKIVNDAYNANPISTRAAIDLL 380 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~-gR~e~~~-~---~~~~~ii~Dsya~np~s~~~~l~~l 380 (487)
+..||..|...++|.+.|.++++.-.+.. .-++.+. . ++|+.||++|.-.|..-..+-++.+
T Consensus 47 Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~~ 113 (235)
T PRK12378 47 LRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSA 113 (235)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHHHH
Confidence 45678888999999999999998766422 2233222 1 5889999999888887666666654
No 308
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=34.84 E-value=59 Score=29.43 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
...++|+|.+ ||||+...|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678888865 89999998888874
No 309
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=34.77 E-value=51 Score=28.69 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|.|+| -.||||.+..|+..|...+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~ 31 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVY 31 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 45555 35999999999999976666543
No 310
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.76 E-value=44 Score=32.41 Aligned_cols=33 Identities=39% Similarity=0.463 Sum_probs=27.8
Q ss_pred CCcEEEEeC---CCChHhHHHHHHHHHHhCCCceEe
Q 011395 131 SGVLVGVTG---SVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..++|+||. --|||||+..|+..|.+.|++|+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 467788874 468999999999999999999864
No 311
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=34.68 E-value=23 Score=36.97 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+.+|+||-|+| ||||+..+|+--|+
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 35799999999 59999998888773
No 312
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=34.60 E-value=46 Score=31.74 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHHHH
Q 011395 130 FSGVLVGVTGSVG--KSTTKSMIALALE 155 (487)
Q Consensus 130 ~~~~vI~VTGTnG--KTTT~~ml~~iL~ 155 (487)
++..+.+|.|-|| |||+...|..+|.
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467889999985 9999999999993
No 313
>PRK06762 hypothetical protein; Provisional
Probab=34.49 E-value=43 Score=29.45 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
++|.|+|. .||||.+..|+.-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889994 68999999999888
No 314
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=34.09 E-value=1.8e+02 Score=24.72 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHH---HHHHHhhhhcCCeEEEECCHHHHHHHHHhhCC
Q 011395 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFR---AAAENMNLIKTDYIVVTNDAEILSQKIVKRLK 462 (487)
Q Consensus 386 ~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~---~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~ 462 (487)
.+++++|+|. |+- -+.+...+...++..|++++.+.. .+++.+... ...+..+++..+.+ .
T Consensus 11 ~~~~vlviGa----Gg~----ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~-------~ 74 (135)
T PF01488_consen 11 KGKRVLVIGA----GGA----ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEAL-------Q 74 (135)
T ss_dssp TTSEEEEESS----SHH----HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHH-------H
T ss_pred CCCEEEEECC----HHH----HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHH-------h
Confidence 4789999994 543 356667777778999999987754 455555111 11233444444222 2
Q ss_pred CCCEEEEecCCCC
Q 011395 463 SNDVVLVKGSRAM 475 (487)
Q Consensus 463 ~~d~vLv~GSr~~ 475 (487)
+-|+|+-.-+-++
T Consensus 75 ~~DivI~aT~~~~ 87 (135)
T PF01488_consen 75 EADIVINATPSGM 87 (135)
T ss_dssp TESEEEE-SSTTS
T ss_pred hCCeEEEecCCCC
Confidence 3588887765544
No 315
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=34.06 E-value=1.7e+02 Score=26.70 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcccc--C-CcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCC-EEEEECcc
Q 011395 370 PISTRAAIDLLKDIAC--N-GKRVVILGDMLELGSTERESHEKILSYCCDACID-LIGLVGDR 428 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~--~-~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d-~vi~~g~~ 428 (487)
..+++.|...|+.... . .|+++++|+ +++..+....+.++.+.+.++. .+|.+|+.
T Consensus 88 ~~AL~~A~~~L~~~~~~~~~~rivi~v~S---~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 88 ITGIQIAQLALKHRQNKNQKQRIVAFVGS---PIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred HHHHHHHHHHHhcCCCcCCcceEEEEEec---CCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 4677777777765442 2 245777776 4444444445666667665543 33445543
No 316
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=33.95 E-value=82 Score=30.93 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=44.2
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceEecC---CCCCCcchhhhHhhc--CCCCCcEEEEeccCCCcchHHhhccccC
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSY---GNWNNRVGVALSLIG--IDRAVDIAVLEMGMSGKGEILELARMAR 208 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~---g~~n~~~g~p~~l~~--~~~~~~~~V~E~g~~~~g~i~~~~~~~~ 208 (487)
+-||||-.| ++|+.+|-+.||.|++.. ..+|..- + .|.+ ...+..+-+.+.++.....+.++...++
T Consensus 7 ITGITGQDG-----sYLa~lLLekGY~VhGi~Rrss~~n~~r-i--~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~ 78 (345)
T COG1089 7 ITGITGQDG-----SYLAELLLEKGYEVHGIKRRSSSFNTPR-I--HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQ 78 (345)
T ss_pred EecccCCch-----HHHHHHHHhcCcEEEEEeeccccCCccc-c--eeccccccCCceeEEEeccccchHHHHHHHHhcC
Confidence 457777777 788888889999997643 2333321 1 1222 2345567788877766666667666678
Q ss_pred Cc
Q 011395 209 PE 210 (487)
Q Consensus 209 pd 210 (487)
||
T Consensus 79 Pd 80 (345)
T COG1089 79 PD 80 (345)
T ss_pred ch
Confidence 87
No 317
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=33.94 E-value=48 Score=34.65 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=23.6
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-|||| .||||++..|.+.|++.|.+|.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~ 34 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQ 34 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 3555555 6999999999999999998763
No 318
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=33.75 E-value=2.2e+02 Score=26.02 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=61.7
Q ss_pred HcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHH-HHHHHHHccccCCcEEEEEcCCCCCCcccHHH
Q 011395 328 LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTR-AAIDLLKDIACNGKRVVILGDMLELGSTERES 406 (487)
Q Consensus 328 ~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~-~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~ 406 (487)
...++.+.|.+-+.+- .++||++.....+-..|=-.|.|+...+. ..|+.+.......+.+++-|. ..+.+
T Consensus 46 ~~~~t~~~i~~vV~~~--~K~Rfel~~~~~~~~~IRA~qGHSi~~v~~~~L~~i~~~~~~~p~~lyHGT------~~~~~ 117 (186)
T PF01885_consen 46 GLWVTEEDIREVVETD--DKQRFELRYEDPGGWRIRANQGHSIPTVDSLLLEPITLPEEEPPPILYHGT------YRKAW 117 (186)
T ss_dssp -TT--HHHHHHHHHH---SS--EEEE-----TTEEEESS--SS--------------SS---SEEEE--------BGGGH
T ss_pred CCCCCHHHHHHHHhhC--CCCCeeEEcccccCceEEECCCCCCccccccccccccCcccCCCCEEEEcc------chhhH
Confidence 4457789998888774 48999999222233345555888877555 334443222212346888763 33333
Q ss_pred HHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCC-CCCEEEEecCCC
Q 011395 407 HEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLK-SNDVVLVKGSRA 474 (487)
Q Consensus 407 ~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~-~~d~vLv~GSr~ 474 (487)
..-+.+-|....-.+|.++.........+.+. ...+.++-|.+.|++.-...-. ++.++|.-|..|
T Consensus 118 ~~I~~~GL~~m~R~hVHls~~~~~a~~sG~R~--~~~V~i~Id~~~a~~~Gi~f~~s~n~V~Lt~G~~G 184 (186)
T PF01885_consen 118 PSILEEGLKPMGRNHVHLSTGPETAVISGMRR--SCPVLIYIDAAKALEDGIKFYRSSNGVILTEGNDG 184 (186)
T ss_dssp HHHHHH-B---SSSSEEEES-HHHHHHHHTTS--SSBEEEEEEHHHHHHTT---EE-SSSEEEES----
T ss_pred HHHHHhCCCCCCCCEEEEeeccCCceeecCCC--CCeEEEEEcHHHHHHCCCeEEEeCCcEEEeccccc
Confidence 22233336666567888887755566666655 2467778888888887665554 456777778743
No 319
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=33.65 E-value=3.1e+02 Score=26.56 Aligned_cols=97 Identities=19% Similarity=0.311 Sum_probs=53.5
Q ss_pred HHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHH---------------H---HHHHh
Q 011395 375 AAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFR---------------A---AAENM 436 (487)
Q Consensus 375 ~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~---------------~---i~~~~ 436 (487)
..+..+++.+..++++.++-+ +...+++++.+.++|.+ ++|+.-. + ..+..
T Consensus 3 ~t~~~l~~~k~~g~ki~~lTa----------YD~~~A~~~d~agvD~i-LVGDSlgmv~~G~~sT~~vtld~mi~h~~aV 71 (261)
T PF02548_consen 3 VTVSDLRKMKQKGEKIVMLTA----------YDYPSARIADEAGVDII-LVGDSLGMVVLGYDSTLPVTLDEMIYHTKAV 71 (261)
T ss_dssp --HHHHHHHHHHT--EEEEE------------SHHHHHHHHHTT-SEE-EE-TTHHHHTT--SSSTT--HHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCcEEEEec----------ccHHHHHHHHHcCCCEE-EeCCcHHHheeCCCCCcCcCHHHHHHHHHHH
Confidence 345566665534778888853 22467888888888854 5676421 1 22333
Q ss_pred hhhcCCeEEE-------E-CCHHHHHHHHHhhCCC-C-CEEEEecCCCCcHHHHHHHH
Q 011395 437 NLIKTDYIVV-------T-NDAEILSQKIVKRLKS-N-DVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 437 ~~~~~~~~~~-------~-~d~~~ai~~l~~~~~~-~-d~vLv~GSr~~~~e~~~~~l 484 (487)
+.+.+..... + .+.++|++.+....++ | |.|-+-|.. ..-++++.|
T Consensus 72 ~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--~~~~~i~~l 127 (261)
T PF02548_consen 72 RRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--EIAETIKAL 127 (261)
T ss_dssp HHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--GGHHHHHHH
T ss_pred HhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch--hHHHHHHHH
Confidence 3322211111 2 6899999999888873 3 788888865 444555554
No 320
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.62 E-value=57 Score=34.88 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
++.++|..++.+ .|.....+.-+||- .|||||...|+.+| |+.+
T Consensus 93 eVk~WL~~~~~~--~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~ 138 (634)
T KOG1970|consen 93 EVKQWLKQVAEF--TPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQL 138 (634)
T ss_pred HHHHHHHHHHHh--ccCCCceEEEEeCCCCCCchhHHHHHHHhh---Ccee
Confidence 777888744432 34667779999996 57999999999999 6665
No 321
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=33.62 E-value=37 Score=35.07 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=17.3
Q ss_pred cEEEEeCC--CChHhHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIAL 152 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~ 152 (487)
..|||||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 46999995 799999999976
No 322
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=33.41 E-value=41 Score=30.06 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=18.7
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
.+|.|+|.+ ||||+...|+..|.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467888875 79999999988883
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=33.39 E-value=34 Score=30.35 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..+++|+|.| ||||...+|..+++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999997 899999999888743
No 324
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=33.27 E-value=55 Score=40.22 Aligned_cols=40 Identities=35% Similarity=0.406 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (487)
.....|.+|+.-.+. ..+.-.||=||| ||||+..+|+-+|
T Consensus 449 ~sl~lleql~~~Iq~-nep~LLVGeTGt-GKTT~IQ~La~~l 488 (4600)
T COG5271 449 CSLWLLEQLLWNIQN-NEPTLLVGETGT-GKTTMIQYLALKL 488 (4600)
T ss_pred hHHHHHHHHHHHhcc-CCceEEEecCCC-chhhHHHHHHHHh
Confidence 456667777764444 445667999998 9999999999999
No 325
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=33.05 E-value=44 Score=31.94 Aligned_cols=27 Identities=33% Similarity=0.259 Sum_probs=22.6
Q ss_pred EeCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 137 VTGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 137 VTGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
--|-.||||++..+++.|...|.+|..
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~ 36 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLC 36 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 447889999999999999778888753
No 326
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=32.82 E-value=35 Score=33.18 Aligned_cols=28 Identities=32% Similarity=0.171 Sum_probs=17.2
Q ss_pred CCCCcEEEEeCCCChHhHH-HHHHHHHHhC
Q 011395 129 RFSGVLVGVTGSVGKSTTK-SMIALALESL 157 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~-~ml~~iL~~~ 157 (487)
....-|.|..|| |||||. +-+..+|...
T Consensus 13 ~~~~lV~a~AGS-GKT~~l~~ri~~ll~~~ 41 (315)
T PF00580_consen 13 EGPLLVNAGAGS-GKTTTLLERIAYLLYEG 41 (315)
T ss_dssp SSEEEEEE-TTS-SHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCCC-CchHHHHHHHHHhhccc
Confidence 344667788886 899875 4455666443
No 327
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.79 E-value=2.4e+02 Score=24.11 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhh
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNL 438 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~ 438 (487)
.+.+.++..++.+++.. .....+++|+ ...++..+ .+.+.++|.+|-.|.+..++.+.+.+
T Consensus 65 ~~~~~~~~~~~~L~~~g-~~~i~vivGG-----~~~~~~~~----~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 65 GHLTLVPALRKELDKLG-RPDILVVVGG-----VIPPQDFD----ELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred hhHHHHHHHHHHHHhcC-CCCCEEEEeC-----CCChHhHH----HHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 45778888888887754 2344455553 22322222 35567799999999888887776643
No 328
>PRK00300 gmk guanylate kinase; Provisional
Probab=32.77 E-value=40 Score=30.80 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+..+|+|+|.+ ||||.+.+|...+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999986 8999999999887
No 329
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.76 E-value=32 Score=30.85 Aligned_cols=30 Identities=33% Similarity=0.302 Sum_probs=23.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
..+++|+|-| ||||...+|..++.....++
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 5699999997 89999999988874333333
No 330
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=32.75 E-value=1.2e+02 Score=31.22 Aligned_cols=50 Identities=26% Similarity=0.159 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHhhc---CCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 113 NTLNSLVNMACYARNS---RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 113 d~~~aL~~la~~~~~p---~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|...++..+..-+..+ .....+|.|-|- .||||.+.+|+.-|-+.|+++.
T Consensus 51 d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~ 105 (398)
T COG1341 51 DRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVA 105 (398)
T ss_pred HhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEE
Confidence 6666666666522211 223566777774 6999999999999988898874
No 331
>PRK08181 transposase; Validated
Probab=32.75 E-value=86 Score=30.50 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 114 ~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
...+|..+..|... ..++-++|=+|| |||-.+..+..-+...|++|..
T Consensus 92 ~~~~L~~~~~~~~~-~~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 92 QVMAIAAGDSWLAK-GANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred HHHHHHHHHHHHhc-CceEEEEecCCC-cHHHHHHHHHHHHHHcCCceee
Confidence 34444433345444 455666677776 9999999888777677888753
No 332
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=32.43 E-value=27 Score=33.92 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=36.9
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 101 ~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++..+ +..+-+.++.+..++|....-.||+.| .||.|.+.+.+++. ++++.
T Consensus 8 m~lVlf~-----~ai~hi~ri~RvL~~~~Gh~LLvG~~G-sGr~sl~rLaa~i~---~~~~~ 60 (268)
T PF12780_consen 8 MNLVLFD-----EAIEHIARISRVLSQPRGHALLVGVGG-SGRQSLARLAAFIC---GYEVF 60 (268)
T ss_dssp ------H-----HHHHHHHHHHHHHCSTTEEEEEECTTT-SCHHHHHHHHHHHT---TEEEE
T ss_pred cceeeHH-----HHHHHHHHHHHHHcCCCCCeEEecCCC-ccHHHHHHHHHHHh---ccceE
Confidence 3455567 777777777777777666677899988 79999999999888 45654
No 333
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=32.38 E-value=58 Score=32.36 Aligned_cols=79 Identities=24% Similarity=0.192 Sum_probs=51.7
Q ss_pred cchHHhhhcCCceEEEe-----ccccCC------CCccEEEEcCCCCccHHHHHHHHHH-HHhhcCCCCcEEEEeCC---
Q 011395 76 EFISPELYGKGCVGVIG-----NQVCNN------WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGS--- 140 (487)
Q Consensus 76 ~~~~~A~~~~Ga~~~v~-----~~~~~~------~~~~~i~V~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGT--- 140 (487)
.|+.+|++ +|...+=. ++.... .++.+.-|. ++..-|..++- -. ++.+.++|.|-||
T Consensus 88 ~~i~eAl~-~G~nVvsglh~~ls~dp~~~k~A~~~G~rl~dvR-----~p~~~l~~~~tG~~--~k~~a~~V~vvGTd~~ 159 (339)
T COG3367 88 EYIVEALE-AGMNVVSGLHSFLSDDPEFVKLAERTGVRLDDVR-----KPPLDLEYLCTGMA--RKVDAKVVLVVGTDCA 159 (339)
T ss_pred HHHHHHHH-hCchhhhhhHHHhhcChHHHHHHHHcCCeeEeec-----cCccchhhhccCcc--cccCCcEEEEeccccc
Confidence 67888999 88744321 111110 155566565 55444444441 11 2445789999999
Q ss_pred CChHhHHHHHHHHHHhCCCceE
Q 011395 141 VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.||-||+..|...+++.|+++.
T Consensus 160 vGKrTTa~~L~~~~~e~G~~a~ 181 (339)
T COG3367 160 VGKRTTALELREAAREEGIKAG 181 (339)
T ss_pred cchhHHHHHHHHHHHHhCCccc
Confidence 5999999999999999999873
No 334
>PRK13768 GTPase; Provisional
Probab=32.20 E-value=50 Score=31.72 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.3
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|.|+ |-.||||++.-++..|...|.+|.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~ 34 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVA 34 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceE
Confidence 44454 457899999999999978887764
No 335
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=32.18 E-value=1.1e+02 Score=29.70 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=49.2
Q ss_pred HHHHcCCCHHHHHHHhcCCCCC----CCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcC
Q 011395 325 VATLFGVSLAQVGISLSNFSPV----QMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (487)
Q Consensus 325 ~a~~lg~~~~~i~~~L~~~~~~----~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~ 395 (487)
-.+..|-++.++++-|+.|+.. ..||-+++. +|-. +.| ....+++...|..|..+. -+.|+|.|+
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK~-GG~~-~~~--~~~~~~l~~dla~L~~lG--l~~VlVHGg 76 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLEV-DHSV-FRS--LEMVQSLSFGLAFLQRMD--MKLLVVMGL 76 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEEE-Chhh-hcC--chhHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 3456799999999999999975 489999998 4443 333 234678888888887764 578999886
No 336
>PLN02759 Formate--tetrahydrofolate ligase
Probab=32.14 E-value=60 Score=35.10 Aligned_cols=33 Identities=39% Similarity=0.385 Sum_probs=28.1
Q ss_pred CCCcEEEEeCCC------ChHhHHHHHHHHHHh-CCCceE
Q 011395 130 FSGVLVGVTGSV------GKSTTKSMIALALES-LGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~~-~g~~v~ 162 (487)
.+.+.|.||+.+ |||||+-=|.+.|.+ .|.++.
T Consensus 67 ~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 67 PDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 347899999876 999999999999976 788864
No 337
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=31.83 E-value=68 Score=34.40 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTG------SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTG------TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.++|.||. .-|||||+.=|++.|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999999 45899999999999988898874
No 338
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.80 E-value=1.9e+02 Score=25.27 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=7.4
Q ss_pred CCCEEEEecCC
Q 011395 463 SNDVVLVKGSR 473 (487)
Q Consensus 463 ~~d~vLv~GSr 473 (487)
..|+|+..|.-
T Consensus 61 ~~DlVittGG~ 71 (152)
T cd00886 61 GVDLILTTGGT 71 (152)
T ss_pred CCCEEEECCCc
Confidence 46777777653
No 339
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=31.77 E-value=1.6e+02 Score=28.88 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=32.9
Q ss_pred cHHHHHHHhhhhcC------Ce--EEEECCHHHHHHHHHhhCCCCCEEEEecC----CCCcHHHHHHH
Q 011395 428 RFRAAAENMNLIKT------DY--IVVTNDAEILSQKIVKRLKSNDVVLVKGS----RAMQMEKVVDV 483 (487)
Q Consensus 428 ~~~~i~~~~~~~~~------~~--~~~~~d~~~ai~~l~~~~~~~d~vLv~GS----r~~~~e~~~~~ 483 (487)
+..+|.+.++...+ .+ ++...+|++|++.+.. +=|++++-|| ++.+|-++.+.
T Consensus 172 dt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~---~~Dl~iVVG~~nSSNs~rL~eiA~~ 236 (294)
T COG0761 172 DTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAP---EVDLVIVVGSKNSSNSNRLAEIAKR 236 (294)
T ss_pred HHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhh---cCCEEEEECCCCCccHHHHHHHHHH
Confidence 44567666655432 11 2223578998887754 4699999987 55566666544
No 340
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=31.35 E-value=55 Score=28.06 Aligned_cols=51 Identities=29% Similarity=0.492 Sum_probs=34.9
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccC
Q 011395 134 LVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~ 194 (487)
+.+..|-.||||++..++..|...|.++...-... +.+ .+ ..|+.|+.++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~----~~~----~~--~yd~VIiD~p~ 54 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL----GLA----NL--DYDYIIIDTGA 54 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC----CCC----CC--CCCEEEEECCC
Confidence 34557888999999999999988888775322221 101 01 17899999974
No 341
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=31.35 E-value=92 Score=33.87 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeC--CCChHhHHHHHHHHHHh
Q 011395 116 NSLVNMACYARNSRFSGVLVGVTG--SVGKSTTKSMIALALES 156 (487)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTG--TnGKTTT~~ml~~iL~~ 156 (487)
+..+.|.++|.....+..+|.+|| -.||||....|+..|..
T Consensus 376 eV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 376 EVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 444566665554234455889999 56899999999999954
No 342
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=31.32 E-value=74 Score=30.46 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=36.6
Q ss_pred EEEEeC----CCChHhHHHHHHHHHHhCCCceEec--CCCCCCcchhhhHhhcCCCCCcEEEEecc
Q 011395 134 LVGVTG----SVGKSTTKSMIALALESLGVNVFQS--YGNWNNRVGVALSLIGIDRAVDIAVLEMG 193 (487)
Q Consensus 134 vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~~t--~g~~n~~~g~p~~l~~~~~~~~~~V~E~g 193 (487)
.|-||| +-||..|++-|..+|++.|++|..- --..|-.-|. +.- -+.-|+.|.|=|
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gt---msP-~~HGEvfVt~DG 63 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGT---MSP-YQHGEVFVTDDG 63 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCC---CCC-ccceeEEEccCC
Confidence 466666 5699999999999999999998531 1223333331 110 124578888765
No 343
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=31.31 E-value=44 Score=30.01 Aligned_cols=25 Identities=40% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+..+..|+|-| ||||+...|..+|-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34677888876 79999999999993
No 344
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.23 E-value=39 Score=31.31 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+-++.
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 5689999997 89999999988874
No 345
>PRK06526 transposase; Provisional
Probab=30.93 E-value=71 Score=30.77 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=27.0
Q ss_pred HHHHHHH--HHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 117 SLVNMAC--YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 117 aL~~la~--~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+..|+. |... ..++-++|=+| .|||.++.-|..-+...|++|.
T Consensus 85 ~~~~l~~~~fi~~-~~nlll~Gp~G-tGKThLa~al~~~a~~~g~~v~ 130 (254)
T PRK06526 85 TIAHLGTLDFVTG-KENVVFLGPPG-TGKTHLAIGLGIRACQAGHRVL 130 (254)
T ss_pred HHHHHhcCchhhc-CceEEEEeCCC-CchHHHHHHHHHHHHHCCCchh
Confidence 3444544 4444 33333444444 4899999988777767888774
No 346
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=30.85 E-value=58 Score=31.55 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=20.8
Q ss_pred cEEEEe---CCCChHhHHHHH-HHHHHhCCCce
Q 011395 133 VLVGVT---GSVGKSTTKSMI-ALALESLGVNV 161 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml-~~iL~~~g~~v 161 (487)
++|+|+ |-.||||++.-+ +.++ +.+.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~-~~~~k~ 34 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALA-ALGGKV 34 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHH-hhCCCe
Confidence 567777 889999999999 5555 544444
No 347
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=30.73 E-value=42 Score=28.29 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..+++|+|.| ||||...+|...++.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred CCEEEEEccCCCccccceeeecccccc
Confidence 5689999998 799988888777743
No 348
>PF12846 AAA_10: AAA-like domain
Probab=30.73 E-value=44 Score=32.23 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=19.0
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-++|-||| ||||+...+..-+-..|..+.
T Consensus 5 ~i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 5 LILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EEECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 35666664 899988766544446776654
No 349
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=30.64 E-value=70 Score=28.73 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.7
Q ss_pred cCCeEEEEecCCCCHHHHHHHHHHHHccc
Q 011395 356 RSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (487)
Q Consensus 356 ~~~~~ii~Dsya~np~s~~~~l~~l~~~~ 384 (487)
+..+.|||| -..+-.++.++.+.+++..
T Consensus 108 g~~VlIVDD-vi~TG~Tl~~a~~~l~~~G 135 (173)
T TIGR00336 108 GDKVVVVED-VITTGTSILEAVEIIQAAG 135 (173)
T ss_pred CCEEEEEec-cccChHHHHHHHHHHHHcC
Confidence 457888999 7889999999999998754
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=30.41 E-value=57 Score=29.12 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.++|.|.|.. ||||.+..|+.-+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5778888864 7999999998776
No 351
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=30.32 E-value=2.3e+02 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=17.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|++-|||- .||||+..-+-. ....+.++.
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~ 31 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVA 31 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeE
Confidence 56777774 789988555544 335666664
No 352
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.22 E-value=52 Score=38.17 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=23.1
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++.|||- .||||+...+..++++.|++|..
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~ 395 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRG 395 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4445554 38999999999999888998853
No 353
>PRK10436 hypothetical protein; Provisional
Probab=30.15 E-value=58 Score=34.38 Aligned_cols=21 Identities=38% Similarity=0.392 Sum_probs=13.5
Q ss_pred cEEEEeCC--CChHhHH-HHHHHH
Q 011395 133 VLVGVTGS--VGKSTTK-SMIALA 153 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~-~ml~~i 153 (487)
-.|.|||. .|||||. .+|.++
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhh
Confidence 46677765 4899986 344444
No 354
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=30.00 E-value=3.4e+02 Score=26.78 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=38.0
Q ss_pred hhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCC-CeEEEcCCc
Q 011395 202 ELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLG-DVCVLNADD 254 (487)
Q Consensus 202 ~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~-~~~vln~Dd 254 (487)
.+.+.+..+.++.-||.+.++=..||.|++.++-.++++.+.++ +-.|++.++
T Consensus 257 ~~~~~~g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc 310 (330)
T cd03465 257 EAKKKVGDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGC 310 (330)
T ss_pred HHHHHhCCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCC
Confidence 33333455799999998874445689999999988888876553 566776654
No 355
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=29.96 E-value=1.2e+02 Score=26.87 Aligned_cols=44 Identities=32% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEecCCCCCCcchh
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQSYGNWNNRVGV 174 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~ 174 (487)
.+.-+|=|||- .||+|.+-.|.+.|-+.|.-++..-| -|-+.|+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDG-DNvRhGL 74 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDG-DNVRHGL 74 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecC-ccccccc
Confidence 34668888885 58999999999999887766654333 3444443
No 356
>PRK07078 hypothetical protein; Validated
Probab=29.87 E-value=81 Score=35.57 Aligned_cols=43 Identities=35% Similarity=0.346 Sum_probs=27.9
Q ss_pred CccHHHHHHHHHHHHhhcCCCCc----EEEEeCCCChHhHHHHHHHHH
Q 011395 111 NVNTLNSLVNMACYARNSRFSGV----LVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 111 ~~d~~~aL~~la~~~~~p~~~~~----vI~VTGTnGKTTT~~ml~~iL 154 (487)
+.+..+.|+++..+.-.+..+.. ++| +|.|||||..++|..+|
T Consensus 469 D~el~~fLq~~~GY~Ltg~~~~q~~~~l~G-~G~NGKSt~l~~l~~ll 515 (759)
T PRK07078 469 DAELQAYLQRMAGYALTGSTSEHALFFLYG-TGANGKSVFVNTLATIL 515 (759)
T ss_pred CHHHHHHHHHHhhhhhcCCCchheEEEEEC-CCCCCchHHHHHHHHHh
Confidence 33566777776653222122221 234 79999999999999999
No 357
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=29.74 E-value=1.1e+02 Score=26.19 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=35.9
Q ss_pred CCccccCCCCEEEEecCCcCC---cccchHHhhhcCCceEEEeccccC-------CCCccEEEEc
Q 011395 53 TRILAPNKNQWFFAITGQHFD---AHEFISPELYGKGCVGVIGNQVCN-------NWDKGFVQVE 107 (487)
Q Consensus 53 sr~v~~~~g~lFva~~G~~~d---gh~~~~~A~~~~Ga~~~v~~~~~~-------~~~~~~i~V~ 107 (487)
...+++ |++.|+ |.+|- .++++.-|++..|..+||.+.--. .-++|.|.++
T Consensus 40 ~~~v~~--gdilVa--G~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~ 100 (129)
T cd01674 40 STKTKQ--GDILVS--GFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELP 100 (129)
T ss_pred hhcCCC--CCEEEe--CCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEech
Confidence 356889 999999 77763 456777777778999888874211 0267778777
No 358
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=29.71 E-value=65 Score=33.91 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=26.1
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.|-||| |=||..|++-|..+|++.|++|.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt 35 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVT 35 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEE
Confidence 4566776 78999999999999999999984
No 359
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=29.67 E-value=4.9e+02 Score=24.59 Aligned_cols=140 Identities=16% Similarity=0.051 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCC-CHHHHHHHHHHHHccccCCcE-EEEEcCCCCCCccc-----HH
Q 011395 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNA-NPISTRAAIDLLKDIACNGKR-VVILGDMLELGSTE-----RE 405 (487)
Q Consensus 333 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~-np~s~~~~l~~l~~~~~~~~~-i~Vlg~m~e~G~~~-----~~ 405 (487)
.+.+.++++..+.-.+|+-.+. ++.|-.-| +-+-+.++++.+++.. -.++ +=.|.+ |.+. ..
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~G------LlSdGGVHSh~~Hl~al~~~a~~~g-v~~V~vH~f~D----GRDt~P~S~~~ 81 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMG------LLSDGGVHSHIDHLFALIKLAKKQG-VKKVYVHAFTD----GRDTPPKSALK 81 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEE------EESS-SSS--HHHHHHHHHHHHHTT--SEEEEEEEE-----SSSS-TTTHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEE------EecCCCccccHHHHHHHHHHHHHcC-CCEEEEEEecC----CCCCCcchHHH
Confidence 3556777777777777777765 46665555 4677888888877643 1233 223443 4442 36
Q ss_pred HHHHHHHHHHHcCCCEEEEE-Ccc--------HHHH---HHHhhhhcCCeEEEECCHHHHHHHHHh--------------
Q 011395 406 SHEKILSYCCDACIDLIGLV-GDR--------FRAA---AENMNLIKTDYIVVTNDAEILSQKIVK-------------- 459 (487)
Q Consensus 406 ~~~~~~~~l~~~~~d~vi~~-g~~--------~~~i---~~~~~~~~~~~~~~~~d~~~ai~~l~~-------------- 459 (487)
+.+++.+.+.+.+.-+|-.+ |.. +..+ .+.+..+ . ....+++..++++...+
T Consensus 82 yl~~l~~~l~~~~~g~IAsv~GRyyaMDRD~rWeRv~~Ay~alv~g-~-g~~~~~~~~~ai~~~Y~~g~tDEFi~P~vi~ 159 (223)
T PF06415_consen 82 YLEELEEKLAEIGIGRIASVSGRYYAMDRDKRWERVEKAYDALVNG-E-GPNKFDDALEAIEASYARGITDEFIPPTVIS 159 (223)
T ss_dssp HHHHHHHHHHHHTCTEEEEEEECCCCT--TS-HHHHHHHHHHHCT----SE-EESSHHHHHHHHHHTT--GGG---EEEB
T ss_pred HHHHHHHHHHhhCCceEEEEeceeeeeccccCHHHHHHHHHHHhcC-c-cccccCCHHHHHHHHHcCCCCCcCCCCEEec
Confidence 66778788877655566554 321 2222 2233221 1 22368899999987643
Q ss_pred -----hCCCCCEEEEecCCCCcHHHHHHHHH
Q 011395 460 -----RLKSNDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 460 -----~~~~~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
.+++||.|++.=-|.-++.+|...|.
T Consensus 160 ~~~~~~i~dgD~vif~NFR~DRarql~~al~ 190 (223)
T PF06415_consen 160 DKPYGGIKDGDAVIFFNFRPDRARQLTRALT 190 (223)
T ss_dssp -SBS----TT-EEEE--S-STTTHHHHHHHH
T ss_pred CCCCCCccCCCEEEEEecChhHHHHHHHHHc
Confidence 33567888888889999999988774
No 360
>PRK05569 flavodoxin; Provisional
Probab=29.61 E-value=1.7e+02 Score=24.86 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCC---HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCC
Q 011395 366 YNAN---PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419 (487)
Q Consensus 366 ya~n---p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~ 419 (487)
|..+ |..++..++.+......+|.+++||. .|.......+.+.+.+.+.++
T Consensus 59 y~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t---~g~~~~~~~~~~~~~l~~~g~ 112 (141)
T PRK05569 59 MDNNNIEQEEMAPFLDQFKLTPNENKKCILFGS---YGWDNGEFMKLWKDRMKDYGF 112 (141)
T ss_pred cCCCcCChHHHHHHHHHhhccCcCCCEEEEEeC---CCCCCCcHHHHHHHHHHHCCC
Confidence 5554 36899999988765435789999986 344333344556666666544
No 361
>PRK01215 competence damage-inducible protein A; Provisional
Probab=29.61 E-value=3.7e+02 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=12.1
Q ss_pred CCCCEEEEecCCCCcHHHHH
Q 011395 462 KSNDVVLVKGSRAMQMEKVV 481 (487)
Q Consensus 462 ~~~d~vLv~GSr~~~~e~~~ 481 (487)
...|+|++.|.-|..-.++.
T Consensus 61 ~~~DlVIttGG~g~t~dD~t 80 (264)
T PRK01215 61 DRADVVVSTGGLGPTYDDKT 80 (264)
T ss_pred cCCCEEEEeCCCcCChhhhH
Confidence 34588888877555544444
No 362
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=29.45 E-value=37 Score=33.49 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=23.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCc
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (487)
..++|+.|-| ||||+-.+|..+++....+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~ 61 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 5699999999 5999999999999543333
No 363
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=29.45 E-value=3e+02 Score=30.67 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=45.8
Q ss_pred ccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCC
Q 011395 402 TERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSR 473 (487)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr 473 (487)
.-+..-++..+.+.+.+++.+++||+++.....-.++.+-..++.--.+|+=.+...+.-++|.+|.+.|..
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDG 512 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDG 512 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECCC
Confidence 345555667778888889999999999765443333333123333345566566555544568888888874
No 364
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=29.38 E-value=53 Score=32.60 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=21.4
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-|-.||||++..++--+-+.|.+|.
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtL 33 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTL 33 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCee
Confidence 4679999999999999988899884
No 365
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=29.32 E-value=58 Score=29.98 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=22.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH--HhCCCce
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL--ESLGVNV 161 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL--~~~g~~v 161 (487)
.+++|||-| ||||...+|.... ...|..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 689999988 6999999998655 2355544
No 366
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=29.26 E-value=65 Score=34.72 Aligned_cols=33 Identities=39% Similarity=0.375 Sum_probs=27.9
Q ss_pred CCCcEEEEeCCC------ChHhHHHHHHHHHH-hCCCceE
Q 011395 130 FSGVLVGVTGSV------GKSTTKSMIALALE-SLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTn------GKTTT~~ml~~iL~-~~g~~v~ 162 (487)
.+.+.|-||+.+ |||||+-=|.+.|. ..|.++.
T Consensus 66 ~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 66 PNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 357899999986 99999999999997 5788764
No 367
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=29.23 E-value=79 Score=23.27 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
++..|+|-| ||||.-..+..+|
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888876 7999999999999
No 368
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=28.95 E-value=40 Score=30.94 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|+.++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999997 89999999988773
No 369
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=28.81 E-value=66 Score=31.28 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhc---------CC-CCCCCceeEE-------eecCCeEEEEecCCCCHHHHHHHHHHHH
Q 011395 319 ACAAAAVATLFGVSLAQVGISLS---------NF-SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLLK 381 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~---------~~-~~~~gR~e~~-------~~~~~~~ii~Dsya~np~s~~~~l~~l~ 381 (487)
+..|.++|..||+|.--+++.-+ +| .+..+|.|.. ..+..+.|||| .-.+-.+++++++.++
T Consensus 140 IpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll~ 218 (268)
T TIGR01743 140 IPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDD-FMKAGGTINGMINLLD 218 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEee-ecccCHHHHHHHHHHH
Confidence 55788888889988543333211 11 1223444432 23457889999 8889999999999998
Q ss_pred ccc
Q 011395 382 DIA 384 (487)
Q Consensus 382 ~~~ 384 (487)
+..
T Consensus 219 e~G 221 (268)
T TIGR01743 219 EFD 221 (268)
T ss_pred HCC
Confidence 854
No 370
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=28.75 E-value=79 Score=29.47 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 115 LNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++..+..+... ......+.++|.. |||+.+..++.-+...+..+.
T Consensus 26 ~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~ 74 (227)
T PRK08903 26 AELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNAR 74 (227)
T ss_pred HHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEE
Confidence 3455555544332 1223445566643 899999999887756565543
No 371
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.71 E-value=42 Score=30.96 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|..+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999997 79999988888774
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=28.65 E-value=1.9e+02 Score=29.08 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=17.4
Q ss_pred CcEEEEeCCCC--hHhHHHHHHHHH
Q 011395 132 GVLVGVTGSVG--KSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL 154 (487)
...|.|+|..| ||||...+..-+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35788888766 999998766544
No 373
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=28.59 E-value=58 Score=38.21 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.++.|+|- .||||+...+..+++..|++|..
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g 430 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVG 430 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45555554 38999999999999999999853
No 374
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=28.31 E-value=39 Score=33.50 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..++|+.|.| ||||+..+|..+++.
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5689999998 799999999998843
No 375
>PLN02318 phosphoribulokinase/uridine kinase
Probab=28.24 E-value=56 Score=35.59 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
...+|||+|-+ ||||.+..|...+
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 46789999975 7999999999988
No 376
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.22 E-value=47 Score=30.06 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=23.7
Q ss_pred CCcEEEEeCCCC--hHhHHHHHHHHHHhCCCce
Q 011395 131 SGVLVGVTGSVG--KSTTKSMIALALESLGVNV 161 (487)
Q Consensus 131 ~~~vI~VTGTnG--KTTT~~ml~~iL~~~g~~v 161 (487)
+..+++|.|-|| |||...+|+.+++.....+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 56 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE
Confidence 367999999875 9999999999885444343
No 377
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=28.09 E-value=1.8e+02 Score=27.71 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccH---HHHHHHHHHHHHc--CCCEEEEECc
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTER---ESHEKILSYCCDA--CIDLIGLVGD 427 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~---~~~~~~~~~l~~~--~~d~vi~~g~ 427 (487)
|..++.-++.+++.+++..+....+++.||+.+.|.... ...+.+.+.+.+. ....+++.|.
T Consensus 29 ~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~i~GN 95 (262)
T cd07395 29 WDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDPDIPLVCVCGN 95 (262)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccCCCcEEEeCCC
Confidence 444556688888888876433457888899887665532 2223444445443 2445555564
No 378
>PRK01184 hypothetical protein; Provisional
Probab=27.99 E-value=79 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|++||- .||||.+. ++++.|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~i~ 30 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPVVV 30 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcEEE
Confidence 57899996 57999765 46666776653
No 379
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=27.90 E-value=2.8e+02 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=25.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHccc----cCCcEEEEEcCCCCCCcccHHHHH
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDIA----CNGKRVVILGDMLELGSTERESHE 408 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~~----~~~~~i~Vlg~m~e~G~~~~~~~~ 408 (487)
+.+|-|.+ .+.+.++++++.+.... .....++.+||..+.|.++.+..+
T Consensus 4 iyaIGDIH-G~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld 56 (304)
T cd07421 4 VICVGDIH-GYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVID 56 (304)
T ss_pred EEEEEecc-CCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHH
Confidence 34566633 36677777766654321 012346666766666655544433
No 380
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=27.74 E-value=2.7e+02 Score=29.48 Aligned_cols=87 Identities=7% Similarity=-0.017 Sum_probs=52.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHh
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENM 436 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~ 436 (487)
..+.+|||+. .+-..++++.+.|++.. .+++.+...+ +........ -+.....+.+|......++|++.+
T Consensus 354 k~VlLVDD~I-tTGtTl~~~~~~Lr~aG-Ak~V~~~~~~----p~~~~p~~~----gid~~~~~elia~~~~~~ei~~~~ 423 (469)
T PRK05793 354 KRVVLIDDSI-VRGTTSKRLVELLRKAG-AKEVHFRVSS----PPVKYPCYF----GIDTPYRKELIGANMSVEEIREMI 423 (469)
T ss_pred CEEEEEcccc-CchHHHHHHHHHHHHcC-CCEEEEEEEC----CCcCcchhh----hccCCChhhEEEcCCCHHHHHHHh
Confidence 5578899964 68899999999999865 4555555543 222211111 122223567788777778888877
Q ss_pred hhhcCCeEEEECCHHHHHHHH
Q 011395 437 NLIKTDYIVVTNDAEILSQKI 457 (487)
Q Consensus 437 ~~~~~~~~~~~~d~~~ai~~l 457 (487)
.. .-..+-+.+..++.+
T Consensus 424 g~----dsl~~ls~~~l~~a~ 440 (469)
T PRK05793 424 GA----DSLGYLSIEGLLESL 440 (469)
T ss_pred CC----CeEeccCHHHHHHHh
Confidence 32 233455666655554
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=27.63 E-value=53 Score=31.64 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=17.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
..|.|+|. .||||+...+..-+.....++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~i 158 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERI 158 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEE
T ss_pred eEEEEECCCccccchHHHHHhhhccccccce
Confidence 45555554 489998877766663332444
No 382
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.54 E-value=4.8e+02 Score=23.87 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEE-CccHHHHHHHhhhhcCCeEEEE---CCHHHHHHHHHhhCCCCCEEEEecCCCCcHH
Q 011395 403 ERESHEKILSYCCDACIDLIGLV-GDRFRAAAENMNLIKTDYIVVT---NDAEILSQKIVKRLKSNDVVLVKGSRAMQME 478 (487)
Q Consensus 403 ~~~~~~~~~~~l~~~~~d~vi~~-g~~~~~i~~~~~~~~~~~~~~~---~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e 478 (487)
+++..+.+-+=+++.+.+.+.+. |+.|..+. .+.+ ....++ .+.++.++.+.+.+++|..|++-..+-..+-
T Consensus 67 ~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-~~~~---~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 67 DEEALELIERNAARFGVDNLEVVEGDAPEALP-DLPS---PDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-CCCC---CCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 34444444444555556655544 55555444 2211 122232 4677778888888888887777776655555
Q ss_pred HHHHHHH
Q 011395 479 KVVDVIK 485 (487)
Q Consensus 479 ~~~~~l~ 485 (487)
.+++.++
T Consensus 143 ~a~~~~~ 149 (187)
T COG2242 143 KALEALE 149 (187)
T ss_pred HHHHHHH
Confidence 5555554
No 383
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=27.51 E-value=4.3e+02 Score=27.94 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc----CCeEE
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK----TDYIV 445 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~----~~~~~ 445 (487)
+.+++..++..++.. .++++|.. ++ +.+..+...+.+.+ +.-..+++|+... |.+.+.+.+ ..++.
T Consensus 161 ~~~~~~l~~~~~~~~--~~~~~v~~-----~e-d~~vl~Aa~~a~~~-~~~~~iLvG~~~~-I~~~~~~~g~~~~~~eIi 230 (466)
T PRK08190 161 HDRYERLLAAARGLP--PLRTAVVH-----PC-DAESLRGALEAAEA-GLIEPVLVGPEAK-IRAAAEEAGLDLSGVRIV 230 (466)
T ss_pred hhhHHHHHHHHhcCC--CCceEEEc-----CC-CHHHHHHHHHHHHc-CCeeEEEECCHHH-HHHHHHHcCCCcCCCEEE
Confidence 466667777776533 23444442 23 44444555555544 3567888888652 333222221 12333
Q ss_pred EECCHHHHHHHHHhhCCCCCE-EEEecC
Q 011395 446 VTNDAEILSQKIVKRLKSNDV-VLVKGS 472 (487)
Q Consensus 446 ~~~d~~~ai~~l~~~~~~~d~-vLv~GS 472 (487)
..++.++....+...++.|+. .+++|.
T Consensus 231 ~~~~~~~s~~~a~~lv~~G~aD~~v~G~ 258 (466)
T PRK08190 231 DVPHSHAAAARAVALARAGEVEALMKGS 258 (466)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEeCC
Confidence 444555666667777765532 555884
No 384
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=27.39 E-value=49 Score=30.75 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..++++.|-| ||||...+|..++.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5689999997 79999999988874
No 385
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=27.30 E-value=6e+02 Score=25.27 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc----HHHHHHHhhhhcCCeEEEECCHHHHHHH
Q 011395 386 NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR----FRAAAENMNLIKTDYIVVTNDAEILSQK 456 (487)
Q Consensus 386 ~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~----~~~i~~~~~~~~~~~~~~~~d~~~ai~~ 456 (487)
.+.+|+++||.. +++-. +...+.|..++ -+|+++++. |+.+.+.+...+ ..+.+.+..+++++.
T Consensus 157 ~gl~iaivGDlk----hsRva-~S~~~~L~~~g-a~v~lvsP~~L~~p~~i~~~l~~~~-~~~~~~~~~e~~i~~ 224 (316)
T COG0540 157 DGLKIAIVGDLK----HSRVA-HSNIQALKRFG-AEVYLVSPETLLPPEYILEELEEKG-GVVVEHDSDEEVIEE 224 (316)
T ss_pred CCcEEEEEcccc----chHHH-HHHHHHHHHcC-CEEEEECchHhCCchhHHHHHhhcC-ceEEEecchhhhhcc
Confidence 478999999863 23323 45566788886 678888875 466777776542 123344444445544
No 386
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=27.28 E-value=3.2e+02 Score=24.63 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=27.4
Q ss_pred EEEECccH-HHHHHHhhhhc---CCeEEEECCHHHHHHHHHhhCCCCCEEEEec
Q 011395 422 IGLVGDRF-RAAAENMNLIK---TDYIVVTNDAEILSQKIVKRLKSNDVVLVKG 471 (487)
Q Consensus 422 vi~~g~~~-~~i~~~~~~~~---~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~G 471 (487)
.+.||... .++.+.++..- +..=..++...+....+.+...++|+||+-.
T Consensus 30 YvAT~~a~D~Em~~RI~~Hr~rRp~~W~tvE~~~~l~~~L~~~~~~~~~VLvDc 83 (175)
T COG2087 30 YVATGRAFDDEMQERIAHHRARRPEHWRTVEAPLDLATLLEALIEPGDVVLVDC 83 (175)
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcceEEeccccHHHHHHhcccCCCEEEEEc
Confidence 34455544 55666664432 2222334444555555555566789999863
No 387
>PRK00131 aroK shikimate kinase; Reviewed
Probab=27.20 E-value=73 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=18.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (487)
.+.|.++| ..||||++..|++.|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34677766 459999999999998
No 388
>PRK08118 topology modulation protein; Reviewed
Probab=27.20 E-value=69 Score=28.52 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.|.|.|+ .||||.+..|+..|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 4666654 58999999999988
No 389
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=1.9e+02 Score=30.07 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=68.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEecCCCCC-CcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhcccc
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVFQSYGNWN-NRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA 207 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~t~g~~n-~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~ 207 (487)
+.-+|.|.|-- ||||+---+++-|-+.+ +|....|-.. .++-.-..-+.+..+.=+..-|..+ .+|....+-.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~---e~I~~~l~~~ 167 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNL---EDIIAELEQE 167 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCH---HHHHHHHHhc
Confidence 35688999975 69998888888884444 8765554311 1111111111222333455556643 2333333346
Q ss_pred CCcEEEEcCCChhhhhcC----CCHHHHHHHHHhhcccCCCCCe
Q 011395 208 RPEIRVVLNVGDSHLESL----GSLEDVARAKGEIFQESKLGDV 247 (487)
Q Consensus 208 ~pdvaViTNI~~dHl~~~----gs~e~~~~aK~~i~~~~~~~~~ 247 (487)
+|++.||=+|..=|.+.. ||..++.+.-.+|++..+..++
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 999999999987776654 6788888777777766555553
No 390
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=27.11 E-value=1.9e+02 Score=27.61 Aligned_cols=64 Identities=11% Similarity=0.061 Sum_probs=42.2
Q ss_pred cCHHHHHHHhCCeecc----CCCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC
Q 011395 27 WTINEIAESVNGKILK----WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN 97 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~----~~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~ 97 (487)
|+++||.+.+...... +.+-.++...+..-.- ..+.+|+--. .+-+++|++ +||..+|+.++.-
T Consensus 1 M~~~~i~~~le~~~p~~~a~~wDn~Gl~vg~~~~~v--~~I~~alD~t----~~vi~~Ai~-~~~dlIitHHP~~ 68 (249)
T TIGR00486 1 MNLDELIQLINRFLPKELAEDGDNNGLQVGSGNEEV--KKVVVAVDAS----ESVADEAVR-LGADLIITHHPLI 68 (249)
T ss_pred CcHHHHHHHHHHhCCHHHhcCCCCCeeEecCCCccc--CEEEEEecCC----HHHHHHHHH-CCCCEEEEcCccc
Confidence 5778888777643221 1235566665333233 5688998544 456899999 9999999998653
No 391
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.10 E-value=2.2e+02 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=23.0
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecC
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSY 165 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~ 165 (487)
..++|.|||.+| ..=.++..+++ +.|+++..+.
T Consensus 4 ~~~~vlItGasg-~iG~~l~~~l~-~~G~~V~~~~ 36 (251)
T PRK07231 4 EGKVAIVTGASS-GIGEGIARRFA-AEGARVVVTD 36 (251)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHH-HCCCEEEEEe
Confidence 346899999998 44456666666 7788876443
No 392
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.95 E-value=46 Score=32.17 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|..++.
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999997 89999999988874
No 393
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=26.83 E-value=1.1e+02 Score=30.26 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHhhcCCCCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 124 YARNSRFSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 124 ~~~~p~~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..|. -.+...|+++| -.||||+..+|+..| |+...
T Consensus 126 ~~~~-~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~i 162 (309)
T PRK08154 126 AGRR-AARRRRIALIGLRGAGKSTLGRMLAARL---GVPFV 162 (309)
T ss_pred hhhh-ccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 3444 23356788888 468999999999888 55543
No 394
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=26.79 E-value=1.6e+02 Score=27.39 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=34.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV 425 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~ 425 (487)
..+.++|| .-++-.+|.++++++++.. .+++++-.-- -.++ ..+.+... +|.|++.
T Consensus 125 ~~VIlVDD-GiATGatm~aAi~~~r~~~-~~~IviAVPV------~p~~----a~~~l~s~-~D~vvc~ 180 (220)
T COG1926 125 RTVILVDD-GIATGATMKAAVRALRAKG-PKEIVIAVPV------APED----AAAELESE-ADEVVCL 180 (220)
T ss_pred CEEEEEeC-CcchhHHHHHHHHHHHhcC-CceEEEEccc------CCHH----HHHHHHhh-cCeEEEE
Confidence 34566777 8889999999999998865 3333333211 1222 23344454 6777765
No 395
>PRK06217 hypothetical protein; Validated
Probab=26.79 E-value=62 Score=29.13 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 3666664 58999999999988
No 396
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.71 E-value=45 Score=30.14 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|..+++
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999997 69999998888774
No 397
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=26.69 E-value=70 Score=33.90 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhC
Q 011395 131 SGVLVGVTGSV---GKSTTKSMIALALESL 157 (487)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~ 157 (487)
+++.|-||||. |||+++..|.+.|++.
T Consensus 237 ~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 237 KPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 46779999985 9999999999999654
No 398
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.61 E-value=90 Score=27.91 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=22.5
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|.|||- .||||...-+.+.|+..+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 678887 4899999999999987787764
No 399
>PRK07261 topology modulation protein; Provisional
Probab=26.60 E-value=67 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.2
Q ss_pred EEEeCCC--ChHhHHHHHHHHH
Q 011395 135 VGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 135 I~VTGTn--GKTTT~~ml~~iL 154 (487)
|.|+|.. ||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5555554 8999999988766
No 400
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=26.46 E-value=25 Score=39.54 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=24.2
Q ss_pred CCCCCcccccc---cCCcceeecCCCCCccCHHHHHHHhCCe
Q 011395 1 MASNIYPHTLA---CTSKTTFRCPSNSPIWTINEIAESVNGK 39 (487)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 39 (487)
||.|||||||. .+-...+.+|.. ++.+|.+.+.|.
T Consensus 178 mATnIPPHNl~Evida~~~li~np~~----~~~~lm~~i~GP 215 (804)
T COG0188 178 MATNIPPHNLGEVIDALIALIDNPDA----TIDELMEIIKGP 215 (804)
T ss_pred eecCCCCCCHHHHHHHHHHHHcCCCC----chhhhhhccCCC
Confidence 89999999984 344455555554 455888877763
No 401
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=26.39 E-value=54 Score=34.95 Aligned_cols=24 Identities=42% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHH
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALA 153 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~i 153 (487)
..+|.|.|.| |.||||+.+|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 3578888887 89999999999875
No 402
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.32 E-value=1.3e+02 Score=30.25 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=22.5
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+-+.|=||| |||..+..|+.-|...|+.|..
T Consensus 186 Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y 216 (329)
T PRK06835 186 LLFYGNTGT-GKTFLSNCIAKELLDRGKSVIY 216 (329)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHHHCCCeEEE
Confidence 334455555 9999999888877677888753
No 403
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.23 E-value=54 Score=29.98 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+..+++|+|-| ||||...+|.-+++
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36799999997 89999999887774
No 404
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=26.19 E-value=5.5e+02 Score=24.13 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=45.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccH
Q 011395 358 GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRF 429 (487)
Q Consensus 358 ~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~ 429 (487)
.+.+|-|.+ .|...++++++.+++.. -..+++.||+...|.. .+...++.+.+.+.+...+++.|..-
T Consensus 6 kIl~iSDiH-gn~~~le~l~~~~~~~~--~D~vv~~GDl~~~g~~-~~~~~~~l~~l~~l~~pv~~V~GNhD 73 (224)
T cd07388 6 YVLATSNPK-GDLEALEKLVGLAPETG--ADAIVLIGNLLPKAAK-SEDYAAFFRILGEAHLPTFYVPGPQD 73 (224)
T ss_pred EEEEEEecC-CCHHHHHHHHHHHhhcC--CCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 467899965 48999999999876533 3578999998665532 23334566666665455666667653
No 405
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=26.14 E-value=81 Score=28.51 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCcee-EEeecCCeEEEEecCCCCHHHHHHHHHHHHccc
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSE-LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIA 384 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e-~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~ 384 (487)
+..|.+++..+|+|.--+++.-+.+. .....+ .+..+..+.|+|| --.+-.++..+.+.+++..
T Consensus 70 i~lA~~lA~~l~~p~~~~rk~~k~yg-~~~~~~g~~~~g~~VlIVDD-vitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 70 VPLVAVTSVETGVPYVIARKQAKEYG-TGNRIEGRLDEGEEVVVLED-IATTGQSAVDAVEALREAG 134 (176)
T ss_pred HHHHHHHHHHHCCCEEEEeccCCcCC-CCCeEEecCCCcCEEEEEEE-eeCCCHHHHHHHHHHHHCC
Confidence 34566667778887543333222221 011111 1223467888999 7789999999999998754
No 406
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=26.11 E-value=2.8e+02 Score=24.06 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=36.1
Q ss_pred CcEEEEeCCCC-hHhHHHHHHHHHHhCCCceEecCCCCC--Ccchh--hhHhhcCCCCCcEEE
Q 011395 132 GVLVGVTGSVG-KSTTKSMIALALESLGVNVFQSYGNWN--NRVGV--ALSLIGIDRAVDIAV 189 (487)
Q Consensus 132 ~~vI~VTGTnG-KTTT~~ml~~iL~~~g~~v~~t~g~~n--~~~g~--p~~l~~~~~~~~~~V 189 (487)
.++|+|-|-+- ++.+++.+..-|++.||++....-.+. .-+|. -.+|.+++...|++.
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVd 78 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVD 78 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEE
Confidence 56777777554 466788999999999999864222111 22232 235666676666543
No 407
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.10 E-value=3.5e+02 Score=24.14 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=8.2
Q ss_pred CCCCEEEEecCCC
Q 011395 462 KSNDVVLVKGSRA 474 (487)
Q Consensus 462 ~~~d~vLv~GSr~ 474 (487)
+..|+|++.|.-|
T Consensus 57 ~~~dlVIttGG~G 69 (170)
T cd00885 57 ERADLVITTGGLG 69 (170)
T ss_pred hCCCEEEECCCCC
Confidence 3457777776533
No 408
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=26.05 E-value=3.3e+02 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc
Q 011395 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (487)
Q Consensus 388 ~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~ 428 (487)
++|++++|.. ++ ....+.+.+.+.+..+|.|+++|+-
T Consensus 5 ~kIl~iSDiH---gn-~~~le~l~~~~~~~~~D~vv~~GDl 41 (224)
T cd07388 5 RYVLATSNPK---GD-LEALEKLVGLAPETGADAIVLIGNL 41 (224)
T ss_pred eEEEEEEecC---CC-HHHHHHHHHHHhhcCCCEEEECCCC
Confidence 6799999853 22 3344556666665679999999874
No 409
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=26.01 E-value=90 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|.|.|- .||||++.+|+..| |++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 4666664 68999999999999 77754
No 410
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.96 E-value=55 Score=31.40 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.6
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-.||||++.-++..+.+.|++|.
T Consensus 8 kgG~GKtt~a~~la~~~a~~g~~vL 32 (254)
T cd00550 8 KGGVGKTTISAATAVRLAEQGKKVL 32 (254)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCce
Confidence 3567999999999999988888875
No 411
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.93 E-value=6.5e+02 Score=24.86 Aligned_cols=108 Identities=20% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee-cCCeEEEEecCCC--CHH--HHHHHHHHHHccccCCcEEEEEcCCC
Q 011395 323 AAVATLFGVSLAQVGISLSNFSPVQMRSELLVS-RSGIKIVNDAYNA--NPI--STRAAIDLLKDIACNGKRVVILGDML 397 (487)
Q Consensus 323 ia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~-~~~~~ii~Dsya~--np~--s~~~~l~~l~~~~~~~~~i~Vlg~m~ 397 (487)
-.+|..+|+++-.+ .+..|.-=+-..++.+. .+.-.+|.-+... |-. .+--+++++++.. .+++++|+--|.
T Consensus 3 ~~ia~~l~~~l~~~--~~~~F~DGE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~-a~~i~~ViPYl~ 79 (304)
T PRK03092 3 EEVAKELGVEVTPT--TAYDFANGEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRAS-AKRITVVLPFYP 79 (304)
T ss_pred HHHHHHhCCceeee--EEEECCCCCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcC-CCeEEEEEeccc
Confidence 34556677665443 34556532222222221 1222334443322 212 2334455666654 567788874331
Q ss_pred C-------CCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHH
Q 011395 398 E-------LGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAE 434 (487)
Q Consensus 398 e-------~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~ 434 (487)
- .++. .---+.+++.+...++|+|+++......+..
T Consensus 80 YaRQDr~~~~~e-~isak~va~lL~~~g~d~vitvD~H~~~~~~ 122 (304)
T PRK03092 80 YARQDKKHRGRE-PISARLVADLFKTAGADRIMTVDLHTAQIQG 122 (304)
T ss_pred ccccccccCCCC-CccHHHHHHHHHhcCCCeEEEEecChHHHHh
Confidence 1 0100 1123468888888789999999777655443
No 412
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=25.62 E-value=1.2e+02 Score=28.92 Aligned_cols=69 Identities=9% Similarity=0.180 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH
Q 011395 403 ERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVD 482 (487)
Q Consensus 403 ~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~ 482 (487)
.++....+.+.+..++++.+|+.|+.-.+..... ....+-+..+.+.+...|+++++|.+....+.+..
T Consensus 48 ~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~-----------~~e~~~~~~f~~~~~~~evi~i~GNHD~~i~~~~~ 116 (235)
T COG1407 48 TDRILKRLDRIIERYGPKRLIILGDLKHEFGKSL-----------RQEKEEVREFLELLDEREVIIIRGNHDNGIEEILP 116 (235)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccccCccc-----------cccHHHHHHHHHHhccCcEEEEeccCCCccccccc
Confidence 3445556777888899999999887543322111 11122233344444444799999998887776654
No 413
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=25.60 E-value=62 Score=30.25 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|..+++
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5689999987 79999998888763
No 414
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.59 E-value=86 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|-|.| ||||+-.+|..++
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999998 7999999997554
No 415
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=25.59 E-value=4.9e+02 Score=29.09 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 402 TERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
.-+..-++..+.+.+.++..+++||+++.....-.++.+-..++.--.+|+=.+...+.-+.|.+|.+.|..-.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvN 518 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVAMTGDGTN 518 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEEEECCCcc
Confidence 33455566777888888999999999976544433333312343334566655555554456788888887433
No 416
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.45 E-value=1.9e+02 Score=29.02 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=43.1
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccH
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRF 429 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~ 429 (487)
..+.|+|| --.+-.++..+.+.+++.. .. .+.++.. .|-.+....+.+.+...+..+|+|++|..-+
T Consensus 219 k~VIIVDD-Ii~TG~Tl~~aa~~Lk~~G-A~-~V~~~at---Hglf~~~a~~~l~~~~~~~~i~~iv~Tntip 285 (332)
T PRK00553 219 KNCLIVDD-MIDTGGTVIAAAKLLKKQK-AK-KVCVMAT---HGLFNKNAIQLFDEAFKKKLIDKLFVSNSIP 285 (332)
T ss_pred CEEEEEec-cccchHHHHHHHHHHHHcC-Cc-EEEEEEE---eeecCchHHHHHHhccccCCCCEEEEeCCcc
Confidence 46778888 7789999999999998755 33 3433322 2444444444443333344699999986543
No 417
>PRK13975 thymidylate kinase; Provisional
Probab=25.41 E-value=72 Score=28.82 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALE 155 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~ 155 (487)
.+|.|.|. .||||.+.+|+.-|+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788886 589999999999993
No 418
>PRK04296 thymidine kinase; Provisional
Probab=25.26 E-value=1.2e+02 Score=27.68 Aligned_cols=31 Identities=32% Similarity=0.286 Sum_probs=19.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.++-|||. .||||....+..-+...|.++..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i 35 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLV 35 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 46789998 55665554444444456777753
No 419
>PRK09213 pur operon repressor; Provisional
Probab=25.23 E-value=58 Score=31.72 Aligned_cols=65 Identities=26% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcC---------C-CCCCCceeEE-------eecCCeEEEEecCCCCHHHHHHHHHHHH
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSN---------F-SPVQMRSELL-------VSRSGIKIVNDAYNANPISTRAAIDLLK 381 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~---------~-~~~~gR~e~~-------~~~~~~~ii~Dsya~np~s~~~~l~~l~ 381 (487)
+..|.++|..||+|.--+++.-+. | .+..+|-|.+ ..+..+.|+|| .-.+-.++.++++.++
T Consensus 142 IplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDD-v~~TGgTi~a~i~Ll~ 220 (271)
T PRK09213 142 IPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDD-FMKAGGTINGMISLLK 220 (271)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEee-ecccCHhHHHHHHHHH
Confidence 557788888899885433332111 0 1223444443 23467889999 8899999999999998
Q ss_pred ccc
Q 011395 382 DIA 384 (487)
Q Consensus 382 ~~~ 384 (487)
+..
T Consensus 221 e~G 223 (271)
T PRK09213 221 EFD 223 (271)
T ss_pred HCC
Confidence 854
No 420
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=25.20 E-value=1.2e+02 Score=28.96 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.6
Q ss_pred CCCCcEEEEeC--CCChHhHHHHHHHH
Q 011395 129 RFSGVLVGVTG--SVGKSTTKSMIALA 153 (487)
Q Consensus 129 ~~~~~vI~VTG--TnGKTTT~~ml~~i 153 (487)
...+|.|+|.| +.||||+.+.|...
T Consensus 23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 23 DLDLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence 45788999999 67999998887764
No 421
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=25.15 E-value=5.7e+02 Score=24.80 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=10.2
Q ss_pred CEEEEecCCCCcHHHHHH
Q 011395 465 DVVLVKGSRAMQMEKVVD 482 (487)
Q Consensus 465 d~vLv~GSr~~~~e~~~~ 482 (487)
.+|.+..+....+-++.+
T Consensus 206 ~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 206 KVIAITDSADSPLAKLAD 223 (281)
T ss_pred cEEEEcCCCCCchhhhhc
Confidence 456666666655555543
No 422
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.07 E-value=6.3e+02 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=21.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhC--CCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESL--GVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~--g~~v~ 162 (487)
..+|+++|- .|||||...|+..+... +.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVa 384 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVA 384 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceE
Confidence 567888763 58999999988876443 34553
No 423
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=24.99 E-value=69 Score=29.40 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 011395 134 LVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+++|+|.| ||||+.+.|..++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 78899998 7999999998888
No 424
>PRK06197 short chain dehydrogenase; Provisional
Probab=24.97 E-value=2.2e+02 Score=27.77 Aligned_cols=33 Identities=30% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+...++|.|||.+| -.-.-++..|.+.|.++..
T Consensus 13 ~~~~k~vlItGas~--gIG~~~a~~l~~~G~~vi~ 45 (306)
T PRK06197 13 DQSGRVAVVTGANT--GLGYETAAALAAKGAHVVL 45 (306)
T ss_pred cCCCCEEEEcCCCC--cHHHHHHHHHHHCCCEEEE
Confidence 44567999999887 3334444444477888754
No 425
>PRK05854 short chain dehydrogenase; Provisional
Probab=24.87 E-value=2.1e+02 Score=28.09 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhh
Q 011395 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILEL 203 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~ 203 (487)
..+.+++.|||.+| -.-.-++..|-+.|.+|.....+..........+.+...+.++.+++++.....++..+
T Consensus 11 ~l~gk~~lITGas~--GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 11 DLSGKRAVVTGASD--GLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred ccCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 34467899999885 44444455454788887643332110000011121222234566667766665555443
No 426
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.82 E-value=3.4e+02 Score=26.77 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEE-EEEC------ccHHHHHHHhhhhc-
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI-GLVG------DRFRAAAENMNLIK- 440 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~v-i~~g------~~~~~i~~~~~~~~- 440 (487)
|.+++++.++.+-+.. -.-+++.|...|.-..+.+.+.++.+.+.+....++ ++.| +++-++++..++.+
T Consensus 23 D~~a~~~lv~~li~~G--v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 23 DEEALRRLVEFLIAAG--VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Q ss_pred -----CCeEEEECCHHHHHHHHHhhCCCCCE-EEE
Q 011395 441 -----TDYIVVTNDAEILSQKIVKRLKSNDV-VLV 469 (487)
Q Consensus 441 -----~~~~~~~~d~~~ai~~l~~~~~~~d~-vLv 469 (487)
-..+++-++.++..++....+..-|+ |++
T Consensus 101 d~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvil 135 (299)
T COG0329 101 DGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVIL 135 (299)
T ss_pred CEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEE
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=24.62 E-value=54 Score=31.40 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|..+++
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999997 89999999998774
No 428
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=24.59 E-value=53 Score=28.77 Aligned_cols=19 Identities=42% Similarity=0.426 Sum_probs=14.9
Q ss_pred EEeCC--CChHhHHHHHHHHH
Q 011395 136 GVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 136 ~VTGT--nGKTTT~~ml~~iL 154 (487)
.++|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34454 39999999999888
No 429
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=24.58 E-value=83 Score=29.61 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+.+|.|-| ||||+..+|..+|
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l 47 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVL 47 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999998 7999999999887
No 430
>PRK13947 shikimate kinase; Provisional
Probab=24.57 E-value=80 Score=27.78 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=17.1
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 011395 134 LVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL 154 (487)
.|.++| -.||||+..+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 356666 469999999999998
No 431
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.50 E-value=8.2e+02 Score=25.68 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCCC----HHHHHHHHHHHHccccCCcEEEE
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNAN----PISTRAAIDLLKDIACNGKRVVI 392 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya~n----p~s~~~~l~~l~~~~~~~~~i~V 392 (487)
--+|-.+|..||++...+ .+..|.-=+-..++... +..+.||-. .... --.+--+++++++.. .+++++|
T Consensus 129 ~~LA~~IA~~Lg~~l~~~--~~~rFpDGE~~Vri~e~VrG~dV~IVqS-~~~pvNd~LmELLllidAlr~ag-AkrItlV 204 (439)
T PTZ00145 129 PLLSKNIADHLGTILGRV--HLKRFADGEVSMQFLESIRGKDVYIIQP-TCPPVNENLIELLLMISTCRRAS-AKKITAV 204 (439)
T ss_pred HHHHHHHHHHhCCCceee--EEEECCCCCEEEEECCCcCCCeEEEEec-CCCCCcHHHHHHHHHHHHHHHhc-cCeEEEE
Confidence 345667777889886655 35667542333333222 233444444 3222 233444455666554 5678888
Q ss_pred EcCCCCCCcc------cHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHh
Q 011395 393 LGDMLELGST------ERESHEKILSYCCDACIDLIGLVGDRFRAAAENM 436 (487)
Q Consensus 393 lg~m~e~G~~------~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~ 436 (487)
+--|.-.-.+ ..---+.+++.+...++|+|+++......+..-+
T Consensus 205 iPYl~YaRQDR~~~~gepIsak~vA~lL~~~G~d~VitvDlHs~~i~~fF 254 (439)
T PTZ00145 205 IPYYGYARQDRKLSSRVPISAADVARMIEAMGVDRVVAIDLHSGQIQGFF 254 (439)
T ss_pred eecccchheecccCCCCChhHHHHHHHHHHcCCCeEEEEecChHHHHhhc
Confidence 7543211000 0112346788888878999999977665544433
No 432
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=24.44 E-value=56 Score=30.29 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+.+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999997 89999999988774
No 433
>PRK13976 thymidylate kinase; Provisional
Probab=24.38 E-value=78 Score=29.43 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.9
Q ss_pred CChHhHHHHHHHHHHhC-C-CceE
Q 011395 141 VGKSTTKSMIALALESL-G-VNVF 162 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~-g-~~v~ 162 (487)
.||||.+.+|+..|+.. | .++.
T Consensus 11 sGKsTq~~~L~~~L~~~~g~~~v~ 34 (209)
T PRK13976 11 SGKTTQSRLLAEYLSDIYGENNVV 34 (209)
T ss_pred CCHHHHHHHHHHHHHHhcCCcceE
Confidence 59999999999999765 4 4554
No 434
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.35 E-value=52 Score=31.95 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||+..+|.-++.
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999998 79999999988774
No 435
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=24.34 E-value=86 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
...+++|.|.| ||||..+.|...|
T Consensus 21 ~~g~~~i~G~NGsGKTTLl~ai~~~l 46 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999998 7999999988877
No 436
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.26 E-value=2.8e+02 Score=24.47 Aligned_cols=74 Identities=16% Similarity=0.040 Sum_probs=46.5
Q ss_pred ccccCCcEEEEEcCCCCCCcccH-------HHHHHHHHHHHHcCCCEEEEECccHHHHHHHh-hhhc-CCeEEEECCHHH
Q 011395 382 DIACNGKRVVILGDMLELGSTER-------ESHEKILSYCCDACIDLIGLVGDRFRAAAENM-NLIK-TDYIVVTNDAEI 452 (487)
Q Consensus 382 ~~~~~~~~i~Vlg~m~e~G~~~~-------~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~-~~~~-~~~~~~~~d~~~ 452 (487)
.++ .++++++||- +|..+. -.+.++...+...++|.|+++.-+-.....+. +..+ ..++.+++|-..
T Consensus 33 ~lf-~gKkVvlf~l---PGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~~I~fi~Dg~g 108 (165)
T COG0678 33 DLF-KGKKVVLFSL---PGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNG 108 (165)
T ss_pred Hhc-CCCEEEEEeC---CCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCccEEEecCCCc
Confidence 344 6889999986 666542 12345666666778999999876544433333 3333 237888888776
Q ss_pred HHHHHHh
Q 011395 453 LSQKIVK 459 (487)
Q Consensus 453 ai~~l~~ 459 (487)
....++.
T Consensus 109 eFTk~~G 115 (165)
T COG0678 109 EFTKAMG 115 (165)
T ss_pred hhhhhcC
Confidence 6665543
No 437
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=24.16 E-value=2.5e+02 Score=24.26 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEE
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVT 447 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~ 447 (487)
||+.|.+..++..+-...-+-+.+|+.-- .|.-..+-..+.-+.+-+++ ..+.+..+ -++-.+-++ +..+...
T Consensus 8 HN~~S~~rv~e~ariaygfg~k~lV~tka--~g~AAQsGIp~~~kla~k~G-~~vlvf~d-L~DAlevL~---P~v~ll~ 80 (147)
T COG4080 8 HNVSSVQRVLEFARIAYGFGAKRLVLTKA--KGSAAQSGIPEVLKLAFKLG-KPVLVFPD-LDDALEVLR---PDVTLLV 80 (147)
T ss_pred ecCCchHHHHHHHHHHcccCccEEEEEec--ccHhhhhccHHHHHHHHHhC-CcEEEehh-HHHHHHhcC---CceEEEe
Confidence 89999999999887544334444444321 33334444566777777775 34444333 222222221 2223333
Q ss_pred CCHHHHHHHHH--hhCCCCCEEEEecCCCCcHH
Q 011395 448 NDAEILSQKIV--KRLKSNDVVLVKGSRAMQME 478 (487)
Q Consensus 448 ~d~~~ai~~l~--~~~~~~d~vLv~GSr~~~~e 478 (487)
.+...+.+.+. +..+..+.|++.|.+.. |+
T Consensus 81 ~~~~~~ek~~dp~e~ie~~vliVf~ga~~g-l~ 112 (147)
T COG4080 81 GSASEGEKKLDPNEKIEGRVLIVFSGAEPG-LT 112 (147)
T ss_pred cCcccccccCCccccccceEEEEEecCCCC-cC
Confidence 34444444332 12222456667766543 44
No 438
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=24.16 E-value=60 Score=29.65 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+-++.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999997 79999999988773
No 439
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=24.14 E-value=1.1e+02 Score=27.97 Aligned_cols=21 Identities=48% Similarity=0.469 Sum_probs=15.1
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 011395 134 LVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+|.|+|.. ||||+...+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57788775 5999988655555
No 440
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=24.09 E-value=5.1e+02 Score=24.04 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=50.7
Q ss_pred ceeEEeec--CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEEC
Q 011395 349 RSELLVSR--SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVG 426 (487)
Q Consensus 349 R~e~~~~~--~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g 426 (487)
|++.+... +.+.+|-|.+ .|.++++++++.++-.. ....++.+||+...|..+.+. .+.+.+. ..+.+-|
T Consensus 5 ~~~~~~~~~~~ri~visDiH-g~~~~l~~~l~~~~~~~-~~d~l~~lGD~vdrG~~~~~~----l~~l~~~--~~~~v~G 76 (218)
T PRK09968 5 RYQKINAHHYRHIWVVGDIH-GEYQLLQSRLHQLSFCP-ETDLLISVGDNIDRGPESLNV----LRLLNQP--WFISVKG 76 (218)
T ss_pred ceeeccCCCCCeEEEEEecc-CCHHHHHHHHHhcCCCC-CCCEEEECCCCcCCCcCHHHH----HHHHhhC--CcEEEEC
Confidence 44444431 3577899954 58999999998874222 345788889998888776543 3444432 3456778
Q ss_pred ccHHHHHHHh
Q 011395 427 DRFRAAAENM 436 (487)
Q Consensus 427 ~~~~~i~~~~ 436 (487)
..-..+.+.+
T Consensus 77 NHE~~~~~~~ 86 (218)
T PRK09968 77 NHEAMALDAF 86 (218)
T ss_pred chHHHHHHHH
Confidence 7665555443
No 441
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=24.05 E-value=6.2e+02 Score=25.05 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=62.6
Q ss_pred CceeEEeec-CCeEEEEecCCCCHHHHHHHHHHH---Hccc-cCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEE
Q 011395 348 MRSELLVSR-SGIKIVNDAYNANPISTRAAIDLL---KDIA-CNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422 (487)
Q Consensus 348 gR~e~~~~~-~~~~ii~Dsya~np~s~~~~l~~l---~~~~-~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~v 422 (487)
|-+-..... +.+..|.| +....+++.+.-+. +.+. +..+.++|||+ |.....-.+.+.. -..+.+|
T Consensus 86 g~i~L~D~~TG~p~ai~d--g~~lT~~RTaA~sala~~~La~~~~~~l~viGa----G~QA~~~~~a~~~---~~~i~~v 156 (313)
T PF02423_consen 86 GVILLFDPETGEPLAIMD--GTWLTALRTAAVSALAARYLARPDARTLGVIGA----GVQARWHLRALAA---VRPIKEV 156 (313)
T ss_dssp EEEEEEETTT--EEEEEE--SHHHHHHHHHHHHHHHHHHHS-TT--EEEEE------SHHHHHHHHHHHH---HS--SEE
T ss_pred EEEEEEECCCCCEEEEec--ccchhhhHHHHHHHHHHHHhCcCCCceEEEECC----CHHHHHHHHHHHH---hCCceEE
Confidence 344444432 34556778 45577777655432 2222 24578999994 6554433333322 2348999
Q ss_pred EEECccHH---HHHHHhhhhcCCeEEEECCHHHHHHHH-----------------HhhCCCCCEEEEecCCCCcHHH
Q 011395 423 GLVGDRFR---AAAENMNLIKTDYIVVTNDAEILSQKI-----------------VKRLKSNDVVLVKGSRAMQMEK 479 (487)
Q Consensus 423 i~~g~~~~---~i~~~~~~~~~~~~~~~~d~~~ai~~l-----------------~~~~~~~d~vLv~GSr~~~~e~ 479 (487)
.+++.++. .+++.+.. ....+...+|.++|++.+ .+.+++|-.|...||....+.+
T Consensus 157 ~v~~r~~~~~~~~~~~~~~-~~~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi~~iGs~~~~~~E 232 (313)
T PF02423_consen 157 RVYSRSPERAEAFAARLRD-LGVPVVAVDSAEEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHINAIGSYTPGMRE 232 (313)
T ss_dssp EEE-SSHHHHHHHHHHHHC-CCTCEEEESSHHHHHTTSSEEEE----SSEEESB-GGGS-TT-EEEE-S-SSTTBES
T ss_pred EEEccChhHHHHHHHhhcc-ccccceeccchhhhcccCCEEEEccCCCCCCccccHHHcCCCcEEEEecCCCCchhh
Confidence 99998764 46666655 234577788998887542 1344566666666765554433
No 442
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=24.03 E-value=3.6e+02 Score=26.98 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc---HHHHHHHhhhhc
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR---FRAAAENMNLIK 440 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~---~~~i~~~~~~~~ 440 (487)
+|+.++++++.++ +++.+|.+. +.+.++++++.+.++++..+..+..+ .+.+...+.+.|
T Consensus 138 D~evleaale~~~-----g~~pLInSa-------t~en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~G 200 (319)
T PRK04452 138 DAEVLEKVAEAAE-----GERCLLGSA-------EEDNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELG 200 (319)
T ss_pred CHHHHHHHHHHhC-----CCCCEEEEC-------CHHHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcC
Confidence 7999999999884 344555543 34458889999999876545444333 233444444443
No 443
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=24.02 E-value=73 Score=29.60 Aligned_cols=26 Identities=42% Similarity=0.776 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+||+||. .||||+. +.|++.|..+.
T Consensus 2 ~iVGLTGgiatGKStVs----~~f~~~G~~vI 29 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVS----QVFKALGIPVI 29 (225)
T ss_pred eEEEeecccccChHHHH----HHHHHcCCcEe
Confidence 47999997 5898875 55667788764
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.99 E-value=52 Score=30.52 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|..+++
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999987 59999988887773
No 445
>PRK13946 shikimate kinase; Provisional
Probab=23.89 E-value=83 Score=28.37 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=18.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHH
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL 154 (487)
.+.|.++| -.||||+..+|+.-|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34677777 369999999999999
No 446
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=23.82 E-value=2.2e+02 Score=28.08 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHhh--cCCCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARN--SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~--p~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+..+.=.++|...|. ...+..+|+|+|++ ||||....+...|
T Consensus 83 ~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 83 DVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444445543222 13457899999986 6888877777776
No 447
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=23.75 E-value=74 Score=27.85 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+|+|+|. .||||++..|+..|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 6888887 47999999998877
No 448
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=23.73 E-value=86 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=18.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+++|+|.+ ||||....|+.+|
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 467777775 7999999999998
No 449
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=23.71 E-value=3.5e+02 Score=28.14 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=63.5
Q ss_pred eEEeeCCccccCCCCEEEEecCCcCCcccch------H-HhhhcCCceEEEeccccCC---C----------CccEEEEc
Q 011395 48 IICTDTRILAPNKNQWFFAITGQHFDAHEFI------S-PELYGKGCVGVIGNQVCNN---W----------DKGFVQVE 107 (487)
Q Consensus 48 ~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~------~-~A~~~~Ga~~~v~~~~~~~---~----------~~~~i~V~ 107 (487)
..-++++..++.+|-+||- .|+.-|=.-|+ - .|-+ .+|..|.+++..-. | .+.++
T Consensus 68 Rylin~~fw~~g~gPIffY-tGNEGdie~Fa~ntGFm~D~Ap~-~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyL--- 142 (492)
T KOG2183|consen 68 RYLINDDFWKKGEGPIFFY-TGNEGDIEWFANNTGFMWDLAPE-LKALLVFAEHRYYGESLPFGSQSYKDARHLGYL--- 142 (492)
T ss_pred EEEEecccccCCCCceEEE-eCCcccHHHHHhccchHHhhhHh-hCceEEEeehhccccCCCCcchhccChhhhccc---
Confidence 5567888888755678877 46554433333 2 3556 89999999875321 1 23455
Q ss_pred CCCCccHHHHHHHHHHHH---hhcC---CCCcEEEEeCCCChHhHHHHHHHHHHhCCCc
Q 011395 108 GNGNVNTLNSLVNMACYA---RNSR---FSGVLVGVTGSVGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 108 ~~~~~d~~~aL~~la~~~---~~p~---~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~ 160 (487)
.+.+||+..|... ++ . ...++|++-||-|. ||++-+ ..+|.
T Consensus 143 -----tseQALADfA~ll~~lK~-~~~a~~~pvIafGGSYGG-----MLaAWf-RlKYP 189 (492)
T KOG2183|consen 143 -----TSEQALADFAELLTFLKR-DLSAEASPVIAFGGSYGG-----MLAAWF-RLKYP 189 (492)
T ss_pred -----cHHHHHHHHHHHHHHHhh-ccccccCcEEEecCchhh-----HHHHHH-HhcCh
Confidence 4568888877633 33 2 34799999999997 999999 44554
No 450
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=23.67 E-value=89 Score=29.07 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=21.3
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-.||||++.-++..+.+.|++|.
T Consensus 7 ~~g~Gkt~~~~~la~~~a~~g~~~~ 31 (217)
T cd02035 7 KGGVGKTTIAAATAVRLAEEGKKVL 31 (217)
T ss_pred CCCchHHHHHHHHHHHHHHCCCcEE
Confidence 4557999999999999988888875
No 451
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.62 E-value=1.2e+02 Score=31.56 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=22.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH-HhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL-ESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL-~~~g~~v~ 162 (487)
..+|+++|. .|||||+.-|+.-+ ...|.+|.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~ 256 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS 256 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 356777775 48999999998644 36677774
No 452
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=23.58 E-value=2.2e+02 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=17.6
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 129 RFSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
....++|+++|.. ||||+..-+.+-+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5568999999975 5666555544444
No 453
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.58 E-value=62 Score=30.01 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+-+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999997 79999999988774
No 454
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.55 E-value=66 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+.++.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5689999997 69999999988774
No 455
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.47 E-value=60 Score=31.70 Aligned_cols=30 Identities=40% Similarity=0.451 Sum_probs=24.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
..++|.-|-| |||||-.||.-++.-.+.+|
T Consensus 50 G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 4589999988 59999999999996665554
No 456
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=23.38 E-value=2e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.452 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 448 NDAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 448 ~d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
+|.++..+.+...+.+.|+|+..|--|.
T Consensus 41 Dd~~~i~~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 41 DDPDAIKEALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEEESSSSS
T ss_pred CCHHHHHHHHHhhhccCCEEEEcCCcCc
Confidence 4455545555455566799999985433
No 457
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=23.38 E-value=63 Score=29.67 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+.+++
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999987 69999988888774
No 458
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=23.37 E-value=6.4e+02 Score=24.18 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=25.3
Q ss_pred CCC-ceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHcc----ccCCcEEEEEcC
Q 011395 346 VQM-RSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDI----ACNGKRVVILGD 395 (487)
Q Consensus 346 ~~g-R~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~----~~~~~~i~Vlg~ 395 (487)
+.| +|..........|+.- ...=-.-+...++.+... ...++.++++|.
T Consensus 103 p~G~~f~l~~~~~~~~vlIA-gGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~ 156 (267)
T cd06182 103 RPAPSFRLPKDPTTPIIMVG-PGTGIAPFRGFLQERAALRANGKARGPAWLFFGC 156 (267)
T ss_pred ecCCcccCCCCCCCCEEEEe-cCccHHHHHHHHHHHHHhhhccccCCCEEEEEeC
Confidence 344 5554322123334444 444566677777766542 113567777775
No 459
>PRK05568 flavodoxin; Provisional
Probab=23.34 E-value=2.1e+02 Score=24.28 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcC
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC 418 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~ 418 (487)
|..++..++.+.... .+|++++||. .|.......+.+.+.+...+
T Consensus 66 ~~~~~~f~~~~~~~~-~~k~~~~f~t---~G~~~~~~~~~~~~~l~~~g 110 (142)
T PRK05568 66 EGEMEPFVESISSLV-KGKKLVLFGS---YGWGDGEWMRDWVERMEGYG 110 (142)
T ss_pred chhHHHHHHHhhhhh-CCCEEEEEEc---cCCCCChHHHHHHHHHHHCC
Confidence 367888888875444 5788999986 34333344555666666544
No 460
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=23.31 E-value=62 Score=30.49 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|.-+++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999997 79999998888773
No 461
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=23.29 E-value=1.1e+02 Score=30.64 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=18.9
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL~ 155 (487)
++-+.|.+|| ||||.+..++..|.
T Consensus 66 ~ilL~G~pGt-GKTtla~~lA~~l~ 89 (327)
T TIGR01650 66 RVMVQGYHGT-GKSTHIEQIAARLN 89 (327)
T ss_pred cEEEEeCCCC-hHHHHHHHHHHHHC
Confidence 3555666665 89999999999993
No 462
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.29 E-value=1.4e+02 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHhhCCCCCEEEEecC--CCCcHHHHHH
Q 011395 448 NDAEILSQKIVKRLKSNDVVLVKGS--RAMQMEKVVD 482 (487)
Q Consensus 448 ~d~~~ai~~l~~~~~~~d~vLv~GS--r~~~~e~~~~ 482 (487)
.+.++.++.+...++++|+|++.|| ++..-+-+.+
T Consensus 114 ~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~ 150 (310)
T COG1105 114 AELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAE 150 (310)
T ss_pred HHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHH
Confidence 3567788888888999999999999 4554444333
No 463
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=23.28 E-value=4.5e+02 Score=22.39 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=41.2
Q ss_pred cEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc--H---HHHHHHhhhhcCCeEEEE----C---CHHHHHH
Q 011395 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR--F---RAAAENMNLIKTDYIVVT----N---DAEILSQ 455 (487)
Q Consensus 388 ~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~--~---~~i~~~~~~~~~~~~~~~----~---d~~~ai~ 455 (487)
|.++|.|+ +...=+++++.+.+.+...|++++.+ . ..+.+.+...+ .++..+ . +.+.+++
T Consensus 1 k~~lItGa-------~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~ 72 (167)
T PF00106_consen 1 KTVLITGA-------SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIE 72 (167)
T ss_dssp EEEEEETT-------TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHH
T ss_pred CEEEEECC-------CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccc
Confidence 35778875 22344566677666656788888877 2 23445554333 334333 2 3444555
Q ss_pred HHHhhCCCCCEEEEe
Q 011395 456 KIVKRLKSNDVVLVK 470 (487)
Q Consensus 456 ~l~~~~~~~d~vLv~ 470 (487)
.+.+...+=|+++..
T Consensus 73 ~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 73 EVIKRFGPLDILINN 87 (167)
T ss_dssp HHHHHHSSESEEEEE
T ss_pred ccccccccccccccc
Confidence 555443455766655
No 464
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=23.20 E-value=49 Score=29.93 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 011395 134 LVGVTG--SVGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTG--TnGKTTT~~ml~~iL 154 (487)
+|-++| |.||||++..|...|
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~ 25 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERL 25 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhC
Confidence 555555 789999999999988
No 465
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=23.19 E-value=3.7e+02 Score=26.49 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=48.9
Q ss_pred cEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEE
Q 011395 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVV 467 (487)
Q Consensus 388 ~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~v 467 (487)
-+++|+|+ |....+.|......+... +..+.++..++....+..+..+ .. ..+.|.+++++.- +=|+|
T Consensus 4 irvgiiG~----G~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~-~~-~~~~~~~~ll~~~-----~iD~V 71 (342)
T COG0673 4 IRVGIIGA----GGIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFG-IA-KAYTDLEELLADP-----DIDAV 71 (342)
T ss_pred eEEEEEcc----cHHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcC-CC-cccCCHHHHhcCC-----CCCEE
Confidence 47899994 645444444333332211 2344455555554333333222 11 4677777765431 13889
Q ss_pred EEecCCCCcHHHHHHHHH
Q 011395 468 LVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 468 Lv~GSr~~~~e~~~~~l~ 485 (487)
.|.-....+.+-....|+
T Consensus 72 ~Iatp~~~H~e~~~~AL~ 89 (342)
T COG0673 72 YIATPNALHAELALAALE 89 (342)
T ss_pred EEcCCChhhHHHHHHHHh
Confidence 999888888888877775
No 466
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=23.03 E-value=6.9e+02 Score=24.78 Aligned_cols=8 Identities=13% Similarity=0.244 Sum_probs=3.4
Q ss_pred CCcHHHHH
Q 011395 474 AMQMEKVV 481 (487)
Q Consensus 474 ~~~~e~~~ 481 (487)
+..+++-.
T Consensus 215 g~pLe~Q~ 222 (304)
T cd07421 215 SNSVEEQL 222 (304)
T ss_pred CCChHHhh
Confidence 44444433
No 467
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.02 E-value=2.2e+02 Score=23.56 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred cEEEEeCCC-ChHhHHHHHHHHHHhCCCceEecCCCCCCcchhh--hHhhcCCCCCcEEEEecc
Q 011395 133 VLVGVTGSV-GKSTTKSMIALALESLGVNVFQSYGNWNNRVGVA--LSLIGIDRAVDIAVLEMG 193 (487)
Q Consensus 133 ~vI~VTGTn-GKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p--~~l~~~~~~~~~~V~E~g 193 (487)
+.|+|-|-+ -+.+-.+.+..-|++.|++++...-....-.|.+ .++.+.+...|.+++=+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC
Confidence 357777743 3366777788888788888764322222222322 123333456666666653
No 468
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=22.97 E-value=1.1e+02 Score=28.43 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=20.3
Q ss_pred cEEEEeCCC--ChHhHHHHHH--HHHHhCCCce
Q 011395 133 VLVGVTGSV--GKSTTKSMIA--LALESLGVNV 161 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~--~iL~~~g~~v 161 (487)
+++.|||.| ||||.-..+. .+|...|.-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 689999998 5888877776 4454455443
No 469
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.87 E-value=66 Score=31.30 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..+++|.|-| ||||+..+|.-+++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGLLEA 59 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6789999997 899999999888843
No 470
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=22.79 E-value=6.6e+02 Score=25.85 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHc--------------------CCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecC---------
Q 011395 318 NACAAAAVATLF--------------------GVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAY--------- 366 (487)
Q Consensus 318 NalaAia~a~~l--------------------g~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsy--------- 366 (487)
|-..|-.+|..| |++.....--+..|..=+-..++... +..+.||-...
T Consensus 17 ~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs~~~~~v~~~~~ 96 (382)
T PRK06827 17 CRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQDVGNYSVTYNMF 96 (382)
T ss_pred CHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEecCCccccccccc
Q ss_pred --------CCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHH---------HHHHHHHHHHcCCCEEEEECccH
Q 011395 367 --------NANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERES---------HEKILSYCCDACIDLIGLVGDRF 429 (487)
Q Consensus 367 --------a~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~---------~~~~~~~l~~~~~d~vi~~g~~~ 429 (487)
|.+--.+--++++++ .. .+++++|+--| .++++. -+-+++.+...++|+|+++....
T Consensus 97 ~~~~~~p~nd~lmeLll~idalr-ag-A~rIt~ViPY~----~YaRQDr~~~~e~itak~vA~lL~~~G~d~vitvDlHs 170 (382)
T PRK06827 97 GEKNHMSPDDHFQDLKRTIDAIR-GK-ARRITVIMPFL----YESRQHKRKGRESLDCALALQELEELGVDNIITFDAHD 170 (382)
T ss_pred ccccCCCCcHHHHHHHHHHHHHh-cC-CCeEEEEeecc----cccccccccCCCCccHHHHHHHHHHcCCCeEEEecCCh
Q ss_pred HHHHHHhhhhcC-CeEEEECCHHHHHHHHHhhCCC-----CCEEEEe
Q 011395 430 RAAAENMNLIKT-DYIVVTNDAEILSQKIVKRLKS-----NDVVLVK 470 (487)
Q Consensus 430 ~~i~~~~~~~~~-~~~~~~~d~~~ai~~l~~~~~~-----~d~vLv~ 470 (487)
..+..-+ . ..+.........++++.+...+ .+.+++.
T Consensus 171 ~~i~~~F----~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVs 213 (382)
T PRK06827 171 PRIENAI----PLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVIS 213 (382)
T ss_pred HHhcccC----CCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEE
No 471
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.71 E-value=64 Score=30.77 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|+.+++
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5789999987 79999999988773
No 472
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=22.70 E-value=61 Score=29.68 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|.|.| ||||...+|..++.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6789999986 69999888887763
No 473
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=22.64 E-value=4.1e+02 Score=21.39 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHH
Q 011395 450 AEILSQKIVKRLKSNDVVLVKGSRA-MQMEKVVD 482 (487)
Q Consensus 450 ~~~ai~~l~~~~~~~d~vLv~GSr~-~~~e~~~~ 482 (487)
..+.++........--+|.+-|.++ ..+.++++
T Consensus 58 i~e~i~~~~~~~~~P~ii~IP~~~~~~~i~~~v~ 91 (100)
T PRK02228 58 LPRRLRRTLEESVEPTVVTLGGGGGSGGLREKIK 91 (100)
T ss_pred hHHHHHHHHhcCCCCEEEEECCCccchHHHHHHH
Confidence 4455555444333334555655443 34454444
No 474
>PRK10908 cell division protein FtsE; Provisional
Probab=22.61 E-value=59 Score=30.24 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|.|-| ||||...+|+-++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6799999997 89999999987773
No 475
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=22.58 E-value=65 Score=27.80 Aligned_cols=24 Identities=46% Similarity=0.567 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|..+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5689999986 79999999888774
No 476
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=1.1e+02 Score=31.19 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=17.8
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhC
Q 011395 134 LVGVTGSVGKSTTKSMIALALESL 157 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL~~~ 157 (487)
+.|-||| |||.|..++..-|+..
T Consensus 47 iyG~~GT-GKT~~~~~v~~~l~~~ 69 (366)
T COG1474 47 IYGPTGT-GKTATVKFVMEELEES 69 (366)
T ss_pred EECCCCC-CHhHHHHHHHHHHHhh
Confidence 4455554 8999999999999765
No 477
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.58 E-value=77 Score=26.83 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=16.5
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 011395 134 LVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+|.|+|.. ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36677764 7999999998877
No 478
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=22.57 E-value=66 Score=29.61 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|..+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999987 79999888887773
No 479
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.51 E-value=74 Score=29.83 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|.| ||||...+|.-++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5789999997 79999999998874
No 480
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.51 E-value=4.1e+02 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECc
Q 011395 387 GKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGD 427 (487)
Q Consensus 387 ~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~ 427 (487)
+-.|+|-|. .|.-...-...|..++.+....+|+++-+
T Consensus 125 ~GLILVTGp---TGSGKSTTlAamId~iN~~~~~HIlTIED 162 (353)
T COG2805 125 RGLILVTGP---TGSGKSTTLAAMIDYINKHKAKHILTIED 162 (353)
T ss_pred CceEEEeCC---CCCcHHHHHHHHHHHHhccCCcceEEecC
Confidence 558999886 45443444567888888875666665533
No 481
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=22.46 E-value=96 Score=27.99 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=19.1
Q ss_pred CchhhHHHHHHHHHHHHHcCCC
Q 011395 311 PGLHLAINACAAAAVATLFGVS 332 (487)
Q Consensus 311 ~G~~nv~NalaAia~a~~lg~~ 332 (487)
..+||-.|-++|++.|..+|.+
T Consensus 143 i~eHqe~nR~aA~a~A~~~gat 164 (189)
T COG2019 143 IREHQEMNRAAAMAYAILLGAT 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhCCe
Confidence 3589999999999999998854
No 482
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.40 E-value=1.1e+02 Score=29.09 Aligned_cols=29 Identities=34% Similarity=0.351 Sum_probs=25.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCc
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~ 160 (487)
+|.|.||| ..||||-+.-|...|++.+.|
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 47888999 689999999999999877744
No 483
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=22.40 E-value=6.7e+02 Score=23.72 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=49.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHcc-------ccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHH
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDI-------ACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRA 431 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~-------~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~ 431 (487)
+.+|-|-+ -..+.++++|+.+.-- .+...+++++||+.+.|..+.+..+-+.+... . ...+.+.|..-..
T Consensus 3 ~~vIGDIH-G~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~-~-~~~~~l~GNHE~~ 79 (245)
T PRK13625 3 YDIIGDIH-GCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVE-K-KAAYYVPGNHCNK 79 (245)
T ss_pred eEEEEECc-cCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhh-C-CCEEEEeCccHHH
Confidence 56788844 4788899888876421 01345788999999999888766655544432 2 3566677887655
Q ss_pred HHHHh
Q 011395 432 AAENM 436 (487)
Q Consensus 432 i~~~~ 436 (487)
+...+
T Consensus 80 ~l~~~ 84 (245)
T PRK13625 80 LYRFF 84 (245)
T ss_pred HHHHH
Confidence 55544
No 484
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=22.38 E-value=63 Score=33.83 Aligned_cols=30 Identities=40% Similarity=0.726 Sum_probs=26.5
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.-+-|=||| |||-|-..|+.-|...|..|.
T Consensus 22 GLIaGATGT-GKTvTLqvlAE~fS~~GVPVf 51 (502)
T PF05872_consen 22 GLIAGATGT-GKTVTLQVLAEQFSDAGVPVF 51 (502)
T ss_pred ceeeccCCC-CceehHHHHHHHhhhcCCcEE
Confidence 446788998 999999999999999999885
No 485
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=22.38 E-value=7.4e+02 Score=27.64 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcH
Q 011395 402 TERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQM 477 (487)
Q Consensus 402 ~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~ 477 (487)
.-+..-++..+.+.+.+++.++++|++......-.++.+-..++.--.+++=.+.+.+..+.|..|.+.|..-.+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~NDa 521 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQAEGKLVAMTGDGTNDA 521 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcchH
Confidence 3345556667778888899999999987654444443331233332344555555544445678888888854443
No 486
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=22.28 E-value=71 Score=29.78 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+.+++
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5799999997 79999999988773
No 487
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.08 E-value=56 Score=31.67 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=21.6
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++|+-|- .||||+..+|..+++-....+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~ 71 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEIL 71 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence 345555554 4899999999999954554543
No 488
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=22.04 E-value=1.2e+02 Score=32.53 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=26.4
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.|-||| +-||..|++-|..+|++.|++|.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~ 35 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVT 35 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceE
Confidence 5677887 56999999999999999999984
No 489
>PRK06756 flavodoxin; Provisional
Probab=22.03 E-value=4e+02 Score=22.73 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCC
Q 011395 369 NPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACI 419 (487)
Q Consensus 369 np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~ 419 (487)
-|+.+...++.+......++++++||.............+.+.+.+.+.++
T Consensus 65 ~p~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~ 115 (148)
T PRK06756 65 LPDDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGA 115 (148)
T ss_pred CcHHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCC
Confidence 477788888888654435789999985211001113445566667766653
No 490
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=22.02 E-value=75 Score=29.05 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=20.0
Q ss_pred CcEEEEeCCCC--hHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSVG--KSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL~ 155 (487)
..+++|+|.|| |||...+|.-+++
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 56899999985 9999888888774
No 491
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=21.93 E-value=5e+02 Score=25.64 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=46.7
Q ss_pred EeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHH---HHHcCCCEEEEEC
Q 011395 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSY---CCDACIDLIGLVG 426 (487)
Q Consensus 353 ~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~---l~~~~~d~vi~~g 426 (487)
+...+.+.|+.. |.. +++++.+-+...+.+ ...|-++.+|....+.+...|..+-+. ....+...|+++.
T Consensus 5 ~~~ad~l~IasG-YvS-~~~l~~L~~l~e~~~--~~~I~LivGM~~~eGis~~~~~~~~~L~~~~~~~~~g~vYv~~ 77 (296)
T PF09565_consen 5 IKEADELRIASG-YVS-NDALEELKKLVEEYH--ILKIKLIVGMYYYEGISIPQHNALCKLNDFLQENGIGEVYVVP 77 (296)
T ss_pred cCCCCeEEEEEe-cCC-HHHHHHHHHHHhhCC--CcceEEEEeccccCCcCHHHHHHHHHHHHHhhhcCCceEEEeC
Confidence 333466788888 976 888887766665433 445666666776655677777777666 6666677776653
No 492
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.84 E-value=71 Score=29.27 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|.|.| ||||...+|..++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5689999987 69998888887774
No 493
>PLN02235 ATP citrate (pro-S)-lyase
Probab=21.83 E-value=9.3e+02 Score=25.16 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=56.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHH----ccc-cCCcEEEEEcCCCCCCcccHHHH---HHHHHHHHHcC-----CC-EEEE
Q 011395 359 IKIVNDAYNANPISTRAAIDLLK----DIA-CNGKRVVILGDMLELGSTERESH---EKILSYCCDAC-----ID-LIGL 424 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~----~~~-~~~~~i~Vlg~m~e~G~~~~~~~---~~~~~~l~~~~-----~d-~vi~ 424 (487)
..+.|=..+++++.+..+++.+- +-+ .....+-|+|++..+ +... +.+.+.+.+.. .+ .+++
T Consensus 299 ANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rc----d~VA~tf~GIi~A~~e~~~kl~~~~vpivV 374 (423)
T PLN02235 299 GNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANF----TDVAATFNGIIRALREKESKLKAARMHIFV 374 (423)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccc----hhhhhhhhHHHHHHHHhhhccccCCccEEE
Confidence 44555556678999999999884 222 112246677765433 3333 66777776652 22 2222
Q ss_pred --ECccHHHHHHHhh----hhcCCeEEEEC---CHHHHHHHHHhh
Q 011395 425 --VGDRFRAAAENMN----LIKTDYIVVTN---DAEILSQKIVKR 460 (487)
Q Consensus 425 --~g~~~~~i~~~~~----~~~~~~~~~~~---d~~~ai~~l~~~ 460 (487)
.|.+..+=.+.++ +. .-++..++ +.++|++.+.+.
T Consensus 375 Rl~GtN~eeG~~il~e~~~~~-gl~i~~~~~~~~m~~a~~~av~~ 418 (423)
T PLN02235 375 RRGGPNYQKGLAKMRALGEEI-GVPIEVYGPEATMTGICKQAIDY 418 (423)
T ss_pred ECCCCCHHHHHHHHHHhHHhc-CCcEEEeCCCCCHHHHHHHHHhh
Confidence 2666654332232 22 23577888 999999998764
No 494
>PRK04182 cytidylate kinase; Provisional
Probab=21.83 E-value=83 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+|.|+|. .||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5777776 58999999999887
No 495
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.78 E-value=66 Score=29.56 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+-++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999987 79999999987763
No 496
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.75 E-value=87 Score=28.41 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.2
Q ss_pred CcEEEEeCCCC--hHhHHHHHHHHH
Q 011395 132 GVLVGVTGSVG--KSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL 154 (487)
..+++|+|.|| |||...+|+.++
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999986 888887777543
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=21.70 E-value=65 Score=29.76 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|+|-| ||||...+|+.++.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999997 59999999888774
No 498
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.70 E-value=67 Score=30.14 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
..+++|+|-| ||||...+|+.++..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999997 899999999888843
No 499
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=21.67 E-value=3.1e+02 Score=28.15 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHccccCCcEEEEEcCCCCCCc-ccHHHHHHHHHHHHHcCCCEEEEE----CccHHHHHHHhh
Q 011395 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGS-TERESHEKILSYCCDACIDLIGLV----GDRFRAAAENMN 437 (487)
Q Consensus 371 ~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~-~~~~~~~~~~~~l~~~~~d~vi~~----g~~~~~i~~~~~ 437 (487)
.-+++++.+++.+-..+.+++++.....++. ....-.+.+++.+.++.-..|.+. |+.++.....+.
T Consensus 36 ~RI~a~lpTIk~l~~~ga~Vvl~SHlGRPk~~~~~~SL~pva~~Ls~ll~~~V~f~~d~~g~~a~~~v~~l~ 107 (395)
T COG0126 36 TRIRAALPTIKYLLEKGAKVVLLSHLGRPKEYSDKTSLEPVAKRLSELLGKEVKFVDDCVGPEARQAVAELK 107 (395)
T ss_pred HHHHHhhHHHHHHHhCCCeEEEEecCCCCCCCCCcccHHHHHHHHHHhcCCceEecccccCHHHHHHHhccC
Confidence 5688888888776534535888776433433 222333456666666522344443 333444444443
No 500
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=21.65 E-value=86 Score=30.44 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=19.6
Q ss_pred CCCChHhHHHHHHHHHHhCCCceE
Q 011395 139 GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|--|||||+.=|+..|-..|++|.
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl 32 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVL 32 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CCcccChhhhHHHHHHHhccceee
Confidence 567999999999999989999984
Done!