Query 011395
Match_columns 487
No_of_seqs 282 out of 1875
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gg4_A UDP-N-acetylmuramoylala 100.0 4.8E-85 1.6E-89 682.5 50.1 438 27-485 4-447 (452)
2 2am1_A SP protein, UDP-N-acety 100.0 1.3E-84 4.5E-89 680.1 45.2 437 26-485 2-453 (454)
3 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 5.2E-77 1.8E-81 633.3 40.4 437 15-474 23-505 (535)
4 1e8c_A UDP-N-acetylmuramoylala 100.0 4.2E-75 1.4E-79 614.6 40.6 424 28-473 4-466 (498)
5 3hn7_A UDP-N-acetylmuramate-L- 100.0 5E-56 1.7E-60 470.7 40.0 377 85-486 79-519 (524)
6 1p3d_A UDP-N-acetylmuramate--a 100.0 4.4E-56 1.5E-60 466.9 37.7 375 73-483 68-472 (475)
7 2f00_A UDP-N-acetylmuramate--L 100.0 1.4E-55 4.9E-60 464.6 35.5 374 73-484 69-475 (491)
8 2x5o_A UDP-N-acetylmuramoylala 100.0 5.1E-57 1.7E-61 469.4 22.9 392 46-485 29-437 (439)
9 4hv4_A UDP-N-acetylmuramate--L 100.0 1E-54 3.6E-59 457.6 38.3 358 85-475 80-471 (494)
10 3lk7_A UDP-N-acetylmuramoylala 100.0 1E-53 3.4E-58 446.0 29.7 325 132-486 112-450 (451)
11 1jbw_A Folylpolyglutamate synt 100.0 5E-54 1.7E-58 445.7 23.6 340 113-484 24-423 (428)
12 2vos_A Folylpolyglutamate synt 100.0 5E-52 1.7E-56 436.0 31.6 343 113-475 45-474 (487)
13 1o5z_A Folylpolyglutamate synt 100.0 1.9E-52 6.5E-57 434.8 25.8 331 113-476 37-424 (442)
14 1j6u_A UDP-N-acetylmuramate-al 100.0 1.2E-50 4.1E-55 424.3 38.7 320 132-485 114-455 (469)
15 3nrs_A Dihydrofolate:folylpoly 100.0 9.5E-52 3.3E-56 428.9 29.3 336 114-475 34-427 (437)
16 1w78_A FOLC bifunctional prote 100.0 6.7E-51 2.3E-55 421.6 30.5 332 113-484 34-414 (422)
17 3eag_A UDP-N-acetylmuramate:L- 100.0 1.6E-39 5.4E-44 324.8 24.9 208 132-347 108-325 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.9 5.4E-21 1.9E-25 171.1 14.9 135 333-475 11-150 (163)
19 2g0t_A Conserved hypothetical 90.5 0.85 2.9E-05 44.7 8.9 109 131-239 168-311 (350)
20 3pmo_A UDP-3-O-[3-hydroxymyris 89.8 0.63 2.2E-05 46.2 7.4 86 27-127 26-114 (372)
21 3eh0_A UDP-3-O-[3-hydroxymyris 89.8 0.74 2.5E-05 45.1 7.8 86 27-127 4-92 (341)
22 4e79_A UDP-3-O-acylglucosamine 89.2 0.45 1.6E-05 47.0 5.9 88 25-127 6-98 (357)
23 1xjc_A MOBB protein homolog; s 88.5 0.48 1.6E-05 41.5 4.8 32 131-162 3-36 (169)
24 1rz3_A Hypothetical protein rb 88.4 0.84 2.9E-05 40.7 6.6 48 115-162 4-54 (201)
25 3bl4_A Uncharacterized protein 88.1 2.6 8.9E-05 34.6 8.8 110 346-459 8-123 (124)
26 3fwy_A Light-independent proto 87.7 0.48 1.6E-05 45.9 4.8 32 131-162 47-80 (314)
27 3of5_A Dethiobiotin synthetase 86.7 0.63 2.1E-05 42.8 4.7 33 131-163 3-38 (228)
28 4dzz_A Plasmid partitioning pr 86.5 0.62 2.1E-05 41.4 4.5 32 132-163 1-35 (206)
29 3bfv_A CAPA1, CAPB2, membrane 86.4 1.4 4.8E-05 41.5 7.1 50 114-163 62-116 (271)
30 1byi_A Dethiobiotin synthase; 86.0 0.55 1.9E-05 42.5 4.0 31 133-163 2-35 (224)
31 3cio_A ETK, tyrosine-protein k 84.9 1.7 5.8E-05 41.6 7.0 50 114-163 84-138 (299)
32 3la6_A Tyrosine-protein kinase 84.4 1.7 5.8E-05 41.3 6.7 48 115-162 73-125 (286)
33 3fgn_A Dethiobiotin synthetase 82.3 1.2 4.1E-05 41.6 4.6 33 130-162 24-59 (251)
34 3c8u_A Fructokinase; YP_612366 81.6 3.1 0.00011 37.1 7.0 43 116-158 6-50 (208)
35 3ea0_A ATPase, para family; al 81.1 1.3 4.4E-05 40.5 4.3 32 131-162 3-38 (245)
36 3qxc_A Dethiobiotin synthetase 80.9 1.5 5E-05 40.7 4.6 32 132-163 21-55 (242)
37 2oze_A ORF delta'; para, walke 80.9 2.2 7.5E-05 40.4 6.0 49 113-162 18-69 (298)
38 1g3q_A MIND ATPase, cell divis 80.8 1.5 5.1E-05 39.9 4.6 31 133-163 3-36 (237)
39 3dm5_A SRP54, signal recogniti 80.3 2.8 9.7E-05 42.4 6.8 31 132-162 100-132 (443)
40 1wcv_1 SOJ, segregation protei 80.1 1.3 4.6E-05 41.0 4.1 33 131-163 5-40 (257)
41 3kl4_A SRP54, signal recogniti 80.1 2.6 8.9E-05 42.6 6.5 31 132-162 97-129 (433)
42 2px0_A Flagellar biosynthesis 79.0 1.2 4E-05 42.7 3.4 31 132-162 105-138 (296)
43 1zu4_A FTSY; GTPase, signal re 79.0 1.9 6.3E-05 41.8 4.8 32 132-163 105-138 (320)
44 3h3e_A Uncharacterized protein 78.7 6.8 0.00023 36.7 8.5 75 352-431 167-244 (267)
45 1vma_A Cell division protein F 77.7 2.2 7.4E-05 41.1 4.8 31 132-162 104-136 (306)
46 3end_A Light-independent proto 77.6 2.1 7.3E-05 40.8 4.8 33 130-162 39-73 (307)
47 2xj4_A MIPZ; replication, cell 77.1 2 7E-05 40.5 4.4 31 133-163 5-38 (286)
48 1hyq_A MIND, cell division inh 75.5 2.2 7.6E-05 39.5 4.2 31 133-163 3-36 (263)
49 2ph1_A Nucleotide-binding prot 75.4 2.7 9.1E-05 39.1 4.7 32 132-163 18-52 (262)
50 3k9g_A PF-32 protein; ssgcid, 75.2 2.3 7.9E-05 39.5 4.2 33 129-162 24-59 (267)
51 3q9l_A Septum site-determining 74.8 2.8 9.5E-05 38.6 4.6 31 133-163 3-36 (260)
52 2yvu_A Probable adenylyl-sulfa 74.4 3.1 0.00011 36.2 4.6 32 131-162 12-45 (186)
53 1pjq_A CYSG, siroheme synthase 74.4 4.1 0.00014 41.5 6.1 22 134-156 123-145 (457)
54 1np6_A Molybdopterin-guanine d 74.3 3.5 0.00012 36.0 4.9 31 132-162 6-38 (174)
55 2z0h_A DTMP kinase, thymidylat 73.6 3.4 0.00012 36.0 4.7 30 134-163 2-33 (197)
56 3cwq_A Para family chromosome 73.1 3.1 0.00011 37.2 4.4 28 134-162 2-32 (209)
57 1odf_A YGR205W, hypothetical 3 72.0 5.6 0.00019 37.7 6.1 28 129-156 28-57 (290)
58 1a7j_A Phosphoribulokinase; tr 71.2 2.5 8.6E-05 40.2 3.4 26 131-156 4-31 (290)
59 3ug7_A Arsenical pump-driving 71.2 4.1 0.00014 39.8 5.1 35 129-163 22-59 (349)
60 3ez2_A Plasmid partition prote 70.7 4.1 0.00014 40.5 5.0 37 126-162 102-147 (398)
61 3ez9_A Para; DNA binding, wing 70.0 2.4 8.4E-05 42.2 3.2 37 126-162 105-150 (403)
62 3zq6_A Putative arsenical pump 69.8 4.4 0.00015 39.1 4.9 32 132-163 13-47 (324)
63 1uj2_A Uridine-cytidine kinase 69.5 2.5 8.7E-05 39.0 3.0 39 113-154 6-46 (252)
64 2pez_A Bifunctional 3'-phospho 69.1 5.3 0.00018 34.4 4.8 31 132-162 5-37 (179)
65 2f1r_A Molybdopterin-guanine d 68.9 3.4 0.00012 35.9 3.5 31 132-162 2-34 (171)
66 1nn5_A Similar to deoxythymidy 68.8 4.3 0.00015 35.9 4.3 31 132-162 9-41 (215)
67 2jeo_A Uridine-cytidine kinase 68.7 3.5 0.00012 37.8 3.8 23 132-154 25-49 (245)
68 2pbr_A DTMP kinase, thymidylat 68.3 5.5 0.00019 34.5 4.8 30 134-163 2-33 (195)
69 2obn_A Hypothetical protein; s 68.1 4.3 0.00015 39.6 4.4 33 131-163 151-186 (349)
70 3b9q_A Chloroplast SRP recepto 67.8 5.4 0.00018 38.1 4.9 31 132-162 100-132 (302)
71 2wwf_A Thymidilate kinase, put 67.3 4.7 0.00016 35.6 4.2 30 132-161 10-41 (212)
72 3asz_A Uridine kinase; cytidin 67.0 3.4 0.00012 36.7 3.2 25 131-155 5-31 (211)
73 3tqc_A Pantothenate kinase; bi 66.9 7.8 0.00027 37.4 5.9 40 116-155 74-117 (321)
74 1rj9_A FTSY, signal recognitio 66.1 6.5 0.00022 37.6 5.1 32 131-162 101-134 (304)
75 3e70_C DPA, signal recognition 64.8 7 0.00024 37.8 5.2 32 131-162 128-161 (328)
76 2grj_A Dephospho-COA kinase; T 64.8 5.4 0.00019 35.3 4.0 28 132-162 12-41 (192)
77 3fkq_A NTRC-like two-domain pr 64.1 5.6 0.00019 39.2 4.4 33 130-162 141-176 (373)
78 1nks_A Adenylate kinase; therm 64.0 6.3 0.00021 34.0 4.3 30 133-162 2-33 (194)
79 1sq5_A Pantothenate kinase; P- 63.1 5.5 0.00019 38.0 4.0 26 130-155 78-105 (308)
80 2og2_A Putative signal recogni 62.5 7.2 0.00025 38.3 4.8 31 132-162 157-189 (359)
81 3tr0_A Guanylate kinase, GMP k 61.6 5 0.00017 35.2 3.2 23 132-154 7-31 (205)
82 2i3b_A HCR-ntpase, human cance 61.2 5.7 0.00019 35.1 3.5 25 134-158 3-29 (189)
83 2if2_A Dephospho-COA kinase; a 60.9 4.1 0.00014 35.9 2.5 26 133-162 2-29 (204)
84 3pg5_A Uncharacterized protein 60.8 4.1 0.00014 40.0 2.7 32 132-163 1-35 (361)
85 3p32_A Probable GTPase RV1496/ 60.6 16 0.00056 35.4 7.1 34 129-162 76-111 (355)
86 2yhs_A FTSY, cell division pro 60.0 8.6 0.0003 39.4 4.9 32 132-163 293-326 (503)
87 3ake_A Cytidylate kinase; CMP 59.5 6.2 0.00021 34.6 3.5 22 133-154 3-26 (208)
88 1ye8_A Protein THEP1, hypothet 58.2 7.1 0.00024 34.0 3.5 21 134-154 2-24 (178)
89 3kb2_A SPBC2 prophage-derived 58.2 7.1 0.00024 33.0 3.5 22 133-154 2-25 (173)
90 3aez_A Pantothenate kinase; tr 58.1 7.4 0.00025 37.3 3.9 27 130-156 88-116 (312)
91 2nu8_B SCS-beta, succinyl-COA 57.4 1.1E+02 0.0038 30.0 12.5 97 360-462 285-386 (388)
92 1zuh_A Shikimate kinase; alpha 56.9 7.6 0.00026 32.9 3.5 29 131-162 6-36 (168)
93 1jjv_A Dephospho-COA kinase; P 56.9 6.4 0.00022 34.7 3.1 25 133-161 3-29 (206)
94 4i1u_A Dephospho-COA kinase; s 55.9 9.7 0.00033 34.3 4.1 29 130-162 7-37 (210)
95 2p67_A LAO/AO transport system 55.9 19 0.00066 34.7 6.6 34 129-162 53-88 (341)
96 1cp2_A CP2, nitrogenase iron p 55.7 7.3 0.00025 36.0 3.4 30 133-162 2-33 (269)
97 1cke_A CK, MSSA, protein (cyti 55.4 8.2 0.00028 34.4 3.6 22 133-154 6-29 (227)
98 3lnc_A Guanylate kinase, GMP k 55.2 6.2 0.00021 35.7 2.7 23 132-154 27-52 (231)
99 2v3c_C SRP54, signal recogniti 55.1 33 0.0011 34.4 8.3 30 133-162 100-131 (432)
100 4eun_A Thermoresistant glucoki 55.0 9.5 0.00033 33.5 3.9 24 131-154 28-53 (200)
101 2xxa_A Signal recognition part 54.8 12 0.00041 37.7 5.0 31 132-162 100-133 (433)
102 1ls1_A Signal recognition part 54.2 12 0.00042 35.4 4.7 31 132-162 98-130 (295)
103 1uf9_A TT1252 protein; P-loop, 54.2 7.6 0.00026 33.9 3.1 30 129-162 5-36 (203)
104 3uie_A Adenylyl-sulfate kinase 53.9 12 0.00041 32.8 4.4 30 131-160 24-55 (200)
105 3hjn_A DTMP kinase, thymidylat 53.5 8.8 0.0003 34.0 3.4 24 141-164 11-34 (197)
106 3a00_A Guanylate kinase, GMP k 53.4 6 0.00021 34.4 2.2 23 133-155 2-26 (186)
107 2afh_E Nitrogenase iron protei 53.1 8.6 0.00029 36.0 3.4 31 132-162 2-34 (289)
108 2vo1_A CTP synthase 1; pyrimid 53.0 12 0.00041 34.9 4.2 60 131-194 22-87 (295)
109 1knq_A Gluconate kinase; ALFA/ 53.0 11 0.00039 32.0 4.0 25 130-154 6-32 (175)
110 2fp4_B Succinyl-COA ligase [GD 52.9 98 0.0034 30.5 11.3 97 360-462 292-393 (395)
111 4edh_A DTMP kinase, thymidylat 52.3 16 0.00054 32.8 4.9 33 132-164 6-40 (213)
112 4tmk_A Protein (thymidylate ki 51.8 15 0.00051 33.0 4.7 31 132-162 3-36 (213)
113 1kag_A SKI, shikimate kinase I 51.0 8.1 0.00028 32.8 2.7 22 133-154 5-28 (173)
114 2j41_A Guanylate kinase; GMP, 50.9 7.7 0.00026 34.0 2.6 23 132-154 6-30 (207)
115 1j8m_F SRP54, signal recogniti 50.1 14 0.00048 35.1 4.4 31 132-162 98-130 (297)
116 1e6c_A Shikimate kinase; phosp 49.2 10 0.00035 32.0 3.1 22 133-154 3-26 (173)
117 3lv8_A DTMP kinase, thymidylat 48.4 17 0.0006 33.2 4.6 30 131-160 26-57 (236)
118 2qm8_A GTPase/ATPase; G protei 48.2 29 0.001 33.4 6.4 34 129-162 52-87 (337)
119 2woo_A ATPase GET3; tail-ancho 48.0 12 0.00042 36.0 3.7 31 133-163 19-52 (329)
120 3kjh_A CO dehydrogenase/acetyl 47.7 6.6 0.00023 35.5 1.6 25 138-162 8-32 (254)
121 2pt5_A Shikimate kinase, SK; a 46.7 14 0.00047 31.1 3.5 21 134-154 2-24 (168)
122 3ec2_A DNA replication protein 46.5 29 0.00099 29.5 5.6 48 114-161 19-70 (180)
123 2plr_A DTMP kinase, probable t 46.3 16 0.00056 31.8 4.0 27 132-158 4-32 (213)
124 1y63_A LMAJ004144AAA protein; 46.0 16 0.00053 31.6 3.7 23 131-153 9-33 (184)
125 1kht_A Adenylate kinase; phosp 45.8 22 0.00074 30.4 4.7 26 133-158 4-31 (192)
126 3tlx_A Adenylate kinase 2; str 45.7 33 0.0011 31.2 6.1 40 115-154 12-53 (243)
127 1xx6_A Thymidine kinase; NESG, 45.5 26 0.00088 30.8 5.1 33 130-162 6-40 (191)
128 2j37_W Signal recognition part 45.5 19 0.00063 37.1 4.7 31 132-162 101-133 (504)
129 3tau_A Guanylate kinase, GMP k 45.4 12 0.00039 33.3 2.8 24 131-154 7-32 (208)
130 1qf9_A UMP/CMP kinase, protein 44.9 15 0.00052 31.4 3.5 23 132-154 6-30 (194)
131 2ffh_A Protein (FFH); SRP54, s 44.9 19 0.00066 36.0 4.6 31 132-162 98-130 (425)
132 2www_A Methylmalonic aciduria 44.8 47 0.0016 32.1 7.4 32 131-162 73-106 (349)
133 2iyv_A Shikimate kinase, SK; t 44.6 12 0.00042 32.1 2.8 22 133-154 3-26 (184)
134 2eyu_A Twitching motility prot 44.4 17 0.00057 33.8 3.8 30 132-161 25-57 (261)
135 3syl_A Protein CBBX; photosynt 44.3 19 0.00063 33.8 4.3 23 135-158 73-95 (309)
136 4eaq_A DTMP kinase, thymidylat 44.1 24 0.00081 31.9 4.8 33 131-164 25-59 (229)
137 3io3_A DEHA2D07832P; chaperone 43.3 16 0.00054 35.6 3.6 31 132-162 18-52 (348)
138 3iqw_A Tail-anchored protein t 42.3 17 0.00057 35.2 3.6 25 138-162 24-48 (334)
139 2qt1_A Nicotinamide riboside k 41.7 9.3 0.00032 33.7 1.6 24 131-154 20-45 (207)
140 1znw_A Guanylate kinase, GMP k 41.7 16 0.00054 32.3 3.1 25 131-155 19-45 (207)
141 1q3t_A Cytidylate kinase; nucl 41.5 20 0.0007 32.2 3.9 24 131-154 15-40 (236)
142 1zak_A Adenylate kinase; ATP:A 41.4 12 0.0004 33.4 2.2 20 134-154 10-29 (222)
143 3ld9_A DTMP kinase, thymidylat 41.1 21 0.0007 32.4 3.8 33 131-163 20-55 (223)
144 3pzx_A Formate--tetrahydrofola 40.9 25 0.00087 35.8 4.6 35 129-163 54-94 (557)
145 3t61_A Gluconokinase; PSI-biol 40.8 19 0.00065 31.4 3.5 23 132-154 18-42 (202)
146 4ehx_A Tetraacyldisaccharide 4 40.7 19 0.00065 34.5 3.7 30 129-158 33-66 (315)
147 1lvg_A Guanylate kinase, GMP k 40.6 16 0.00055 32.1 3.0 23 132-154 4-28 (198)
148 3upu_A ATP-dependent DNA helic 40.6 24 0.00082 35.6 4.6 44 113-159 29-74 (459)
149 3v9p_A DTMP kinase, thymidylat 40.2 25 0.00086 31.8 4.3 33 131-163 24-62 (227)
150 3a4m_A L-seryl-tRNA(SEC) kinas 40.1 29 0.00099 31.9 4.8 31 132-162 4-36 (260)
151 2cdn_A Adenylate kinase; phosp 40.0 25 0.00084 30.6 4.1 23 132-154 20-44 (201)
152 1m7g_A Adenylylsulfate kinase; 39.7 35 0.0012 30.0 5.2 31 131-161 24-57 (211)
153 3vaa_A Shikimate kinase, SK; s 39.6 23 0.0008 30.8 3.9 23 132-154 25-49 (199)
154 1vht_A Dephospho-COA kinase; s 39.4 20 0.00068 31.7 3.4 27 132-162 4-32 (218)
155 3m47_A Orotidine 5'-phosphate 38.9 2.1E+02 0.0072 25.5 10.4 61 368-431 101-163 (228)
156 2c5m_A CTP synthase; cytidine 38.7 31 0.001 32.0 4.4 32 131-162 22-57 (294)
157 2c95_A Adenylate kinase 1; tra 38.7 21 0.0007 30.7 3.4 23 132-154 9-33 (196)
158 3ufx_B Succinyl-COA synthetase 38.5 2.6E+02 0.0087 27.4 11.7 94 361-462 277-375 (397)
159 2vli_A Antibiotic resistance p 38.0 15 0.00052 31.3 2.3 23 132-154 5-29 (183)
160 1kgd_A CASK, peripheral plasma 37.7 21 0.00072 30.6 3.2 24 131-154 4-29 (180)
161 3jvv_A Twitching mobility prot 37.4 25 0.00085 34.3 4.0 30 132-161 123-155 (356)
162 4hlc_A DTMP kinase, thymidylat 37.4 20 0.00068 31.9 3.1 30 134-164 4-35 (205)
163 2w0m_A SSO2452; RECA, SSPF, un 37.3 29 0.00098 30.6 4.2 31 132-162 23-55 (235)
164 4e22_A Cytidylate kinase; P-lo 37.3 21 0.00071 32.7 3.3 23 132-154 27-51 (252)
165 2woj_A ATPase GET3; tail-ancho 37.1 27 0.00093 33.9 4.2 26 138-163 26-53 (354)
166 2w58_A DNAI, primosome compone 37.0 72 0.0025 27.4 6.8 48 115-162 35-86 (202)
167 2v54_A DTMP kinase, thymidylat 36.0 19 0.00063 31.3 2.6 29 132-162 4-34 (204)
168 1ukz_A Uridylate kinase; trans 35.7 24 0.00082 30.7 3.3 25 130-154 13-39 (203)
169 2b8t_A Thymidine kinase; deoxy 35.4 40 0.0014 30.4 4.8 35 129-163 9-45 (223)
170 2f6r_A COA synthase, bifunctio 35.1 24 0.00083 32.9 3.4 27 132-162 75-103 (281)
171 2kjq_A DNAA-related protein; s 34.9 42 0.0014 27.9 4.6 32 131-162 35-68 (149)
172 2jaq_A Deoxyguanosine kinase; 34.6 28 0.00096 30.0 3.6 21 134-154 2-24 (205)
173 1tue_A Replication protein E1; 33.9 77 0.0026 28.3 6.3 41 113-154 40-82 (212)
174 2qor_A Guanylate kinase; phosp 33.8 13 0.00044 32.7 1.2 23 132-154 12-36 (204)
175 3kta_A Chromosome segregation 33.5 25 0.00084 30.0 3.0 22 133-154 27-50 (182)
176 2bdt_A BH3686; alpha-beta prot 33.3 25 0.00087 30.2 3.0 20 133-152 3-24 (189)
177 3n70_A Transport activator; si 33.0 84 0.0029 25.5 6.2 26 135-160 27-54 (145)
178 3do6_A Formate--tetrahydrofola 32.8 40 0.0014 34.2 4.6 34 129-162 40-79 (543)
179 1x6v_B Bifunctional 3'-phospho 32.8 43 0.0015 35.3 5.2 32 131-162 51-84 (630)
180 1tev_A UMP-CMP kinase; ploop, 32.6 32 0.0011 29.3 3.6 22 133-154 4-27 (196)
181 2orw_A Thymidine kinase; TMTK, 32.4 42 0.0014 29.1 4.3 30 132-162 3-35 (184)
182 1gtv_A TMK, thymidylate kinase 32.3 13 0.00043 32.8 0.8 27 135-162 6-32 (214)
183 3bos_A Putative DNA replicatio 32.1 1.1E+02 0.0036 26.8 7.2 46 115-162 37-84 (242)
184 1ccw_A Protein (glutamate muta 32.1 63 0.0021 26.5 5.1 91 331-437 41-131 (137)
185 1dek_A Deoxynucleoside monopho 31.9 29 0.00098 31.8 3.2 26 133-161 2-29 (241)
186 3d03_A Phosphohydrolase; glyce 31.9 1.6E+02 0.0053 26.4 8.5 57 370-428 25-81 (274)
187 2ewv_A Twitching motility prot 31.7 32 0.0011 33.7 3.8 30 132-161 136-168 (372)
188 1qhx_A CPT, protein (chloramph 31.4 28 0.00097 29.4 3.0 22 133-154 4-27 (178)
189 1htw_A HI0065; nucleotide-bind 31.3 32 0.0011 29.1 3.2 25 130-154 31-57 (158)
190 1y5e_A Molybdenum cofactor bio 31.3 1.7E+02 0.0057 24.8 8.0 13 463-475 72-84 (169)
191 3lw7_A Adenylate kinase relate 31.2 40 0.0014 27.9 3.9 26 133-162 2-29 (179)
192 1p9r_A General secretion pathw 31.0 36 0.0012 34.0 4.0 30 132-161 167-198 (418)
193 4a0g_A Adenosylmethionine-8-am 30.5 36 0.0012 37.3 4.3 32 131-162 33-72 (831)
194 2bwj_A Adenylate kinase 5; pho 30.3 31 0.0011 29.6 3.1 23 132-154 12-36 (199)
195 2gks_A Bifunctional SAT/APS ki 30.2 56 0.0019 33.8 5.5 31 132-162 372-404 (546)
196 3iij_A Coilin-interacting nucl 29.9 34 0.0011 29.1 3.2 23 132-154 11-35 (180)
197 2d59_A Hypothetical protein PH 29.3 1.6E+02 0.0056 24.0 7.4 31 132-162 22-53 (144)
198 1aky_A Adenylate kinase; ATP:A 29.1 42 0.0014 29.6 3.8 23 132-154 4-28 (220)
199 1via_A Shikimate kinase; struc 29.0 33 0.0011 29.0 3.0 22 133-154 5-28 (175)
200 1zp6_A Hypothetical protein AT 28.7 32 0.0011 29.4 2.8 23 132-154 9-33 (191)
201 3cm0_A Adenylate kinase; ATP-b 28.7 40 0.0014 28.6 3.5 22 133-154 5-28 (186)
202 1yrb_A ATP(GTP)binding protein 28.2 33 0.0011 31.1 3.0 30 132-162 14-45 (262)
203 3jyo_A Quinate/shikimate dehyd 28.0 3.6E+02 0.012 24.9 11.3 94 366-475 107-206 (283)
204 2j9r_A Thymidine kinase; TK1, 28.0 73 0.0025 28.5 5.1 33 130-162 26-60 (214)
205 3trf_A Shikimate kinase, SK; a 27.6 45 0.0015 28.3 3.7 23 132-154 5-29 (185)
206 3oig_A Enoyl-[acyl-carrier-pro 27.1 1.6E+02 0.0054 26.5 7.6 35 130-164 5-39 (266)
207 3ney_A 55 kDa erythrocyte memb 27.1 49 0.0017 29.2 3.8 27 128-154 15-43 (197)
208 2bbw_A Adenylate kinase 4, AK4 27.1 48 0.0016 29.9 3.9 23 132-154 27-51 (246)
209 3o38_A Short chain dehydrogena 26.8 1.2E+02 0.0039 27.4 6.6 34 130-164 20-53 (266)
210 2rhm_A Putative kinase; P-loop 26.8 40 0.0014 28.8 3.1 23 132-154 5-29 (193)
211 3dah_A Ribose-phosphate pyroph 26.6 70 0.0024 30.6 5.0 132 320-459 18-162 (319)
212 1ihu_A Arsenical pump-driving 26.6 42 0.0014 35.0 3.8 31 132-162 8-40 (589)
213 1z6g_A Guanylate kinase; struc 26.6 32 0.0011 30.6 2.5 23 132-154 23-47 (218)
214 1l8q_A Chromosomal replication 26.5 1.1E+02 0.0038 28.6 6.6 46 117-162 22-69 (324)
215 2qz4_A Paraplegin; AAA+, SPG7, 25.8 1E+02 0.0035 27.5 6.0 42 113-154 13-63 (262)
216 3dnf_A ISPH, LYTB, 4-hydroxy-3 25.7 3E+02 0.01 25.8 9.1 111 357-484 87-234 (297)
217 1s96_A Guanylate kinase, GMP k 25.6 43 0.0015 29.9 3.2 25 130-154 14-40 (219)
218 2d00_A V-type ATP synthase sub 25.6 1.7E+02 0.0059 22.9 6.4 8 388-395 4-11 (109)
219 1g8f_A Sulfate adenylyltransfe 25.4 60 0.002 33.3 4.5 26 131-156 394-421 (511)
220 3nwj_A ATSK2; P loop, shikimat 25.0 45 0.0015 30.6 3.2 23 132-154 48-72 (250)
221 3lfu_A DNA helicase II; SF1 he 24.9 39 0.0013 35.4 3.2 30 388-424 348-377 (647)
222 1iuk_A Hypothetical protein TT 24.8 1.9E+02 0.0064 23.6 6.9 61 132-192 13-78 (140)
223 1njg_A DNA polymerase III subu 24.8 1.2E+02 0.0041 26.2 6.1 39 116-155 30-70 (250)
224 3gdg_A Probable NADP-dependent 24.2 85 0.0029 28.4 5.1 36 129-165 17-53 (267)
225 3nva_A CTP synthase; rossman f 24.0 75 0.0026 32.6 4.9 31 132-162 3-37 (535)
226 1mkz_A Molybdenum cofactor bio 24.0 2.4E+02 0.0084 23.8 7.7 32 388-419 11-42 (172)
227 1cr0_A DNA primase/helicase; R 23.7 72 0.0025 29.6 4.5 31 131-161 34-67 (296)
228 2oap_1 GSPE-2, type II secreti 23.6 37 0.0013 34.9 2.6 23 132-154 260-284 (511)
229 3b85_A Phosphate starvation-in 23.5 48 0.0017 29.4 3.1 25 132-157 22-48 (208)
230 1mw7_A Hypothetical protein HP 23.5 2.5E+02 0.0085 25.5 7.8 62 319-380 47-112 (240)
231 3igf_A ALL4481 protein; two-do 23.4 27 0.00094 34.3 1.5 24 139-162 11-34 (374)
232 2r8r_A Sensor protein; KDPD, P 23.2 54 0.0019 29.7 3.3 28 135-162 11-38 (228)
233 3lpx_A GYRA, DNA gyrase, A sub 23.0 21 0.00073 36.1 0.6 38 1-39 148-185 (500)
234 2olj_A Amino acid ABC transpor 22.9 46 0.0016 30.7 2.9 23 132-154 50-74 (263)
235 3czq_A Putative polyphosphate 22.6 57 0.0019 31.0 3.5 33 132-164 86-120 (304)
236 3lrt_A Ribose-phosphate pyroph 22.5 3.9E+02 0.013 24.8 9.3 148 320-477 11-167 (286)
237 1uf3_A Hypothetical protein TT 22.4 3.3E+02 0.011 23.2 8.6 66 359-428 8-73 (228)
238 4ekn_B Aspartate carbamoyltran 22.3 2.2E+02 0.0074 26.9 7.5 91 367-470 129-225 (306)
239 3r20_A Cytidylate kinase; stru 22.2 65 0.0022 29.2 3.7 23 132-154 9-33 (233)
240 3tq8_A Dihydrofolate reductase 21.9 62 0.0021 28.1 3.3 57 344-425 53-115 (178)
241 1y81_A Conserved hypothetical 21.9 1.7E+02 0.0059 23.8 6.0 33 129-162 11-45 (138)
242 2jnb_A NHP2-like protein 1; sp 21.8 2E+02 0.0068 23.9 6.4 45 100-155 93-137 (144)
243 1nij_A Hypothetical protein YJ 21.8 38 0.0013 32.2 2.1 24 131-154 3-28 (318)
244 3oj0_A Glutr, glutamyl-tRNA re 21.6 1.9E+02 0.0066 23.2 6.4 76 376-470 12-87 (144)
245 3vkg_A Dynein heavy chain, cyt 21.6 42 0.0014 42.4 2.9 54 100-162 1622-1675(3245)
246 1in4_A RUVB, holliday junction 21.5 1E+02 0.0034 29.3 5.2 24 131-154 50-75 (334)
247 2h92_A Cytidylate kinase; ross 21.5 47 0.0016 29.1 2.6 22 133-154 4-27 (219)
248 2pcj_A ABC transporter, lipopr 21.4 43 0.0015 30.0 2.3 23 132-154 30-54 (224)
249 3qks_A DNA double-strand break 21.4 73 0.0025 27.9 3.8 25 131-155 22-48 (203)
250 3hdt_A Putative kinase; struct 21.4 73 0.0025 28.6 3.9 28 132-162 14-43 (223)
251 3ilw_A DNA gyrase subunit A; D 21.2 22 0.00075 35.9 0.3 38 1-38 155-195 (470)
252 1b0u_A Histidine permease; ABC 21.1 53 0.0018 30.3 2.9 24 132-155 32-57 (262)
253 4g1u_C Hemin import ATP-bindin 21.1 30 0.001 32.1 1.2 25 132-156 37-63 (266)
254 3rd5_A Mypaa.01249.C; ssgcid, 21.1 3.1E+02 0.011 24.9 8.5 82 129-218 13-95 (291)
255 1mv5_A LMRA, multidrug resista 21.0 31 0.001 31.5 1.2 24 132-155 28-53 (243)
256 2zu0_C Probable ATP-dependent 21.0 63 0.0022 29.8 3.4 23 132-154 46-70 (267)
257 2d2e_A SUFC protein; ABC-ATPas 20.9 60 0.002 29.6 3.2 22 132-153 29-52 (250)
258 2v9p_A Replication protein E1; 20.7 94 0.0032 29.4 4.6 24 131-154 125-150 (305)
259 3be4_A Adenylate kinase; malar 20.7 57 0.002 28.7 3.0 27 133-162 6-34 (217)
260 3pzy_A MOG; ssgcid, seattle st 20.6 1.1E+02 0.0037 26.0 4.6 46 429-475 29-78 (164)
261 2vp4_A Deoxynucleoside kinase; 20.6 43 0.0015 30.0 2.1 24 130-153 18-43 (230)
262 2yz2_A Putative ABC transporte 20.5 54 0.0019 30.2 2.9 23 132-154 33-57 (266)
263 2onk_A Molybdate/tungstate ABC 20.5 63 0.0022 29.3 3.3 23 133-155 25-49 (240)
264 3euj_A Chromosome partition pr 20.5 61 0.0021 33.0 3.4 28 133-160 30-59 (483)
265 2nov_A DNA topoisomerase 4 sub 20.4 23 0.00079 36.1 0.2 11 1-11 174-184 (496)
266 3fb4_A Adenylate kinase; psych 20.3 68 0.0023 27.9 3.4 21 134-154 2-24 (216)
267 1ak2_A Adenylate kinase isoenz 20.3 77 0.0026 28.2 3.8 23 132-154 16-40 (233)
268 3co5_A Putative two-component 20.3 65 0.0022 26.2 3.1 23 131-154 29-51 (143)
269 1ko7_A HPR kinase/phosphatase; 20.2 2.4E+02 0.0083 26.7 7.4 67 78-150 73-164 (314)
270 1ml4_A Aspartate transcarbamoy 20.1 4.5E+02 0.015 24.7 9.3 90 367-470 133-228 (308)
271 1ji0_A ABC transporter; ATP bi 20.1 54 0.0019 29.7 2.7 23 132-154 32-56 (240)
272 1vpl_A ABC transporter, ATP-bi 20.1 58 0.002 29.9 2.9 23 132-154 41-65 (256)
No 1
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=4.8e-85 Score=682.49 Aligned_cols=438 Identities=30% Similarity=0.420 Sum_probs=385.2
Q ss_pred cCHHHHHHHhCCeeccC-CCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCCccEEE
Q 011395 27 WTINEIAESVNGKILKW-GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWDKGFVQ 105 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~-~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~ 105 (487)
|++++|++.+++.+.+. ..|+++++|||.++| |++|||++|+++|||+|+++|++ +||.++|++++.+ +++|++.
T Consensus 4 ~~l~~i~~~~~~~~~~~~~~i~~i~~Dsr~v~~--g~lf~al~G~~~dgh~f~~~a~~-~Ga~~vv~~~~~~-~~~p~i~ 79 (452)
T 1gg4_A 4 VTLSQLTDILNGELQGADITLDAVTTDTRKLTP--GCLFVALKGERFDAHDFADQAKA-GGAGALLVSRPLD-IDLPQLI 79 (452)
T ss_dssp EEHHHHHHHTTEEEESCCCEESCEESCGGGCCT--TCEEECCBCSSCBTTTTHHHHHH-TTCCEEEESSCCS-CSSCEEE
T ss_pred CcHHHHHHHhCCEEeCCCceEEEEEEeCCCcCC--CcEEEEeCCCCCCHHHHHHHHHH-cCCEEEEECCCcC-CCCCEEE
Confidence 79999999999886542 238999999999999 99999999999999999999999 9999999998754 2689999
Q ss_pred EcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCC
Q 011395 106 VEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAV 185 (487)
Q Consensus 106 V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~ 185 (487)
|+ |++++|++|+.+++. ..+.++|+||||||||||++||+++|++.| ++..+.||+|+++|.|++++++..++
T Consensus 80 v~-----~~~~~l~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~t~g~~n~~ig~p~t~~~~~~~~ 152 (452)
T 1gg4_A 80 VK-----DTRLAFGELAAWVRQ-QVPARVVALTGSSGKTSVKEMTAAILSQCG-NTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452)
T ss_dssp ES-----CHHHHHHHHHHHHHH-HSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHTTCCTTC
T ss_pred EC-----CHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeeccccccCCcchhHHHHcCCCCC
Confidence 99 999999999997665 456899999999999999999999997777 67789999999999999999988889
Q ss_pred cEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhh--cCC
Q 011395 186 DIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL--TVP 263 (487)
Q Consensus 186 ~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~--~~~ 263 (487)
+++|+|+|+++.+++.+++++++|+++|||||++||+++|||+|+|+++|++||+.+++++.+|+|.|||....+ ...
T Consensus 153 d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~ 232 (452)
T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452)
T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHHhhc
Confidence 999999999999999999888899999999999999999999999999999999998889999999999987766 322
Q ss_pred CCCcEEEEeCCC-CceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcC
Q 011395 264 RGVRKVFFGWRR-GCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSN 342 (487)
Q Consensus 264 ~~~~vi~~g~~~-~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~ 342 (487)
++++++||.+. .+|+++.+ +.....+..|.+..++....+.++++|.||++|+++|++++..+|++++.|+++|++
T Consensus 233 -~~~~~~~g~~~~~~d~~~~~--~~~~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~ 309 (452)
T 1gg4_A 233 -SRKVWRFSPNAANSDFTATN--IHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN 309 (452)
T ss_dssp -TSEEEEECSSCTTCSBEEEE--EEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT
T ss_pred -CCCEEEEeCCCCCCcEEEEE--EEEcCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 36899999865 57888877 777666777877654222378999999999999999999999999999999999999
Q ss_pred CCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEE
Q 011395 343 FSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLI 422 (487)
Q Consensus 343 ~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~v 422 (487)
|+++|||||++...+++++|||||||||+|++++++++++++ +|+++|||+|.|+|+++++.|++|++.+.+..+|.+
T Consensus 310 ~~~~~gR~e~~~~~~~~~vidDsyahnp~s~~~~l~~l~~~~--~~~i~V~G~~~e~g~~~~~~~~~~~~~~~~~~~d~v 387 (452)
T 1gg4_A 310 LKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMP--GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRV 387 (452)
T ss_dssp CCCCTTSSEEEEEETTEEEEECCSCCCHHHHHHHHHHHHHSS--SEEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCceEEECCCCcEEEEeCCCCCHHHHHHHHHHHHhcc--CCEEEEECCccccCChhHHHHHHHHHHHHHcCCCEE
Confidence 999999999998767899999999999999999999998764 689999999999999999999999999887559999
Q ss_pred EEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCC--CCEEEEecCCCCcHHHHHHHHH
Q 011395 423 GLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKS--NDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 423 i~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~--~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
|++|+.++.+.+.+.. ..+++|+++|++.+.+.+++ ||+||++||+++.||++++.|.
T Consensus 388 i~~g~~~~~i~~~~~~-----~~~~~~~~~ai~~a~~~~~~~~gd~VLv~GS~~~~~e~i~~~l~ 447 (452)
T 1gg4_A 388 LSVGKQSHAISTASGV-----GEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQ 447 (452)
T ss_dssp EEESSSTHHHHHHTTS-----CEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC
T ss_pred EEECcCHHHHHHHhhc-----CceeCCHHHHHHHHHHhhcccCCcEEEEEcCCcCCHHHHHHHHH
Confidence 9999999988886632 13679999999999999998 9999999999999999999884
No 2
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=1.3e-84 Score=680.12 Aligned_cols=437 Identities=25% Similarity=0.397 Sum_probs=387.5
Q ss_pred ccCHHHHHHHhCCeecc-C----CCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCCCC
Q 011395 26 IWTINEIAESVNGKILK-W----GPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNNWD 100 (487)
Q Consensus 26 ~~~l~~l~~~~~~~~~~-~----~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~~~ 100 (487)
+|++++|++++++.+ . . ..|+++++|||.++| |++|||++|. +|||+|+++|++ +||.++|+++..+ +
T Consensus 2 ~~~~~~i~~~~~~~~-~~~~~~~~~i~~i~~Dsr~v~~--g~lF~al~G~-~dgh~~~~~a~~-~Ga~~vv~~~~~~--~ 74 (454)
T 2am1_A 2 KLTIHEIAQVVGAKN-DISIFEDTQLEKAEFDSRLIGT--GDLFVPLKGA-RDGHDFIETAFE-NGAAVTLSEKEVS--N 74 (454)
T ss_dssp CCBHHHHHHHHTCSS-CSTTSCCCBCCCEESCGGGCCT--TCEECCCBSS-SBGGGGHHHHHH-HTCSEEEESSCCC--S
T ss_pred CCcHHHHHHHhCCcc-cCCCccCceeeeEEEeCCCCCC--CCEEEEccCC-cchHHHHHHHHH-CCCEEEEECCCCC--C
Confidence 479999999999876 3 1 238999999999999 9999999999 999999999999 9999999998654 6
Q ss_pred ccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhc
Q 011395 101 KGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIG 180 (487)
Q Consensus 101 ~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~ 180 (487)
+|+|.|+ |++++|++|+.+++. ..+.++|+||||||||||++||+++|++.| ++..+.||+|+++|.|+++++
T Consensus 75 ~p~i~v~-----~~~~al~~la~~~~~-~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~~s~g~~n~~ig~p~t~~~ 147 (454)
T 2am1_A 75 HPYILVD-----DVLTAFQSLASYYLE-KTTVDVFAVTGSNGKTTTKDMLAHLLSTRY-KTYKTQGNYNNEIGLPYTVLH 147 (454)
T ss_dssp SCEEECS-----CHHHHHHHHHHHHHH-HHCCEEEEEECCCSSSCHHHHHHHHHTTTS-CEEECCTTCCSTTHHHHHHHT
T ss_pred CCEEEEC-----CHHHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEeecCCccCcccchHHHHhc
Confidence 8999999 999999999996654 336899999999999999999999997777 567899999999999999999
Q ss_pred CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhh
Q 011395 181 IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANL 260 (487)
Q Consensus 181 ~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~ 260 (487)
+..+++++|+|+|+++.+++.+++++++|+++|||||++||+++|||+|+|+++|++||+.+++++.+|+|.|| ....+
T Consensus 148 ~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~~ 226 (454)
T 2am1_A 148 MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADP-IVEDY 226 (454)
T ss_dssp CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGGG
T ss_pred CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHHH
Confidence 88899999999999999999999888899999999999999999999999999999999998889999999999 77666
Q ss_pred cCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHh
Q 011395 261 TVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISL 340 (487)
Q Consensus 261 ~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L 340 (487)
... ++++++||.+..+|+ .+ +.....+..|.+..++. .+.++++|.||++|+++|++++..+|++++.|+++|
T Consensus 227 ~~~-~~~~~~~g~~~~~d~--~~--i~~~~~~~~~~~~~~~~--~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L 299 (454)
T 2am1_A 227 LPI-DKKVVRFGQGAELEI--TD--LVERKDSLTFKANFLEQ--ALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAF 299 (454)
T ss_dssp CCS-SSEEEEESTTSSBCE--EE--EEECSSCEEEEETTCSS--EEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHG
T ss_pred Hhc-CCcEEEEeCCCCCce--ee--eEEeCCceEEEEEecCc--EEEecCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 533 468999998766676 55 66666677887754322 688999999999999999999999999999999999
Q ss_pred cCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccC---CcEEEEEcCCCCCCcccHHHHHHHHHHHHHc
Q 011395 341 SNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACN---GKRVVILGDMLELGSTERESHEKILSYCCDA 417 (487)
Q Consensus 341 ~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~---~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~ 417 (487)
++|+++|||||++...+++++|||||||||+|+++++++++++. . +|+++|||+|.|+|+++++.|++|++.+.+.
T Consensus 300 ~~~~~~~gR~e~~~~~~~~~iiDDsyahnp~s~~~~l~~l~~~~-~~~~~~~i~V~G~~~e~G~~~~~~~~~~~~~~~~~ 378 (454)
T 2am1_A 300 QHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP-ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPD 378 (454)
T ss_dssp GGCCCCCCCSCEECCTTTCEEEEECSCCSHHHHHHHHHHHTTSC-CCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTT
T ss_pred HhCCCccCCeeEEECCCCeEEEEeCCCCCHHHHHHHHHHHHhcc-cccCCCEEEEECCchhcCcHHHHHHHHHHHHHHhc
Confidence 99999999999998756788999999999999999999998875 4 6899999999999999999999999988775
Q ss_pred CCCEEEEECccHHHHHHHhhhhc--CC-eEE----EECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHHH
Q 011395 418 CIDLIGLVGDRFRAAAENMNLIK--TD-YIV----VTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVIK 485 (487)
Q Consensus 418 ~~d~vi~~g~~~~~i~~~~~~~~--~~-~~~----~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l~ 485 (487)
.+|.+|++|++++.+.+.+.... .. ... .++|+++|++.+.+.+++||+||++||+++.||++++.|+
T Consensus 379 ~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~GS~~~~~e~~~~~l~ 453 (454)
T 2am1_A 379 VLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLE 453 (454)
T ss_dssp TCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHhhccccCcceeeecccCCCCHHHHHHHHHHhCCCCCEEEEEeCCcCCHHHHHHHHh
Confidence 68999999999988877654321 11 111 3579999999999999999999999999999999999875
No 3
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=5.2e-77 Score=633.30 Aligned_cols=437 Identities=20% Similarity=0.215 Sum_probs=359.4
Q ss_pred cceeecCCCCCccCHHHHHHHhCCeecc---------CCCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcC
Q 011395 15 KTTFRCPSNSPIWTINEIAESVNGKILK---------WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGK 85 (487)
Q Consensus 15 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~ 85 (487)
.+..| |..+++|++++|++.+++.+.. +..|++|++|||+|+| |+||||++|+++|||+|+++|++ +
T Consensus 23 ~~~~~-~~~m~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~dGh~fi~~A~~-~ 98 (535)
T 2wtz_A 23 PTGLR-PNAVVGVRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSP--GDLFAALTGSTTHGARHVGDAIA-R 98 (535)
T ss_dssp ---CC-CSCCCCCBHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCT--TEEEEECBCSSCBGGGGHHHHHH-T
T ss_pred ccccC-CcccccccHHHHHhhccccccccccccccCCCcceeeEEecCCcCCC--CCEEEEeccccccHHHHHHHHHH-C
Confidence 33445 6666668999999999986431 2249999999999999 99999999999999999999999 9
Q ss_pred CceEEEecccc----CC-CCccEEEEcCCCCccHHHHHHHHHH-HHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCC
Q 011395 86 GCVGVIGNQVC----NN-WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGV 159 (487)
Q Consensus 86 Ga~~~v~~~~~----~~-~~~~~i~V~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~ 159 (487)
||.++|++++. .. +++|++.|+ |++++|+.|++ ++.+|+.++++|+||||||||||++||+++|++.|+
T Consensus 99 GA~avv~~~~~~~~~~~~~~~~~i~v~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~ 173 (535)
T 2wtz_A 99 GAVAVLTDPAGVAEIAGRAAVPVLVHP-----APRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGR 173 (535)
T ss_dssp TCCEEEECHHHHHHHCSCCSSCEEECS-----SSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEecCcccccccCCCceEEEEC-----CHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCC
Confidence 99999999742 11 158999999 99999999998 566677788999999999999999999999999998
Q ss_pred ceEecCCCCCCcch---hhhHh------------hc-CCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhh
Q 011395 160 NVFQSYGNWNNRVG---VALSL------------IG-IDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLE 223 (487)
Q Consensus 160 ~v~~t~g~~n~~~g---~p~~l------------~~-~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~ 223 (487)
+++ +.|+.++.++ +|.++ .. .+.+++++|+|+| ++.+++.++.. ++|+++|||||+.||++
T Consensus 174 ~~g-~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld 250 (535)
T 2wtz_A 174 VAG-LIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVS-SHALALGRVDG-TRFAVGAFTNLSRDHLD 250 (535)
T ss_dssp CEE-EESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CCEEEEEECCCCSCCTT
T ss_pred CEE-EECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECC-Ccccccccccc-CCcCEEEEcCCChHHhh
Confidence 875 4555554444 55432 22 2578999999998 56556667765 79999999999999999
Q ss_pred cCCCHHHHHHHHHhhcccCC--CCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCc-eEEEEeceEEec-CCeEEEEEee
Q 011395 224 SLGSLEDVARAKGEIFQESK--LGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG-GLGVQVVLEK 299 (487)
Q Consensus 224 ~~gs~e~~~~aK~~i~~~~~--~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~-d~~~~~~~i~~~-~~~~~~~~~~ 299 (487)
+|||+|+|+++|++||+.++ +++.+|+|.|||+...+.... .++++||.+..+ ++++.+ +... ..+..|.+..
T Consensus 251 ~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~-~~v~~~g~~~~~~d~~~~~--i~~~~~~g~~f~~~~ 327 (535)
T 2wtz_A 251 FHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARA-ADAITVSAADRPAHWRATD--VAPTDAGGQQFTAID 327 (535)
T ss_dssp TSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHH-SSCEEEESSSSCCSEEEEE--EEEETTTEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhc-CCEEEEecCCCcCcEEEEE--EEEcCCCCeEEEEEe
Confidence 99999999999999998775 678999999999887776211 168999987666 888887 7766 6677888765
Q ss_pred c-ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHH
Q 011395 300 E-REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID 378 (487)
Q Consensus 300 ~-~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~ 378 (487)
. +....+.++++|.||++|+++|++++..+|++++.|+++|++|+ +|||||++...+++++|+| |||||+||+++|+
T Consensus 328 ~~~~~~~~~l~l~G~hnv~NalaAia~a~~lGi~~~~i~~~L~~~~-~~gR~e~v~~~~~~~viiD-yahNP~s~~aal~ 405 (535)
T 2wtz_A 328 PAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQIDRGQGFLALVD-YAHKPEALRSVLT 405 (535)
T ss_dssp TTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECCSSCSSEEEEE-CCCSHHHHHHHHH
T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCC-CCCceEEEEcCCCcEEEEE-CCCCHHHHHHHHH
Confidence 3 23127899999999999999999999999999999999999999 9999999987557789999 9999999999999
Q ss_pred HHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccH-----HHHHHHhhhhcC-----CeEEEEC
Q 011395 379 LLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRF-----RAAAENMNLIKT-----DYIVVTN 448 (487)
Q Consensus 379 ~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~-----~~i~~~~~~~~~-----~~~~~~~ 448 (487)
+++ +. .+|+++|||+| |+++...+..|++.+... +|.++++++++ ..+.+.+..+.. ..+.+++
T Consensus 406 ~l~-~~-~~r~i~V~G~~---gdr~~~~~~~~~~~a~~~-~d~vi~~~~~~r~e~~~~i~~~i~~g~~~~~~~~~~~~~~ 479 (535)
T 2wtz_A 406 TLA-HP-DRRLAVVFGAG---GDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIA 479 (535)
T ss_dssp TTC-CS-SSCEEEEECCC---TTSCGGGHHHHHHHHHHH-CSEEEECCSCCTTSCHHHHHHHHHHHHTTCC-CCEEEECC
T ss_pred Hhh-CC-CCcEEEEECCC---CccchhhHHHHHHHHHhc-CCEEEEcCCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEC
Confidence 998 54 57899999984 555555667788888765 89999997665 566655433221 2466789
Q ss_pred CHHHHHHHHHhhCCCCCEEEEecCCC
Q 011395 449 DAEILSQKIVKRLKSNDVVLVKGSRA 474 (487)
Q Consensus 449 d~~~ai~~l~~~~~~~d~vLv~GSr~ 474 (487)
|+++|++.+.+.+++||+||++||..
T Consensus 480 d~~~Ai~~a~~~a~~gD~VLv~GsGh 505 (535)
T 2wtz_A 480 DRRDAIRHAVAWARPGDVVLIAGKGH 505 (535)
T ss_dssp SHHHHHHHHHHHCCTTCEEEEESCTT
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 99999999999999999999999943
No 4
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=4.2e-75 Score=614.57 Aligned_cols=424 Identities=20% Similarity=0.201 Sum_probs=343.9
Q ss_pred CHHHHHHHhCCeecc-CCCCCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC--------
Q 011395 28 TINEIAESVNGKILK-WGPPGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-------- 98 (487)
Q Consensus 28 ~l~~l~~~~~~~~~~-~~~~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~-------- 98 (487)
++.+|++.+.. .+ +..|++|++|||+|+| |+||||+||+++|||+|+++|++ +||.++|++++...
T Consensus 4 ~~~~l~~~~~~--~~~~~~i~~v~~DSR~v~~--g~lFval~G~~~DGh~fi~~A~~-~GA~avv~~~~~~~~~~e~~~~ 78 (498)
T 1e8c_A 4 NLRDLLAPWVP--DAPSRALREMTLDSRVAAA--GDLFVAVVGHQADGRRYIPQAIA-QGVAAIIAEAKDEATDGEIREM 78 (498)
T ss_dssp BHHHHHTTTCT--TCCCCBCCCEESCGGGCCT--TCEEEECBCSSCBGGGGHHHHHH-TTCSEEEEECTTTCCTTCEEEE
T ss_pred hHHHHHhhccc--CCCCceeeeEEeeCcCCCC--CCEEEEecCCcCCHHHHHHHHHH-CCCeEEEEcCcccccccccccc
Confidence 46666654331 11 2349999999999999 99999999999999999999999 99999999976311
Q ss_pred CCccEEEEcCCCCccHHHHHHHHHH-HHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCCCCCCcchhh
Q 011395 99 WDKGFVQVEGNGNVNTLNSLVNMAC-YARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYGNWNNRVGVA 175 (487)
Q Consensus 99 ~~~~~i~V~~~~~~d~~~aL~~la~-~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g~~n~~~g~p 175 (487)
.++|+|.|+ |++++|+.|++ ++++|+.+.++|+||||||||||++||+++|++.|++++ ++.++.++..++|
T Consensus 79 ~~~~~i~V~-----d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~ 153 (498)
T 1e8c_A 79 HGVPVIYLS-----QLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIP 153 (498)
T ss_dssp TTEEEEEET-----THHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBC
T ss_pred CCccEEEEC-----CHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeee
Confidence 157999999 99999999999 666777889999999999999999999999999998864 3444433333343
Q ss_pred --------hH----hhcC-CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccC
Q 011395 176 --------LS----LIGI-DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQES 242 (487)
Q Consensus 176 --------~~----l~~~-~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~ 242 (487)
.+ +..+ +.+++++|+|+| ++.+++.++.. ++|+++|||||++||+++|||+|+|+++|++||+.
T Consensus 154 ~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvg-s~~l~~~rl~~-~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~- 230 (498)
T 1e8c_A 154 TENTTGSAVDVQHELAGLVDQGATFCAMEVS-SHGLVQHRVAA-LKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE- 230 (498)
T ss_dssp CSSSSCCHHHHHHHHHHHHHTTCCEEEEECC-HHHHHTTTTTT-CBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCCEEEEEcC-Cchhhcccccc-cCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-
Confidence 11 2222 678999999998 55555566665 69999999999999999999999999999999987
Q ss_pred CCCCeEEEcCCcHHHHhhcCCCCC---cEEEEeCCCCc---eEEEEeceEEecCCeEEEEEeec-ceEEEEEeCCCchhh
Q 011395 243 KLGDVCVLNADDPLVANLTVPRGV---RKVFFGWRRGC---DVRLVAAQVANGGLGVQVVLEKE-REMVKFVIPSPGLHL 315 (487)
Q Consensus 243 ~~~~~~vln~Dd~~~~~~~~~~~~---~vi~~g~~~~~---d~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~l~l~G~~n 315 (487)
++++.+|+|.|||....+...... ++++||.+..+ ++++.+ +.....+..|.+... +.. .+.++++|.||
T Consensus 231 ~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~~~~~~~d~~~~~--~~~~~~g~~f~~~~~~~~~-~~~l~l~G~hn 307 (498)
T 1e8c_A 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATE--VNYHDSGATIRFSSSWGDG-EIESHLMGAFN 307 (498)
T ss_dssp SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCCTTTCSEEEEEEE--EEECSSCEEEEEEETTCCE-EEEECSCSHHH
T ss_pred CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecCCCCCcCCEEEEE--EEEcCCceEEEEEECCceE-EEEecCCcHHH
Confidence 678999999999998877622112 78889876656 888888 777777778887653 233 78999999999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcC
Q 011395 316 AINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGD 395 (487)
Q Consensus 316 v~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~ 395 (487)
++|+++|++++..+|++++.|+++|++|+++|||||++...++++||+| |||||+||++++++++++. .+|+++|||+
T Consensus 308 v~NalaAia~~~~lGi~~~~i~~~L~~~~~~~gR~e~v~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~-~~r~i~V~G~ 385 (498)
T 1e8c_A 308 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVD-YAHTPDALEKALQAARLHC-AGKLWCVFGC 385 (498)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHGGGCCCCTTSSEEECCTTSCEEEEE-CCCSHHHHHHHHHHHHHTC-SSCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEcCCCCEEEEE-CCCCHHHHHHHHHHHHhhC-CCCEEEEECC
Confidence 9999999999999999999999999999999999999986457799999 9999999999999999875 4789999996
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCEEEEECccH-----HHHHHHhhhhcCC--eEEEECCHHHHHHHHHhhCCCCCEEE
Q 011395 396 MLELGSTERESHEKILSYCCDACIDLIGLVGDRF-----RAAAENMNLIKTD--YIVVTNDAEILSQKIVKRLKSNDVVL 468 (487)
Q Consensus 396 m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~-----~~i~~~~~~~~~~--~~~~~~d~~~ai~~l~~~~~~~d~vL 468 (487)
.|+++...+..|++.+... +|.++++++++ ..+.+.+..+... .+.+++|+++|++.+.+.+++||+||
T Consensus 386 ---g~dr~~~~~~~~~~~~~~~-~d~vi~~~~~~r~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~a~~gd~VL 461 (498)
T 1e8c_A 386 ---GGDRDKGKRPLMGAIAEEF-ADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVL 461 (498)
T ss_dssp ---CSSSCSTHHHHHHHHHHHH-CSEEEECCSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEE
T ss_pred ---CCCcchhHHHHHHHHHHhC-CCEEEEcCCCCCCCCHHHHHHHHHhhccccCceEEECCHHHHHHHHHHhCCCCCEEE
Confidence 3444333344677766555 89999987654 6677766443211 34678999999999999999999999
Q ss_pred EecCC
Q 011395 469 VKGSR 473 (487)
Q Consensus 469 v~GSr 473 (487)
++|+.
T Consensus 462 v~GkG 466 (498)
T 1e8c_A 462 VAGKG 466 (498)
T ss_dssp EESCT
T ss_pred EecCC
Confidence 98773
No 5
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=5e-56 Score=470.66 Aligned_cols=377 Identities=15% Similarity=0.131 Sum_probs=285.3
Q ss_pred CCceEEEeccccCC--C--------CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHH
Q 011395 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 85 ~Ga~~~v~~~~~~~--~--------~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (487)
.++..||+++.++. | ++|++.-. +.++.... ...++|+||||||||||++||+++|
T Consensus 79 ~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~-----------e~l~~~~~---~~~~vIaVTGTnGKTTTt~li~~iL 144 (524)
T 3hn7_A 79 PAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGP-----------QFLSEQVL---QSRHVIAVAGTHGKTTTTTMLAWIL 144 (524)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHH-----------HHHHHHTG---GGSEEEEEECSSCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHH-----------HHHHHHHh---ccCcEEEEECCCCHHHHHHHHHHHH
Confidence 46778888876542 1 56766333 22333211 1268999999999999999999999
Q ss_pred HhCCCceE----------ecCCCCCCcchhhhHhhcCC------CCCcEEEEeccCCCcchHHhhccc--cCCcEEEEcC
Q 011395 155 ESLGVNVF----------QSYGNWNNRVGVALSLIGID------RAVDIAVLEMGMSGKGEILELARM--ARPEIRVVLN 216 (487)
Q Consensus 155 ~~~g~~v~----------~t~g~~n~~~g~p~~l~~~~------~~~~~~V~E~g~~~~g~i~~~~~~--~~pdvaViTN 216 (487)
++.|+++. .|++|+|+.+|.|..+.+.+ .+++++|+|+|+++.+.+.++..+ ++|+++||||
T Consensus 145 ~~~G~~~~~~iGg~~~~~~T~~nln~~ig~~~~~~~~~~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTN 224 (524)
T 3hn7_A 145 HYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNN 224 (524)
T ss_dssp HHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECC
T ss_pred HHcCCCceEEECCEeccccCchhhhhhhhhHHhhCCCcccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcC
Confidence 99998763 23445667777776543322 346899999998877655444333 6999999999
Q ss_pred CChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhc-CCCCCcEEEEeCC--------------------C
Q 011395 217 VGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLT-VPRGVRKVFFGWR--------------------R 275 (487)
Q Consensus 217 I~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~-~~~~~~vi~~g~~--------------------~ 275 (487)
|++||||+|||+|+|+++|.++++.+++++.+|+|.|||.+..+. ....+++++||.+ .
T Consensus 225 I~~DHLd~~gs~e~y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~ 304 (524)
T 3hn7_A 225 LEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAEN 304 (524)
T ss_dssp CCCC------CHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------C
T ss_pred CChHHccccCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCC
Confidence 999999999999999999999999998999999999999988765 2223678999974 2
Q ss_pred CceEEEEeceEEecCCeEEEEEeecce---EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeE
Q 011395 276 GCDVRLVAAQVANGGLGVQVVLEKERE---MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSEL 352 (487)
Q Consensus 276 ~~d~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~ 352 (487)
.+++++.+ +. .++..|.+...+. ...+.++++|.||++|+++|++++..+|++++.|+++|++|++++||||+
T Consensus 305 ~~d~~~~~--i~--~~g~~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~~~~~~gR~e~ 380 (524)
T 3hn7_A 305 SSDWQAEL--IS--ADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVSVKTACAALSAFAGIKRRMEL 380 (524)
T ss_dssp CCSEEEEE--EE--TTTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEE
T ss_pred CCcEEEEE--EE--CCceEEEEEECCccceeEEEEeCCCcHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCCCCceEEE
Confidence 56787776 64 3456676654432 23789999999999999999999999999999999999999999999999
Q ss_pred EeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCC---CCCCcccHHHHHHHHHHHHHcCCCEEEEECcc-
Q 011395 353 LVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDM---LELGSTERESHEKILSYCCDACIDLIGLVGDR- 428 (487)
Q Consensus 353 ~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m---~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~- 428 (487)
+...+++++|+| |||||+|+++++++++++.+.+|+++|||++ .+.|+..+..+ ..+ +. +|.+|++|+.
T Consensus 381 ~~~~~g~~vi~D-~ahnp~~~~a~l~~l~~~~~~~r~i~V~g~~~~~~~~g~~~~~~~----~~~-~~-aD~vil~~~~~ 453 (524)
T 3hn7_A 381 IGDVNDILVFDD-FAHHPTAITTTLDGAKKKLADRRLWAIIEPRSNTMKMGIHQDSLA----QSA-TL-ADHTLWYEPTG 453 (524)
T ss_dssp EEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEEECCCCSSCCSCCTTHHH----HHT-TT-SSEEEEECCTT
T ss_pred EEecCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCCEEEEECCCCcchhhhhhHHHHH----HHH-hc-CCEEEEcCCCC
Confidence 986688999999 7899999999999999875457899999985 34555544433 223 33 8999999976
Q ss_pred ----HHHHHHHhhhhc--CCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCC--cHHHHHHHHHh
Q 011395 429 ----FRAAAENMNLIK--TDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAM--QMEKVVDVIKA 486 (487)
Q Consensus 429 ----~~~i~~~~~~~~--~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~--~~e~~~~~l~~ 486 (487)
+..+.+.+.... ...+.+++|+++|++.+.+.+++||+||++|+++. --+++++.|++
T Consensus 454 r~~~~~~l~~~~~~~~~~~~~~~~~~~~~eai~~~~~~a~~gD~VLv~GaG~~~~v~~~~~~~l~~ 519 (524)
T 3hn7_A 454 LEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGFEGIHQRLLTALGN 519 (524)
T ss_dssp CCCSHHHHHHHHHHHCGGGCCEEEESCHHHHHHHHHHHCCTTCEEEEEESSCGGGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccCCCCeEEECCHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHHh
Confidence 456666663221 13577899999999999999999999999987654 44667666653
No 6
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=4.4e-56 Score=466.87 Aligned_cols=375 Identities=19% Similarity=0.268 Sum_probs=293.7
Q ss_pred CcccchHHhhhcCCceEEEeccccCC--C--------CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 011395 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (487)
Q Consensus 73 dgh~~~~~A~~~~Ga~~~v~~~~~~~--~--------~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnG 142 (487)
+||++ +.+ +||.++|+++..+. | ++|++.+. +. ++...+. .++|+||||||
T Consensus 68 ~g~~~--~~~--~~a~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~-----~~------l~~~~~~----~~vI~VTGTnG 128 (475)
T 1p3d_A 68 IGHAE--EHI--EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRA-----QM------LAEIMRF----RHGIAVAGTHG 128 (475)
T ss_dssp ESCCG--GGG--TTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHHT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHhcC----CCEEEEECCCC
Confidence 46765 234 58999999986542 1 57888666 42 3433343 58999999999
Q ss_pred hHhHHHHHHHHHHhCCCce-EecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhh
Q 011395 143 KSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (487)
Q Consensus 143 KTTT~~ml~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dH 221 (487)
||||++||+++|++.|+++ ....|+.+ .++.+.+ ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 129 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 198 (475)
T 1p3d_A 129 KTTTTAMISMIYTQAKLDPTFVNGGLVK-SAGKNAH----LGASRYLIAEADESDAS-----FLHLQPMVSVVTNMEPDH 198 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCccc-ccccccc----cCCCCEEEEEecCCcCc-----cccccCCEEEEcCCChhh
Confidence 9999999999999999874 33455655 4444332 24689999999976542 224699999999999999
Q ss_pred hhcC-CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeec
Q 011395 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (487)
Q Consensus 222 l~~~-gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 300 (487)
+++| +|+|+|+++|.+++..+++++.+|+|.|||.+..+.....+++++||.+..+++++.+ +.....+..|.+...
T Consensus 199 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~ 276 (475)
T 1p3d_A 199 MDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIED--YEQTGFQGHYTVICP 276 (475)
T ss_dssp GGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECT
T ss_pred hhhhcCCHHHHHHHHHHHHhhCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEE--EEEcCCceEEEEEEC
Confidence 9999 8999999999999999988999999999998877762112689999987777888887 776666777877542
Q ss_pred -ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec----CCeEEEEecCCCCHHHHHH
Q 011395 301 -REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR----SGIKIVNDAYNANPISTRA 375 (487)
Q Consensus 301 -~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~----~~~~ii~Dsya~np~s~~~ 375 (487)
+....+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++... +++++|+| |||||+++++
T Consensus 277 ~~~~~~~~l~l~G~hn~~NalaAia~~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a 355 (475)
T 1p3d_A 277 NNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGV 355 (475)
T ss_dssp TCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHH
T ss_pred CCeEEEEEEcCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHH
Confidence 22227899999999999999999999999999999999999999999999999863 27899999 9999999999
Q ss_pred HHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE-----------CccHHHHHHHhhhhcCCeE
Q 011395 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV-----------GDRFRAAAENMNLIKTDYI 444 (487)
Q Consensus 376 ~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~-----------g~~~~~i~~~~~~~~~~~~ 444 (487)
++++++...+.+|+++|+|++ .+.+++..+.++++.+. . +|.+|++ |..++.+.+.+...+...+
T Consensus 356 ~l~al~~~~~~~~i~~v~g~~--~~~r~~~~~~~~~~~~~-~-~d~vi~t~~~~~~e~~~~g~~~~~l~~~~~~~~~~~~ 431 (475)
T 1p3d_A 356 TIKAAREGWGDKRIVMIFQPH--RYSRTRDLFDDFVQVLS-Q-VDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDP 431 (475)
T ss_dssp HHHHHHHHHCSSCEEEEECCB--CHHHHHHTHHHHHHHHT-T-SSEEEEECCBCTTCCCCTTCSHHHHHHHHHHHTSCCC
T ss_pred HHHHHHhhcCCCeEEEEECCC--CCccHHHHHHHHHHHHH-h-CCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhhCCCce
Confidence 999999764246788999853 12334455788998775 3 8999996 3455778877754321235
Q ss_pred EEECCHHHHHHHHHhhCCCCCEEEEecCCCCcH--HHHHHH
Q 011395 445 VVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQM--EKVVDV 483 (487)
Q Consensus 445 ~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~--e~~~~~ 483 (487)
.+++|+++|++.+.+.+++||+||++||.+..+ +.+++.
T Consensus 432 ~~~~~~~~ai~~a~~~a~~gd~VLv~G~Gs~~~v~~~l~~~ 472 (475)
T 1p3d_A 432 ILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAES 472 (475)
T ss_dssp EEESCGGGHHHHHHHHCCTTCEEEEECSSTHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 678999999999999999999999998876544 444443
No 7
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.4e-55 Score=464.60 Aligned_cols=374 Identities=20% Similarity=0.264 Sum_probs=289.7
Q ss_pred CcccchHHhhhcCCceEEEeccccCC--C--------CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Q 011395 73 DAHEFISPELYGKGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVG 142 (487)
Q Consensus 73 dgh~~~~~A~~~~Ga~~~v~~~~~~~--~--------~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnG 142 (487)
+||++ +.+ +||.++|+++..+. | ++|++.+. +. ++...+. .++|+||||||
T Consensus 69 ~g~~~--~~~--~~a~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~-----~~------l~~~~~~----~~vI~VTGTnG 129 (491)
T 2f00_A 69 FNHRP--ENV--RDASVVVVSSAISADNPEIVAAHEARIPVIRRA-----EM------LAELMRF----RHGIAIAGTHG 129 (491)
T ss_dssp SSCCG--GGG--TTCSEEEECTTCCTTCHHHHHHHHTTCCEEEHH-----HH------HHHHHTT----SEEEEEESSSC
T ss_pred CCCCH--HHc--CCCCEEEECCCCCCCCHHHHHHHHcCCcEEEHH-----HH------HHHHHcC----CCEEEEECCCC
Confidence 57766 234 58999999986542 1 57888666 42 3444343 58999999999
Q ss_pred hHhHHHHHHHHHHhCCCce-EecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhh
Q 011395 143 KSTTKSMIALALESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (487)
Q Consensus 143 KTTT~~ml~~iL~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dH 221 (487)
||||++||+++|++.|+++ ....|+.+ .++.+.+ ..+++++|+|+|+++.. ...++|+++|||||++||
T Consensus 130 KTTTt~ml~~iL~~~G~~p~~~igg~~~-~~~~~~~----~~~~d~~VlE~~~~~~~-----~~~~~p~vaviTNI~~DH 199 (491)
T 2f00_A 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK-AAGVHAR----LGHGRYLIAEADESDAS-----FLHLQPMVAIVTNIEADH 199 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEET-TTTEEEE----CCSSSEEEEECCCTTSG-----GGGCCCSEEEECCCCSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCeec-ccccccc----CCCCCEEEEEeCCCccc-----hhcCCCCEEEEcCCChhh
Confidence 9999999999999999874 34455655 3444332 24689999999976642 124699999999999999
Q ss_pred hhcC-CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeec
Q 011395 222 LESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKE 300 (487)
Q Consensus 222 l~~~-gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~ 300 (487)
+++| +|+|+|+++|.+++..+++++.+|+|.|||....+....++++++||.+..+++++.+ +.....+..|.+...
T Consensus 200 ld~~G~t~e~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~~~~~~~ 277 (491)
T 2f00_A 200 MDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVED--YQQIGPQGHFTLLRQ 277 (491)
T ss_dssp GGGTTTCHHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEE--EEEETTEEEEEEECT
T ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEE--EEEcCCceEEEEEEC
Confidence 9999 8999999999999999988999999999999888773223689999987777888887 776666777877542
Q ss_pred -ceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec--------CC-eEEEEecCCCCH
Q 011395 301 -REMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR--------SG-IKIVNDAYNANP 370 (487)
Q Consensus 301 -~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~--------~~-~~ii~Dsya~np 370 (487)
+....+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++... ++ ++||+| |||||
T Consensus 278 ~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp 356 (491)
T 2f00_A 278 DKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHP 356 (491)
T ss_dssp TSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSH
T ss_pred CceEEEEEEccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCH
Confidence 22127899999999999999999999999999999999999999999999999862 27 899999 99999
Q ss_pred HHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE-----------CccHHHHHHHhhhh
Q 011395 371 ISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV-----------GDRFRAAAENMNLI 439 (487)
Q Consensus 371 ~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~-----------g~~~~~i~~~~~~~ 439 (487)
+++++++++++...+.+|+++|+|++ .+.+++..+.++++.+. . +|.+|++ |..++.+.+.+...
T Consensus 357 ~~~~a~l~al~~~~~~~~i~~v~g~~--~~~r~k~~~~~~~~~~~-~-~d~vilt~~~~~~e~~~~g~~~~~l~~~~~~~ 432 (491)
T 2f00_A 357 TEVDATIKAARAGWPDKNLVMLFQPH--RFTRTRDLYDDFANVLT-Q-VDTLLMLEVYPAGEAPIPGADSRSLCRTIRGR 432 (491)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEECCB--CHHHHTTTHHHHHHHHT-T-SSEEEECCCBCSSSCCCTTSSHHHHTTC----
T ss_pred HHHHHHHHHHHhhcCCCeEEEEECCC--CCcchHHHHHHHHHHHH-h-CCEEEEcCCcCCCCCCCCCCCHHHHHHHHHhh
Confidence 99999999999864246778888753 12333345788998775 3 8999986 34445666555332
Q ss_pred cCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHHH
Q 011395 440 KTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 440 ~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l 484 (487)
+...+.+++|+++|++.+.+.+++||+||++||++ |..+.+.|
T Consensus 433 ~~~~~~~~~~~~~ai~~a~~~a~~gd~VLv~gaGs--l~~v~~~l 475 (491)
T 2f00_A 433 GKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN--IGKIARSL 475 (491)
T ss_dssp ---CCEECCCSSCCHHHHGGGCCSEEEEEEECSTT--HHHHHHHH
T ss_pred CCCceEEeCCHHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHH
Confidence 11134567999999999999999999999999887 55555444
No 8
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=5.1e-57 Score=469.44 Aligned_cols=392 Identities=22% Similarity=0.248 Sum_probs=302.5
Q ss_pred CCeEEeeCCccccCCCCEEEEecCCcCC-cccchHHhhhcCCceEEEeccccCCCCccEEEE--cCCCCccHHHHHHHHH
Q 011395 46 PGIICTDTRILAPNKNQWFFAITGQHFD-AHEFISPELYGKGCVGVIGNQVCNNWDKGFVQV--EGNGNVNTLNSLVNMA 122 (487)
Q Consensus 46 ~~~i~~dsr~v~~~~g~lFva~~G~~~d-gh~~~~~A~~~~Ga~~~v~~~~~~~~~~~~i~V--~~~~~~d~~~aL~~la 122 (487)
..-..+|+|...+ +..|++ +|.+++ ||.+ .++++ |+.++|+++..+. +.|.+.+ + +...++.+++
T Consensus 29 ~~v~~~D~~~~~~--~~~~l~-~G~~~~~g~~~-~~~~~--~~d~vV~s~gi~~-~~p~~~~a~~-----~~~~v~~~~~ 96 (439)
T 2x5o_A 29 VTPRVMDTRMTPP--GLDKLP-EAVERHTGSLN-DEWLM--AADLIVASPGIAL-AHPSLSAAAD-----AGIEIVGDIE 96 (439)
T ss_dssp CCCEEEESSSSCT--TGGGSC-TTSCEEESSCC-HHHHH--TCSEEEECTTSCT-TCHHHHHHHH-----TTCEEECHHH
T ss_pred CEEEEEECCCCcc--hhHHhh-CCCEEEECCCc-HHHhc--cCCEEEeCCCCCC-CCHHHHHHHH-----CCCcEEEHHH
Confidence 3445699999998 888888 999987 8855 66775 8999999987542 2333333 2 2222334444
Q ss_pred HHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHh
Q 011395 123 CYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILE 202 (487)
Q Consensus 123 ~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~ 202 (487)
.+++. .+.++|+||||||||||++||+++|++.|+++. +.|| +|.|++... .++.|++|+|+|+ +.++.
T Consensus 97 ~~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~-~~gn----ig~~~~~~~-~~~~d~~VlE~~~---~~l~~ 165 (439)
T 2x5o_A 97 LFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVG-VGGN----IGLPALMLL-DDECELYVLELSS---FQLET 165 (439)
T ss_dssp HHHHH--CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE-EEES----SSBCHHHHC-CTTCCEEEEECCH---HHHHT
T ss_pred HHHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEE-Eecc----cCHHHHHHh-CCCCCEEEEECCc---hhhcc
Confidence 44444 247899999999999999999999999999876 5565 677775443 2356999999986 23454
Q ss_pred hccccCCcEEEEcCCChhhhhcC-CCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEE
Q 011395 203 LARMARPEIRVVLNVGDSHLESL-GSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRL 281 (487)
Q Consensus 203 ~~~~~~pdvaViTNI~~dHl~~~-gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~ 281 (487)
++.++|+++|||||++||+++| +|+|+|+++|.+|++. ++.+|+|.|||....+... .+++++||.+.. ++.
T Consensus 166 -~~~~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V~n~dd~~~~~~~~~-~~~~~~~g~~~~-~~~- 238 (439)
T 2x5o_A 166 -TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRGA-DERCVSFGVNMG-DYH- 238 (439)
T ss_dssp -CCCCCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEETTCGGGSCSCCC-SSCCEEECSSSS-SEE-
T ss_pred -cccCCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEEEeCCCHHHHHHhhc-CCcEEEEeCCCc-CcC-
Confidence 4568999999999999999999 8899999999999964 6899999999988776632 368899997532 221
Q ss_pred EeceEEecCCeEEEEEeecceEE-EEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeE
Q 011395 282 VAAQVANGGLGVQVVLEKEREMV-KFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIK 360 (487)
Q Consensus 282 ~~~~i~~~~~~~~~~~~~~~~~~-~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ 360 (487)
+ +.... + .+.+....... .+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...++++
T Consensus 239 -~--~~~~~-~-~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~lgi~~~~i~~~L~~f~~~~gR~e~~~~~~~~~ 313 (439)
T 2x5o_A 239 -L--NHQQG-E-TWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVR 313 (439)
T ss_dssp -E--EEETT-E-EEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTEE
T ss_pred -c--EEEEC-C-EEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCceEEEEEECCEE
Confidence 1 22222 2 13332111111 24689999999999999999999999999999999999999999999998767899
Q ss_pred EEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhc
Q 011395 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIK 440 (487)
Q Consensus 361 ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~ 440 (487)
+|+|+|||||+|++++++.++. .+|+++|+|+|.+.++. +++++.+.. .+|.+|++|+.+..+.+ +...
T Consensus 314 vi~Ds~a~np~a~~~al~~l~~---~~~~i~v~g~~~k~~~~-----~~~~~~l~~-~~d~vi~~g~~~~~~~~-~~~~- 382 (439)
T 2x5o_A 314 WINDSKATNVGSTEAALNGLHV---DGTLHLLLGGDGKSADF-----SPLARYLNG-DNVRLYCFGRDGAQLAA-LRPE- 382 (439)
T ss_dssp EEECTTCCSHHHHHHHHTTCCC---SSCEEEEEESBCTTCCC-----GGGGGGSCS-SSEEEEEESTTHHHHHT-TSGG-
T ss_pred EEEeCCCCCHHHHHHHHHhCCc---CCCEEEEEcCCCCCCCH-----HHHHHHHHh-hCCEEEEECCCHHHHHH-HhcC-
Confidence 9999999999999999998854 36899999987655443 356666654 38999999999888877 5322
Q ss_pred CCeEEEECCHHHHHHHHHhhCCCCCEEEEe---cC---------CCCcHHHHHHHHH
Q 011395 441 TDYIVVTNDAEILSQKIVKRLKSNDVVLVK---GS---------RAMQMEKVVDVIK 485 (487)
Q Consensus 441 ~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~---GS---------r~~~~e~~~~~l~ 485 (487)
.+.+++|+++|++.+.+.+++||+||++ || ||..|+++++.|.
T Consensus 383 --~~~~~~~~~~a~~~~~~~~~~gd~vL~~~a~~S~~~~~~~~~RG~~f~~~v~~l~ 437 (439)
T 2x5o_A 383 --VAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG 437 (439)
T ss_dssp --GEEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHHHHHHHT
T ss_pred --CccccCCHHHHHHHHHHhCCCCCEEEEcchhhHhhhhhCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999995 55 8889999998874
No 9
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=1e-54 Score=457.64 Aligned_cols=358 Identities=19% Similarity=0.271 Sum_probs=281.5
Q ss_pred CCceEEEeccccCC--C--------CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHH
Q 011395 85 KGCVGVIGNQVCNN--W--------DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 85 ~Ga~~~v~~~~~~~--~--------~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL 154 (487)
.++..||+++.++. | ++|++. + .+ .++.+.+. .++|+||||||||||++||+++|
T Consensus 80 ~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~-------~-~e---~l~~~~~~----~~~IaVTGTnGKTTTt~ml~~iL 144 (494)
T 4hv4_A 80 LDASVVVVSTAISADNPEIVAAREARIPVIR-------R-AE---MLAELMRY----RHGIAVAGTHGKTTTTAMLSSIY 144 (494)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHHTTCCEEE-------H-HH---HHHHHHTT----SEEEEEECSSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEc-------H-HH---HHHHHhcC----CCEEEEecCCChHHHHHHHHHHH
Confidence 36888888876543 1 566652 1 22 23334333 47999999999999999999999
Q ss_pred HhCCCce-EecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcC-CCHHHHH
Q 011395 155 ESLGVNV-FQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESL-GSLEDVA 232 (487)
Q Consensus 155 ~~~g~~v-~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~-gs~e~~~ 232 (487)
++.|+++ ....|+.| .+|.+.. + .+.+++|+|+|+++.. ...++|+++|||||++||+++| +|+|+|+
T Consensus 145 ~~~g~~~~~~~gg~~~-~~g~~~~---~-~~~d~~VlE~~e~~~s-----~~~~~P~iaVITNI~~DHld~~G~t~e~~a 214 (494)
T 4hv4_A 145 AEAGLDPTFVNGGLVK-AAGTHAR---L-GSSRYLIAEADESDAS-----FLHLQPMVAIVTNIEADHMDTYQGDFENLK 214 (494)
T ss_dssp HHTTCCCEEEEEEEET-TTTEEEE---C-CSSSEEEEECCCGGGG-----GGGCCCSEEEECCCCCSSCCSSTTHHHHHH
T ss_pred HhcCCCCEEEECCccc-ccccccc---c-CCCcEEEEEccccccc-----cccccCCEEEEcCCCHHHhhhhccCHHHHH
Confidence 9999864 33334433 3554432 2 4689999999976541 1247999999999999999999 7899999
Q ss_pred HHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecce-EEEEEeCCC
Q 011395 233 RAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE-MVKFVIPSP 311 (487)
Q Consensus 233 ~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~ 311 (487)
++|.+|++.+++++.+|+|.|||....+..+..+++++||.+..+|+++.+ +.....+..|.+...+. ...+.++++
T Consensus 215 ~aK~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~--~~~~~~~~~f~~~~~~~~~~~~~l~l~ 292 (494)
T 4hv4_A 215 QTFINFLHNLPFYGRAVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIAS--YRQEGPQGHFTLRRQDKPLIEVTLNAP 292 (494)
T ss_dssp HHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEE--EEEETTEEEEEEECTTSCCEEEEESSC
T ss_pred HHHHHHHhcCCCCCEEEEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEE--EEEeCCEEEEEEEECCceEEEEEecCC
Confidence 999999999988999999999999888773333789999998788999888 87777788888765421 237899999
Q ss_pred chhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeec---------CCeEEEEecCCCCHHHHHHHHHHHHc
Q 011395 312 GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSR---------SGIKIVNDAYNANPISTRAAIDLLKD 382 (487)
Q Consensus 312 G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~---------~~~~ii~Dsya~np~s~~~~l~~l~~ 382 (487)
|.||++|+++|++++..+|++.+.|+++|++|++++||||++... +++.+|+| |||||++++++++++++
T Consensus 293 G~hnv~NalaAia~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~ 371 (494)
T 4hv4_A 293 GRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARA 371 (494)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999863 48999999 99999999999999987
Q ss_pred cccCCcEEEEEcCCCCCCc-ccHHHHHHHHHHHHHcCCCEEEEEC-----------ccHHHHHHHhhhhcCCeEEEECCH
Q 011395 383 IACNGKRVVILGDMLELGS-TERESHEKILSYCCDACIDLIGLVG-----------DRFRAAAENMNLIKTDYIVVTNDA 450 (487)
Q Consensus 383 ~~~~~~~i~Vlg~m~e~G~-~~~~~~~~~~~~l~~~~~d~vi~~g-----------~~~~~i~~~~~~~~~~~~~~~~d~ 450 (487)
..+.+|+++|+|.+ +. +.+....++++.+. .+|.+|++. ..++.|.+.++..+...+.+++|+
T Consensus 372 ~~~~~rii~V~g~~---~~~r~k~~~~~~~~~~~--~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~~~g~~~~~~~~~~ 446 (494)
T 4hv4_A 372 GWPDKRIVMLFQPH---RYTRTRDLYDDFANVLS--QVDVLLMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDS 446 (494)
T ss_dssp HCTTSEEEEEECCB---CHHHHHHTHHHHHHHHT--TSSEEEEECCBCTTCCCCTTCSHHHHHHHHHTTTSCCCEEECCT
T ss_pred hcCCCeEEEEEcCC---CCCchHHHHHHHHHHHh--cCCEEEEeCCcCCccCCcCCccHHHHHHHHHhhCCCCeEEeCCH
Confidence 65345788888741 11 12233445666554 389999963 345778888865432346788999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 451 EILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 451 ~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
++|++.+.+.+++||+||++|+++.
T Consensus 447 ~eAv~~a~~~a~~gDvVL~~GaG~~ 471 (494)
T 4hv4_A 447 ESAPEMLAQILNGEDLILVQGAGNI 471 (494)
T ss_dssp TTHHHHHHHHCCTTEEEEEECSSTH
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCH
Confidence 9999999999999999999998763
No 10
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=1e-53 Score=445.96 Aligned_cols=325 Identities=26% Similarity=0.308 Sum_probs=263.5
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcC-CCCCcEEEEeccCCCcchHHhhccccCCc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGI-DRAVDIAVLEMGMSGKGEILELARMARPE 210 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~-~~~~~~~V~E~g~~~~g~i~~~~~~~~pd 210 (487)
.++|+||||||||||++||+++|+..|.++. ..|| +|.|++.... ..++|++|+|+|+.+ ++ ..+.++|+
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~-~~Gn----ig~~~~~~~~~~~~~d~~VlE~~s~~---l~-~~~~~~p~ 182 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGL-LAGN----IGFPASEVVQAANDKDTLVMELSSFQ---LM-GVKEFRPH 182 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEE-EEET----SSSCHHHHTTTCCTTCEEEEECCHHH---HT-TCSSCCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEE-Eeee----cChhhhhhhhcCCCCCEEEEECCccc---cc-cccccCCC
Confidence 5899999999999999999999999998774 4566 6777765543 357899999998532 23 34568999
Q ss_pred EEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCc-eEEEEeceEEec
Q 011395 211 IRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGC-DVRLVAAQVANG 289 (487)
Q Consensus 211 vaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~-d~~~~~~~i~~~ 289 (487)
++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+..+.++++++||.+... +++..+
T Consensus 183 iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------ 256 (451)
T 3lk7_A 183 IAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQD------ 256 (451)
T ss_dssp EEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEETTSHHHHHHHTTCSSEEEEEESSSCCSSEEEET------
T ss_pred EEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEEECCcHHHHHHHhhcCCeEEEEccCCCcCCEEEEC------
Confidence 9999999999999999999999999999999989999999999999888763334789999986532 233222
Q ss_pred CCeEEEEEeecceEEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCC
Q 011395 290 GLGVQVVLEKEREMVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNAN 369 (487)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~n 369 (487)
. .+.+.+......+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++...+++++|+|+||||
T Consensus 257 -~--~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~g~~vi~D~~a~n 333 (451)
T 3lk7_A 257 -K--QLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN 333 (451)
T ss_dssp -T--EEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCCTTSSEEEEEETTEEEEECTTCCS
T ss_pred -C--EEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcEEEEeeeCCcEEEEeCCCCC
Confidence 1 2222221001134689999999999999999999999999999999999999999999998768899999999999
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECC
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTND 449 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d 449 (487)
|+|+.++++.+. .+|+++|+|.+ +.+ +.++++++.+.. +|.+|++|+.+..+.+.+...+ ..+.+++|
T Consensus 334 p~a~~~al~~~~----~~rii~I~g~~-~r~----~d~~~l~~~l~~--~d~vi~~G~~~~~l~~~~~~~g-~~~~~~~~ 401 (451)
T 3lk7_A 334 ILATQKALSGFD----NTKVILIAGGL-DRG----NEFDELIPDITG--LKHMVVLGESASRVKRAAQKAG-VTYSDALD 401 (451)
T ss_dssp HHHHHHHHHTSC----GGGEEEEECCS-CCS----CCCGGGHHHHTT--CSEEEECSTTHHHHHHHHHHTT-CCEEECSS
T ss_pred HHHHHHHHHhCC----CCCEEEEECCC-CCC----CCHHHHHHHHHh--cCEEEEECCCHHHHHHHHHhcC-CceEEeCC
Confidence 999999987653 24588888753 222 234577777753 8999999999999988886554 24778899
Q ss_pred HHHHHHHHHhhCCCCCEEEEe---cC---------CCCcHHHHHHHHHh
Q 011395 450 AEILSQKIVKRLKSNDVVLVK---GS---------RAMQMEKVVDVIKA 486 (487)
Q Consensus 450 ~~~ai~~l~~~~~~~d~vLv~---GS---------r~~~~e~~~~~l~~ 486 (487)
+++|++.+.+.+++||+||++ +| ||..|+++++.|+.
T Consensus 402 ~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~~l~~ 450 (451)
T 3lk7_A 402 VRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFESLRG 450 (451)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999 45 99999999998864
No 11
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=5e-54 Score=445.65 Aligned_cols=340 Identities=21% Similarity=0.244 Sum_probs=260.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEe--cC--CCCCCc-----------------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQ--SY--GNWNNR----------------- 171 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~--t~--g~~n~~----------------- 171 (487)
+++++|+.|+.+. .+.++|+||||||||||++||+++|++.|++|+. ++ .++|++
T Consensus 24 ~~~~~l~~lg~p~----~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~ 99 (428)
T 1jbw_A 24 RILTLLHALGNPQ----QQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAV 99 (428)
T ss_dssp HHHHHHHHTTCGG----GSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCCch----hcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHH
Confidence 9999999887644 4479999999999999999999999999999863 32 344432
Q ss_pred ---------ch-----hhhHhhcC----------CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-
Q 011395 172 ---------VG-----VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG- 226 (487)
Q Consensus 172 ---------~g-----~p~~l~~~----------~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g- 226 (487)
+| .|+|++++ +.++|++|+|+|+++..+ .+++++|+++|||||+.||+++||
T Consensus 100 ~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~p~vaviTnI~~DHld~~g~ 176 (428)
T 1jbw_A 100 AFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTD---STNVITPVVSVLTEVALDHQKLLGH 176 (428)
T ss_dssp HHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTS---TTCSCCCSEEEECCCCSCCHHHHCS
T ss_pred HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccc---ccccCCCCEEEECcCcHhhhhhhCC
Confidence 34 56666654 678999999999875533 467789999999999999999999
Q ss_pred CHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC----CCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecce
Q 011395 227 SLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKERE 302 (487)
Q Consensus 227 s~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~ 302 (487)
|+|+|+++|++|++ +++.+|+|.||+....++. ..++++++|+. ++.+.. ......+..|.+...+.
T Consensus 177 t~e~ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~--~~~~~~~~~~~~~~~~~ 247 (428)
T 1jbw_A 177 TITAIAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR----DFSVPK--AKLHGWGQRFTYEDQDG 247 (428)
T ss_dssp SHHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TEEEEE--EEECSSSEEEEEEETTE
T ss_pred CHHHHHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCc----cceeec--cccccCCceEEEecCCc
Confidence 89999999999995 5889999999997765441 11367888885 455444 44444556677654422
Q ss_pred EE-EEEeCCCchhhHHHHHHHHHHHHHc-C-----CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHH
Q 011395 303 MV-KFVIPSPGLHLAINACAAAAVATLF-G-----VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRA 375 (487)
Q Consensus 303 ~~-~~~l~l~G~~nv~NalaAia~a~~l-g-----~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~ 375 (487)
.. .+.++++|.||++|+++|++++..+ | ++++.|+++|++|+ +|||||++.. ++ .+|+| |+|||+|+++
T Consensus 248 ~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~~-~~-~viiD-~AhNp~s~~a 323 (428)
T 1jbw_A 248 RISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKISD-TP-LIVID-GAHNPDGING 323 (428)
T ss_dssp EEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEET-TT-TEEEE-CCCSHHHHHH
T ss_pred cccccccCCCChhHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEecC-CC-cEEEE-CCcCHHHHHH
Confidence 22 6889999999999999999999999 9 99999999999999 8999999986 44 45666 6899999999
Q ss_pred HHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE-EC-ccHHHHH-HHhhhhcCCeEEEECCHHH
Q 011395 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL-VG-DRFRAAA-ENMNLIKTDYIVVTNDAEI 452 (487)
Q Consensus 376 ~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~-~g-~~~~~i~-~~~~~~~~~~~~~~~d~~~ 452 (487)
+++++++..+ +|+++|||+| + ++.+.++++.+.+. +|.+|+ ++ +.++... +.+... ..+.+++|+++
T Consensus 324 ~l~~l~~~~~-~~~i~V~g~~---~---~kd~~~~~~~~~~~-~d~vi~~~~~~~~r~~~~~~l~~~--~~~~~~~~~~~ 393 (428)
T 1jbw_A 324 LITALKQLFS-QPITVIAGIL---A---DKDYAAMADRLTAA-FSTVYLVPVPGTPRALPEAGYEAL--HEGRLKDSWQE 393 (428)
T ss_dssp HHHHHHHHCS-SCCEEEEECS---S---STTHHHHHHHHHHH-CSEEEECCCSCC-----------------CBCSSHHH
T ss_pred HHHHHHHhcC-CCEEEEEeeC---C---CCCHHHHHHHHhhh-CCEEEEECCCCCCCCCCHHHHHhh--hCCeecCCHHH
Confidence 9999988763 7889999986 2 34466888888877 899999 55 4444331 122111 12446789999
Q ss_pred HHHHHHhhCCCCCEEEEecCCCCcHHHHHHHH
Q 011395 453 LSQKIVKRLKSNDVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 453 ai~~l~~~~~~~d~vLv~GSr~~~~e~~~~~l 484 (487)
|++.+.+.+ +||+||++||+.+- .++.+.|
T Consensus 394 ai~~a~~~~-~~d~vLv~GS~~~~-~~~~~~l 423 (428)
T 1jbw_A 394 ALAASLNDV-PDQPIVITGSLYLA-SAVRQTL 423 (428)
T ss_dssp HHHHHHHHC-TTSCEEEEESHHHH-HHHHHHH
T ss_pred HHHHHHhhC-CCCeEEEEeeHHHH-HHHHHHH
Confidence 999999888 99999999998763 3333433
No 12
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=5e-52 Score=435.97 Aligned_cols=343 Identities=18% Similarity=0.173 Sum_probs=267.4
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecCC--CCCCcc----------------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSYG--NWNNRV---------------- 172 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~g--~~n~~~---------------- 172 (487)
..+..++.++.++.+|..+.++|+||||||||||++||+++|++.|++|+ +++. ++|+++
T Consensus 45 ~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~~ 124 (487)
T 2vos_A 45 PSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATY 124 (487)
T ss_dssp TTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHHH
Confidence 45566677777777888889999999999999999999999999999984 3332 344432
Q ss_pred ---------------------hhhhHhhcC----------CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhh
Q 011395 173 ---------------------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSH 221 (487)
Q Consensus 173 ---------------------g~p~~l~~~----------~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dH 221 (487)
|.|+|++++ +.++|++|+|+|+++.. +.+++++|+++|||||+.||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~---d~tn~i~p~vaVITnI~~DH 201 (487)
T 2vos_A 125 REIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRW---DATNVINAPVAVITPISIDH 201 (487)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTT---STTCSSCCSEEEECCCCCCB
T ss_pred HHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcc---ccccccCCCEEEECCcchhh
Confidence 334555543 67899999999987653 35678899999999999999
Q ss_pred hhcCC-CHHHHHHHHHhhcccC---CCCCeEEEcCCcHHHHhhc----CCCCCcEEEEeCCCCceEEEEeceEEecCCeE
Q 011395 222 LESLG-SLEDVARAKGEIFQES---KLGDVCVLNADDPLVANLT----VPRGVRKVFFGWRRGCDVRLVAAQVANGGLGV 293 (487)
Q Consensus 222 l~~~g-s~e~~~~aK~~i~~~~---~~~~~~vln~Dd~~~~~~~----~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~ 293 (487)
+++|| |+|+|+++|++||+.+ ++++.+|+|.|||.+..++ ...++++++|+. ++.+.. +.....+.
T Consensus 202 ld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~----d~~~~~--~~~~~~g~ 275 (487)
T 2vos_A 202 VDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDS----EFAVLR--RQIAVGGQ 275 (487)
T ss_dssp CSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTT----TBEEEE--EEEETTEE
T ss_pred hhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecC----ceEEEe--eccccCCc
Confidence 99999 7999999999999875 7789999999999765543 112367888874 455555 55555566
Q ss_pred EEEEeecc-eEEEEEeCCCchhhHHHHHHHHHHHHHc-------CCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEec
Q 011395 294 QVVLEKER-EMVKFVIPSPGLHLAINACAAAAVATLF-------GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDA 365 (487)
Q Consensus 294 ~~~~~~~~-~~~~~~l~l~G~~nv~NalaAia~a~~l-------g~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Ds 365 (487)
.|.+...+ .+..+.++++|.||++|+++|++++..+ |++.+.|+++|++|+ .|||||++.. +..+|+|
T Consensus 276 ~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D- 351 (487)
T 2vos_A 276 VLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMRS--APTVFID- 351 (487)
T ss_dssp EEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEET--TTEEEEC-
T ss_pred eEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEcC--CCeEEEE-
Confidence 77776442 2226889999999999999999999998 899999999999999 5999999975 4688999
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc------HHHHHHHhhhh
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR------FRAAAENMNLI 439 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~------~~~i~~~~~~~ 439 (487)
|||||+|++++++++++..+.+|+++|||+|. ++ ..+.+.+.+... +|.+|+++.+ +..+.+.+...
T Consensus 352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~---dk---d~~~~~~~l~~~-~d~vilt~~~~~r~~~~~~l~~~~~~~ 424 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLG---DK---DVDGILAALEPV-FDSVVVTHNGSPRALDVEALALAAGER 424 (487)
T ss_dssp CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBT---TB---CHHHHHHHHTTT-CSEEEECCCSCTTBCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecC---CC---CHHHHHHHHHhh-CCEEEEeCCCCcCCCCHHHHHHHHHhh
Confidence 99999999999999987543568899999863 33 235677777665 7999999742 44566544331
Q ss_pred -cCCeEEEECCHHHHHHHHHhhCCCC-------------CEEEEecCCCC
Q 011395 440 -KTDYIVVTNDAEILSQKIVKRLKSN-------------DVVLVKGSRAM 475 (487)
Q Consensus 440 -~~~~~~~~~d~~~ai~~l~~~~~~~-------------d~vLv~GSr~~ 475 (487)
+...+.+++++++|++.+.+.++++ |+||++||+..
T Consensus 425 ~~~~~~~~~~~~~~Ai~~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~ 474 (487)
T 2vos_A 425 FGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVT 474 (487)
T ss_dssp HCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHH
T ss_pred cCCCceEecCCHHHHHHHHHHhcccCcccccccccccCCCEEEEEeeHHH
Confidence 1124677899999999998877655 99999999654
No 13
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.9e-52 Score=434.81 Aligned_cols=331 Identities=18% Similarity=0.177 Sum_probs=254.0
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecC--CCCCCcc---h------------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---G------------ 173 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~--g~~n~~~---g------------ 173 (487)
+++++|+.|+.+.+ +.++|+||||||||||++||+++|++.|++|+ +|+ +++|+++ |
T Consensus 37 ~~~~~l~~lg~p~~----~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~ 112 (442)
T 1o5z_A 37 RISMLLSKLGNPHL----EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIY 112 (442)
T ss_dssp HHHHHHHHTTCGGG----SSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcCCchh----cCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHH
Confidence 88898988876544 47999999999999999999999999999986 343 6777665 2
Q ss_pred ---------------hhhHhhcC----------CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-C
Q 011395 174 ---------------VALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-S 227 (487)
Q Consensus 174 ---------------~p~~l~~~----------~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g-s 227 (487)
.|+|++++ +.++|++|+|+|+++..+ .+++++|+++|||||+.||+++|| |
T Consensus 113 ~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d---~t~~~~P~vaViTnI~~DHld~~G~t 189 (442)
T 1o5z_A 113 ETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLD---ATNVVFPLCSTIVTVDRDHEKTLGYT 189 (442)
T ss_dssp HHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTC---GGGGCCCSCEEECCCCC-------CC
T ss_pred HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcc---ccccCCCCEEEECCccHhhhhhhCcC
Confidence 23444433 568999999999876543 466789999999999999999999 8
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC----CCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceE
Q 011395 228 LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV----PRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREM 303 (487)
Q Consensus 228 ~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~----~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~ 303 (487)
+|+|+++|++|++ +++.+|+|.||+....++. ..++++++|+. ++.+.. ......+..|.+...+..
T Consensus 190 ~e~ia~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~----d~~~~~--~~~~~~~~~~~~~~~~~~ 260 (442)
T 1o5z_A 190 IEQIAWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDK----DFSVKV--KSLKLHENRFDYCGENTF 260 (442)
T ss_dssp HHHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTT----TBEEEE--EECCTTCEEEEEESSSEE
T ss_pred HHHHHHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCc----ceeeec--cccccCCceEEEeccccc
Confidence 9999999999995 5889999999987765541 11367888885 455444 443444556666543222
Q ss_pred EEEEeCCCchhhHHHHHHHHHHHH--HcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHH
Q 011395 304 VKFVIPSPGLHLAINACAAAAVAT--LFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK 381 (487)
Q Consensus 304 ~~~~l~l~G~~nv~NalaAia~a~--~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~ 381 (487)
..+.++++|.||++|+++|++++. .+|++++.|+++|++|+ +|||||++.. ++..+|+| |||||+|+++++++++
T Consensus 261 ~~~~l~l~G~hn~~NalaAia~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~~-~~~~viiD-~AhNp~s~~~~l~~l~ 337 (442)
T 1o5z_A 261 EDLVLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK-NGKMYILD-GAHNPHGAESLVRSLK 337 (442)
T ss_dssp EEEEESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE-TTEEEEEC-CCCSHHHHHHHHHHHH
T ss_pred cccccCCCcHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEEc-CCCeEEEE-CCcCHHHHHHHHHHHH
Confidence 268899999999999999999999 99999999999999999 7999999986 44678889 9999999999999998
Q ss_pred ccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc------HHHHHHHhhhhcCCeEEEECCHHHHHH
Q 011395 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR------FRAAAENMNLIKTDYIVVTNDAEILSQ 455 (487)
Q Consensus 382 ~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~------~~~i~~~~~~~~~~~~~~~~d~~~ai~ 455 (487)
+..+.+|+++|||+| + ++.+.++++.+.+. +|.+++++.. +..+.+.+...+ ..+..++|+++|++
T Consensus 338 ~~~~~~~~i~V~g~~---~---dkd~~~~~~~l~~~-~d~vi~~~~~~~r~~~~~~i~~~~~~~~-~~~~~~~~~~~Ai~ 409 (442)
T 1o5z_A 338 LYFNGEPLSLVIGIL---D---DKNREDILRKYTGI-FERVIVTRVPSPRMKDMNSLVDMAKKFF-KNVEVIEDPLEAIE 409 (442)
T ss_dssp HHCTTCCEEEEECCC---T---TSCHHHHHGGGTTT-CSEEEECCCSSTTCCCHHHHHHHHHHHC-SCCEECSSHHHHHH
T ss_pred HhCCCCCEEEEEecC---C---CCCHHHHHHHHHhh-CCEEEEECCCCCCCCCHHHHHHHHHhcC-CCceecCCHHHHHH
Confidence 764346899999975 2 23456788888775 8999888742 356776665432 23557899999988
Q ss_pred HHHhhCCCCCEEEEecCCCCc
Q 011395 456 KIVKRLKSNDVVLVKGSRAMQ 476 (487)
Q Consensus 456 ~l~~~~~~~d~vLv~GSr~~~ 476 (487)
.+ ||+||++||+.+.
T Consensus 410 ~a------~d~VLv~GS~~~~ 424 (442)
T 1o5z_A 410 ST------ERATVVTGSLFLV 424 (442)
T ss_dssp TC------CSEEEEESCHHHH
T ss_pred hC------CCEEEEEeeHHHH
Confidence 75 8999999997653
No 14
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.2e-50 Score=424.31 Aligned_cols=320 Identities=22% Similarity=0.256 Sum_probs=250.3
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceE-ecCCCCCCcch-hhhHhhcCCCCCcEEEEeccCCCcchHHhhccccCC
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVF-QSYGNWNNRVG-VALSLIGIDRAVDIAVLEMGMSGKGEILELARMARP 209 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~-~t~g~~n~~~g-~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~~p 209 (487)
.++|+||||||||||++||+++|++.|++++ .+.|++++ ++ .+.. + .+.+ +|+|++++.. ....++|
T Consensus 114 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~-~g~~~~~---~-~~~~-~V~E~~~~~~-----~~~~~~p 182 (469)
T 1j6u_A 114 KEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDS-LEHGNYE---K-GNGP-VVYELDESEE-----FFSEFSP 182 (469)
T ss_dssp CCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTT-STTSSEE---C-CSSC-EEEEECTTSG-----GGGGCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecc-cCccccc---c-CCCC-EEEECCCccC-----ccccccC
Confidence 6899999999999999999999999999874 45566554 45 3332 2 3467 9999987532 2335799
Q ss_pred cEEEEcCCChhhhhcCCC-HHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcCCCCCcEEEEeCCCCceEEEEeceEEe
Q 011395 210 EIRVVLNVGDSHLESLGS-LEDVARAKGEIFQESKLGDVCVLNADDPLVANLTVPRGVRKVFFGWRRGCDVRLVAAQVAN 288 (487)
Q Consensus 210 dvaViTNI~~dHl~~~gs-~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~ 288 (487)
+++|||||++||+++||+ +|+|+++|.+++..++ .+|+|.|||.+..+ ++++||.+. +++.+ + +..
T Consensus 183 ~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~---~~V~n~dd~~~~~~------~~~~~g~~~-~d~~~-~--~~~ 249 (469)
T 1j6u_A 183 NYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD---LVVTFAEDELTSHL------GDVTFGVKK-GTYTL-E--MRS 249 (469)
T ss_dssp SEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS---EEEEETTCTTTGGG------CSEEECSSS-SSEEE-E--EEE
T ss_pred CEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC---EEEEECCChhhccc------eEEEEECCC-ceEEE-E--EEE
Confidence 999999999999999999 9999999999997654 89999999875432 578998765 67777 6 665
Q ss_pred cCCe-EEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEE--eecCCeEEEEe
Q 011395 289 GGLG-VQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELL--VSRSGIKIVND 364 (487)
Q Consensus 289 ~~~~-~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~--~~~~~~~ii~D 364 (487)
..++ ..|.+...+. ...+.++++|.||++|+++|++++..+|++++.|+++|++|+++|||||++ ...+++++|+|
T Consensus 250 ~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~~~~g~~vi~D 329 (469)
T 1j6u_A 250 ASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 329 (469)
T ss_dssp ECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCCCCcEEEcccccCCcEEEEe
Confidence 5555 6777654322 226889999999999999999999999999999999999999999999999 44478999999
Q ss_pred cCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCc--ccHHHHHHHHHHHHHcCCCEEEEEC-----------ccHHH
Q 011395 365 AYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGS--TERESHEKILSYCCDACIDLIGLVG-----------DRFRA 431 (487)
Q Consensus 365 sya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~--~~~~~~~~~~~~l~~~~~d~vi~~g-----------~~~~~ 431 (487)
|||||++++++++++++..+.+|+++|+|. |. +.+..+.++++.+. . +|.+|+++ ..++.
T Consensus 330 -~aHnp~~~~a~l~al~~~~~~~~i~~I~g~----g~~~r~~~~~~~l~~~~~-~-~d~vil~~~~~~~e~p~~g~~~~~ 402 (469)
T 1j6u_A 330 -YAHTPDEIRNLLQTAKEVFENEKIVVIFQP----HRYSRLEREDGNFAKALQ-L-ADEVVVTEVYDAFEEKKNGISGKM 402 (469)
T ss_dssp -CCCSHHHHHHHHHHHHHHCSSSEEEEEECC----BC--------CHHHHHHT-T-SSEEEECCCBC---------CHHH
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCcEEEEEcC----CCCCccHHHHHHHHHHHh-c-CCEEEEcccCCCCCCcccCcCHHH
Confidence 999999999999999863324677888863 32 23334567777664 3 89999974 34566
Q ss_pred HHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCCcH--HHHHHHHH
Q 011395 432 AAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAMQM--EKVVDVIK 485 (487)
Q Consensus 432 i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~~~--e~~~~~l~ 485 (487)
+.+.+...+ ..+.+++|++++++.+ .+++||+||++|++++.+ +.+++.|+
T Consensus 403 l~~~~~~~~-~~~~~~~~~~~a~~~~--~a~~gD~VLv~g~Gs~~~~~~~l~~~l~ 455 (469)
T 1j6u_A 403 IWDSLKSLG-KEAYFVEKLPELEKVI--SVSENTVFLFVGAGDIIYSSRRFVERYQ 455 (469)
T ss_dssp HHHHHHHTT-CCEEECCSGGGHHHHC--CCCSSEEEEEECSSTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CcEEEECCHHHHHHHh--hCCCCCEEEEECCCchhHHHHHHHHHHh
Confidence 777665432 2466788999999876 788999999999999888 88887774
No 15
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=9.5e-52 Score=428.92 Aligned_cols=336 Identities=19% Similarity=0.197 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecC--CCCCCcc-----------------
Q 011395 114 TLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV----------------- 172 (487)
Q Consensus 114 ~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~--g~~n~~~----------------- 172 (487)
.++.++++.+.+.+|+.+.++|+||||||||||+.||+++|++.|++|+ +|+ .+||+++
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 3556667777777788889999999999999999999999999999994 454 5788877
Q ss_pred -------hhhhHhhcC----------CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-CHHHHHHH
Q 011395 173 -------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVARA 234 (487)
Q Consensus 173 -------g~p~~l~~~----------~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g-s~e~~~~a 234 (487)
+.|+|.+++ +.++|++|+|+|+++.. +.+++++|+++|||||+.||+++|| |+|+|+++
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrl---d~tnii~p~vaVITnI~~DHld~lG~t~e~ia~~ 190 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRL---DATNIVDSDVAAITSIALDHTDWLGYDRESIGRE 190 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTT---SGGGGSCCSEEEECCCCCCBCCCTTCSHHHHHHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcc---ccccccCCCEEEEcCccHHHHHHhCCcHHHHHHH
Confidence 455666554 77999999999987653 3477889999999999999999999 79999999
Q ss_pred HHhhcccCCCCCeEEEcCCcHH--HHhhcCCCCCcEEEEeCCCCceEEEEec---eEEecCCeEEEEEeecceEEEEEeC
Q 011395 235 KGEIFQESKLGDVCVLNADDPL--VANLTVPRGVRKVFFGWRRGCDVRLVAA---QVANGGLGVQVVLEKEREMVKFVIP 309 (487)
Q Consensus 235 K~~i~~~~~~~~~~vln~Dd~~--~~~~~~~~~~~vi~~g~~~~~d~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~l~ 309 (487)
|++|++ +++.+|+|.||+. +...+.+.++++++||.+ .++...+. .+.....+..|.+.+.... .+.++
T Consensus 191 Ka~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 264 (437)
T 3nrs_A 191 KAGVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVA--WKFSQQEPFDQQEPVDQQINGWHWQCGERQ-LTGLP 264 (437)
T ss_dssp HGGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTT--EEEEC--------------CCEEEEETTEE-EEEEC
T ss_pred HHhhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEeccc--ceeeecccccccccccccCceEEEecCCcc-eeccC
Confidence 999995 5889999988863 233331223788888864 23332200 0011112233444443211 45566
Q ss_pred CC--chhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHH------
Q 011395 310 SP--GLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLK------ 381 (487)
Q Consensus 310 l~--G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~------ 381 (487)
++ |.||+.|+++|+++ ..+|++.+.|+++|++|+ .|||||++.. +..+|+| |||||+|+++++++++
T Consensus 265 l~~~~~~Na~~Alaa~~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~~--~~~vi~D-~AHNp~a~~all~~l~~~~~~~ 339 (437)
T 3nrs_A 265 VPNVPLANAATALAVLHY-SELPLSDEAIRQGLQAAS-LPGRFQVVSE--QPLLILD-VAHNPHAARYLVNRLAQVINPV 339 (437)
T ss_dssp CCSSCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHCC-CTTSSEEEET--TTEEEEC-CCCSHHHHHHHHHHHHHTC---
T ss_pred CcchhHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhCC-CCCceEEEec--CCeEEEE-CCCCHHHHHHHHHHHHhhcchh
Confidence 66 89999999988888 678999999999999999 6999999984 4579999 9999999999999998
Q ss_pred ccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc------HHHHHHHhhhhcCCeEEEECCHHHHHH
Q 011395 382 DIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR------FRAAAENMNLIKTDYIVVTNDAEILSQ 455 (487)
Q Consensus 382 ~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~------~~~i~~~~~~~~~~~~~~~~d~~~ai~ 455 (487)
++.+.+|+++|||+| ++ +.++++++.+... +|.+++++.+ +..+.+.+.. . .+++|+++|++
T Consensus 340 ~~~~~~r~i~V~G~~---~d---kd~~~~~~~l~~~-~~~v~~~~~~~~r~~~~~~l~~~~~~----~-~~~~d~~~Ai~ 407 (437)
T 3nrs_A 340 NASKQGKVRAVVGML---SD---KDIAGTLACLSER-VDEWYCAPLEGPRGASAGQLAEHLVS----A-RQFSDVETAWR 407 (437)
T ss_dssp -----CCEEEEECCB---TT---BCHHHHHHHHTTT-CCEEEECCCSSTTBCCHHHHHTTCSS----C-EECSSHHHHHH
T ss_pred hhcCCCCEEEEEeCC---CC---CCHHHHHHHHHhc-CCEEEEeCCCCCCCCCHHHHHHHHhh----C-CCcCCHHHHHH
Confidence 764357899999974 33 3467888888775 8999998754 3456655532 2 57899999999
Q ss_pred HHHhhCCCCCEEEEecCCCC
Q 011395 456 KIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 456 ~l~~~~~~~d~vLv~GSr~~ 475 (487)
.+.+.+++||+||++||+.+
T Consensus 408 ~a~~~a~~~D~VLv~GS~~~ 427 (437)
T 3nrs_A 408 QAMQDADTQDVVIVCGSFHT 427 (437)
T ss_dssp HHHHHCCTTCEEEEESSHHH
T ss_pred HHHHhcCCCCeEEEEehHHH
Confidence 99999999999999999754
No 16
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=6.7e-51 Score=421.58 Aligned_cols=332 Identities=19% Similarity=0.217 Sum_probs=254.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE--ecC--CCCCCcc----------------
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF--QSY--GNWNNRV---------------- 172 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~--~t~--g~~n~~~---------------- 172 (487)
+++++|+.|+ .|..+.++|+||||||||||++||+++|++.|++|+ .++ +++|+++
T Consensus 34 r~~~~l~~lg----~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~ 109 (422)
T 1w78_A 34 RVSLVAARLG----VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASF 109 (422)
T ss_dssp HHHHHHHHHT----CSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHH
T ss_pred HHHHHHHHcC----CcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHH
Confidence 5666666555 467778999999999999999999999999999985 343 5677654
Q ss_pred --------hhhhHhhcC----------CCCCcEEEEeccCCCcchHHhhccccCCcEEEEcCCChhhhhcCC-CHHHHHH
Q 011395 173 --------GVALSLIGI----------DRAVDIAVLEMGMSGKGEILELARMARPEIRVVLNVGDSHLESLG-SLEDVAR 233 (487)
Q Consensus 173 --------g~p~~l~~~----------~~~~~~~V~E~g~~~~g~i~~~~~~~~pdvaViTNI~~dHl~~~g-s~e~~~~ 233 (487)
+.|++++++ +.++|++|+|+|+++..+ .+++++|+++|||||+.||+++|| |+|+|++
T Consensus 110 ~~v~~~~~~~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~~d---~t~~~~p~vaviTnI~~DHld~~g~t~e~ia~ 186 (422)
T 1w78_A 110 AEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLD---ATNIVDADVAVVTSIALDHTDWLGPDRESIGR 186 (422)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTS---GGGGSCCSEEEECCCCSCCHHHHCSSHHHHHH
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcccc---cccCCCCCEEEECCcChhhhhhhCCCHHHHHH
Confidence 345555443 568999999999876643 557789999999999999999999 7999999
Q ss_pred HHHhhcccCCCCCeEEEcCCcHHH--HhhcCCCCCcEEEEeCCCCceEEEEeceEEecCCeEEEEEeecceEEEEEeCCC
Q 011395 234 AKGEIFQESKLGDVCVLNADDPLV--ANLTVPRGVRKVFFGWRRGCDVRLVAAQVANGGLGVQVVLEKEREMVKFVIPSP 311 (487)
Q Consensus 234 aK~~i~~~~~~~~~~vln~Dd~~~--~~~~~~~~~~vi~~g~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~l~ 311 (487)
+|++|++ +++.+|+|.||+.. .......++++++||. ++... .... .|.+...+.. .+.++++
T Consensus 187 ~K~~i~~---~~~~~v~~~d~~~~~~~~~a~~~~~~~~~~g~----~~~~~-----~~~~--~~~~~~~~~~-~~~l~l~ 251 (422)
T 1w78_A 187 EKAGIFR---SEKPAIVGEPEMPSTIADVAQEKGALLQRRGV----EWNYS-----VTDH--DWAFSDAHGT-LENLPLP 251 (422)
T ss_dssp HHGGGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTT----TBEEE-----ECSS--CEEEEETTEE-EEEECCC
T ss_pred HHHhhcc---CCCcEEEcCccHHHHHHHHHHHcCCceEEeCc----ceeee-----ccCc--eEEEecCCcc-cccCCch
Confidence 9999995 47889999887642 2222111267888885 23221 1112 2333332221 1678888
Q ss_pred chhhHHHHHHHHHHHHHc--CCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcE
Q 011395 312 GLHLAINACAAAAVATLF--GVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKR 389 (487)
Q Consensus 312 G~~nv~NalaAia~a~~l--g~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~ 389 (487)
.||++|+++|++++..+ |++++.|+++|++|+ +|||||++.. + ..+|+| |||||+|++++++++++..+.+|+
T Consensus 252 -~hn~~Na~aAia~~~~~~~gi~~~~i~~~L~~~~-~~gR~e~~~~-~-~~~i~D-~Ahnp~s~~~~l~~l~~~~~~~~~ 326 (422)
T 1w78_A 252 -LVPQPNAATALAALRASGLEVSENAIRDGIASAI-LPGRFQIVSE-S-PRVIFD-VAHNPHAAEYLTGRMKALPKNGRV 326 (422)
T ss_dssp -SSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCC-CTTSSEEEET-T-TEEEEE-CCCSHHHHHHHHHHHHHSCSCSCE
T ss_pred -HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC-CCceEEEEeC-C-CeEEEE-CCCCHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999999986 899999999999999 5999999985 3 468889 899999999999999877534689
Q ss_pred EEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc------HHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCC
Q 011395 390 VVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR------FRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKS 463 (487)
Q Consensus 390 i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~------~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~ 463 (487)
++|||+|. + +.++++++.+... +|.++++|.. +..+.+.+. .+.+++|+++|++.+.+.+++
T Consensus 327 i~V~g~~~---~---kd~~~~~~~l~~~-~d~vi~~~~~~~r~~~~~~l~~~~~-----~~~~~~~~~~ai~~a~~~~~~ 394 (422)
T 1w78_A 327 LAVIGMLH---D---KDIAGTLAWLKSV-VDDWYCAPLEGPRGATAEQLLEHLG-----NGKSFDSVAQAWDAAMADAKA 394 (422)
T ss_dssp EEEECCBT---T---SCHHHHHHHHHTT-CSEEEECCCCSSSBCCHHHHHHHHS-----SCEECSSHHHHHHHHHHHCCT
T ss_pred EEEEeccC---C---CCHHHHHHHHHhh-CCEEEEECCCCCCCCCHHHHHHHHh-----hcccCCCHHHHHHHHHHhcCC
Confidence 99999753 2 3456888888775 8999998743 455666553 145689999999999999999
Q ss_pred CCEEEEecCCCCcHHHHHHHH
Q 011395 464 NDVVLVKGSRAMQMEKVVDVI 484 (487)
Q Consensus 464 ~d~vLv~GSr~~~~e~~~~~l 484 (487)
||+||++||+.+ +.++.+.|
T Consensus 395 ~d~vLv~GS~~~-~~~~~~~l 414 (422)
T 1w78_A 395 EDTVLVCGSFHT-VAHVMEVI 414 (422)
T ss_dssp TCEEEEESSHHH-HHHHHHHH
T ss_pred CCEEEEEeeHHH-HHHHHHHH
Confidence 999999999776 44555544
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=1.6e-39 Score=324.76 Aligned_cols=208 Identities=19% Similarity=0.130 Sum_probs=171.3
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhCCCceEe----cCCCCCCc--chhhhHhhcCCCCCcEEEEeccCCCcchHHhhcc
Q 011395 132 GVLVGVTGSVGKSTTKSMIALALESLGVNVFQ----SYGNWNNR--VGVALSLIGIDRAVDIAVLEMGMSGKGEILELAR 205 (487)
Q Consensus 132 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~----t~g~~n~~--~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~ 205 (487)
.++||||||||||||++||+++|++.|+++.. +.+|+++. ++.|.++ ..+++.+++|+|+|+++.+.+.+...
T Consensus 108 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~~~~p~~~-~~~~~~~~~V~E~ss~~~~~~~~~~~ 186 (326)
T 3eag_A 108 HWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQ-DPNSQSPFFVIEADEYDTAFFDKRSK 186 (326)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEECCCCCSS-CTTSCCCEEEEECCCSEEETTEEEEG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCcceecCCcccc-ccCCCCCEEEEEccccccchhhcccc
Confidence 68999999999999999999999999988642 33677654 5666665 55678999999999876654443332
Q ss_pred --ccCCcEEEEcCCChhhhhcCCCHHHHHHHHHhhcccCCCCCeEEEcCCcHHHHhhcC-CCCCcEEEEeCCCCceEEEE
Q 011395 206 --MARPEIRVVLNVGDSHLESLGSLEDVARAKGEIFQESKLGDVCVLNADDPLVANLTV-PRGVRKVFFGWRRGCDVRLV 282 (487)
Q Consensus 206 --~~~pdvaViTNI~~dHl~~~gs~e~~~~aK~~i~~~~~~~~~~vln~Dd~~~~~~~~-~~~~~vi~~g~~~~~d~~~~ 282 (487)
.++|+++|||||++||+|+|||+|+|+++|.+||+.+++++.+|+|.|||....+.. ....++++||. .+|+++.
T Consensus 187 ~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~--~~d~~~~ 264 (326)
T 3eag_A 187 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT--EHGWQAG 264 (326)
T ss_dssp GGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESS--SSSEEEE
T ss_pred eeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECC--CCcEEEE
Confidence 259999999999999999999999999999999999989999999999999888762 12367899985 4688877
Q ss_pred eceEEecCCeEEEEEeecce-EEEEEeCCCchhhHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCC
Q 011395 283 AAQVANGGLGVQVVLEKERE-MVKFVIPSPGLHLAINACAAAAVATLFGVSLAQVGISLSNFSPVQ 347 (487)
Q Consensus 283 ~~~i~~~~~~~~~~~~~~~~-~~~~~l~l~G~~nv~NalaAia~a~~lg~~~~~i~~~L~~~~~~~ 347 (487)
+ +.. ++. |.+...+. ...++++++|+||++|+++|++++..+|++++.|+++|++|++++
T Consensus 265 ~--~~~--~g~-f~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 265 E--ANA--DGS-FDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp E--ECT--TSC-EEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred E--ecC--CcE-EEEEECCceEEEEEecCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 6 642 345 77654433 237889999999999999999999999999999999999999865
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.85 E-value=5.4e-21 Score=171.10 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc---HHHHHH
Q 011395 333 LAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE---RESHEK 409 (487)
Q Consensus 333 ~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~---~~~~~~ 409 (487)
.++|+++|++|++++||||++...++++||+| |||||+||+++++++++..+.+|+++||| +|.++ ...+.+
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~----~g~~s~r~k~~~~~ 85 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLE----PRSNTMKMGVHKHE 85 (163)
T ss_dssp ----------------CCEEEEEETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEEC----CC---------CHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEecCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEEC----CCCcchhhHHHHHH
Confidence 46799999999999999999987689999999 99999999999999997543578888886 46543 344577
Q ss_pred HHHHHHHcCCCEEEEECccHHH--HHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 410 ILSYCCDACIDLIGLVGDRFRA--AAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 410 ~~~~l~~~~~d~vi~~g~~~~~--i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
+++.+. . +|.+|++|+.... +.+.+... ..++.+++|+++|++.+.+.+++||+||++||+++
T Consensus 86 ~~~~~~-~-aD~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~eai~~~~~~~~~gDvVLv~Gsg~~ 150 (163)
T 3mvn_A 86 LATSLQ-D-ADSVFIYQPPTIEWQVSEVLANL-AQPAISADDVDELVMRIVQQAKPNDHILIMSNGAF 150 (163)
T ss_dssp HHHHHT-T-CSEEEEECC----CCHHHHHTTC-CSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSCG
T ss_pred HHHHHh-c-CCEEEEECCCCcccCHHHHHhhC-CCCeEEECCHHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 887664 3 8999999864211 22222222 23577899999999999999999999999999984
No 19
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=90.53 E-value=0.85 Score=44.75 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=66.4
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhCCCceEec-CCC----CCCcchhhhHhh--------------cC-CCCCcE
Q 011395 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQS-YGN----WNNRVGVALSLI--------------GI-DRAVDI 187 (487)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~~t-~g~----~n~~~g~p~~l~--------------~~-~~~~~~ 187 (487)
+.+.|.||||. |||+|+..|.+.|++.|+++... .|. .+...|+|+.-. .. .++.|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 46789999984 99999999999999999998531 110 112233332111 11 467899
Q ss_pred EEEeccC--CCcch---HHhhccccCCcEEEEcC-CChhhhhcC------CCHHHHHHHHHhhc
Q 011395 188 AVLEMGM--SGKGE---ILELARMARPEIRVVLN-VGDSHLESL------GSLEDVARAKGEIF 239 (487)
Q Consensus 188 ~V~E~g~--~~~g~---i~~~~~~~~pdvaViTN-I~~dHl~~~------gs~e~~~~aK~~i~ 239 (487)
.|+|-.- .++.. -..+....+|+..|+.- -++.|+..| +++++..+.-..+-
T Consensus 248 ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l~ 311 (350)
T 2g0t_A 248 VFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLS 311 (350)
T ss_dssp EEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHSS
T ss_pred EEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHhc
Confidence 9999741 12211 11122335999999966 566666544 56666555544443
No 20
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=89.81 E-value=0.63 Score=46.20 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=60.2
Q ss_pred cCHHHHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccCC-CCccE
Q 011395 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCNN-WDKGF 103 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~~-~~~~~ 103 (487)
|+|+||++.+++.+.++.+ ++++.. -+...+ ++|-|. +...|.+.+.+ ..|.++++.+.... ...+.
T Consensus 26 ~~~~~ia~~~~~~~~g~~~~~i~~~~~-~~~a~~--~~l~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 95 (372)
T 3pmo_A 26 YTLGQLAAHVGAEVRGDADLPIQGLAT-LQEAGP--AQLSFL------ANPQYRKYLPE-SRAGAVLLTAADADGFAGTA 95 (372)
T ss_dssp EEHHHHHHHHTCEEESCTTCEEEEEEC-GGGCCT--TSEEEC------CCGGGGGGGGG-CCCSEEEECHHHHTTCSSCE
T ss_pred ccHHHHHHHhCCEEECCCCceEeeecC-hhhCCC--CeEEEE------CCHHHHHHHhc-CCCcEEEEcHHHHhhccccE
Confidence 7999999999999877544 666543 345667 898665 33467766555 67778888764321 13468
Q ss_pred EEEcCCCCccHHHHHHHHHHHHhh
Q 011395 104 VQVEGNGNVNTLNSLVNMACYARN 127 (487)
Q Consensus 104 i~V~~~~~~d~~~aL~~la~~~~~ 127 (487)
+.++ |+..++..+.+++..
T Consensus 96 l~~~-----~p~~~~~~~~~~~~~ 114 (372)
T 3pmo_A 96 LVVA-----NPYLAYASLSHLFDR 114 (372)
T ss_dssp EECS-----CHHHHHHHHHGGGCC
T ss_pred EEEC-----CHHHHHHHHHHHhcc
Confidence 8899 999999888875543
No 21
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=89.77 E-value=0.74 Score=45.09 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=60.4
Q ss_pred cCHHHHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC-CCCccE
Q 011395 27 WTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN-NWDKGF 103 (487)
Q Consensus 27 ~~l~~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~-~~~~~~ 103 (487)
|+++||++.+++.+.++.+ ++++. .-+...+ ++|-|. +...|.+.+.. ..|.++++.++.. ....+.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~~~i~~~~-~~~~a~~--~~i~fl------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~~~ 73 (341)
T 3eh0_A 4 IRLADLAQQLDAELHGDGDIVITGVA-SMQSAQT--GHITFM------VNPKYREHLGL-CQASAVVMTQDDLPFAKSAA 73 (341)
T ss_dssp EEHHHHHHHTTCEEESCSCCEECEEC-CTTTCCT--TEEEEC------CCSSGGGGGGG-CCCSEEEECTTTGGGCCSCE
T ss_pred ccHHHHHHHhCCEEeCCCCceEeeee-ccccCCC--CeEEEe------CCHHHHHHHhh-CCCCEEEECHHHhhhhccce
Confidence 7999999999999877544 66643 3345677 898766 33456665555 6677888877532 113456
Q ss_pred EEEcCCCCccHHHHHHHHHHHHhh
Q 011395 104 VQVEGNGNVNTLNSLVNMACYARN 127 (487)
Q Consensus 104 i~V~~~~~~d~~~aL~~la~~~~~ 127 (487)
+.++ |+..++..+.+++..
T Consensus 74 ~~~~-----~p~~~~~~~~~~~~~ 92 (341)
T 3eh0_A 74 LVVK-----NPYLTYARMAQILDT 92 (341)
T ss_dssp EECS-----CHHHHHHHHHHHHCC
T ss_pred EEeC-----CHHHHHHHHHHHhcc
Confidence 8899 999999999886544
No 22
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=89.25 E-value=0.45 Score=46.96 Aligned_cols=88 Identities=13% Similarity=0.153 Sum_probs=63.8
Q ss_pred CccCHHHHHHHhCCeeccCCC--CCeEEeeCCccccCCCCEEEEecCCcCCcccchHHhhhcCCceEEEeccccC--CC-
Q 011395 25 PIWTINEIAESVNGKILKWGP--PGIICTDTRILAPNKNQWFFAITGQHFDAHEFISPELYGKGCVGVIGNQVCN--NW- 99 (487)
Q Consensus 25 ~~~~l~~l~~~~~~~~~~~~~--~~~i~~dsr~v~~~~g~lFva~~G~~~dgh~~~~~A~~~~Ga~~~v~~~~~~--~~- 99 (487)
+.|+|+||++.+++.+.++.+ |++++.= ....+ ++|=|. +...|.+.+.+ ..|.++|+.+... .+
T Consensus 6 ~~~~~~~ia~~~~~~~~g~~~~~i~~~~~~-~~a~~--~~~~f~------~~~~~~~~~~~-~~a~~~i~~~~~~~~~~~ 75 (357)
T 4e79_A 6 QQYRLDELAHLVKGELIGEGSLQFSNLASL-ENAEV--NHLTFV------NGEKHLDQAKV-SRAGAYIVTAALKEHLPE 75 (357)
T ss_dssp CCEEHHHHHHHTTCEEESCTTCEECEECCT-TTCCT--TEEEEC------CSGGGHHHHHT-CCCSEEEECHHHHHTCTT
T ss_pred CcccHHHHHHHhCCEEECCCCceEEeecCh-hcCCC--CcEEEe------CChhHHHHHhc-CCCEEEEEcHHHhhhccC
Confidence 447999999999999887544 6666544 34567 888665 33578877776 7888888886531 12
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHHhh
Q 011395 100 DKGFVQVEGNGNVNTLNSLVNMACYARN 127 (487)
Q Consensus 100 ~~~~i~V~~~~~~d~~~aL~~la~~~~~ 127 (487)
+.+++.++ |+..++.++.+++..
T Consensus 76 ~~~~i~~~-----~p~~~~~~~~~~~~~ 98 (357)
T 4e79_A 76 KDNFIIVD-----NPYLAFAILTHVFDK 98 (357)
T ss_dssp CCEEEECS-----CHHHHHHHHHTTSSC
T ss_pred CccEEEEC-----CHHHHHHHHHHHhcc
Confidence 35789899 999999988875443
No 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.51 E-value=0.48 Score=41.47 Aligned_cols=32 Identities=25% Similarity=0.063 Sum_probs=27.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+++|+|+|.. ||||+...|...|+..|++|.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~ 36 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG 36 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeee
Confidence 37899999985 999999999999988888875
No 24
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.41 E-value=0.84 Score=40.74 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhh-cCCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 115 LNSLVNMACYARN-SRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 115 ~~aL~~la~~~~~-p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.+..++..... +..+..+|+|+|.+ ||||++.+|...|...+.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 4456666663332 23346789999987 899999999999976666553
No 25
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=88.11 E-value=2.6 Score=34.64 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCCceeEEeecCCeEEEEecCC--CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEE
Q 011395 346 VQMRSELLVSRSGIKIVNDAYN--ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIG 423 (487)
Q Consensus 346 ~~gR~e~~~~~~~~~ii~Dsya--~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi 423 (487)
..+...+.-..+|+..+.=--. =+++-.+++...+.++. .++...||.+|...+.-+.+.++-+.+.. .++.+-
T Consensus 8 ~~~~~~~~~~~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~-~~~~~~vL~D~r~~~~~s~~AR~~~~~~~---~~~a~A 83 (124)
T 3bl4_A 8 VGTEAGLTLGGDGILRLTWPRGAAITAADAERAMLRVNQLC-GDDRHPMLVDMATTADVSRGARAVFGRPC---QASRIA 83 (124)
T ss_dssp CCCCTTEEECTTSCEEEECSSSSCCCHHHHHHHHHHHHHHH-TTCCEEEEEECCSSTHHHHHHHHHHCCCC---CEEEEE
T ss_pred CCCeeeEEEcCCCEEEEEEcCCCccCHHHHHHHHHHHHHHh-CCCceEEEEEcccccCCCHHHHHHHhCcc---ceeEEE
Confidence 3444444444467654422011 27899999988888776 45679999998877666777776666533 378888
Q ss_pred EECccH--HHHHHHhhhh--cCCeEEEECCHHHHHHHHHh
Q 011395 424 LVGDRF--RAAAENMNLI--KTDYIVVTNDAEILSQKIVK 459 (487)
Q Consensus 424 ~~g~~~--~~i~~~~~~~--~~~~~~~~~d~~~ai~~l~~ 459 (487)
++|..+ +.+..-+... ......+|.+.+||..++.+
T Consensus 84 l~g~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 84 LLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EECSSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEcCCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 888775 3333333221 13456899999999999853
No 26
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=87.71 E-value=0.48 Score=45.91 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=28.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++|+|+| =.|||||+.-|+..|.+.|++|.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 468999995 56899999999999999999985
No 27
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=86.69 E-value=0.63 Score=42.79 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+++.|-|||| .|||+++..|...|++.|++|..
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~ 38 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC 38 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE
Confidence 4678999998 59999999999999999999853
No 28
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.49 E-value=0.62 Score=41.36 Aligned_cols=32 Identities=31% Similarity=0.331 Sum_probs=26.8
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+++|+|+ |-.||||++..|+..|.+.|++|..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vll 35 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAV 35 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 4688888 5577999999999999888888753
No 29
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.37 E-value=1.4 Score=41.52 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=36.0
Q ss_pred HHHHHHHHHHH--HhhcCCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 114 TLNSLVNMACY--ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 114 ~~~aL~~la~~--~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+++..|... +..+....++|.||++ .||||++.-|+..|.+.|.+|..
T Consensus 62 ~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLL 116 (271)
T 3bfv_A 62 ISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLI 116 (271)
T ss_dssp HHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 34566655542 2222456789999966 68999999999999888888753
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.03 E-value=0.55 Score=42.45 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=26.6
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|.||++ .|||||+.-|+..|.+.|++|..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 46788776 68999999999999889999864
No 31
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.87 E-value=1.7 Score=41.59 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=35.9
Q ss_pred HHHHHHHHHHH--HhhcCCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 114 TLNSLVNMACY--ARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 114 ~~~aL~~la~~--~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+++..|... +..+....++|.||++ .||||++.-|+..|.+.|.+|..
T Consensus 84 ~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 84 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp HHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 34566665431 2222445789999976 68999999999999888888753
No 32
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=84.43 E-value=1.7 Score=41.31 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHHHH--HHhhcCCCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 115 LNSLVNMAC--YARNSRFSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 115 ~~aL~~la~--~~~~p~~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+++..|.. .+..+..+.++|+||++ .||||++.-|+..|.+.|.+|.
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVL 125 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVL 125 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEE
Confidence 445555543 12222445789999876 5899999999999977777774
No 33
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=82.27 E-value=1.2 Score=41.56 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+++.|-||||. |||+++..|...|++.|++|.
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~ 59 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVA 59 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 347889999986 999999999999999999985
No 34
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.61 E-value=3.1 Score=37.12 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeCCC--ChHhHHHHHHHHHHhCC
Q 011395 116 NSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLG 158 (487)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g 158 (487)
..+..++.....-..+..+|+|.|-| ||||+..+|..+|...|
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45666766433302456799999987 89999999999996443
No 35
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=81.12 E-value=1.3 Score=40.46 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhC-CCceE
Q 011395 131 SGVLVGVT---GSVGKSTTKSMIALALESL-GVNVF 162 (487)
Q Consensus 131 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~-g~~v~ 162 (487)
..++|+|+ |-.||||++..|+..|.+. |++|.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vl 38 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVL 38 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEE
Confidence 36788888 5578999999999999666 88875
No 36
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=80.93 E-value=1.5 Score=40.71 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=28.7
Q ss_pred CcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.+.|-|||| .|||+++..|...|++.|++|..
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~ 55 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTIL 55 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEE
Confidence 578999999 69999999999999999999853
No 37
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=80.89 E-value=2.2 Score=40.37 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEE---eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGV---TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~V---TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+..+..+-+..+. ..+..+|.. -|-.||||++..|+..|...|++|.
T Consensus 18 ~~~~~~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVl 69 (298)
T 2oze_A 18 EELKILEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVL 69 (298)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEE
Confidence 445555555553333 222333333 4578999999999999988888885
No 38
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=80.77 E-value=1.5 Score=39.86 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.9
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|+|+++ .||||++..|+..|.+.|++|..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLA 36 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 57888765 58999999999999888888853
No 39
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.25 E-value=2.8 Score=42.44 Aligned_cols=31 Identities=26% Similarity=0.267 Sum_probs=26.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.++|.++|.+ |||||+.-|+..|...|++|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4678888765 799999999999988898884
No 40
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=80.11 E-value=1.3 Score=41.00 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhCCCceEe
Q 011395 131 SGVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+.++|+|++.. ||||++..|+..|.+.|++|..
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll 40 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLL 40 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEE
Confidence 46899998655 7999999999999888888853
No 41
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.11 E-value=2.6 Score=42.59 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|.++|.+ |||||+..|+..|+..|++|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl 129 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG 129 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 5688888875 599999999999999999884
No 42
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=79.00 E-value=1.2 Score=42.69 Aligned_cols=31 Identities=23% Similarity=0.155 Sum_probs=24.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh-CCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALES-LGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~-~g~~v~ 162 (487)
..+|+++|.+ |||||...|+..+.. .|++|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 4567666654 899999999999974 787775
No 43
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=78.99 E-value=1.9 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+|+|+|.+ |||||+..|+..|...|.+|..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5689999875 7999999999999888888753
No 44
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=78.73 E-value=6.8 Score=36.73 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=56.9
Q ss_pred EEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEE---Ccc
Q 011395 352 LLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLV---GDR 428 (487)
Q Consensus 352 ~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~---g~~ 428 (487)
+++.++|..||.-| +| ..+.+.++.+++..+ .|+.+|+|++. +...+++..++..+++.+.++++++++ |+.
T Consensus 167 vi~~~~GlvvitGC-sH--~GI~Niv~~a~~~~g-~~i~~viGGfH-L~~~~~~~l~~tl~~l~~~~~~~i~~~HCTg~~ 241 (267)
T 3h3e_A 167 VVRTKEGLVVITGC-SH--RGIDNILLDIAETFN-ERIKMVVGGFH-LLKSSDDEIEKIVKAFNELGVETVVPCHCTGER 241 (267)
T ss_dssp EEEETTEEEEEESC-CT--TCHHHHHHHHHTTCS-SCEEEEEEECC-CTTSCHHHHHHHHHHHHHTTCCEEEEETTSCHH
T ss_pred EEEcCCcEEEEeCC-CC--cCHHHHHHHHHHHhC-CCceEEEeccc-cCCCCHHHHHHHHHHHHhcCCCEEEEECCCCHH
Confidence 55566788888885 55 578888898988873 78899999865 445566777888999999999999975 555
Q ss_pred HHH
Q 011395 429 FRA 431 (487)
Q Consensus 429 ~~~ 431 (487)
+..
T Consensus 242 a~~ 244 (267)
T 3h3e_A 242 AVD 244 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 45
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=77.67 E-value=2.2 Score=41.07 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|.+ |||||+..|+..|...+.+|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~ 136 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 136 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE
Confidence 4689999986 799999999999987787774
No 46
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=77.57 E-value=2.1 Score=40.76 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=26.9
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.++|+|+| -.||||++.-|+..|.+.|++|.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vl 73 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 73 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEE
Confidence 3567888874 46799999999999988898885
No 47
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=77.07 E-value=2 Score=40.55 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=26.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|+|+ |-.||||++..|+..|.+.|++|..
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 588888 4568999999999999888999853
No 48
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=75.51 E-value=2.2 Score=39.45 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.2
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTG---SVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTG---TnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|+|++ -.||||++..|+..|.+.|++|..
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 4677764 568999999999999888988853
No 49
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=75.45 E-value=2.7 Score=39.08 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=27.2
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGSV---GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
.++|+|+++. ||||++..|+..|.+.|++|..
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vll 52 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGI 52 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5789988765 6999999999999888988853
No 50
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=75.20 E-value=2.3 Score=39.50 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCCcEEEEeCCC---ChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSV---GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTn---GKTTT~~ml~~iL~~~g~~v~ 162 (487)
....++|+|++.+ ||||++..|+..|. .|++|.
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vl 59 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVL 59 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEE
Confidence 3457899997665 79999999999996 888875
No 51
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=74.84 E-value=2.8 Score=38.55 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=25.6
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|+|+++ .||||++..|+..|.+.|++|..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 57888654 57999999999999888888853
No 52
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.41 E-value=3.1 Score=36.21 Aligned_cols=32 Identities=34% Similarity=0.415 Sum_probs=26.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+|.++|- .||||....|+..|...|+++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4568999997 6799999999999977777664
No 53
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=74.38 E-value=4.1 Score=41.47 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEeCCCChHhH-HHHHHHHHHh
Q 011395 134 LVGVTGSVGKSTT-KSMIALALES 156 (487)
Q Consensus 134 vI~VTGTnGKTTT-~~ml~~iL~~ 156 (487)
+|+|| |||||+| +.+|..-|++
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~ 145 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLES 145 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHH
Confidence 89999 9999998 8888888843
No 54
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.26 E-value=3.5 Score=35.96 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=26.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++++|+|. .||||+...|...|...+++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 689999998 4899999999988877888875
No 55
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.56 E-value=3.4 Score=36.04 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=24.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+|+|||. .||||.+.+|++.|...|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5888885 68999999999999888888753
No 56
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=73.08 E-value=3.1 Score=37.24 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.1
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhCCCceE
Q 011395 134 LVGVT---GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 134 vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+|+|+ |-.||||++..|+..|.+.| +|.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vl 32 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETL 32 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEE
Confidence 56665 66799999999999997778 875
No 57
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=72.00 E-value=5.6 Score=37.75 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 011395 129 RFSGVLVGVTGS--VGKSTTKSMIALALES 156 (487)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~ 156 (487)
..+..+|+|+|. .||||++.+|...|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345678999997 6899999999999954
No 58
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=71.19 E-value=2.5 Score=40.19 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
+..+|+|||.. ||||++.+|+..|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999985 899999999999854
No 59
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=71.18 E-value=4.1 Score=39.78 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
....++|.|+ |-.||||++.-++..|.+.|++|..
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 59 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVI 59 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 4456777777 6678999999999999888999853
No 60
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=70.72 E-value=4.1 Score=40.48 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.3
Q ss_pred hhcCCCCcEEEEe---CCCChHhHHHHHHHHHHh------CCCceE
Q 011395 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALES------LGVNVF 162 (487)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~~------~g~~v~ 162 (487)
+.+....++|+|+ |-.|||||+..|+..|.. .|++|.
T Consensus 102 ~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVl 147 (398)
T 3ez2_A 102 RDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRIL 147 (398)
T ss_dssp GGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEE
T ss_pred CcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 4435567899998 456899999999999953 477764
No 61
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=70.02 E-value=2.4 Score=42.21 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=22.9
Q ss_pred hhcCCCCcEEEEe---CCCChHhHHHHHHHHHH------hCCCceE
Q 011395 126 RNSRFSGVLVGVT---GSVGKSTTKSMIALALE------SLGVNVF 162 (487)
Q Consensus 126 ~~p~~~~~vI~VT---GTnGKTTT~~ml~~iL~------~~g~~v~ 162 (487)
+.+....++|+|+ |-.|||||+..|+..|. ..|++|.
T Consensus 105 r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVl 150 (403)
T 3ez9_A 105 RDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRIL 150 (403)
T ss_dssp HHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEE
T ss_pred CCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEE
Confidence 3335568899999 66799999999999995 3577764
No 62
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=69.84 E-value=4.4 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.6
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+++|.|+ |-.||||++.-++..|.+.|++|..
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLl 47 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLV 47 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEE
Confidence 3666666 7778999999999999888999853
No 63
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=69.51 E-value=2.5 Score=39.00 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=20.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
|..+.|+..... +..+..+|+|||. .||||++.+|+..|
T Consensus 6 ~~~~~~~~~~~~---~~~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 6 DSEQTLQNHQQP---NGGEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred chHHHHHHhhhc---cCCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 666666665552 1334568999997 59999999999987
No 64
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=69.08 E-value=5.3 Score=34.39 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=25.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|++||.. ||||+..+|+..|...|+.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 5688999985 899999999999976676654
No 65
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=68.89 E-value=3.4 Score=35.94 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=25.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+|.+ ||||+..+|..+++..|++++
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G 34 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVA 34 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceE
Confidence 4689999975 799999999999987777764
No 66
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=68.75 E-value=4.3 Score=35.90 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=26.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|. .||||.+.+|+.-|...++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 467889986 7999999999999977777763
No 67
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=68.74 E-value=3.5 Score=37.81 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|||+|-| ||||+..+|+.+|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999997 7999999999988
No 68
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=68.27 E-value=5.5 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=24.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+|+|||. .||||.+.+|+.-|...|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5778876 58999999999999777877653
No 69
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=68.12 E-value=4.3 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=29.2
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 131 SGVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+.+.|.|||| .|||||+..|.+.|++.|+++..
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~ 186 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKF 186 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEE
Confidence 4678999998 59999999999999999999853
No 70
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.76 E-value=5.4 Score=38.13 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|++.|-| |||||...|+..++..+.++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4588888877 899999999999987777764
No 71
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=67.29 E-value=4.7 Score=35.63 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
..+|+|+|. .||||.+.+|+.-|...++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 568899987 699999999999997777766
No 72
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=67.02 E-value=3.4 Score=36.69 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+..+|+|+|-+ ||||+..+|+.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999986 59999999999993
No 73
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=66.95 E-value=7.8 Score=37.39 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=27.0
Q ss_pred HHHHHHHH-HHhhc-CCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 116 NSLVNMAC-YARNS-RFSGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 116 ~aL~~la~-~~~~p-~~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
++|..+.. +...+ .....+|||+|.+ ||||++.+|..+|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444443 44442 2234489999976 79999999999994
No 74
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.12 E-value=6.5 Score=37.61 Aligned_cols=32 Identities=34% Similarity=0.443 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+|+|.|-| ||||+...|+.+++..+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 35688888776 699999999999987777764
No 75
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=64.77 E-value=7 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+|++.|-| |||||...|+.+++..+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 35688888876 699999999999988887764
No 76
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.75 E-value=5.4 Score=35.29 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=23.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
-.+|+|||- .||||++.+|+..| |+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g~~vi 41 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---GAHVV 41 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCEEE
Confidence 568999997 59999999999987 66654
No 77
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=64.06 E-value=5.6 Score=39.15 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=27.3
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGS---VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.++|+|++. .||||++.-|+..|.+.|++|.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVl 176 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVF 176 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEE
Confidence 34789999865 4799999999999977788875
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=64.04 E-value=6.3 Score=34.01 Aligned_cols=30 Identities=37% Similarity=0.364 Sum_probs=23.5
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 33 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 46777776 6999999999999966666553
No 79
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=63.14 E-value=5.5 Score=38.04 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
.+..+|||+|.+ ||||+..+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446799999987 59999999999994
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.51 E-value=7.2 Score=38.26 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=25.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|++.|-| |||||...|+.+++..+.++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~ 189 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 189 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence 4588888877 899999999999987777764
No 81
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.56 E-value=5 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|+|-| ||||+..+|..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999987 7999999999886
No 82
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.16 E-value=5.7 Score=35.05 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEeCCCC--hHhHHHHHHHHHHhCC
Q 011395 134 LVGVTGSVG--KSTTKSMIALALESLG 158 (487)
Q Consensus 134 vI~VTGTnG--KTTT~~ml~~iL~~~g 158 (487)
+++|+|-|| |||+..+|+..++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 577777765 9999999999997555
No 83
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=60.86 E-value=4.1 Score=35.89 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=20.7
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|+|||.+ ||||.+.+|+. | |+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g~~~i 29 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---GAYVL 29 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---TCEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---CCEEE
Confidence 478999875 89999999998 6 55554
No 84
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=60.79 E-value=4.1 Score=39.98 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.3
Q ss_pred CcEEEEeCC---CChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGS---VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGT---nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+++|+|++. .||||++.-|+..|.+.|++|..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 357777755 58999999999999888999853
No 85
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=60.59 E-value=16 Score=35.42 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=27.9
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+.++|+|+|. .||||+..-|...|...|.+|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 445778999986 4799999999998877888874
No 86
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=59.97 E-value=8.6 Score=39.44 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEe
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+|+|.|-| ||||+...|+.+++..+.++..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 4588888887 7999999999999877777653
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=59.54 E-value=6.2 Score=34.62 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
++|+|||. .||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 38999997 59999999999988
No 88
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.24 E-value=7.1 Score=34.00 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEeCCCC--hHhHHHHHHHHH
Q 011395 134 LVGVTGSVG--KSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGTnG--KTTT~~ml~~iL 154 (487)
.++|+|-|| |||+..+|..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 589999987 999999999999
No 89
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.17 E-value=7.1 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+|.|+|. .||||++.+|+..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899997 57999999999888
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.11 E-value=7.4 Score=37.33 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=23.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALALES 156 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL~~ 156 (487)
.+..+|||.|.| ||||+..+|..+|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 346799999987 899999999999953
No 91
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=57.45 E-value=1.1e+02 Score=29.98 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=63.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHccccCCcEEEE--EcCCCCCCcccHHHHHHHHHHHHHc--CCCEEE-EECccHHHHHH
Q 011395 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVVI--LGDMLELGSTERESHEKILSYCCDA--CIDLIG-LVGDRFRAAAE 434 (487)
Q Consensus 360 ~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~V--lg~m~e~G~~~~~~~~~~~~~l~~~--~~d~vi-~~g~~~~~i~~ 434 (487)
.++|=..+++.+.+..+++.+-+-+ .-+.++| ||++. +.+...+.+.+.+.+. ..-.|+ +-|.+...-.+
T Consensus 285 NflD~gG~a~~~~~~~~~~~il~d~-~v~~ilvni~ggi~----~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~ 359 (388)
T 2nu8_B 285 NFLDVGGGATKERVTEAFKIILSDD-KVKAVLVNIFGGIV----RCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAK 359 (388)
T ss_dssp EEEECCSCCCHHHHHHHHHHHHTST-TCCEEEEEEESCSS----CHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHH
T ss_pred ceeEecCCCCHHHHHHHHHHHhcCC-CCCEEEEEecCCcC----CchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHH
Confidence 4555456778999999999886544 3344444 66542 3455566777777663 223332 34777777666
Q ss_pred HhhhhcCCeEEEECCHHHHHHHHHhhCC
Q 011395 435 NMNLIKTDYIVVTNDAEILSQKIVKRLK 462 (487)
Q Consensus 435 ~~~~~~~~~~~~~~d~~~ai~~l~~~~~ 462 (487)
.+.+.+ -.++.++++++|.+.+.+.++
T Consensus 360 ~l~~~g-~~~~~~~~~~~aa~~~v~~~~ 386 (388)
T 2nu8_B 360 KLADSG-LNIIAAKGLTDAAQQVVAAVE 386 (388)
T ss_dssp HHHTTC-SSEEECSSHHHHHHHHHHHTT
T ss_pred HHHHCC-CceecCCCHHHHHHHHHHHhh
Confidence 665543 346667999999999988764
No 92
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=56.94 E-value=7.6 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.+|+|||. .||||++.+|+.-| |+.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 3678999997 68999999999988 45543
No 93
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=56.87 E-value=6.4 Score=34.71 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=20.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
.+|++||.+ ||||+..+|+. | |+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l---g~~~ 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L---GVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T---TCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C---CCcc
Confidence 479999985 89999999987 3 5554
No 94
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=55.90 E-value=9.7 Score=34.27 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+..||+||. .||||++.+++. + |+.+.
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~---g~~vi 37 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-R---GASLV 37 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 34778999997 689999999876 4 77764
No 95
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=55.90 E-value=19 Score=34.72 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=28.4
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+..+|+|+|.+ ||||+...|...+...+.++.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4557899999986 799999999999987787764
No 96
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=55.68 E-value=7.3 Score=35.95 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=23.9
Q ss_pred cEEEE--eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGV--TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~V--TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+| -|-.||||++..|+..|.+.|++|.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vl 33 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIM 33 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEE
Confidence 34444 4567899999999999987888885
No 97
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.43 E-value=8.2 Score=34.45 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+|+|||.+ ||||...+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999985 5999999999988
No 98
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.19 E-value=6.2 Score=35.66 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=15.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHH-HHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIA-LAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~-~iL 154 (487)
..+|+|+|-| ||||+..+|. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999998 6999999999 877
No 99
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=55.14 E-value=33 Score=34.41 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.5
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+|+|+|- .|||||+.-|+..|...|++|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVl 131 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPA 131 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 46777764 5899999999999988888874
No 100
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=55.05 E-value=9.5 Score=33.50 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+..+|+|+|-+ ||||+..+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999986 6999999999988
No 101
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=54.79 E-value=12 Score=37.66 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhC-CCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESL-GVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~-g~~v~ 162 (487)
.++|.|+|. .|||||+.-|+..|... |++|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVl 133 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVL 133 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE
Confidence 457777654 58999999999999888 88885
No 102
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.24 E-value=12 Score=35.39 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=26.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|- .||||++..|+..+...+.+|.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~ 130 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468888885 5799999999999987787775
No 103
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=54.24 E-value=7.6 Score=33.90 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+..+|+|||. .||||++.+|+.. |+.+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~----g~~~i 36 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW----GYPVL 36 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT----TCCEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC----CCEEE
Confidence 334678999997 5899999998874 65543
No 104
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.90 E-value=12 Score=32.80 Aligned_cols=30 Identities=33% Similarity=0.342 Sum_probs=24.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCc
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (487)
+..+|+|+|- .||||+..+|+..|...|..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 4678999997 57999999999999655543
No 105
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=53.48 E-value=8.8 Score=33.99 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.5
Q ss_pred CChHhHHHHHHHHHHhCCCceEec
Q 011395 141 VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 141 nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
.||||-+.+|+.-|++.|+++..+
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEE
Confidence 699999999999999999988654
No 106
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=53.43 E-value=6 Score=34.43 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
.+|+|+|-| ||||+..+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888877 59999999999884
No 107
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=53.13 E-value=8.6 Score=36.03 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=25.0
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|+|+ |-.||||++.-|+..|.+.|++|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVl 34 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVM 34 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEE
Confidence 3455554 567999999999999988899985
No 108
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=53.04 E-value=12 Score=34.89 Aligned_cols=60 Identities=27% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCcEEEEeC----CCChHhHHHHHHHHHHhCCCceEe--cCCCCCCcchhhhHhhcCCCCCcEEEEeccC
Q 011395 131 SGVLVGVTG----SVGKSTTKSMIALALESLGVNVFQ--SYGNWNNRVGVALSLIGIDRAVDIAVLEMGM 194 (487)
Q Consensus 131 ~~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~~--t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~ 194 (487)
+++.|-||| +-||.-|++-|..+|++.|++|.. .--..|-.-| |+.- -+.-|++|.|=|.
T Consensus 22 ~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~G---TMsP-~qHGEVfVtdDG~ 87 (295)
T 2vo1_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDAG---TFSP-YEHGEVFVLDDGG 87 (295)
T ss_dssp CCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC-----------------------
T ss_pred cceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCCC---CCCh-hhhceEEeecccc
Confidence 478999999 789999999999999999999852 1223343333 1111 1245777777653
No 109
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=53.01 E-value=11 Score=31.98 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+..+|+++|- .||||+..+|+..|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999998 57999999999887
No 110
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=52.92 E-value=98 Score=30.50 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHHccccCCcEEE--EEcCCCCCCcccHHHHHHHHHHHHHcC--CCEEE-EECccHHHHHH
Q 011395 360 KIVNDAYNANPISTRAAIDLLKDIACNGKRVV--ILGDMLELGSTERESHEKILSYCCDAC--IDLIG-LVGDRFRAAAE 434 (487)
Q Consensus 360 ~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~--Vlg~m~e~G~~~~~~~~~~~~~l~~~~--~d~vi-~~g~~~~~i~~ 434 (487)
.++|=..+++++.+..+++.+-+-+ .-+.++ |||++. +.+...+.+.+.+.+.+ .-.|+ +.|.+..+-.+
T Consensus 292 NflDvgG~a~~e~~~~al~~il~d~-~v~~ilvni~ggi~----~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~ 366 (395)
T 2fp4_B 292 NFLDLGGGVKESQVYQAFKLLTADP-KVEAILVNIFGGIV----NCAIIANGITKACRELELKVPLVVRLEGTNVHEAQN 366 (395)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHHCT-TCCEEEEEEEESSS----CHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHH
T ss_pred CcEEECCCCCHHHHHHHHHHHhCCC-CCCEEEEEecCCcc----CcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHH
Confidence 3444345678999999999886644 333333 567542 34556667777776632 22222 34777766666
Q ss_pred HhhhhcCCeEEEECCHHHHHHHHHhhCC
Q 011395 435 NMNLIKTDYIVVTNDAEILSQKIVKRLK 462 (487)
Q Consensus 435 ~~~~~~~~~~~~~~d~~~ai~~l~~~~~ 462 (487)
.+.+.+ -.++.++++++|.+.+.+.++
T Consensus 367 ~L~~~g-l~~~~~~~~~~Aa~~~v~~~~ 393 (395)
T 2fp4_B 367 ILTNSG-LPITSAVDLEDAAKKAVASVT 393 (395)
T ss_dssp HHHHTC-SCCEECSSHHHHHHHHHHTTC
T ss_pred HHHHCC-CceEeCCCHHHHHHHHHHHhh
Confidence 665443 345677999999999988764
No 111
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=52.32 E-value=16 Score=32.80 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=27.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceEec
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~~t 164 (487)
..+|.+.|.. ||||.+..|+.-|...|+++..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4578888865 79999999999998888887543
No 112
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=51.81 E-value=15 Score=33.00 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=24.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCC-ceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGV-NVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~-~v~ 162 (487)
..+|.+.|.. ||||.+..|.+.|+..|+ .+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~ 36 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV 36 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcce
Confidence 3567777765 699999999999998887 544
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=51.02 E-value=8.1 Score=32.77 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.3
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+|+|+|.+ ||||...+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999985 8999999999988
No 114
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=50.90 E-value=7.7 Score=33.96 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|+|.+ ||||+..+|...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999986 7999999998877
No 115
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=50.05 E-value=14 Score=35.06 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=25.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+++|- .||||++..|+..+...|.+|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~ 130 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG 130 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 457888775 4799999999999988888875
No 116
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=49.23 E-value=10 Score=32.03 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
++|.|+|. .||||.+.+|+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 46888886 69999999999988
No 117
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=48.44 E-value=17 Score=33.15 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCc
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVN 160 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (487)
+..+|.|.|-. ||||.+..|...|...|++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 35678888864 7999999999999988888
No 118
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=48.16 E-value=29 Score=33.42 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=28.0
Q ss_pred CCCCcEEEEeCCCC--hHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSVG--KSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTnG--KTTT~~ml~~iL~~~g~~v~ 162 (487)
..+..+++|+|.+| |||+..+|..++...+.++.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~ 87 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVA 87 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEE
Confidence 34578999999986 99999999999977676763
No 119
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=47.97 E-value=12 Score=35.98 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=24.9
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhCCCceEe
Q 011395 133 VLVGVT---GSVGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 133 ~vI~VT---GTnGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
++|.|+ |-.||||++..|+..|.+.|++|..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 344444 6689999999999999888999863
No 120
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=47.68 E-value=6.6 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=20.4
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-.||||++.-|+..|.+.|++|.
T Consensus 8 kGGvGKTt~a~~LA~~la~~g~~Vl 32 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDYDKIY 32 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 4556799999999999977777764
No 121
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=46.67 E-value=14 Score=31.07 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.|+|+|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 5788886 69999999999988
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=46.55 E-value=29 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcC-CCCcEEEEeCCC--ChHhHHHHHHHHHH-hCCCce
Q 011395 114 TLNSLVNMACYARNSR-FSGVLVGVTGSV--GKSTTKSMIALALE-SLGVNV 161 (487)
Q Consensus 114 ~~~aL~~la~~~~~p~-~~~~vI~VTGTn--GKTTT~~ml~~iL~-~~g~~v 161 (487)
-.+++..+-.+...-. .....++++|.+ ||||+...++..+. ..|..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 3455554444443201 125689999975 69999999999996 456554
No 123
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=46.27 E-value=16 Score=31.80 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCC
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLG 158 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g 158 (487)
..+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 357889986 799999999999994433
No 124
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=46.05 E-value=16 Score=31.60 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=19.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALA 153 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~i 153 (487)
+.+.|++||.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999985 699999999987
No 125
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=45.84 E-value=22 Score=30.39 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=21.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCC
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLG 158 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g 158 (487)
.+|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 47888886 699999999999995544
No 126
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.67 E-value=33 Score=31.16 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 115 LNSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
...+.++++.+..+..+...|+|+|-- ||||.+.+|+.-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345566666443324456689999984 7999999998877
No 127
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=45.51 E-value=26 Score=30.82 Aligned_cols=33 Identities=15% Similarity=0.012 Sum_probs=22.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.+++.+||. .||||..--+..=+...|++|.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~ 40 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQ 40 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 44679999999 6666655555554546888885
No 128
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=45.48 E-value=19 Score=37.07 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.++|+|+|. .|||||+.-|+..|...|.+|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVl 133 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTC 133 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 457888886 5799999999999988888874
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=45.41 E-value=12 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+..+|+|+|-+ ||||+..+|...+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35789999987 6999999998877
No 130
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=44.87 E-value=15 Score=31.44 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.++|+++|. .||||.+.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899997 58999999999888
No 131
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=44.86 E-value=19 Score=36.05 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|- .|||||+..|+..|...|.+|.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 457777775 4799999999999988888874
No 132
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=44.84 E-value=47 Score=32.07 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=26.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++|+|+|.+ ||||+...|...+...+.++.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 37899999996 699999999998877777764
No 133
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.64 E-value=12 Score=32.06 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
++|+|+|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 45888886 79999999999988
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=44.36 E-value=17 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=24.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhC-CCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESL-GVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~-g~~v 161 (487)
..+++|+|-| ||||+..+|...+... ..++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I 57 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 57 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence 5689999987 8999999999998643 3444
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=44.32 E-value=19 Score=33.80 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=17.4
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCC
Q 011395 135 VGVTGSVGKSTTKSMIALALESLG 158 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g 158 (487)
.|=+|| |||+++..++..|...+
T Consensus 73 ~G~~Gt-GKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 73 TGNPGT-GKTTVALKMAGLLHRLG 95 (309)
T ss_dssp EECTTS-SHHHHHHHHHHHHHHTT
T ss_pred ECCCCC-CHHHHHHHHHHHHHhcC
Confidence 444444 99999999999996544
No 136
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=44.09 E-value=24 Score=31.88 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEec
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
...+|.|.|- .||||.+.+|+..|.. ++++..+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4568888887 4799999999999966 7776543
No 137
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=43.30 E-value=16 Score=35.59 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=24.3
Q ss_pred CcEEEE--eCCCChHhHHHHHHHHHH--hCCCceE
Q 011395 132 GVLVGV--TGSVGKSTTKSMIALALE--SLGVNVF 162 (487)
Q Consensus 132 ~~vI~V--TGTnGKTTT~~ml~~iL~--~~g~~v~ 162 (487)
.+++.+ .|-.||||++..++..|. ..|.+|.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vl 52 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFL 52 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 344444 466789999999999997 6888885
No 138
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=42.27 E-value=17 Score=35.22 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.0
Q ss_pred eCCCChHhHHHHHHHHHHhCCCceE
Q 011395 138 TGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|-.||||++.-++..|.+.|++|.
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vl 48 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVL 48 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEE
Confidence 4778899999999999988888885
No 139
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.69 E-value=9.3 Score=33.66 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
...+|+|+|. .||||.+.+|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999995 67999999988766
No 140
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.67 E-value=16 Score=32.27 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+..+++|.|-| ||||+..+|..++.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999988 79999999999983
No 141
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=41.48 E-value=20 Score=32.25 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
...+|+|+|.+ ||||+..+|+..|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999986 7999999999888
No 142
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=41.44 E-value=12 Score=33.44 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.1
Q ss_pred EEEEeCCCChHhHHHHHHHHH
Q 011395 134 LVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGTnGKTTT~~ml~~iL 154 (487)
++|..|| ||||.+..|+.-|
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l 29 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKY 29 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHH
T ss_pred EECCCCC-CHHHHHHHHHHHh
Confidence 4455555 9999999999988
No 143
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=41.13 E-value=21 Score=32.37 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh-CCCceEe
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALES-LGVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~-~g~~v~~ 163 (487)
+..+|.+.|.. ||||.+..|+.-|.. .|+++..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 35688888865 699999999999988 8888764
No 144
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=40.87 E-value=25 Score=35.80 Aligned_cols=35 Identities=37% Similarity=0.381 Sum_probs=29.9
Q ss_pred CCCCcEEEEeCC------CChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
+.+.++|.||.+ -|||||+.=|+..|.+.|.+|..
T Consensus 54 ~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 54 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp SCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 445789999987 57999999999999899999853
No 145
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=40.82 E-value=19 Score=31.43 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.++|+|+|-+ ||||.+..|+..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999975 7999999999988
No 146
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=40.74 E-value=19 Score=34.50 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCCCcEEEE----eCCCChHhHHHHHHHHHHhCC
Q 011395 129 RFSGVLVGV----TGSVGKSTTKSMIALALESLG 158 (487)
Q Consensus 129 ~~~~~vI~V----TGTnGKTTT~~ml~~iL~~~g 158 (487)
+.+.|||.| .|-.|||-++..|...|+..+
T Consensus 33 ~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 33 KLPVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp CCSSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred cCCCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 456889998 799999999999999996543
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=40.60 E-value=16 Score=32.06 Aligned_cols=23 Identities=26% Similarity=0.151 Sum_probs=18.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||+..+|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567888876 8999999999987
No 148
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=40.55 E-value=24 Score=35.58 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCC
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGV 159 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~ 159 (487)
+=++|+..+..+... .. ..+.|+|- .||||+...+...|...+.
T Consensus 29 ~Q~~av~~~~~~i~~-~~--~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 29 GQKNAFNIVMKAIKE-KK--HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp HHHHHHHHHHHHHHS-SS--CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc-CC--CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 456677766665444 22 24555553 3899999888888877776
No 149
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=40.16 E-value=25 Score=31.84 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhC----CCceEe
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESL----GVNVFQ 163 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~----g~~v~~ 163 (487)
+...|.|.|-. ||||.+..|++-|... |+++..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~ 62 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVV 62 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeee
Confidence 35688888876 5999999999999776 877653
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=40.09 E-value=29 Score=31.87 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=24.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++|.++|- .||||.+..|+.-|...|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 456777774 5999999999999976776654
No 151
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=40.02 E-value=25 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=19.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|.|+|. .||||.+.+|+.-|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 447889887 58999999999988
No 152
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=39.70 E-value=35 Score=29.96 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH-hCCCce
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALE-SLGVNV 161 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~-~~g~~v 161 (487)
...+|.|+|. .||||.+.+|+..|. ..|+++
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 3568888886 689999999999996 556544
No 153
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=39.58 E-value=23 Score=30.82 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.++|.++|.. ||||+...|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5677888765 8999999999988
No 154
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.45 E-value=20 Score=31.75 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|||.. ||||.+.+|+. | |+.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l---g~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L---GINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T---TCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c---CCEEE
Confidence 3589999975 89999999987 4 65544
No 155
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=38.89 E-value=2.1e+02 Score=25.54 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCccc--HHHHHHHHHHHHHcCCCEEEEECccHHH
Q 011395 368 ANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTE--RESHEKILSYCCDACIDLIGLVGDRFRA 431 (487)
Q Consensus 368 ~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~--~~~~~~~~~~l~~~~~d~vi~~g~~~~~ 431 (487)
..+++++.+++.+++. ++.+.|+..|.+.|... ......+++...+.+.+-+++-...+.+
T Consensus 101 ~G~~~l~~~~~~~~~~---g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e 163 (228)
T 3m47_A 101 PGADSVRACLNVAEEM---GREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPER 163 (228)
T ss_dssp TCHHHHHHHHHHHHHH---TCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHH
T ss_pred CCHHHHHHHHHHHHhc---CCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHH
Confidence 3578999999998763 45688888887665332 2344567777778888887765544444
No 156
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=38.75 E-value=31 Score=32.00 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCcEEEEeCC----CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS----VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT----nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+++.|-|||- -||.-|++-|..+|++.|++|.
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 3788999984 5999999999999999999985
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=38.70 E-value=21 Score=30.75 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|.|+|. .||||.+.+|+.-|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457778776 58999999999888
No 158
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=38.47 E-value=2.6e+02 Score=27.45 Aligned_cols=94 Identities=11% Similarity=0.062 Sum_probs=60.4
Q ss_pred EEEecCCCCHHHHHHHHHHHHccccCCcEEE--EEcCCCCCCcccHHHHHHHHHHHHHc--CCCEE-EEECccHHHHHHH
Q 011395 361 IVNDAYNANPISTRAAIDLLKDIACNGKRVV--ILGDMLELGSTERESHEKILSYCCDA--CIDLI-GLVGDRFRAAAEN 435 (487)
Q Consensus 361 ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~--Vlg~m~e~G~~~~~~~~~~~~~l~~~--~~d~v-i~~g~~~~~i~~~ 435 (487)
.+|=...++++.+..+++.+-.-+ .-+-++ |+|.+ .+.+...+.+.+.+.+. +.-.| -+.|.+..+-.+.
T Consensus 277 ~lD~gG~a~~e~~~~al~~~l~d~-~v~~ilv~i~ggi----~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~~~~~~ 351 (397)
T 3ufx_B 277 FLDIGGGAKADVVYNALKVVLKDP-DVKGVFINIFGGI----TRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKL 351 (397)
T ss_dssp EEECCSCCCHHHHHHHHHHHHTCT-TCCEEEEEEEEEE----EESHHHHHHHHHHHTTTCCCSCEEEEEEEECHHHHHHH
T ss_pred cEecCCCCCHHHHHHHHHHHHcCC-CCCEEEEECCCCC----CCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHHHHHHH
Confidence 444445678999999999987644 223333 45532 34566667777777654 12222 2347666666666
Q ss_pred hhhhcCCeEEEECCHHHHHHHHHhhCC
Q 011395 436 MNLIKTDYIVVTNDAEILSQKIVKRLK 462 (487)
Q Consensus 436 ~~~~~~~~~~~~~d~~~ai~~l~~~~~ 462 (487)
+.+. .+..++++++|++.+.+.++
T Consensus 352 l~~~---gip~~~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 352 LEGK---PVYMYPTSIEAAKVTVAMKG 375 (397)
T ss_dssp TTTS---SEEECSSHHHHHHHHHHSCC
T ss_pred HHhC---CCcccCCHHHHHHHHHHHHH
Confidence 5543 37789999999999987765
No 159
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=38.02 E-value=15 Score=31.27 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=17.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|.|+|. .||||.+.+|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999997 68999999998877
No 160
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=37.75 E-value=21 Score=30.62 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..++|+|+|-+ ||||+..+|...+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999976 6999999998876
No 161
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=37.41 E-value=25 Score=34.29 Aligned_cols=30 Identities=37% Similarity=0.277 Sum_probs=23.5
Q ss_pred CcEEEEeCCCC--hHhHHHHHHHHHHhC-CCce
Q 011395 132 GVLVGVTGSVG--KSTTKSMIALALESL-GVNV 161 (487)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL~~~-g~~v 161 (487)
..+|+|+|-+| ||||...|...+... +..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 34899999875 999999999988654 4444
No 162
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=37.41 E-value=20 Score=31.86 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhCCCceEec
Q 011395 134 LVGVTGS--VGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
.|.|-|- .||||.+.+|+.-| ..|+++..+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEe
Confidence 4555553 58999999999999 568887654
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.30 E-value=29 Score=30.59 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+++|+|.| ||||+...+...+...+.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~ 55 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5689999986 599999999866645555553
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=37.28 E-value=21 Score=32.73 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|+|-+ ||||+..+|+.-|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999986 6999999999877
No 165
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=37.07 E-value=27 Score=33.93 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=22.5
Q ss_pred eCCCChHhHHHHHHHHHH--hCCCceEe
Q 011395 138 TGSVGKSTTKSMIALALE--SLGVNVFQ 163 (487)
Q Consensus 138 TGTnGKTTT~~ml~~iL~--~~g~~v~~ 163 (487)
.|-.||||++.-|+..|. +.|++|.-
T Consensus 26 KGGvGKTTvaanLA~~lA~~~~G~rVLL 53 (354)
T 2woj_A 26 KGGVGKTTSSCSIAIQMALSQPNKQFLL 53 (354)
T ss_dssp STTSSHHHHHHHHHHHHHHHCTTSCEEE
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 477899999999999997 78999853
No 166
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=37.02 E-value=72 Score=27.42 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCC--CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 115 LNSLVNMACYARNSRF--SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 115 ~~aL~~la~~~~~p~~--~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+++..+..+...... ....+.++|.. |||+.+..++..+...+.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3455555555444111 12678888875 899999999998866666653
No 167
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=36.02 E-value=19 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|. .||||.+.+|+.-| .|+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~ 34 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIK 34 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceE
Confidence 457889986 69999999998877 244443
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=35.73 E-value=24 Score=30.69 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+..+|+|+|. .||||.+.+|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999997 47999999998766
No 169
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=35.41 E-value=40 Score=30.39 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceEe
Q 011395 129 RFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVFQ 163 (487)
Q Consensus 129 ~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~~ 163 (487)
..+..++.|||. .||||..--+..-+...|.+|..
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 344679999999 67777665555555567888753
No 170
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=35.06 E-value=24 Score=32.92 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|||.. ||||++.+|+. + |+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-l---g~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-L---GAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-H---TCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C---CCcEE
Confidence 4689999984 89999999984 4 56554
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=34.87 E-value=42 Score=27.89 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=25.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
....+++.|.+ ||||+..++...+...|.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~ 68 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAA 68 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEE
Confidence 46788899976 899999999999976665543
No 172
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=34.58 E-value=28 Score=30.01 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=17.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.|+|+|. .||||.+..|+.-|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 5777776 57999999999988
No 173
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.94 E-value=77 Score=28.35 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+....+..|..+.+. ..+...+.+.|. .||||++.-|+..|
T Consensus 40 ~~~~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 40 EFITFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CHHHHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 666677777776555 222346888887 79999999999888
No 174
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=33.85 E-value=13 Score=32.73 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.++|.|+|- .||||....|...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456666664 48999999998876
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=33.50 E-value=25 Score=29.98 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.4
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+.+|+|-| ||||+...|..+|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999987 5999999999998
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.32 E-value=25 Score=30.15 Aligned_cols=20 Identities=45% Similarity=0.434 Sum_probs=16.7
Q ss_pred cEEEEeCCC--ChHhHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIAL 152 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~ 152 (487)
.+|+++|.| ||||+..+|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 468888885 79999999975
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=32.99 E-value=84 Score=25.54 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=16.9
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhCCCc
Q 011395 135 VGVTGS--VGKSTTKSMIALALESLGVN 160 (487)
Q Consensus 135 I~VTGT--nGKTTT~~ml~~iL~~~g~~ 160 (487)
|-++|- .|||+.+..|+......+..
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 344444 38999999998876433433
No 178
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=32.82 E-value=40 Score=34.15 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCCcEEEEeCC------CChHhHHHHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGS------VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGT------nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+.+.+.|-||+- -|||||+-=|.+.|...|.++.
T Consensus 40 ~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~ 79 (543)
T 3do6_A 40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSI 79 (543)
T ss_dssp SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeE
Confidence 345789999998 6999999999999999998875
No 179
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=32.80 E-value=43 Score=35.34 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
+..+|.+||. .||||.+..|+..|.+.|+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 5668999996 7999999999999977787764
No 180
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=32.60 E-value=32 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=18.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+|+|+|. .||||.+..|+.-|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888887 48999999998877
No 181
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=32.42 E-value=42 Score=29.05 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=20.0
Q ss_pred CcEEEEeCC--CChHhHH-HHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTK-SMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~-~ml~~iL~~~g~~v~ 162 (487)
..++.+||. .||||.. .++.... ..|.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~ 35 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVA 35 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 357888988 5788876 4444444 6777764
No 182
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=32.32 E-value=13 Score=32.77 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.|..| .||||.+..|...|...|+++.
T Consensus 6 ~G~~G-sGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 6 EGVDG-AGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEE-EEHHHHHHHHHHHHHEEEEEEE
T ss_pred EcCCC-CCHHHHHHHHHHHHHhcCCeEE
Confidence 34444 4999999999999965555543
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=32.14 E-value=1.1e+02 Score=26.78 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 115 LNSLVNMACYARNSRFSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 115 ~~aL~~la~~~~~p~~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++..+..+...+ ..+.+.|+|- .||||++..++.-+...+.++.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~ 84 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSF 84 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 34555555544331 3567888886 4799999999998876666553
No 184
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=32.11 E-value=63 Score=26.48 Aligned_cols=91 Identities=8% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHH
Q 011395 331 VSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKI 410 (487)
Q Consensus 331 ~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~ 410 (487)
+|++++.++..+..+ ....+.=+..++...++..++.+++.. .+...+++|+. .--..+.+.+.
T Consensus 41 ~p~e~~v~~a~~~~~------------d~v~lS~~~~~~~~~~~~~i~~l~~~g-~~~i~v~vGG~---~~~~~~~~~~~ 104 (137)
T 1ccw_A 41 SPQELFIKAAIETKA------------DAILVSSLYGQGEIDCKGLRQKCDEAG-LEGILLYVGGN---IVVGKQHWPDV 104 (137)
T ss_dssp ECHHHHHHHHHHHTC------------SEEEEEECSSTHHHHHTTHHHHHHHTT-CTTCEEEEEES---CSSSSCCHHHH
T ss_pred CCHHHHHHHHHhcCC------------CEEEEEecCcCcHHHHHHHHHHHHhcC-CCCCEEEEECC---CcCchHhhhhh
Confidence 578888888776554 222333334566788888898888754 22344455531 10011123334
Q ss_pred HHHHHHcCCCEEEEECccHHHHHHHhh
Q 011395 411 LSYCCDACIDLIGLVGDRFRAAAENMN 437 (487)
Q Consensus 411 ~~~l~~~~~d~vi~~g~~~~~i~~~~~ 437 (487)
.+.+.+.++|.++--|.++.++.+.+.
T Consensus 105 ~~~~~~~G~d~~~~~g~~~~~~~~~l~ 131 (137)
T 1ccw_A 105 EKRFKDMGYDRVYAPGTPPEVGIADLK 131 (137)
T ss_dssp HHHHHHTTCSEECCTTCCHHHHHHHHH
T ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHH
Confidence 456667789999888888777766664
No 185
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=31.90 E-value=29 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=19.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCce
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v 161 (487)
.+||+||. .||||++.+|..-+ |+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~---g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY---SAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---CEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE
Confidence 57999997 68999998887654 5444
No 186
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=31.85 E-value=1.6e+02 Score=26.39 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc
Q 011395 370 PISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (487)
Q Consensus 370 p~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~ 428 (487)
...++++++.+++..+.-..+++.||+.+.|.. ...+.+.+.+.+.+...+++.|..
T Consensus 25 ~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~l~~p~~~v~GNH 81 (274)
T 3d03_A 25 NAANADVVSQLNALRERPDAVVVSGDIVNCGRP--EEYQVARQILGSLNYPLYLIPGNH 81 (274)
T ss_dssp HHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCH--HHHHHHHHHHTTCSSCEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCH--HHHHHHHHHHHhcCCCEEEECCCC
Confidence 378888888887754234688899998765543 334566667766555566666753
No 187
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=31.72 E-value=32 Score=33.66 Aligned_cols=30 Identities=30% Similarity=0.280 Sum_probs=23.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhC-CCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESL-GVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~-g~~v 161 (487)
..+|+|+|-+ ||||+...|...+... ..++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 5689999976 5999999999998654 3444
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=31.44 E-value=28 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=18.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+|.++|- .||||+...|+.-|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 46788886 79999999999888
No 189
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=31.32 E-value=32 Score=29.10 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+..++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 346799999987 5999999999998
No 190
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.28 E-value=1.7e+02 Score=24.79 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=9.3
Q ss_pred CCCEEEEecCCCC
Q 011395 463 SNDVVLVKGSRAM 475 (487)
Q Consensus 463 ~~d~vLv~GSr~~ 475 (487)
.-|+|+..|--|.
T Consensus 72 ~~DlVittGG~g~ 84 (169)
T 1y5e_A 72 DVDVVLTNGGTGI 84 (169)
T ss_dssp TCSEEEEECCCSS
T ss_pred CCCEEEEcCCCCC
Confidence 4699999976443
No 191
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=31.18 E-value=40 Score=27.88 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=19.2
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
++|+|+|.. ||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 478888864 799999988 45566654
No 192
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=31.01 E-value=36 Score=33.98 Aligned_cols=30 Identities=37% Similarity=0.266 Sum_probs=23.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhCCCce
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESLGVNV 161 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v 161 (487)
..+|+|+|-| |||||...|...+.....++
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 5689999977 69999999999884433344
No 193
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=30.53 E-value=36 Score=37.27 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhC-----CCceE
Q 011395 131 SGVLVGVTGS---VGKSTTKSMIALALESL-----GVNVF 162 (487)
Q Consensus 131 ~~~vI~VTGT---nGKTTT~~ml~~iL~~~-----g~~v~ 162 (487)
..+.|-|+|| .|||+++.-|..+|++. |++|.
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~ 72 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLL 72 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEE
Confidence 3578899998 69999999999999888 88874
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.34 E-value=31 Score=29.60 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|+|+|. .||||.+.+|+.-|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888886 48999999999988
No 195
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=30.21 E-value=56 Score=33.82 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=24.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|.+||. .||||++..|+.-|...|.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~ 404 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVT 404 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 467889877 5799999999999866666553
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.86 E-value=34 Score=29.06 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+.|.|+|. .||||.+..|+.-|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456888886 58999999999888
No 197
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=29.33 E-value=1.6e+02 Score=24.04 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=18.6
Q ss_pred CcEEEEeCCCCh-HhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGSVGK-STTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGTnGK-TTT~~ml~~iL~~~g~~v~ 162 (487)
.+.|+|-|...| +.....+..-|++.|++++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~ 53 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVY 53 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEE
Confidence 356777787644 2334444445658898764
No 198
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.07 E-value=42 Score=29.58 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
...|.++|. .||||.+.+|+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456777776 48999999999988
No 199
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.98 E-value=33 Score=28.96 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=18.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45777876 58999999999888
No 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.68 E-value=32 Score=29.43 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=17.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|+|-+ ||||+..+|+..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678888864 7999999887653
No 201
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=28.65 E-value=40 Score=28.58 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=18.4
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+|+++|.. ||||.+.+|+.-|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468888864 7999999999877
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=28.18 E-value=33 Score=31.13 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=23.3
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..++.++| -.||||++.-|+..|. .|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~ 45 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVA 45 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEE
Confidence 44555554 6789999999999996 787874
No 203
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=28.04 E-value=3.6e+02 Score=24.86 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHH---HHHHHhhhhc-C
Q 011395 366 YNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFR---AAAENMNLIK-T 441 (487)
Q Consensus 366 ya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~---~i~~~~~~~~-~ 441 (487)
||....++..+|+.... ...+++++|+|. |. .-+.++..+.+.++..|+++..+.. .+++.+.... .
T Consensus 107 ~NTD~~G~~~~l~~~~~-~l~~k~vlVlGa----GG----~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~ 177 (283)
T 3jyo_A 107 HNTDVSGFGRGMEEGLP-NAKLDSVVQVGA----GG----VGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGR 177 (283)
T ss_dssp ECHHHHHHHHHHHHHCT-TCCCSEEEEECC----SH----HHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred ecCCHHHHHHHHHHhCc-CcCCCEEEEECC----cH----HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCC
Confidence 57777778777765321 124789999994 43 2355666677777888988887654 4555554322 1
Q ss_pred CeEEEEC--CHHHHHHHHHhhCCCCCEEEEecCCCC
Q 011395 442 DYIVVTN--DAEILSQKIVKRLKSNDVVLVKGSRAM 475 (487)
Q Consensus 442 ~~~~~~~--d~~~ai~~l~~~~~~~d~vLv~GSr~~ 475 (487)
..+...+ +.++++.. -|+|+=.-+-+|
T Consensus 178 ~~i~~~~~~~l~~~l~~-------~DiVInaTp~Gm 206 (283)
T 3jyo_A 178 EAVVGVDARGIEDVIAA-------ADGVVNATPMGM 206 (283)
T ss_dssp CCEEEECSTTHHHHHHH-------SSEEEECSSTTS
T ss_pred ceEEEcCHHHHHHHHhc-------CCEEEECCCCCC
Confidence 2333433 55544332 376665544443
No 204
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=27.97 E-value=73 Score=28.53 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=21.5
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 130 FSGVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 130 ~~~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+..+..+||+ .||||..--+..=+...|++|.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVl 60 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAI 60 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 44678899999 5565554444444446788875
No 205
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=27.60 E-value=45 Score=28.26 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=18.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777774 69999999999888
No 206
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=27.08 E-value=1.6e+02 Score=26.48 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEec
Q 011395 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
.+.+++.|||..|-+-.-.-++.-|-+.|.++...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~ 39 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFT 39 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe
Confidence 44679999999884334444444444789888643
No 207
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=27.07 E-value=49 Score=29.21 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=20.9
Q ss_pred cCCCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 128 SRFSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 128 p~~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
|..+.++|+|.|-+ ||||....|...+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34567889999987 5999998887765
No 208
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=27.07 E-value=48 Score=29.87 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|.|-| ||||...+|+.-|
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999987 6999999999877
No 209
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=26.82 E-value=1.2e+02 Score=27.45 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEec
Q 011395 130 FSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 130 ~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
.+.+++.|||..|..-=..+..+++ +.|.++...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~ 53 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVIS 53 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEE
T ss_pred CCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEe
Confidence 3467999999887555556666666 778888643
No 210
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=26.80 E-value=40 Score=28.76 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=18.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
..+|.|+|. .||||.+..|+.-|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356777775 68999999999887
No 211
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=26.61 E-value=70 Score=30.59 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee--cCCeEEEEecCCCC-HHHHH---HHHHHHHccccCCcEEEEE
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS--RSGIKIVNDAYNAN-PISTR---AAIDLLKDIACNGKRVVIL 393 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~--~~~~~ii~Dsya~n-p~s~~---~~l~~l~~~~~~~~~i~Vl 393 (487)
-.|-.+|..||+++..+ .+..|.-=+-+.++-+. +..+.||-. .... -+.+. -.++++++.. .+|+.+|+
T Consensus 18 ~La~~ia~~lg~~l~~~--~~~~F~dGE~~v~i~esvrg~dV~iiqs-~~~p~nd~lmeLl~~idA~k~as-A~rIt~Vi 93 (319)
T 3dah_A 18 ALAQEVVKILGIPLGKA--MVSRFSDGEIQVEIQENVRGKDVFVLQS-TCAPTNDNLMELMIMVDALKRAS-AGRITAAI 93 (319)
T ss_dssp HHHHHHHHHHTSCCCCE--EEEECTTSCEEEEECSCCBTCEEEEECC-CCSSHHHHHHHHHHHHHHHHHTT-BSEEEEEE
T ss_pred HHHHHHHHHhCCceeee--EEEECCCCCEEEEECCCcCCCeEEEEcc-CCCCCcHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 35666777888875543 34566543333333222 123333434 3221 13333 3444555544 46788887
Q ss_pred cCCCCCCc-------ccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHh
Q 011395 394 GDMLELGS-------TERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVK 459 (487)
Q Consensus 394 g~m~e~G~-------~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~ 459 (487)
--+.-.-. +..---+-+++.+...++|+|+++.-....+..- ....+..........+++.+
T Consensus 94 PY~~YaRQDr~~~~~r~pisak~vA~ll~~~G~d~vit~DlH~~qiqgf----F~ipvd~l~a~p~l~~~i~~ 162 (319)
T 3dah_A 94 PYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGF----FDIPVDNIYATPILLGDLRK 162 (319)
T ss_dssp SSCTTTTCCSCCTTCCCCCHHHHHHHHHHHHTCCEEEEESCSCGGGGGG----CSSCEEEECCHHHHHHHHHT
T ss_pred cCccccccccccCCCCCCccHHHHHHHHHhcCCCEEEEEECCChHHhhh----cCCceEecccHHHHHHHHHH
Confidence 54321100 0001234677888878899999987665332211 12234444455555555554
No 212
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=26.60 E-value=42 Score=34.96 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=24.7
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVT--GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VT--GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+++.++ |-.||||++..++..|.+.|++|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVL 40 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVL 40 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEE
Confidence 3455454 558999999999999988999985
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.56 E-value=32 Score=30.60 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=19.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||+..+|..++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999965 7999999999877
No 214
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.51 E-value=1.1e+02 Score=28.65 Aligned_cols=46 Identities=17% Similarity=0.022 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeCCC--ChHhHHHHHHHHHHhCCCceE
Q 011395 117 SLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 117 aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~~~g~~v~ 162 (487)
++..+-.....|......+.++|-. ||||+...++..+...+.++.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 3443333434433234456677754 699999999998866555553
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.77 E-value=1e+02 Score=27.51 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhhcC-------CCCcEEEEeCC--CChHhHHHHHHHHH
Q 011395 113 NTLNSLVNMACYARNSR-------FSGVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 113 d~~~aL~~la~~~~~p~-------~~~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
+..+.+..+..+...|. ...+-|.++|- .|||+++..++.-+
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 13 EAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp HHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 66677777766555433 12345778886 57999999998877
No 216
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=25.74 E-value=3e+02 Score=25.82 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcC--CCEEEEECccH-----
Q 011395 357 SGIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDAC--IDLIGLVGDRF----- 429 (487)
Q Consensus 357 ~~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~--~d~vi~~g~~~----- 429 (487)
.+..+||- -+--...+....+-+.+ .+..++++| +..|.++--.+.... .+.++++....
T Consensus 87 rgl~iiDA-TCP~V~Kvh~~v~~~~~---~Gy~iiiiG---------~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~l 153 (297)
T 3dnf_A 87 KGLKVIDA-TCPYVKAVHEAVCQLTR---EGYFVVLVG---------EKNHPEVIGTLGYLRACNGKGIVVETLEDIGEA 153 (297)
T ss_dssp TTCEEEEC-CCHHHHHHHHHHHHHHH---TTCEEEEES---------CTTCHHHHHHHHHHHHTTCCEEEESSGGGGGGG
T ss_pred CCCEEEeC-CCcchHHHHHHHHHHHh---CCCEEEEEe---------cCCCceEEeeccccccCCCcEEEEcCHHHHHhc
Q ss_pred -------------------HHHHHHhhhhcCCeEEEEC-------CHHHHHHHHHhhCCCCCEEEEecC----CCCcHHH
Q 011395 430 -------------------RAAAENMNLIKTDYIVVTN-------DAEILSQKIVKRLKSNDVVLVKGS----RAMQMEK 479 (487)
Q Consensus 430 -------------------~~i~~~~~~~~~~~~~~~~-------d~~~ai~~l~~~~~~~d~vLv~GS----r~~~~e~ 479 (487)
..+.+.++...+ .+..++ +|++|+..+.+.. |++||-|+ ++.+|-+
T Consensus 154 ~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p-~~~~~~tIC~AT~~RQ~av~~la~~~---D~miVVGg~nSSNT~rL~e 229 (297)
T 3dnf_A 154 LKHERVGIVAQTTQNEEFFKEVVGEIALWVK-EVKVINTICNATSLRQESVKKLAPEV---DVMIIIGGKNSGNTRRLYY 229 (297)
T ss_dssp GGCSEEEEEECTTCCHHHHHHHHHHHHHHSS-EEEEECCCCSHHHHHHHHHHHHGGGS---SEEEEESCTTCHHHHHHHH
T ss_pred CCCCcEEEEEecCCcHHHHHHHHHHHHHhCC-CCCCCCCccHHHHHHHHHHHHHHhhC---CEEEEECCCCCchhHHHHH
Q ss_pred HHHHH
Q 011395 480 VVDVI 484 (487)
Q Consensus 480 ~~~~l 484 (487)
+.+..
T Consensus 230 ia~~~ 234 (297)
T 3dnf_A 230 ISKEL 234 (297)
T ss_dssp HHHHH
T ss_pred HHHhc
No 217
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=25.58 E-value=43 Score=29.94 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
.+..+++|.|-| ||||...+|...+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 346799999988 6999999998877
No 218
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=25.58 E-value=1.7e+02 Score=22.90 Aligned_cols=8 Identities=25% Similarity=0.659 Sum_probs=5.4
Q ss_pred cEEEEEcC
Q 011395 388 KRVVILGD 395 (487)
Q Consensus 388 ~~i~Vlg~ 395 (487)
-+++|+|+
T Consensus 4 mkiaVIgD 11 (109)
T 2d00_A 4 VRMAVIAD 11 (109)
T ss_dssp CCEEEEEC
T ss_pred cEEEEEeC
Confidence 35788874
No 219
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=25.36 E-value=60 Score=33.31 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHh
Q 011395 131 SGVLVGVTGS--VGKSTTKSMIALALES 156 (487)
Q Consensus 131 ~~~vI~VTGT--nGKTTT~~ml~~iL~~ 156 (487)
...+|.+||- .||||+...|+.-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4568999995 6999999999999943
No 220
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=24.99 E-value=45 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+++|-. ||||+..+|+..|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578888875 7999999999988
No 221
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=24.88 E-value=39 Score=35.40 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=16.8
Q ss_pred cEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEE
Q 011395 388 KRVVILGDMLELGSTERESHEKILSYCCDACIDLIGL 424 (487)
Q Consensus 388 ~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~ 424 (487)
+-|+|+-- +......+.+.+.++++...+.
T Consensus 348 ~diaVL~r-------~~~~~~~l~~~l~~~~Ip~~~~ 377 (647)
T 3lfu_A 348 AECAILYR-------SNAQSRVLEEALLQASMPYRIY 377 (647)
T ss_dssp GGEEEEES-------SGGGHHHHHHHHHHTTCCEEES
T ss_pred cCEEEEEe-------CchhHHHHHHHHHHCCCCEEEe
Confidence 45777742 1223455666777776665554
No 222
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=24.84 E-value=1.9e+02 Score=23.58 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCh-HhHHHHHHHHHHhCCCceEecCCC--CCCcchhhh--HhhcCCCCCcEEEEec
Q 011395 132 GVLVGVTGSVGK-STTKSMIALALESLGVNVFQSYGN--WNNRVGVAL--SLIGIDRAVDIAVLEM 192 (487)
Q Consensus 132 ~~vI~VTGTnGK-TTT~~ml~~iL~~~g~~v~~t~g~--~n~~~g~p~--~l~~~~~~~~~~V~E~ 192 (487)
.+.|+|-|-..| .+..+.+..-|++.|++++...-. ...-.|.+. ++.+++...|.+|+=+
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~v 78 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR 78 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECS
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEe
Confidence 456777777644 233344444465889986531111 111123322 3444455566666655
No 223
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=24.79 E-value=1.2e+02 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 116 NSLVNMACYARNSRFSGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 116 ~aL~~la~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
+.+..+...... ....+.+.|+|-. ||||+...++.-+.
T Consensus 30 ~~~~~l~~~l~~-~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 30 HVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHH-TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555554444 3333578888864 79999999988883
No 224
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=24.24 E-value=85 Score=28.36 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCCcEEEEeCCCC-hHhHHHHHHHHHHhCCCceEecC
Q 011395 129 RFSGVLVGVTGSVG-KSTTKSMIALALESLGVNVFQSY 165 (487)
Q Consensus 129 ~~~~~vI~VTGTnG-KTTT~~ml~~iL~~~g~~v~~t~ 165 (487)
..+.+++.|||..| ..-=..+..+++ +.|.++....
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~-~~G~~v~~~~ 53 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCA-EMGAAVAITY 53 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHH-HTSCEEEECB
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHH-HCCCeEEEEe
Confidence 34568999999885 233334445555 7888886543
No 225
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=24.04 E-value=75 Score=32.63 Aligned_cols=31 Identities=42% Similarity=0.489 Sum_probs=27.5
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTG----SVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTG----TnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.+.|-||| +-||.-|++-|..+|++.|++|.
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~ 37 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVT 37 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 46788888 45999999999999999999984
No 226
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=23.99 E-value=2.4e+02 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.128 Sum_probs=16.5
Q ss_pred cEEEEEcCCCCCCcccHHHHHHHHHHHHHcCC
Q 011395 388 KRVVILGDMLELGSTERESHEKILSYCCDACI 419 (487)
Q Consensus 388 ~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~ 419 (487)
.++.|+..--|.|...+.....+.+.+.+.++
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~ 42 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGH 42 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCC
Confidence 45665532224555444444556666665544
No 227
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.67 E-value=72 Score=29.56 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhC-CCce
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALESL-GVNV 161 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~~~-g~~v 161 (487)
...+++|+|-+ ||||....|+..+... |.++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v 67 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 35689999877 8999999999888544 4444
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=23.62 E-value=37 Score=34.86 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=18.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
...|+|+|-+ |||||..+|..++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3457888765 8999999998888
No 229
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=23.55 E-value=48 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhC
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALESL 157 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~~~ 157 (487)
..+++|.|-| ||||...+|..+ +-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 5689999998 699999999988 643
No 230
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=23.45 E-value=2.5e+02 Score=25.51 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEee----cCCeEEEEecCCCCHHHHHHHHHHH
Q 011395 319 ACAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVS----RSGIKIVNDAYNANPISTRAAIDLL 380 (487)
Q Consensus 319 alaAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~----~~~~~ii~Dsya~np~s~~~~l~~l 380 (487)
+-.||.-|...++|.+.|.++++.-.+-..-++.+.. ++|+-||++|.-.|..-..+-++.+
T Consensus 47 Lr~aI~kAk~~nmPkd~IerAIkk~~g~~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~ 112 (240)
T 1mw7_A 47 LRTAILNAKAQNMPKDNIDAAIKRASSKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSY 112 (240)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSTTCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCCCCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHH
Confidence 5677888899999999999999887653112333322 5899999999888877666666554
No 231
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=23.44 E-value=27 Score=34.28 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCChHhHHHHHHHHHHhCCCceE
Q 011395 139 GSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 139 GTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
|-.||||++..++..|.+.|++|.
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vl 34 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVL 34 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeE
Confidence 446799999999999988999984
No 232
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=23.22 E-value=54 Score=29.71 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=22.8
Q ss_pred EEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 135 VGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 135 I~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
++=-|=.||||++--++..|.+.|++|.
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4556778999998888888878999874
No 233
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=22.97 E-value=21 Score=36.14 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=21.9
Q ss_pred CCCCCcccccccCCcceeecCCCCCccCHHHHHHHhCCe
Q 011395 1 MASNIYPHTLACTSKTTFRCPSNSPIWTINEIAESVNGK 39 (487)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 39 (487)
||+|||||||.---.-..+.=. .+-+++.+|.+.+.|.
T Consensus 148 mATnIPpHNl~EVida~~~li~-~~~~~~~eLm~~i~gP 185 (500)
T 3lpx_A 148 MATNIPPHNLTEVINACLALID-NSELTFEEILEHIPGP 185 (500)
T ss_dssp -CCBCCCCCHHHHHHHHHHHHH-CTTCCHHHHHHHCCSC
T ss_pred eeccCCCCCHHHHHHHHHHHhc-CCCCCHHHHHhcCCCC
Confidence 8999999997432222211111 1235788888877653
No 234
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.89 E-value=46 Score=30.75 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=20.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|..++
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 5799999999 7999999988777
No 235
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=22.64 E-value=57 Score=30.99 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhCCCceEec
Q 011395 132 GVLVGVTG--SVGKSTTKSMIALALESLGVNVFQS 164 (487)
Q Consensus 132 ~~vI~VTG--TnGKTTT~~ml~~iL~~~g~~v~~t 164 (487)
..+|.+-| ..||||+...|.+-|...|++|..+
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 44666666 6899999999999998889888754
No 236
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=22.53 E-value=3.9e+02 Score=24.83 Aligned_cols=148 Identities=10% Similarity=-0.043 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCCCceeEEeecCCeEEEEecCCCCHHHHHHHHH---HHHccccCCcEEEEEcCC
Q 011395 320 CAAAAVATLFGVSLAQVGISLSNFSPVQMRSELLVSRSGIKIVNDAYNANPISTRAAID---LLKDIACNGKRVVILGDM 396 (487)
Q Consensus 320 laAia~a~~lg~~~~~i~~~L~~~~~~~gR~e~~~~~~~~~ii~Dsya~np~s~~~~l~---~l~~~~~~~~~i~Vlg~m 396 (487)
-.|-.+|..||+++..+ .+..|..=+-+.++-+.+..+.||--.+...-+.+..+|- ++++.. .+|+.+|+--+
T Consensus 11 ~la~~ia~~lg~~l~~~--~~~~F~dGE~~v~i~e~g~dV~iiqs~~~p~nd~lmeLl~~ida~k~~~-A~~it~ViPY~ 87 (286)
T 3lrt_A 11 KLAARIAEELKTEPVMP--DERRFPDGELYLRYDEDLTGHNIFIIGNTHSDAEVMEMILTLSAIQDYR-TKSVNIIAPYY 87 (286)
T ss_dssp HHHHHHHHHTTSCEECC--EEEECTTSCEEEECCSCCTTSEEEEECCCCSHHHHHHHHHHHHHGGGSC-CSEEEEEESSC
T ss_pred HHHHHHHHHhCCCeeee--EEEECCCCCEEEEEcCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcC-CCEEEEEecCc
Confidence 45667788899886533 3566764333444333334555565533222244444444 444433 46778887543
Q ss_pred CCCCcc------cHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHHHHHhhCCCCCEEEEe
Q 011395 397 LELGST------ERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQKIVKRLKSNDVVLVK 470 (487)
Q Consensus 397 ~e~G~~------~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~ 470 (487)
.-.-.+ ..---+-+++.+... +|+|+++.-....+..-+ ...+....-.....+++.+ .+.++|+--
T Consensus 88 ~YaRQDr~~~~~e~isak~vA~ll~~~-~d~vit~DlH~~~iq~ff----~~pvd~l~~~~~la~~i~~--~~~~vVV~p 160 (286)
T 3lrt_A 88 GYARQHQRYKNGEPISSQILTEIYSSY-SNSIATVDIHDEKTLSYS----KVKFSDLHANDAIVRYYKN--VDVDYVVSP 160 (286)
T ss_dssp TTTTCCSCSSTTCCCHHHHHHHHHHHT-CSEEEEESCSCGGGGGGC----SSEEEEECCHHHHHHHHTT--SCCSEEEES
T ss_pred ccccCcccCCCCCcccHHHHHHHHHHH-hCeEEEecCChHHHhhhc----CCcEEEeecHHHHHHHHHh--cCCCEEEEE
Confidence 211000 011234578888888 999999987765544222 3345555556666666655 234544443
Q ss_pred cCCCCcH
Q 011395 471 GSRAMQM 477 (487)
Q Consensus 471 GSr~~~~ 477 (487)
-.+|..+
T Consensus 161 d~Gg~~~ 167 (286)
T 3lrt_A 161 DDGGLAR 167 (286)
T ss_dssp SSSSHHH
T ss_pred CCCccHH
Confidence 4444433
No 237
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.43 E-value=3.3e+02 Score=23.20 Aligned_cols=66 Identities=9% Similarity=0.198 Sum_probs=43.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc
Q 011395 359 IKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR 428 (487)
Q Consensus 359 ~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~ 428 (487)
+.+|-|... +...++++++.+.+.. ...+++.||+.+.|... +...++.+.+.+.+...+++.|..
T Consensus 8 i~~iSD~H~-~~~~~~~~~~~~~~~~--~D~vi~~GDl~~~~~~~-~~~~~~~~~l~~~~~pv~~v~GNH 73 (228)
T 1uf3_A 8 ILATSNPMG-DLEALEKFVKLAPDTG--ADAIALIGNLMPKAAKS-RDYAAFFRILSEAHLPTAYVPGPQ 73 (228)
T ss_dssp EEEEECCTT-CHHHHHHHHTHHHHHT--CSEEEEESCSSCTTCCH-HHHHHHHHHHGGGCSCEEEECCTT
T ss_pred EEEEeeccC-CHHHHHHHHHHHhhcC--CCEEEECCCCCCCCCCH-HHHHHHHHHHHhcCCcEEEECCCC
Confidence 568889653 6778888887776533 35899999987666333 333456666666545566666753
No 238
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=22.25 E-value=2.2e+02 Score=26.94 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHcccc--CCcEEEEEcCCCCCCcccHHHHHHHHHHHHHc-CCCEEEEECcc---HHHHHHHhhhhc
Q 011395 367 NANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDA-CIDLIGLVGDR---FRAAAENMNLIK 440 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~--~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~-~~d~vi~~g~~---~~~i~~~~~~~~ 440 (487)
..+|.-.-+=+-++++.++ .+.+++++|+ +..+.-. ..+...+..+ +++..++..+. +..+.+.++..+
T Consensus 129 ~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD----~~~~rva-~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g 203 (306)
T 4ekn_B 129 NQHPTQTLLDLYTIMREIGRIDGIKIAFVGD----LKYGRTV-HSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKN 203 (306)
T ss_dssp SCCHHHHHHHHHHHHHHHSCSTTCEEEEESC----TTTCHHH-HHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHHHhCCcCCCEEEEEcC----CCCCcHH-HHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcC
Confidence 3567665554555555431 4779999997 3223323 3455667777 76644444332 345655554433
Q ss_pred CCeEEEECCHHHHHHHHHhhCCCCCEEEEe
Q 011395 441 TDYIVVTNDAEILSQKIVKRLKSNDVVLVK 470 (487)
Q Consensus 441 ~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~ 470 (487)
..+..+.|.++|++. -|+|...
T Consensus 204 -~~~~~~~d~~eav~~-------aDvvy~~ 225 (306)
T 4ekn_B 204 -IKFYEKESLDDLDDD-------IDVLYVT 225 (306)
T ss_dssp -CCEEEESCGGGCCTT-------CSEEEEC
T ss_pred -CEEEEEcCHHHHhcC-------CCEEEeC
Confidence 245566777665432 3666654
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=22.18 E-value=65 Score=29.20 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+|+|+|-. ||||++.+|+.-|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999965 8999999999888
No 240
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=21.93 E-value=62 Score=28.09 Aligned_cols=57 Identities=23% Similarity=0.410 Sum_probs=33.8
Q ss_pred CCCCCceeEEeecC------CeEEEEecCCCCHHHHHHHHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHc
Q 011395 344 SPVQMRSELLVSRS------GIKIVNDAYNANPISTRAAIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDA 417 (487)
Q Consensus 344 ~~~~gR~e~~~~~~------~~~ii~Dsya~np~s~~~~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~ 417 (487)
+|.|+|..++-+.+ +..++ .++..+++.+++ .+.+.|+|+ .++.+.+.+.
T Consensus 53 ~plp~R~niVlSr~~~~~~~~v~v~--------~sl~eal~~l~~----~~~i~viGG------------~~iy~~~l~l 108 (178)
T 3tq8_A 53 KPLPHRRNIVITQQKNLIIEGCDIF--------YSLDDALSALTK----EPEVIIIGG------------ARIFKEALPK 108 (178)
T ss_dssp SCCTTSEEEEECSCTTCCCTTSEEE--------SSHHHHHHHTTT----CSEEEEEEC------------HHHHHHHGGG
T ss_pred hccCCCeEEEEcCCCCcCCCCeEEE--------CCHHHHHHHhhC----CCCEEEECC------------HHHHHHHHHh
Confidence 47899988765522 23322 245666666653 467888884 2333333345
Q ss_pred CCCEEEEE
Q 011395 418 CIDLIGLV 425 (487)
Q Consensus 418 ~~d~vi~~ 425 (487)
+|.++++
T Consensus 109 -~Del~lT 115 (178)
T 3tq8_A 109 -ADKMILT 115 (178)
T ss_dssp -CSEEEEE
T ss_pred -CCEEEEE
Confidence 8999886
No 241
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.91 E-value=1.7e+02 Score=23.76 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=18.4
Q ss_pred CCCCcEEEEeCCCChH-hHH-HHHHHHHHhCCCceE
Q 011395 129 RFSGVLVGVTGSVGKS-TTK-SMIALALESLGVNVF 162 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKT-TT~-~ml~~iL~~~g~~v~ 162 (487)
.++.+.|+|-|...|. ..- .++..+ .+.|++++
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~ 45 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVL 45 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEE
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEE
Confidence 3446678888876442 233 444444 47898865
No 242
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=21.82 E-value=2e+02 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=31.3
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHH
Q 011395 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALE 155 (487)
Q Consensus 100 ~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~ 155 (487)
++|++.|+ +- .+|+..... ..+.-+++|| ..|.+-....+..+..
T Consensus 93 ~VP~~~v~-----sk----~eLG~a~Gk-~~~vs~vaI~-~~~~s~i~~~~~~~~~ 137 (144)
T 2jnb_A 93 NVPYVFVR-----SK----QALGRACGV-SRPVIACSVT-IKEGSQLKQQIQSIQQ 137 (144)
T ss_dssp CCCCEEES-----CS----HHHHHHHTC-SSCCSEEEEE-CCTTCTTHHHHHHHHH
T ss_pred CCCEEEEC-----CH----HHHHHHhCC-CCceEEEEEE-eCCcHHHHHHHHHHHH
Confidence 78999898 54 356776665 4445579999 5677777777777663
No 243
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=21.81 E-value=38 Score=32.22 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=18.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
++++++|||-+ ||||....|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999987 5999877776653
No 244
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=21.63 E-value=1.9e+02 Score=23.16 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=40.7
Q ss_pred HHHHHHccccCCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECccHHHHHHHhhhhcCCeEEEECCHHHHHH
Q 011395 376 AIDLLKDIACNGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDRFRAAAENMNLIKTDYIVVTNDAEILSQ 455 (487)
Q Consensus 376 ~l~~l~~~~~~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~~~~i~~~~~~~~~~~~~~~~d~~~ai~ 455 (487)
+++.+... .+++++|+|. |.-. ..+++.+...+.. |++++.++....+..... ...+..+++.+++++
T Consensus 12 a~~~~~~~--~~~~v~iiG~----G~iG----~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~-~~~~~~~~~~~~~~~ 79 (144)
T 3oj0_A 12 VYDIVRKN--GGNKILLVGN----GMLA----SEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKY-EYEYVLINDIDSLIK 79 (144)
T ss_dssp HHHHHHHH--CCCEEEEECC----SHHH----HHHGGGCCTTTCE-EEEEESCHHHHHHHHHHH-TCEEEECSCHHHHHH
T ss_pred HHHHHHhc--cCCEEEEECC----CHHH----HHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHh-CCceEeecCHHHHhc
Confidence 34444443 3789999994 5322 3444555555565 777777655433222222 123445667766543
Q ss_pred HHHhhCCCCCEEEEe
Q 011395 456 KIVKRLKSNDVVLVK 470 (487)
Q Consensus 456 ~l~~~~~~~d~vLv~ 470 (487)
.-|+|+..
T Consensus 80 -------~~Divi~a 87 (144)
T 3oj0_A 80 -------NNDVIITA 87 (144)
T ss_dssp -------TCSEEEEC
T ss_pred -------CCCEEEEe
Confidence 23666655
No 245
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.58 E-value=42 Score=42.38 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=43.7
Q ss_pred CccEEEEcCCCCccHHHHHHHHHHHHhhcCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceE
Q 011395 100 DKGFVQVEGNGNVNTLNSLVNMACYARNSRFSGVLVGVTGSVGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 100 ~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~ 162 (487)
.++++.-+ |..+=+.++++..++|.-..=.|||.|| ||+|.+++.++|. |+++.
T Consensus 1622 ~m~LVlF~-----daleHv~RI~RIL~qp~GhaLLVGvgGS-GkqSLtrLAa~i~---~~~vf 1675 (3245)
T 3vkg_A 1622 DVPLVLFN-----EVLDHILRIDRVFRQPQGHALLIGVSGG-GKSVLSRFVAWMN---GLSIY 1675 (3245)
T ss_dssp --CCCCCH-----HHHHHHHHHHHHHTSTTCCEEEEESTTS-SHHHHHHHHHHHT---TCEEE
T ss_pred CceEEeHH-----HHHHHHHHHHHHHccCCCCeEEecCCCC-cHHHHHHHHHHHh---CCeeE
Confidence 34556677 8888888888888888888889999997 9999999999997 77764
No 246
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=21.51 E-value=1e+02 Score=29.29 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
....+++.|-+ ||||+..+++..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34668889987 6999999999998
No 247
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=21.46 E-value=47 Score=29.14 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=18.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 011395 133 VLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.+|+|+|. .||||.+.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899985 59999999998877
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=21.44 E-value=43 Score=30.02 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|.-++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999998 7999999888776
No 249
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=21.42 E-value=73 Score=27.89 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
...+..|+|-| ||||....|..+|-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34688899987 89999999999993
No 250
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=21.37 E-value=73 Score=28.56 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=22.9
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..+|+|+|. .||||+...|+.-| |+.+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~~~ 43 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIHFY 43 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCEEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCcEE
Confidence 468999995 57999999999999 56543
No 251
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=21.21 E-value=22 Score=35.94 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCCCCccccccc---CCcceeecCCCCCccCHHHHHHHhCC
Q 011395 1 MASNIYPHTLAC---TSKTTFRCPSNSPIWTINEIAESVNG 38 (487)
Q Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~ 38 (487)
||+|||||||.- .-...++-|....+.++.+|..++.|
T Consensus 155 mAT~IPphNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~g 195 (470)
T 3ilw_A 155 MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKG 195 (470)
T ss_dssp CSCEECCCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCS
T ss_pred eecCCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHhhcccC
Confidence 899999999743 22333443332222267777777665
No 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.14 E-value=53 Score=30.26 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|.|-| ||||...+|..+++
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999 69999999888773
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.10 E-value=30 Score=32.07 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.1
Q ss_pred CcEEEEeCCCC--hHhHHHHHHHHHHh
Q 011395 132 GVLVGVTGSVG--KSTTKSMIALALES 156 (487)
Q Consensus 132 ~~vI~VTGTnG--KTTT~~ml~~iL~~ 156 (487)
..+++|.|-|| |||...+|.-+++.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 57899999985 99999999888743
No 254
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=21.07 E-value=3.1e+02 Score=24.94 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCCCcEEEEeCCCChHhHHHHHHHHHHhCCCceEecCCCCCCcchhhhHhhcCCCCCcEEEEeccCCCcchHHhhcccc-
Q 011395 129 RFSGVLVGVTGSVGKSTTKSMIALALESLGVNVFQSYGNWNNRVGVALSLIGIDRAVDIAVLEMGMSGKGEILELARMA- 207 (487)
Q Consensus 129 ~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~v~~t~g~~n~~~g~p~~l~~~~~~~~~~V~E~g~~~~g~i~~~~~~~- 207 (487)
..+.+++.|||.+| -.-.-++..|-+.|.+|.....+. ........++ +.++.+++++......+.++..-+
T Consensus 13 ~l~gk~vlVTGas~--gIG~~~a~~L~~~G~~V~~~~r~~---~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 13 SFAQRTVVITGANS--GLGAVTARELARRGATVIMAVRDT---RKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEEESCH---HHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred CCCCCEEEEeCCCC--hHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 44568999999886 333444444447888886533221 1111111112 345667777767666666554433
Q ss_pred CCcEEEEcCCC
Q 011395 208 RPEIRVVLNVG 218 (487)
Q Consensus 208 ~pdvaViTNI~ 218 (487)
++|+ +|-|-+
T Consensus 86 ~iD~-lv~nAg 95 (291)
T 3rd5_A 86 GADV-LINNAG 95 (291)
T ss_dssp CEEE-EEECCC
T ss_pred CCCE-EEECCc
Confidence 3454 445554
No 255
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.04 E-value=31 Score=31.45 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
..+++|.|-| ||||...+|.-+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999998 69999999988874
No 256
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.97 E-value=63 Score=29.81 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|.-++
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999998 7999998888764
No 257
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.92 E-value=60 Score=29.59 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALA 153 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~i 153 (487)
..+++|.|-| ||||...+|..+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 5689999998 799998888776
No 258
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=20.71 E-value=94 Score=29.43 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
+..+++|.|-| ||||...+|..++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 46799999976 5999999999999
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=20.69 E-value=57 Score=28.71 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhCCCceE
Q 011395 133 VLVGVTGS--VGKSTTKSMIALALESLGVNVF 162 (487)
Q Consensus 133 ~vI~VTGT--nGKTTT~~ml~~iL~~~g~~v~ 162 (487)
..|.++|. .||||.+.+|+.-| ++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~~~~i 34 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---GLAHL 34 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CceEE
Confidence 45666664 69999999999988 45543
No 260
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.65 E-value=1.1e+02 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhcC--CeEEEECCHHHHHHHHHh-hC-CCCCEEEEecCCCC
Q 011395 429 FRAAAENMNLIKT--DYIVVTNDAEILSQKIVK-RL-KSNDVVLVKGSRAM 475 (487)
Q Consensus 429 ~~~i~~~~~~~~~--~~~~~~~d~~~ai~~l~~-~~-~~~d~vLv~GSr~~ 475 (487)
...+.+.+++.+. .....++|- +++..++. .+ ..-|+|+..|--+.
T Consensus 29 ~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 29 GPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp HHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3445555555441 122344444 55544443 33 25799999976444
No 261
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.60 E-value=43 Score=29.96 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=18.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHH
Q 011395 130 FSGVLVGVTGSV--GKSTTKSMIALA 153 (487)
Q Consensus 130 ~~~~vI~VTGTn--GKTTT~~ml~~i 153 (487)
.+..+|+|.|-+ ||||...+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 346789999987 699988887665
No 262
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.54 E-value=54 Score=30.24 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|.-++
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5689999998 7999999887776
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=20.51 E-value=63 Score=29.30 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALE 155 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~ 155 (487)
.+++|.|-| ||||...+|+-+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999998 79999999988873
No 264
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=20.50 E-value=61 Score=32.99 Aligned_cols=28 Identities=29% Similarity=0.196 Sum_probs=23.2
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhCCCc
Q 011395 133 VLVGVTGSV--GKSTTKSMIALALESLGVN 160 (487)
Q Consensus 133 ~vI~VTGTn--GKTTT~~ml~~iL~~~g~~ 160 (487)
.+++|.|-| ||||+..+|.-+++.....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 689999998 7999999999999544333
No 265
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=20.42 E-value=23 Score=36.09 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=9.9
Q ss_pred CCCCCcccccc
Q 011395 1 MASNIYPHTLA 11 (487)
Q Consensus 1 ~~~~~~~~~~~ 11 (487)
||+|||||||.
T Consensus 174 mAT~IPphNl~ 184 (496)
T 2nov_A 174 YATDIPPHNLA 184 (496)
T ss_dssp CCCEECCCCHH
T ss_pred cccCCCCCCHH
Confidence 89999999974
No 266
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=20.34 E-value=68 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 011395 134 LVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 134 vI~VTGT--nGKTTT~~ml~~iL 154 (487)
.|+|||- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3677774 58999999998877
No 267
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=20.29 E-value=77 Score=28.18 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 011395 132 GVLVGVTGS--VGKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGT--nGKTTT~~ml~~iL 154 (487)
...|.++|. .||||.+.+|+.-|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456777776 68999999999988
No 268
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=20.27 E-value=65 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=15.3
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHH
Q 011395 131 SGVLVGVTGSVGKSTTKSMIALAL 154 (487)
Q Consensus 131 ~~~vI~VTGTnGKTTT~~ml~~iL 154 (487)
++-+.|=+|| |||+++..++...
T Consensus 29 ~vll~G~~Gt-GKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGS-PFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTC-CHHHHHGGGCCTT
T ss_pred cEEEECCCCc-cHHHHHHHHHHhC
Confidence 3334555554 8999888877655
No 269
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=20.23 E-value=2.4e+02 Score=26.67 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=39.7
Q ss_pred hHHhhhcCCceEEEeccccCCC----------CccEEEEcCCCCccHHHHHHHHHHHHhhcCC-------------CCcE
Q 011395 78 ISPELYGKGCVGVIGNQVCNNW----------DKGFVQVEGNGNVNTLNSLVNMACYARNSRF-------------SGVL 134 (487)
Q Consensus 78 ~~~A~~~~Ga~~~v~~~~~~~~----------~~~~i~V~~~~~~d~~~aL~~la~~~~~p~~-------------~~~v 134 (487)
++..+. ..--++|..+....+ ++|++.++ ..+.+.+..+..|... .+ ....
T Consensus 73 ler~l~-~~~P~IIltrg~~~peelie~A~~~~IPVL~T~----~~ts~~~~~l~~~l~~-~~~~~~~~H~~~v~~~g~~ 146 (314)
T 1ko7_A 73 MRKLCR-PETPAIIVTRDLEPPEELIEAAKEHETPLITSK----IATTQLMSRLTTFLEH-ELARTTSLHGVLVDVYGVG 146 (314)
T ss_dssp HHHHCC-TTCCCEEECTTCCCCHHHHHHHHHTTCCEEECC----SCHHHHHHHHHHHHHH-HTCEEEEEESEEEEETTEE
T ss_pred HHHHhc-CCCCEEEEeCCCCCCHHHHHHHHHCCCeEEEEC----CchhHHHHHHHHHHHH-hhccceeeeEEEEEECCEE
Confidence 334444 455677777653322 78988776 2466666666665443 22 1456
Q ss_pred EEEeCCC--ChHhHHHHH
Q 011395 135 VGVTGSV--GKSTTKSMI 150 (487)
Q Consensus 135 I~VTGTn--GKTTT~~ml 150 (487)
|.++|.. ||||++..+
T Consensus 147 vl~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 147 VLITGDSGIGKSETALEL 164 (314)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 8888876 577765544
No 270
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=20.13 E-value=4.5e+02 Score=24.70 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHcccc--CCcEEEEEcCCCCCCcccHHHHHHHHHHHHHcCCCEEEEECcc----HHHHHHHhhhhc
Q 011395 367 NANPISTRAAIDLLKDIAC--NGKRVVILGDMLELGSTERESHEKILSYCCDACIDLIGLVGDR----FRAAAENMNLIK 440 (487)
Q Consensus 367 a~np~s~~~~l~~l~~~~~--~~~~i~Vlg~m~e~G~~~~~~~~~~~~~l~~~~~d~vi~~g~~----~~~i~~~~~~~~ 440 (487)
..+|.-.-+=+-++++.+. .+.+++++|+ +..+.- -..+...+..++++ |.++++. +.++.+.+++.+
T Consensus 133 ~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD----~~~~rv-a~Sl~~~~~~~G~~-v~~~~P~~~~~~~~~~~~~~~~g 206 (308)
T 1ml4_A 133 NQHPTQTLLDLYTIKKEFGRIDGLKIGLLGD----LKYGRT-VHSLAEALTFYDVE-LYLISPELLRMPRHIVEELREKG 206 (308)
T ss_dssp SCCHHHHHHHHHHHHHHSSCSSSEEEEEESC----TTTCHH-HHHHHHHGGGSCEE-EEEECCGGGCCCHHHHHHHHHTT
T ss_pred ccCcHHHHHHHHHHHHHhCCCCCeEEEEeCC----CCcCch-HHHHHHHHHHCCCE-EEEECCccccCCHHHHHHHHHcC
Confidence 3467766555556665542 3578999986 332333 34566677778765 4444442 234555554443
Q ss_pred CCeEEEECCHHHHHHHHHhhCCCCCEEEEe
Q 011395 441 TDYIVVTNDAEILSQKIVKRLKSNDVVLVK 470 (487)
Q Consensus 441 ~~~~~~~~d~~~ai~~l~~~~~~~d~vLv~ 470 (487)
..+....|.++|++.+ |+|...
T Consensus 207 -~~~~~~~d~~eav~~a-------Dvvyt~ 228 (308)
T 1ml4_A 207 -MKVVETTTLEDVIGKL-------DVLYVT 228 (308)
T ss_dssp -CCEEEESCTHHHHTTC-------SEEEEC
T ss_pred -CeEEEEcCHHHHhcCC-------CEEEEC
Confidence 2466778888876543 777665
No 271
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.11 E-value=54 Score=29.69 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|.-++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999998 6999998888777
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.09 E-value=58 Score=29.94 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 011395 132 GVLVGVTGSV--GKSTTKSMIALAL 154 (487)
Q Consensus 132 ~~vI~VTGTn--GKTTT~~ml~~iL 154 (487)
..+++|.|-| ||||...+|.-++
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5799999998 7999999888777
Done!