BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011396
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 516 bits (1330), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/474 (55%), Positives = 322/474 (67%), Gaps = 9/474 (1%)
Query: 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSI 72
HVA++P+PG+GHLIP VE AKRLVH H VT I G G + QR VL+SLP+SI
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA----GEGPPSKAQRTVLDSLPSSI 63
Query: 73 STIFLPPVSFDDLPDDVRMEXXXXXXXXXXXXXXXXXXKVLAESTRL-VALVVDIFGSAA 131
S++FLPPV DL R+E E RL ALVVD+FG+ A
Sbjct: 64 SSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDA 123
Query: 132 FDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCEYRDVPEPVQLPGCVPINGRDFA 191
FDVA EF VP YIF+ TTA VLS HLP+LD SCE+R++ EP+ LPGCVP+ G+DF
Sbjct: 124 FDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKDFL 183
Query: 192 DPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVYPVGP 251
DP Q RK++AY+ L +K+Y A GI+VN+F +LE A KAL E PPVYPVGP
Sbjct: 184 DPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE--PGLDKPPVYPVGP 241
Query: 252 LVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRF 311
LV G E ECLKWLD QP SVL+V FGSGGTL+ EQLNELALGL S QRF
Sbjct: 242 LVNIGK-QEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRF 300
Query: 312 LWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTG 371
LWV+RSP AN++YF S DP FLP GFL+RTK G V+P W+PQ QVL H STG
Sbjct: 301 LWVIRSP-SGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTG 359
Query: 372 GFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDI 431
GFL+HCGWNS LES+V G+P+IAWPLYAEQKMNAVLL +D++ + R + ++GLV RE++
Sbjct: 360 GFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 419
Query: 432 ANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLESE 485
A KGL++GEEGK +R+KM+ LK+AA L DG+STK+L+ VA KWK + E
Sbjct: 420 ARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHKKE 473
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 250/486 (51%), Gaps = 58/486 (11%)
Query: 11 RAHVAMVPTPGIGHLIPQVELAKRLV-HQHNFLVTIF------IPTIDDGTGSSMEPQRQ 63
+ + +P PGIGHL +E AK L H N +T+F +P D S + Q Q
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ 68
Query: 64 V-LESLPTSISTIFLPPVSFDDLPDDVRMEXXXXXXXXXXXXXXXXXXKVLAESTRLVAL 122
+ L LP + PP P E K + S ++V L
Sbjct: 69 IQLIDLPE----VEPPPQELLKSP-----EFYILTFLESLIPHVKATIKTIL-SNKVVGL 118
Query: 123 VVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVK--FSCEYRDVPEPVQLP 180
V+D F + DV NEFG+P Y+F T+ LSL+ L ++ F RD + + +P
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIP 177
Query: 181 GC---VPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEG 237
G VP N A K+ Y + ++++ GI+VN+F DLE + AL +
Sbjct: 178 GISNQVPSNVLPDA---CFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 238 DSSFKPPPVYPVGPLVQ-TGSTNETNNDRRHE-CLKWLDEQPSESVLFVCFGSGG-TLSP 294
D K PP+Y VGPL+ G N + +H+ LKWLDEQP +SV+F+CFGS G + P
Sbjct: 235 DE--KIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 295 EQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLD--RTKGVG 352
Q+ E+ALGL+ SG RFLW +A F P+GFL+ +G G
Sbjct: 293 SQIREIALGLKHSGVRFLW------SNSAEKKVF------------PEGFLEWMELEGKG 334
Query: 353 LVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDL 412
++ W+PQV+VL H + GGF+SHCGWNSILES+ GVPI+ WP+YAEQ++NA L+ +
Sbjct: 335 MIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEW 393
Query: 413 KVSFRVKVNE---NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSST 469
V ++V+ + +V E+I K L+ ++ ++ K++ +K+ + NA+ GSS
Sbjct: 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 470 KSLAQV 475
S+ ++
Sbjct: 452 ISVGKL 457
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 232 bits (591), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 250/486 (51%), Gaps = 58/486 (11%)
Query: 11 RAHVAMVPTPGIGHLIPQVELAKRLV-HQHNFLVTIF------IPTIDDGTGSSMEPQRQ 63
+ + +P PGIGHL +E AK L H N +T+F +P D S + Q Q
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ 68
Query: 64 V-LESLPTSISTIFLPPVSFDDLPDDVRMEXXXXXXXXXXXXXXXXXXKVLAESTRLVAL 122
+ L LP + PP P E K + S ++V L
Sbjct: 69 IQLIDLPE----VEPPPQELLKSP-----EFYILTFLESLIPHVKATIKTIL-SNKVVGL 118
Query: 123 VVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVK--FSCEYRDVPEPVQLP 180
V+D F + DV NEFG+P Y+F T+ LSL+ L ++ F RD + + +P
Sbjct: 119 VLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIP 177
Query: 181 GC---VPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEG 237
G VP N A K+ Y + ++++ GI+VN+F DLE + AL +
Sbjct: 178 GISNQVPSNVLPDA---CFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 238 DSSFKPPPVYPVGPLVQ-TGSTNETNNDRRHE-CLKWLDEQPSESVLFVCFGSGG-TLSP 294
D K PP+Y VGPL+ G N + +H+ LKWLDEQP +SV+F+CFGS G + P
Sbjct: 235 DE--KIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 295 EQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLD--RTKGVG 352
Q+ E+ALGL+ SG RFLW +A F P+GFL+ +G G
Sbjct: 293 SQIREIALGLKHSGVRFLW------SNSAEKKVF------------PEGFLEWMELEGKG 334
Query: 353 LVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDL 412
++ W+PQV+VL H + GGF+SHCGWNSILES+ GVPI+ WP+YAEQ++NA L+ +
Sbjct: 335 MIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEW 393
Query: 413 KVSFRVKVNE---NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSST 469
V ++V+ + +V E+I K L+ ++ ++ K++ +K+ + NA+ GSS
Sbjct: 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSL 451
Query: 470 KSLAQV 475
S+ ++
Sbjct: 452 ISVGKL 457
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 209/503 (41%), Gaps = 71/503 (14%)
Query: 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPT 70
+ HV M+P P GH+ P +LAK L+H F +T + +R + P
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAK-LLHLRGFHITF--------VNTEYNHKRLLKSRGPK 58
Query: 71 SISTIFLPPVSFDDLPDDVR-MEXXXXXXXXXXXXXXXXXXKVLAESTRLV--------- 120
+ +F+ +PD + ME L L+
Sbjct: 59 AFDG--FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNV 116
Query: 121 ----ALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCEYRDVPEP 176
LV D S A EF +P ++F+++A L + H + ++D
Sbjct: 117 PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYL 176
Query: 177 VQ---------LPGCVPINGRDFADPFQQRKNE---AYRIFLSFSKQYLVAAGIMVNSFM 224
+PG +D D F + N F+ + + I++N+F
Sbjct: 177 TNGCLETKVDWIPGLKNFRLKDIVD-FIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFN 235
Query: 225 DLETGAFKALMEGDSSFKPPPVYPVGPL----------VQTGSTNETNNDRRHECLKWLD 274
+LE+ AL S P +YP+GPL Q S + ECL WL+
Sbjct: 236 ELESDVINAL-----SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLE 290
Query: 275 EQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMK 334
+ SV++V FGS ++PEQL E A GL + FLW++R P + F +
Sbjct: 291 SKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSE--- 346
Query: 335 DPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIA 394
F + GL+ SW PQ +VL H S GGFL+HCGWNS ESI GVP++
Sbjct: 347 ---------FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLC 396
Query: 395 WPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRAL 454
WP +A+Q + + ++ ++ + N V RE++A +I G++GK ++ K L
Sbjct: 397 WPFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMEL 452
Query: 455 KDAAANALSPDGSSTKSLAQVAQ 477
K A P G S +L +V +
Sbjct: 453 KKKAEENTRPGGCSYMNLNKVIK 475
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 180/375 (48%), Gaps = 52/375 (13%)
Query: 113 LAESTRLVA-LVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSC--- 168
+AE+ R V+ LV D F A D+A E GV F+T LS ++ E+ K
Sbjct: 106 VAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGI 165
Query: 169 EYRDVPEPVQLPGCVPINGRDFADP--FQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDL 226
+ R+ +PG + RD + F + R+ + A + +NSF +L
Sbjct: 166 QGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 227 ETGAFKALMEGDSSF---------KPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQP 277
+ L ++ PPPV P N T CL+WL E+
Sbjct: 226 DDSLTNDLKSKLKTYLNIGPFNLITPPPVVP----------NTTG------CLQWLKERK 269
Query: 278 SESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPF 337
SV+++ FG+ T P ++ L+ LE S F+W +R
Sbjct: 270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARV---------------- 313
Query: 338 DFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 397
LP+GFL++T+G G+VVP W+PQ +VL H + G F++HCGWNS+ ES+ GVP+I P
Sbjct: 314 -HLPEGFLEKTRGYGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPF 371
Query: 398 YAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDA 457
+ +Q++N ++ D L++ R+ E G+ + + + ++ E+GK LR +RAL++
Sbjct: 372 FGDQRLNGRMVEDVLEIGVRI---EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRET 428
Query: 458 AANALSPDGSSTKSL 472
A A+ P GSST++
Sbjct: 429 ADRAVGPKGSSTENF 443
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 186/375 (49%), Gaps = 41/375 (10%)
Query: 111 KVLAESTR-LVALVVDIFGSAAFDVANEFG---VPVYIFFTTTAMVLSLIFHLPELDVK- 165
+ +AE+ + + LV D F D+A E VP++ TA SL+ H+ ++
Sbjct: 109 EAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLW-----TAGPHSLLTHVYTDLIRE 163
Query: 166 --FSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFL-SFSKQYLVAAGIMVNS 222
S E DV LPG + D + + + + L + A + +NS
Sbjct: 164 KTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINS 223
Query: 223 FMDLETGAFKALMEGDSSFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVL 282
F + L+E + + K + VGP T + +++ H CL+WLD+ + SV+
Sbjct: 224 FATIH-----PLIENELNSKFKLLLNVGPFNLTTPQRKVSDE--HGCLEWLDQHENSSVV 276
Query: 283 FVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPK 342
++ FGS T P +L LA LE G F+W R DP + LPK
Sbjct: 277 YISFGSVVTPPPHELTALAESLEECGFPFIWSFRG-----------------DPKEKLPK 319
Query: 343 GFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQK 402
GFL+RTK G +V +W+PQV++L+H S G FL+H GWNS+LE IV GVP+I+ P + +Q
Sbjct: 320 GFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQG 378
Query: 403 MNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANAL 462
+N +L L++ V +NG++ +E I + + E+G ++R K+ LK++A A+
Sbjct: 379 LNTILTESVLEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAV 435
Query: 463 SPDGSSTKSLAQVAQ 477
+G+S + Q
Sbjct: 436 EQNGTSAMDFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 348 TKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMN 404
T G+ + W PQ +L H T F++H G N I E+I HG+P + PL+A+Q N
Sbjct: 65 TLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 355 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLID 410
V W PQ+ +L S F++H G S +E++ + VP++A P AEQ MNA +++
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 355 VPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLL 408
V W PQ+ +LR F++H G E + P+IA P +Q NA +L
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|2CQO|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
Hypothetical Protein Flj11067
Length = 119
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 29 VELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTS 71
V+L R + V++ + ++ GTG ++P ++ES P+S
Sbjct: 76 VKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNVIIESGPSS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,005,969
Number of Sequences: 62578
Number of extensions: 576153
Number of successful extensions: 1253
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 17
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)