Query 011396
Match_columns 487
No_of_seqs 124 out of 1450
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 00:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 4.6E-67 9.9E-72 526.2 43.4 457 11-483 5-471 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 1E-65 2.3E-70 513.4 42.1 454 10-479 2-466 (470)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.7E-65 3.6E-70 518.2 43.8 450 9-483 7-473 (477)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.3E-65 7.1E-70 512.6 44.2 441 1-481 1-450 (451)
5 PLN00164 glucosyltransferase; 100.0 1.2E-64 2.5E-69 513.8 44.1 459 10-482 2-474 (480)
6 PLN02173 UDP-glucosyl transfer 100.0 2.3E-64 5.1E-69 504.0 43.6 422 11-480 5-447 (449)
7 PLN02210 UDP-glucosyl transfer 100.0 5.2E-64 1.1E-68 505.9 41.9 432 10-480 7-454 (456)
8 PLN02670 transferase, transfer 100.0 7.1E-64 1.5E-68 502.8 41.6 444 11-483 6-467 (472)
9 PLN02555 limonoid glucosyltran 100.0 1.7E-63 3.6E-68 501.9 44.3 448 11-485 7-473 (480)
10 PLN02207 UDP-glycosyltransfera 100.0 1.2E-63 2.6E-68 500.7 42.9 448 10-482 2-466 (468)
11 PLN02208 glycosyltransferase f 100.0 1.6E-63 3.4E-68 499.2 42.7 428 9-482 2-440 (442)
12 PLN03004 UDP-glycosyltransfera 100.0 6.1E-64 1.3E-68 501.3 39.5 441 11-470 3-450 (451)
13 PLN02562 UDP-glycosyltransfera 100.0 3.7E-63 8E-68 499.3 43.4 435 8-480 3-448 (448)
14 PLN02534 UDP-glycosyltransfera 100.0 3.2E-63 6.9E-68 500.4 42.3 450 9-482 6-487 (491)
15 PLN02554 UDP-glycosyltransfera 100.0 6.6E-63 1.4E-67 503.0 43.4 455 11-483 2-480 (481)
16 PLN00414 glycosyltransferase f 100.0 5.7E-63 1.2E-67 495.7 41.7 434 9-487 2-446 (446)
17 PLN02764 glycosyltransferase f 100.0 1.2E-62 2.5E-67 490.1 41.9 430 11-486 5-450 (453)
18 PLN03007 UDP-glucosyltransfera 100.0 1.5E-62 3.2E-67 501.1 43.4 447 11-482 5-481 (482)
19 PLN02152 indole-3-acetate beta 100.0 2.3E-62 4.9E-67 490.5 42.5 434 10-479 2-454 (455)
20 PLN02167 UDP-glycosyltransfera 100.0 9.9E-62 2.1E-66 493.6 42.0 448 10-482 2-473 (475)
21 PLN02448 UDP-glycosyltransfera 100.0 2.9E-61 6.3E-66 489.2 43.8 435 9-481 8-457 (459)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-45 3.8E-50 376.1 30.1 386 12-460 21-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 9.4E-47 2E-51 391.8 9.3 399 13-482 2-441 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 6.1E-41 1.3E-45 337.5 31.2 374 18-476 2-387 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 5.3E-41 1.1E-45 339.4 25.3 368 12-460 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 5.6E-39 1.2E-43 333.6 24.0 395 11-460 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 5.1E-38 1.1E-42 312.9 22.6 381 11-478 1-397 (406)
28 PRK12446 undecaprenyldiphospho 100.0 7.3E-27 1.6E-31 229.9 26.8 323 11-453 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-23 2.4E-28 206.2 24.7 308 12-438 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 6.2E-23 1.3E-27 199.6 27.1 325 13-460 2-337 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.6E-21 3.5E-26 190.6 23.1 82 351-441 229-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 4.5E-18 9.8E-23 169.3 30.3 344 11-480 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.8E-17 1E-21 161.4 27.6 323 13-453 1-333 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.8 2.4E-17 5.1E-22 164.7 22.0 106 362-477 262-384 (385)
35 TIGR01133 murG undecaprenyldip 99.7 6.8E-15 1.5E-19 145.8 28.2 85 360-453 243-330 (348)
36 PRK00025 lpxB lipid-A-disaccha 99.7 3.5E-15 7.6E-20 149.8 22.0 108 362-480 256-376 (380)
37 PRK13609 diacylglycerol glucos 99.7 3.1E-15 6.7E-20 150.2 20.8 164 278-479 201-369 (380)
38 COG4671 Predicted glycosyl tra 99.6 8.4E-14 1.8E-18 129.5 21.9 341 9-441 7-365 (400)
39 TIGR03590 PseG pseudaminic aci 99.6 5.4E-14 1.2E-18 134.2 16.2 105 280-408 171-279 (279)
40 PRK13608 diacylglycerol glucos 99.5 2.3E-12 4.9E-17 129.6 25.4 166 278-481 201-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 6E-16 1.3E-20 136.4 -1.4 134 281-441 1-144 (167)
42 TIGR03492 conserved hypothetic 99.5 1.7E-12 3.8E-17 129.9 22.9 108 353-476 281-393 (396)
43 PLN02605 monogalactosyldiacylg 99.4 1.5E-11 3.2E-16 123.4 22.7 81 351-441 265-347 (382)
44 cd03814 GT1_like_2 This family 99.2 2.4E-08 5.3E-13 98.8 31.2 110 350-478 246-362 (364)
45 PF03033 Glyco_transf_28: Glyc 99.2 2.4E-11 5.2E-16 103.5 7.7 121 14-149 1-131 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.1 7.2E-08 1.6E-12 99.5 29.4 128 281-441 264-400 (465)
47 cd03800 GT1_Sucrose_synthase T 99.1 1.3E-07 2.7E-12 95.4 29.9 79 351-441 283-368 (398)
48 COG3980 spsG Spore coat polysa 99.1 3.3E-09 7.2E-14 96.3 15.9 141 280-452 159-301 (318)
49 cd03823 GT1_ExpE7_like This fa 99.1 1.4E-07 3.1E-12 93.0 28.7 80 350-441 242-329 (359)
50 cd03794 GT1_wbuB_like This fam 99.1 1.1E-07 2.3E-12 94.8 27.0 81 349-441 273-365 (394)
51 PRK05749 3-deoxy-D-manno-octul 99.0 9.2E-08 2E-12 97.5 25.3 79 362-453 314-397 (425)
52 cd03818 GT1_ExpC_like This fam 99.0 9.2E-07 2E-11 89.3 32.0 82 350-441 280-366 (396)
53 cd03801 GT1_YqgM_like This fam 99.0 9.1E-07 2E-11 87.0 31.2 80 350-441 255-341 (374)
54 cd03808 GT1_cap1E_like This fa 99.0 1.3E-06 2.9E-11 85.7 31.4 80 351-442 246-330 (359)
55 cd04962 GT1_like_5 This family 99.0 6.6E-07 1.4E-11 89.3 29.2 112 351-480 253-369 (371)
56 cd03817 GT1_UGDG_like This fam 99.0 9.2E-07 2E-11 87.6 30.0 79 351-442 259-344 (374)
57 cd03816 GT1_ALG1_like This fam 99.0 1.6E-06 3.5E-11 88.1 30.5 91 351-455 294-399 (415)
58 TIGR00236 wecB UDP-N-acetylglu 98.9 6.4E-08 1.4E-12 96.6 19.0 106 351-477 255-363 (365)
59 PRK10307 putative glycosyl tra 98.9 1.9E-06 4.2E-11 87.5 30.1 117 351-484 284-410 (412)
60 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 4E-08 8.7E-13 97.9 16.8 137 278-450 197-343 (363)
61 cd03798 GT1_wlbH_like This fam 98.9 5.4E-06 1.2E-10 81.8 30.8 80 350-441 258-344 (377)
62 cd03825 GT1_wcfI_like This fam 98.9 2.5E-06 5.4E-11 84.7 27.7 112 351-480 244-363 (365)
63 cd03820 GT1_amsD_like This fam 98.8 3.2E-06 6.9E-11 82.6 27.3 90 351-455 235-330 (348)
64 TIGR03449 mycothiol_MshA UDP-N 98.8 1.3E-05 2.7E-10 81.3 32.3 113 351-482 283-402 (405)
65 cd03795 GT1_like_4 This family 98.8 2.7E-06 5.7E-11 84.2 26.5 132 280-442 191-333 (357)
66 cd03805 GT1_ALG2_like This fam 98.8 1.6E-05 3.5E-10 80.0 31.0 79 351-442 280-365 (392)
67 PRK14089 ipid-A-disaccharide s 98.8 6E-07 1.3E-11 87.7 18.4 97 362-475 230-344 (347)
68 cd03796 GT1_PIG-A_like This fa 98.7 1.2E-05 2.6E-10 81.2 27.7 113 351-483 250-369 (398)
69 cd03821 GT1_Bme6_like This fam 98.7 1.3E-05 2.9E-10 79.2 27.4 78 350-441 261-345 (375)
70 cd03822 GT1_ecORF704_like This 98.7 1.4E-05 3.1E-10 79.0 27.4 78 351-441 247-334 (366)
71 cd03811 GT1_WabH_like This fam 98.7 7E-06 1.5E-10 80.3 23.7 79 351-441 246-332 (353)
72 cd05844 GT1_like_7 Glycosyltra 98.7 1.2E-05 2.5E-10 80.1 25.3 79 351-441 245-336 (367)
73 PF04007 DUF354: Protein of un 98.7 5.3E-05 1.2E-09 73.5 28.6 104 21-148 9-112 (335)
74 cd03799 GT1_amsK_like This is 98.6 3.8E-05 8.2E-10 75.9 27.3 80 351-442 236-328 (355)
75 cd03819 GT1_WavL_like This fam 98.6 5E-05 1.1E-09 75.1 27.8 96 351-456 246-347 (355)
76 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 5.9E-06 1.3E-10 82.1 19.6 131 279-440 201-338 (365)
77 COG1519 KdtA 3-deoxy-D-manno-o 98.6 0.0002 4.3E-09 70.0 29.1 321 15-459 52-405 (419)
78 cd03802 GT1_AviGT4_like This f 98.6 4.3E-05 9.4E-10 74.9 25.6 130 281-441 172-308 (335)
79 cd03807 GT1_WbnK_like This fam 98.5 0.00019 4.1E-09 70.5 28.8 77 351-441 251-332 (365)
80 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00036 7.9E-09 71.4 31.2 81 351-441 317-406 (439)
81 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00022 4.7E-09 78.2 29.3 114 351-481 548-670 (1050)
82 TIGR03087 stp1 sugar transfera 98.5 0.0002 4.4E-09 72.3 27.9 79 349-441 278-362 (397)
83 TIGR03088 stp2 sugar transfera 98.4 0.00027 6E-09 70.6 28.1 112 352-481 256-372 (374)
84 cd04951 GT1_WbdM_like This fam 98.4 0.0001 2.3E-09 72.8 24.2 87 351-453 245-336 (360)
85 cd04955 GT1_like_6 This family 98.4 0.00056 1.2E-08 67.8 29.3 107 350-478 247-361 (363)
86 PRK09922 UDP-D-galactose:(gluc 98.4 0.00014 3E-09 72.4 24.5 131 281-443 181-326 (359)
87 cd03809 GT1_mtfB_like This fam 98.3 8.5E-05 1.8E-09 73.4 21.4 91 350-457 252-349 (365)
88 cd03812 GT1_CapH_like This fam 98.3 0.0004 8.6E-09 68.7 25.1 85 351-451 249-338 (358)
89 PF02350 Epimerase_2: UDP-N-ac 98.3 4.1E-06 8.9E-11 82.4 10.5 140 277-452 178-326 (346)
90 PLN02275 transferase, transfer 98.3 0.0022 4.8E-08 64.1 29.6 75 351-439 286-371 (371)
91 TIGR02470 sucr_synth sucrose s 98.3 0.0065 1.4E-07 65.4 34.1 53 377-439 655-707 (784)
92 TIGR02149 glgA_Coryne glycogen 98.2 0.0039 8.4E-08 62.5 30.9 117 352-481 261-386 (388)
93 KOG3349 Predicted glycosyltran 98.2 2.6E-06 5.6E-11 70.1 6.0 116 281-419 5-133 (170)
94 COG0381 WecB UDP-N-acetylgluco 98.2 0.00038 8.2E-09 67.4 20.9 331 11-454 3-351 (383)
95 PLN02846 digalactosyldiacylgly 98.2 0.00096 2.1E-08 67.8 24.9 72 355-441 288-363 (462)
96 PRK15427 colanic acid biosynth 98.1 0.0037 8E-08 63.3 28.2 113 351-481 279-405 (406)
97 PRK01021 lpxB lipid-A-disaccha 98.1 0.0031 6.6E-08 65.3 27.4 192 245-470 382-597 (608)
98 PRK15179 Vi polysaccharide bio 98.1 0.011 2.3E-07 63.4 31.6 95 351-455 574-674 (694)
99 COG0763 LpxB Lipid A disacchar 98.1 0.0018 4E-08 62.7 23.0 109 362-480 259-380 (381)
100 cd03792 GT1_Trehalose_phosphor 98.1 0.0032 7E-08 62.9 26.4 110 351-480 252-370 (372)
101 PRK00654 glgA glycogen synthas 98.1 0.0012 2.6E-08 68.2 23.2 106 363-482 352-463 (466)
102 PLN00142 sucrose synthase 98.1 0.0048 1E-07 66.4 27.9 55 377-441 677-736 (815)
103 cd03806 GT1_ALG11_like This fa 98.0 0.0026 5.6E-08 64.7 24.0 79 351-442 305-393 (419)
104 PLN02501 digalactosyldiacylgly 98.0 0.0074 1.6E-07 63.3 26.4 75 353-442 603-682 (794)
105 cd03791 GT1_Glycogen_synthase_ 97.9 0.0066 1.4E-07 62.9 26.3 115 351-479 351-474 (476)
106 PF02684 LpxB: Lipid-A-disacch 97.8 0.0042 9E-08 61.4 20.3 99 361-469 254-365 (373)
107 cd03804 GT1_wbaZ_like This fam 97.8 0.0014 3E-08 64.9 17.3 127 282-442 197-327 (351)
108 cd04950 GT1_like_1 Glycosyltra 97.6 0.082 1.8E-06 52.9 27.8 109 350-481 253-371 (373)
109 cd04949 GT1_gtfA_like This fam 97.6 0.0043 9.2E-08 61.9 18.5 95 351-454 261-359 (372)
110 TIGR02095 glgA glycogen/starch 97.6 0.075 1.6E-06 55.0 27.7 113 351-480 346-471 (473)
111 cd04946 GT1_AmsK_like This fam 97.6 0.0019 4.2E-08 65.4 14.8 111 351-476 289-406 (407)
112 COG5017 Uncharacterized conser 97.5 0.00055 1.2E-08 55.5 8.2 111 282-422 2-125 (161)
113 PLN02316 synthase/transferase 97.5 0.15 3.2E-06 56.7 29.0 117 352-481 901-1033(1036)
114 PLN02949 transferase, transfer 97.4 0.19 4.2E-06 51.6 32.6 114 351-484 335-459 (463)
115 PF00534 Glycos_transf_1: Glyc 97.4 0.00092 2E-08 58.7 8.8 79 351-441 73-158 (172)
116 PRK15484 lipopolysaccharide 1, 97.3 0.01 2.3E-07 59.5 17.0 115 351-483 257-379 (380)
117 TIGR02918 accessory Sec system 97.3 0.069 1.5E-06 55.5 23.3 98 351-454 376-480 (500)
118 PF13844 Glyco_transf_41: Glyc 97.3 0.003 6.5E-08 63.7 12.2 169 277-482 282-463 (468)
119 PRK15490 Vi polysaccharide bio 97.3 0.13 2.8E-06 53.3 23.9 64 351-421 455-523 (578)
120 cd01635 Glycosyltransferase_GT 97.2 0.035 7.7E-07 50.4 18.2 49 350-400 160-216 (229)
121 cd03813 GT1_like_3 This family 97.2 0.089 1.9E-06 54.5 22.2 86 351-451 354-449 (475)
122 PF13692 Glyco_trans_1_4: Glyc 97.1 0.00087 1.9E-08 56.2 5.7 79 351-441 53-135 (135)
123 PLN02939 transferase, transfer 97.0 0.45 9.7E-06 52.3 25.1 82 351-440 837-930 (977)
124 PRK14099 glycogen synthase; Pr 96.8 0.65 1.4E-05 48.2 24.9 114 354-483 354-480 (485)
125 PRK10125 putative glycosyl tra 96.5 1.2 2.6E-05 45.1 29.0 59 364-435 303-365 (405)
126 KOG4626 O-linked N-acetylgluco 96.4 0.074 1.6E-06 54.4 13.3 137 278-441 757-904 (966)
127 PRK09814 beta-1,6-galactofuran 96.4 0.018 3.9E-07 56.6 9.2 108 351-476 207-330 (333)
128 PF06722 DUF1205: Protein of u 96.2 0.0068 1.5E-07 47.4 4.2 56 265-320 26-86 (97)
129 COG3914 Spy Predicted O-linked 95.8 0.15 3.3E-06 51.9 12.5 171 277-482 427-610 (620)
130 PRK10017 colanic acid biosynth 95.7 0.18 3.8E-06 51.2 13.0 87 362-460 322-409 (426)
131 COG1817 Uncharacterized protei 95.4 2.6 5.6E-05 40.1 20.8 106 20-148 8-113 (346)
132 PF08660 Alg14: Oligosaccharid 95.2 0.22 4.9E-06 43.5 10.3 115 18-145 4-127 (170)
133 PF13477 Glyco_trans_4_2: Glyc 95.2 0.21 4.5E-06 41.8 9.9 100 14-145 2-105 (139)
134 PF13579 Glyco_trans_4_4: Glyc 94.9 0.06 1.3E-06 45.9 5.8 97 27-147 6-104 (160)
135 cd03789 GT1_LPS_heptosyltransf 94.6 3.6 7.7E-05 39.1 17.8 38 13-50 1-39 (279)
136 PHA01630 putative group 1 glyc 94.6 0.61 1.3E-05 45.7 12.6 107 362-480 204-329 (331)
137 PRK14098 glycogen synthase; Pr 94.4 0.86 1.9E-05 47.3 13.8 113 351-482 362-486 (489)
138 PHA01633 putative glycosyl tra 93.9 1.2 2.7E-05 43.5 13.0 84 351-441 201-307 (335)
139 TIGR02201 heptsyl_trn_III lipo 93.7 1.3 2.7E-05 43.7 13.1 98 279-395 181-285 (344)
140 PF06258 Mito_fiss_Elm1: Mitoc 93.6 6.5 0.00014 38.1 17.2 59 360-421 221-283 (311)
141 PF13524 Glyco_trans_1_2: Glyc 93.2 0.85 1.8E-05 35.1 8.8 81 376-476 9-91 (92)
142 PRK10916 ADP-heptose:LPS hepto 92.9 6.9 0.00015 38.6 16.9 103 13-144 2-106 (348)
143 PRK10422 lipopolysaccharide co 92.2 9 0.0002 37.8 16.7 98 279-395 183-287 (352)
144 PF13439 Glyco_transf_4: Glyco 91.0 1.6 3.5E-05 37.5 9.0 29 21-50 11-39 (177)
145 TIGR02193 heptsyl_trn_I lipopo 91.0 0.78 1.7E-05 44.6 7.6 133 279-439 179-319 (319)
146 TIGR02400 trehalose_OtsA alpha 90.9 21 0.00046 36.7 23.4 103 357-480 342-455 (456)
147 PF01975 SurE: Survival protei 90.6 0.81 1.8E-05 41.0 6.6 36 13-50 2-37 (196)
148 TIGR03713 acc_sec_asp1 accesso 89.9 1 2.2E-05 46.9 7.7 90 351-457 409-505 (519)
149 PF12000 Glyco_trans_4_3: Gkyc 89.2 6.2 0.00013 34.4 10.7 31 117-147 65-96 (171)
150 TIGR00715 precor6x_red precorr 88.0 6 0.00013 37.1 10.6 34 112-145 59-98 (256)
151 TIGR02195 heptsyl_trn_II lipop 87.2 31 0.00066 33.7 17.9 103 13-144 1-105 (334)
152 TIGR02919 accessory Sec system 85.2 13 0.00027 38.0 12.0 89 351-454 328-422 (438)
153 COG0496 SurE Predicted acid ph 84.3 4.9 0.00011 37.2 7.8 25 24-50 12-36 (252)
154 COG4370 Uncharacterized protei 81.7 3.4 7.4E-05 39.0 5.7 85 356-452 300-387 (412)
155 COG0003 ArsA Predicted ATPase 81.1 13 0.00028 36.1 9.7 38 12-50 2-40 (322)
156 PF04127 DFP: DNA / pantothena 79.7 6.8 0.00015 34.8 6.8 39 11-50 3-53 (185)
157 PF04464 Glyphos_transf: CDP-G 78.8 3.2 7E-05 41.3 5.1 97 351-460 252-353 (369)
158 COG0438 RfaG Glycosyltransfera 78.7 60 0.0013 30.6 15.2 79 351-441 257-342 (381)
159 COG1484 DnaC DNA replication p 77.2 11 0.00024 35.3 7.8 39 11-50 105-143 (254)
160 cd02067 B12-binding B12 bindin 77.1 23 0.00049 28.6 8.8 36 13-49 1-36 (119)
161 PRK06849 hypothetical protein; 76.5 14 0.00031 37.0 8.9 36 10-50 3-38 (389)
162 cd00561 CobA_CobO_BtuR ATP:cor 75.9 51 0.0011 28.4 11.2 103 13-129 4-106 (159)
163 COG0859 RfaF ADP-heptose:LPS h 75.5 84 0.0018 30.7 17.3 96 279-395 175-276 (334)
164 PRK06321 replicative DNA helic 75.1 20 0.00042 37.1 9.5 37 14-50 229-265 (472)
165 PRK08057 cobalt-precorrin-6x r 74.8 27 0.00058 32.6 9.6 36 111-146 58-99 (248)
166 PF05159 Capsule_synth: Capsul 74.4 16 0.00034 34.6 8.2 42 353-397 185-226 (269)
167 PRK10964 ADP-heptose:LPS hepto 74.2 4.4 9.6E-05 39.5 4.5 130 281-440 180-321 (322)
168 PRK02261 methylaspartate mutas 73.8 7.4 0.00016 32.6 5.1 40 10-50 2-41 (137)
169 PRK13932 stationary phase surv 73.7 52 0.0011 30.8 11.1 37 11-50 5-41 (257)
170 cd03788 GT1_TPS Trehalose-6-Ph 73.0 9.3 0.0002 39.4 6.7 103 356-479 346-459 (460)
171 PF02310 B12-binding: B12 bind 72.6 25 0.00053 28.3 8.0 36 13-49 2-37 (121)
172 PF07429 Glyco_transf_56: 4-al 72.3 33 0.0007 33.5 9.5 82 351-440 245-332 (360)
173 PRK08760 replicative DNA helic 72.2 16 0.00036 37.7 8.2 37 14-50 232-268 (476)
174 PRK13933 stationary phase surv 72.2 50 0.0011 30.9 10.6 21 28-50 16-36 (253)
175 PRK05986 cob(I)alamin adenolsy 71.2 76 0.0016 28.3 11.6 105 11-129 22-126 (191)
176 PF06925 MGDG_synth: Monogalac 69.9 5.4 0.00012 34.7 3.6 39 109-147 80-124 (169)
177 PRK09620 hypothetical protein; 69.6 29 0.00064 31.9 8.5 39 11-50 3-53 (229)
178 cd00984 DnaB_C DnaB helicase C 69.4 34 0.00074 31.5 9.2 37 14-50 16-52 (242)
179 PRK13935 stationary phase surv 68.9 70 0.0015 29.9 10.8 35 13-50 2-36 (253)
180 PRK05595 replicative DNA helic 68.2 23 0.00049 36.4 8.2 37 14-50 204-240 (444)
181 PF04413 Glycos_transf_N: 3-De 67.4 30 0.00064 30.7 7.8 100 14-147 24-126 (186)
182 PRK05973 replicative DNA helic 67.4 11 0.00024 34.9 5.2 37 13-50 66-102 (237)
183 PF07355 GRDB: Glycine/sarcosi 67.3 12 0.00026 36.4 5.5 44 101-144 63-116 (349)
184 PRK14501 putative bifunctional 66.6 2.1E+02 0.0045 31.5 19.3 108 355-482 346-463 (726)
185 PRK05748 replicative DNA helic 66.4 56 0.0012 33.5 10.7 38 13-50 205-242 (448)
186 PHA02542 41 41 helicase; Provi 66.3 12 0.00026 38.6 5.7 36 14-50 193-228 (473)
187 PRK05636 replicative DNA helic 65.7 17 0.00038 37.8 6.8 37 14-50 268-304 (505)
188 COG3660 Predicted nucleoside-d 65.5 1.2E+02 0.0026 28.4 15.4 78 298-394 187-270 (329)
189 TIGR00665 DnaB replicative DNA 65.1 35 0.00076 34.8 9.0 38 13-50 197-234 (434)
190 PRK02797 4-alpha-L-fucosyltran 65.0 55 0.0012 31.5 9.3 80 351-438 206-291 (322)
191 COG2099 CobK Precorrin-6x redu 64.7 34 0.00074 31.7 7.6 35 111-145 59-99 (257)
192 COG0541 Ffh Signal recognition 64.0 20 0.00043 36.0 6.4 40 10-50 99-138 (451)
193 COG1618 Predicted nucleotide k 63.9 63 0.0014 28.0 8.5 39 11-50 5-43 (179)
194 cd00550 ArsA_ATPase Oxyanion-t 63.9 48 0.001 31.0 9.0 36 14-50 3-38 (254)
195 PF02571 CbiJ: Precorrin-6x re 63.8 61 0.0013 30.3 9.4 36 111-146 59-100 (249)
196 PRK13789 phosphoribosylamine-- 63.2 23 0.0005 36.0 7.2 34 10-49 3-36 (426)
197 PF02441 Flavoprotein: Flavopr 63.1 11 0.00023 31.2 3.9 37 12-50 1-37 (129)
198 PF02844 GARS_N: Phosphoribosy 62.7 21 0.00046 28.0 5.2 32 112-143 56-90 (100)
199 KOG3339 Predicted glycosyltran 62.5 77 0.0017 27.9 8.9 25 13-38 40-64 (211)
200 cd07039 TPP_PYR_POX Pyrimidine 62.3 65 0.0014 27.8 8.9 26 371-396 65-96 (164)
201 cd03793 GT1_Glycogen_synthase_ 62.2 24 0.00052 37.1 6.9 77 361-441 468-552 (590)
202 PF10649 DUF2478: Protein of u 61.3 1.1E+02 0.0023 26.4 9.7 115 17-148 4-132 (159)
203 PRK03359 putative electron tra 61.1 15 0.00032 34.5 4.8 31 118-148 112-148 (256)
204 PF02951 GSH-S_N: Prokaryotic 60.9 14 0.00031 30.0 4.1 37 13-50 2-41 (119)
205 PF01075 Glyco_transf_9: Glyco 60.8 12 0.00027 34.6 4.4 99 278-395 104-208 (247)
206 PRK12311 rpsB 30S ribosomal pr 60.7 51 0.0011 32.0 8.5 32 117-148 151-184 (326)
207 PRK07773 replicative DNA helic 60.0 43 0.00094 37.7 9.1 37 14-50 220-256 (886)
208 TIGR03600 phage_DnaB phage rep 59.9 76 0.0016 32.2 10.3 37 14-50 197-233 (421)
209 PRK06718 precorrin-2 dehydroge 59.6 1.3E+02 0.0029 26.9 12.0 102 352-461 55-165 (202)
210 COG1703 ArgK Putative periplas 59.6 26 0.00056 33.4 6.1 39 11-50 51-89 (323)
211 PRK01077 cobyrinic acid a,c-di 59.4 68 0.0015 32.9 9.8 38 11-49 3-41 (451)
212 TIGR01917 gly_red_sel_B glycin 59.0 20 0.00043 35.8 5.5 49 97-145 55-113 (431)
213 TIGR01918 various_sel_PB selen 58.6 21 0.00045 35.7 5.5 45 372-418 347-393 (431)
214 PRK08305 spoVFB dipicolinate s 58.6 16 0.00035 32.7 4.4 40 10-50 4-43 (196)
215 PLN03063 alpha,alpha-trehalose 58.0 34 0.00074 37.9 7.8 101 362-483 370-479 (797)
216 PRK06749 replicative DNA helic 57.4 78 0.0017 32.2 9.7 36 14-50 189-224 (428)
217 TIGR03878 thermo_KaiC_2 KaiC d 57.0 1.6E+02 0.0035 27.6 11.2 37 13-50 38-74 (259)
218 PRK08006 replicative DNA helic 56.8 84 0.0018 32.5 9.9 37 14-50 227-263 (471)
219 PRK12342 hypothetical protein; 56.6 19 0.00042 33.7 4.8 31 118-148 109-145 (254)
220 PRK08506 replicative DNA helic 56.3 66 0.0014 33.3 9.1 37 13-50 194-230 (472)
221 PLN02929 NADH kinase 56.3 15 0.00033 35.2 4.1 65 367-441 64-137 (301)
222 PRK13982 bifunctional SbtC-lik 55.9 58 0.0013 33.5 8.5 40 10-50 255-306 (475)
223 PF06506 PrpR_N: Propionate ca 55.9 12 0.00027 32.7 3.3 70 367-441 32-124 (176)
224 PF02142 MGS: MGS-like domain 55.7 24 0.00052 27.3 4.5 34 110-143 52-94 (95)
225 TIGR00708 cobA cob(I)alamin ad 55.6 1.4E+02 0.0031 26.1 10.2 34 13-47 7-40 (173)
226 PRK07004 replicative DNA helic 53.8 77 0.0017 32.6 9.1 37 14-50 216-252 (460)
227 PRK13196 pyrrolidone-carboxyla 53.6 37 0.00079 30.8 6.0 26 11-36 1-28 (211)
228 PRK11889 flhF flagellar biosyn 53.6 82 0.0018 31.7 8.7 39 11-50 241-279 (436)
229 PF00731 AIRC: AIR carboxylase 53.4 1.1E+02 0.0024 26.0 8.4 139 281-460 2-148 (150)
230 PRK13931 stationary phase surv 53.4 1.1E+02 0.0024 28.8 9.2 23 28-50 16-40 (261)
231 COG0552 FtsY Signal recognitio 53.3 58 0.0013 31.6 7.4 39 11-50 139-177 (340)
232 TIGR02370 pyl_corrinoid methyl 53.3 1.2E+02 0.0025 27.2 9.2 39 11-50 84-122 (197)
233 cd01122 GP4d_helicase GP4d_hel 53.0 60 0.0013 30.5 7.8 38 13-50 32-69 (271)
234 PRK10867 signal recognition pa 52.6 93 0.002 31.7 9.3 40 11-50 100-139 (433)
235 PLN02935 Bifunctional NADH kin 52.4 24 0.00052 36.3 5.0 52 367-441 262-318 (508)
236 COG3195 Uncharacterized protei 52.3 60 0.0013 27.8 6.5 75 380-459 88-164 (176)
237 PRK04940 hypothetical protein; 52.2 39 0.00084 29.8 5.7 31 118-148 60-91 (180)
238 PLN02924 thymidylate kinase 52.0 1.9E+02 0.0041 26.4 11.8 46 1-47 6-51 (220)
239 COG2109 BtuR ATP:corrinoid ade 51.6 1.8E+02 0.0038 25.9 10.1 106 12-130 29-134 (198)
240 cd07035 TPP_PYR_POX_like Pyrim 51.4 38 0.00083 28.7 5.6 26 372-397 62-93 (155)
241 PRK09165 replicative DNA helic 51.3 1E+02 0.0022 32.2 9.5 37 14-50 220-270 (497)
242 KOG0780 Signal recognition par 51.3 1.1E+02 0.0025 30.3 9.0 39 11-50 101-139 (483)
243 KOG2825 Putative arsenite-tran 51.2 23 0.00049 32.9 4.1 40 12-52 20-59 (323)
244 PRK13195 pyrrolidone-carboxyla 51.1 33 0.00072 31.3 5.2 25 12-36 2-28 (222)
245 PF00862 Sucrose_synth: Sucros 50.6 19 0.00041 36.8 3.9 33 116-148 399-433 (550)
246 COG0052 RpsB Ribosomal protein 49.4 1.8E+02 0.004 26.9 9.6 31 118-148 156-188 (252)
247 TIGR00087 surE 5'/3'-nucleotid 49.1 1.2E+02 0.0025 28.3 8.6 22 27-50 15-36 (244)
248 TIGR01425 SRP54_euk signal rec 48.7 1.2E+02 0.0027 30.8 9.4 38 12-50 101-138 (429)
249 cd01981 Pchlide_reductase_B Pc 48.6 1.3E+02 0.0029 30.5 9.9 28 115-145 367-394 (430)
250 cd01425 RPS2 Ribosomal protein 48.6 1E+02 0.0022 27.5 8.0 32 117-148 126-159 (193)
251 TIGR01283 nifE nitrogenase mol 48.0 1.6E+02 0.0035 30.2 10.5 27 116-145 393-419 (456)
252 PF12146 Hydrolase_4: Putative 47.9 44 0.00094 24.9 4.7 34 12-46 16-49 (79)
253 cd01968 Nitrogenase_NifE_I Nit 47.9 1.8E+02 0.0038 29.4 10.6 26 116-144 354-379 (410)
254 KOG0853 Glycosyltransferase [C 47.8 25 0.00053 36.2 4.2 68 375-454 376-443 (495)
255 PLN02470 acetolactate synthase 47.5 77 0.0017 33.8 8.3 91 285-396 2-109 (585)
256 cd01976 Nitrogenase_MoFe_alpha 47.4 1.5E+02 0.0033 30.1 10.0 27 116-145 367-393 (421)
257 COG2120 Uncharacterized protei 47.0 97 0.0021 28.6 7.9 108 3-124 2-115 (237)
258 PRK00090 bioD dithiobiotin syn 46.7 1.8E+02 0.0039 26.3 9.6 34 14-48 2-36 (222)
259 cd01974 Nitrogenase_MoFe_beta 46.5 2.1E+02 0.0046 29.2 11.0 27 116-145 375-401 (435)
260 PRK04885 ppnK inorganic polyph 46.5 22 0.00048 33.5 3.6 50 372-441 38-93 (265)
261 PRK00784 cobyric acid synthase 46.5 2.9E+02 0.0062 28.7 12.1 36 12-48 3-39 (488)
262 cd07037 TPP_PYR_MenD Pyrimidin 46.2 65 0.0014 27.8 6.2 26 371-396 62-93 (162)
263 PRK06029 3-octaprenyl-4-hydrox 46.2 30 0.00065 30.7 4.1 39 11-50 1-39 (185)
264 TIGR02655 circ_KaiC circadian 45.7 2.4E+02 0.0052 29.3 11.3 37 13-50 265-301 (484)
265 PRK00346 surE 5'(3')-nucleotid 45.4 63 0.0014 30.2 6.3 23 26-50 14-36 (250)
266 PRK05647 purN phosphoribosylgl 44.5 75 0.0016 28.5 6.5 35 12-49 2-37 (200)
267 PRK13934 stationary phase surv 44.0 2.8E+02 0.0062 26.1 10.6 35 13-50 2-36 (266)
268 PRK14478 nitrogenase molybdenu 43.9 2E+02 0.0044 29.8 10.4 26 116-144 391-416 (475)
269 PRK12726 flagellar biosynthesi 43.4 2.3E+02 0.0049 28.5 9.9 39 11-50 206-244 (407)
270 PRK05632 phosphate acetyltrans 43.2 2.2E+02 0.0048 31.0 11.0 35 13-48 4-39 (684)
271 COG1435 Tdk Thymidine kinase [ 43.2 2.5E+02 0.0053 25.2 10.0 38 12-50 4-42 (201)
272 cd03466 Nitrogenase_NifN_2 Nit 43.2 1.6E+02 0.0035 30.0 9.5 31 112-145 366-396 (429)
273 PRK07206 hypothetical protein; 43.1 74 0.0016 32.1 7.1 34 11-50 2-35 (416)
274 TIGR00959 ffh signal recogniti 43.1 1.5E+02 0.0033 30.2 9.1 39 12-50 100-138 (428)
275 TIGR00750 lao LAO/AO transport 43.0 2.3E+02 0.005 27.2 10.1 40 10-50 33-72 (300)
276 COG1748 LYS9 Saccharopine dehy 43.0 1.4E+02 0.0031 29.8 8.7 33 11-49 1-34 (389)
277 PRK06067 flagellar accessory p 42.6 2.3E+02 0.005 25.8 9.7 37 13-50 27-63 (234)
278 PF01470 Peptidase_C15: Pyrogl 42.4 51 0.0011 29.6 5.1 25 12-36 1-27 (202)
279 PRK07313 phosphopantothenoylcy 42.3 35 0.00076 30.1 4.0 37 12-50 2-38 (182)
280 TIGR02852 spore_dpaB dipicolin 41.6 36 0.00078 30.2 3.9 37 13-50 2-38 (187)
281 PRK07313 phosphopantothenoylcy 41.6 2.5E+02 0.0054 24.8 10.0 54 386-440 108-179 (182)
282 PRK08322 acetolactate synthase 41.4 30 0.00066 36.5 4.1 27 370-396 64-96 (547)
283 PRK02231 ppnK inorganic polyph 41.3 39 0.00086 32.0 4.3 57 362-440 37-97 (272)
284 KOG0202 Ca2+ transporting ATPa 41.3 2E+02 0.0042 31.8 9.7 166 280-480 572-748 (972)
285 cd07038 TPP_PYR_PDC_IPDC_like 41.2 60 0.0013 27.9 5.2 28 370-397 60-93 (162)
286 PRK11199 tyrA bifunctional cho 40.9 2.7E+02 0.0059 27.7 10.5 33 11-49 98-131 (374)
287 smart00851 MGS MGS-like domain 40.9 1.6E+02 0.0034 22.3 8.4 34 110-143 47-89 (90)
288 TIGR00347 bioD dethiobiotin sy 40.8 2.3E+02 0.0049 24.1 9.4 28 18-46 5-32 (166)
289 PRK01231 ppnK inorganic polyph 40.6 1.1E+02 0.0023 29.5 7.2 53 367-441 62-118 (295)
290 PRK05920 aromatic acid decarbo 40.6 39 0.00086 30.4 4.0 38 11-50 3-40 (204)
291 PF02702 KdpD: Osmosensitive K 40.6 43 0.00093 30.0 4.1 39 11-50 5-43 (211)
292 PF06564 YhjQ: YhjQ protein; 40.5 3.1E+02 0.0067 25.5 11.5 35 12-47 2-37 (243)
293 PRK13194 pyrrolidone-carboxyla 40.4 81 0.0018 28.5 6.0 25 13-37 2-28 (208)
294 COG4394 Uncharacterized protei 40.3 1.4E+02 0.0031 28.3 7.5 172 288-481 182-370 (370)
295 COG2185 Sbm Methylmalonyl-CoA 40.2 46 0.001 28.0 4.1 38 10-48 11-48 (143)
296 TIGR01196 edd 6-phosphoglucona 40.1 1.9E+02 0.0041 30.7 9.2 107 9-149 62-179 (601)
297 PF05728 UPF0227: Uncharacteri 39.8 58 0.0013 28.9 5.0 31 120-150 61-92 (187)
298 PF00551 Formyl_trans_N: Formy 39.5 1.5E+02 0.0033 25.9 7.7 35 12-50 1-37 (181)
299 cd02070 corrinoid_protein_B12- 39.5 57 0.0012 29.3 5.0 39 11-50 82-120 (201)
300 PRK13193 pyrrolidone-carboxyla 39.2 96 0.0021 28.1 6.3 25 13-37 2-28 (209)
301 TIGR01284 alt_nitrog_alph nitr 38.9 1.9E+02 0.004 29.8 9.2 27 116-145 393-419 (457)
302 PRK03378 ppnK inorganic polyph 38.7 43 0.00094 32.1 4.2 54 366-441 62-119 (292)
303 PRK13197 pyrrolidone-carboxyla 38.6 88 0.0019 28.5 6.0 25 12-36 2-28 (215)
304 PRK14077 pnk inorganic polypho 38.3 42 0.0009 32.1 4.0 54 366-441 63-120 (287)
305 PRK14098 glycogen synthase; Pr 38.1 52 0.0011 34.2 5.1 40 10-50 4-49 (489)
306 cd01977 Nitrogenase_VFe_alpha 37.9 2.3E+02 0.005 28.7 9.6 26 117-145 357-382 (415)
307 PRK02910 light-independent pro 37.9 2E+02 0.0043 30.2 9.4 28 115-145 359-386 (519)
308 PF08433 KTI12: Chromatin asso 37.5 2.1E+02 0.0044 27.1 8.6 108 12-157 2-115 (270)
309 PRK02155 ppnK NAD(+)/NADH kina 37.2 45 0.00098 32.0 4.1 53 367-441 63-119 (291)
310 PRK11823 DNA repair protein Ra 36.9 3.2E+02 0.007 28.0 10.5 37 13-50 82-118 (446)
311 COG1066 Sms Predicted ATP-depe 36.9 39 0.00084 33.8 3.6 36 13-50 95-130 (456)
312 PRK02649 ppnK inorganic polyph 36.5 45 0.00098 32.2 4.0 53 367-441 68-124 (305)
313 COG2086 FixA Electron transfer 36.2 65 0.0014 30.3 4.8 38 110-147 103-146 (260)
314 TIGR02015 BchY chlorophyllide 36.0 2.9E+02 0.0063 28.1 9.9 33 12-50 286-318 (422)
315 cd03115 SRP The signal recogni 35.9 2.8E+02 0.0061 23.7 9.6 36 14-50 3-38 (173)
316 cd00983 recA RecA is a bacter 35.6 1.5E+02 0.0033 28.9 7.5 36 14-50 58-93 (325)
317 PF01210 NAD_Gly3P_dh_N: NAD-d 35.1 32 0.00069 29.5 2.5 32 13-50 1-32 (157)
318 PRK04296 thymidine kinase; Pro 35.0 2.2E+02 0.0047 25.2 8.0 35 13-48 3-38 (190)
319 COG1087 GalE UDP-glucose 4-epi 34.8 4.3E+02 0.0093 25.6 14.2 31 13-50 2-34 (329)
320 TIGR02012 tigrfam_recA protein 34.6 1.6E+02 0.0035 28.7 7.4 37 13-50 57-93 (321)
321 COG0801 FolK 7,8-dihydro-6-hyd 34.5 82 0.0018 27.1 4.8 34 281-314 3-36 (160)
322 COG1663 LpxK Tetraacyldisaccha 34.4 79 0.0017 30.8 5.2 33 17-50 55-87 (336)
323 TIGR01011 rpsB_bact ribosomal 34.3 2.4E+02 0.0051 25.9 8.1 32 117-148 154-187 (225)
324 COG0143 MetG Methionyl-tRNA sy 34.0 86 0.0019 33.1 5.8 33 22-55 22-57 (558)
325 PRK06732 phosphopantothenate-- 34.0 56 0.0012 30.0 4.1 21 28-49 29-49 (229)
326 TIGR00173 menD 2-succinyl-5-en 33.9 1.1E+02 0.0025 31.1 6.7 26 370-395 64-95 (432)
327 cd01715 ETF_alpha The electron 33.8 81 0.0017 27.3 4.9 38 110-147 75-115 (168)
328 PF02571 CbiJ: Precorrin-6x re 33.7 1.1E+02 0.0023 28.7 5.9 31 115-145 191-225 (249)
329 PRK03372 ppnK inorganic polyph 33.7 54 0.0012 31.7 4.0 54 366-441 71-128 (306)
330 cd01121 Sms Sms (bacterial rad 33.7 3.8E+02 0.0081 26.8 10.1 37 13-50 84-120 (372)
331 COG4088 Predicted nucleotide k 33.5 55 0.0012 29.6 3.6 37 13-50 3-39 (261)
332 PF02492 cobW: CobW/HypB/UreG, 33.4 90 0.0019 27.2 5.2 91 13-128 2-94 (178)
333 KOG3062 RNA polymerase II elon 33.3 85 0.0018 28.8 4.8 38 12-50 2-40 (281)
334 PRK03708 ppnK inorganic polyph 33.1 47 0.001 31.6 3.5 50 372-441 60-112 (277)
335 PRK01911 ppnK inorganic polyph 33.0 53 0.0011 31.5 3.8 54 366-441 63-120 (292)
336 PRK04946 hypothetical protein; 32.9 46 0.001 29.3 3.1 26 355-382 142-168 (181)
337 TIGR03877 thermo_KaiC_1 KaiC d 32.9 3.3E+02 0.0071 25.0 9.1 38 12-50 22-59 (237)
338 COG0297 GlgA Glycogen synthase 32.6 2.4E+02 0.0052 29.3 8.7 93 377-483 381-479 (487)
339 COG0859 RfaF ADP-heptose:LPS h 32.5 4.4E+02 0.0094 25.7 10.4 99 12-148 176-279 (334)
340 PF01012 ETF: Electron transfe 32.1 48 0.001 28.5 3.2 36 112-147 84-122 (164)
341 PRK07710 acetolactate synthase 31.5 79 0.0017 33.6 5.3 27 370-396 79-111 (571)
342 PRK04539 ppnK inorganic polyph 31.2 88 0.0019 30.1 5.0 53 367-441 68-124 (296)
343 PRK07413 hypothetical protein; 31.2 5.3E+02 0.011 25.8 10.4 45 3-48 11-61 (382)
344 PRK05299 rpsB 30S ribosomal pr 31.1 2.7E+02 0.0058 26.2 8.1 32 117-148 156-189 (258)
345 TIGR02699 archaeo_AfpA archaeo 31.0 63 0.0014 28.3 3.6 29 22-50 9-38 (174)
346 PRK10416 signal recognition pa 30.8 4.2E+02 0.0091 25.7 9.7 39 11-50 114-152 (318)
347 cd02034 CooC The accessory pro 30.8 1.1E+02 0.0023 24.7 4.8 37 13-50 1-37 (116)
348 cd02069 methionine_synthase_B1 30.8 98 0.0021 28.1 5.0 40 10-50 87-126 (213)
349 PRK13768 GTPase; Provisional 30.7 2E+02 0.0044 26.8 7.3 38 12-50 3-40 (253)
350 PRK06276 acetolactate synthase 30.5 94 0.002 33.1 5.7 26 371-396 65-96 (586)
351 TIGR00379 cobB cobyrinic acid 30.3 5.2E+02 0.011 26.5 10.8 34 14-48 2-36 (449)
352 TIGR03880 KaiC_arch_3 KaiC dom 30.2 1E+02 0.0022 27.9 5.2 37 13-50 18-54 (224)
353 PRK06921 hypothetical protein; 30.0 2.5E+02 0.0054 26.5 7.8 38 12-49 118-155 (266)
354 PRK14477 bifunctional nitrogen 30.0 4.4E+02 0.0095 30.0 10.9 28 116-146 387-414 (917)
355 PF00282 Pyridoxal_deC: Pyrido 29.9 80 0.0017 31.5 4.7 68 372-441 106-191 (373)
356 cd01141 TroA_d Periplasmic bin 29.9 69 0.0015 28.0 3.9 29 117-145 68-98 (186)
357 PF01075 Glyco_transf_9: Glyco 29.8 2.4E+02 0.0052 25.8 7.8 39 11-50 105-147 (247)
358 PTZ00318 NADH dehydrogenase-li 29.7 67 0.0015 32.6 4.3 40 5-50 4-43 (424)
359 PRK00885 phosphoribosylamine-- 29.7 1.2E+02 0.0025 30.8 6.0 31 12-47 1-31 (420)
360 PF00920 ILVD_EDD: Dehydratase 29.5 79 0.0017 32.8 4.5 47 104-150 65-115 (521)
361 KOG0023 Alcohol dehydrogenase, 29.5 1.7E+02 0.0037 28.4 6.3 36 9-50 180-215 (360)
362 PRK04328 hypothetical protein; 29.2 4.7E+02 0.01 24.2 11.5 38 12-50 24-61 (249)
363 PLN02735 carbamoyl-phosphate s 28.9 3.4E+02 0.0075 31.5 10.0 39 11-50 23-67 (1102)
364 COG1327 Predicted transcriptio 28.8 1.1E+02 0.0024 25.9 4.4 58 377-439 35-92 (156)
365 COG2099 CobK Precorrin-6x redu 28.8 4.2E+02 0.0091 24.8 8.6 100 297-436 117-220 (257)
366 PRK06719 precorrin-2 dehydroge 28.7 86 0.0019 26.9 4.1 33 11-49 13-45 (157)
367 PF13499 EF-hand_7: EF-hand do 28.7 54 0.0012 22.9 2.4 55 419-477 10-64 (66)
368 PRK00994 F420-dependent methyl 28.5 92 0.002 28.5 4.2 35 114-148 56-96 (277)
369 PRK10964 ADP-heptose:LPS hepto 28.2 5.4E+02 0.012 24.7 10.6 39 12-50 1-40 (322)
370 TIGR01282 nifD nitrogenase mol 28.2 2.4E+02 0.0053 29.1 8.0 26 116-144 402-427 (466)
371 CHL00067 rps2 ribosomal protei 28.1 3.8E+02 0.0083 24.6 8.5 32 117-148 160-193 (230)
372 PRK12815 carB carbamoyl phosph 27.8 4.5E+02 0.0097 30.5 10.7 40 10-50 554-599 (1068)
373 PRK01185 ppnK inorganic polyph 27.7 68 0.0015 30.4 3.6 53 367-441 52-105 (271)
374 PF02776 TPP_enzyme_N: Thiamin 27.6 96 0.0021 26.9 4.3 26 372-397 67-98 (172)
375 PRK05784 phosphoribosylamine-- 27.5 2E+02 0.0043 30.0 7.2 32 12-48 1-33 (486)
376 PRK00039 ruvC Holliday junctio 27.5 1.3E+02 0.0028 26.0 5.0 42 108-149 51-107 (164)
377 cd01985 ETF The electron trans 27.4 99 0.0021 27.0 4.4 35 111-145 84-121 (181)
378 TIGR01286 nifK nitrogenase mol 27.4 3.3E+02 0.0071 28.6 8.8 28 115-145 434-461 (515)
379 PRK09054 phosphogluconate dehy 27.2 3.3E+02 0.0072 28.9 8.6 44 106-149 132-180 (603)
380 KOG1250 Threonine/serine dehyd 27.2 6.6E+02 0.014 25.3 14.4 57 378-441 252-316 (457)
381 TIGR01162 purE phosphoribosyla 27.1 3.5E+02 0.0076 23.2 7.3 31 426-460 116-146 (156)
382 TIGR03200 dearomat_oah 6-oxocy 27.1 4.8E+02 0.01 25.9 9.3 161 298-485 114-282 (360)
383 CHL00076 chlB photochlorophyll 27.1 78 0.0017 33.1 4.2 32 112-146 368-399 (513)
384 cd01714 ETF_beta The electron 26.8 1E+02 0.0022 27.7 4.4 36 109-144 99-140 (202)
385 PRK08591 acetyl-CoA carboxylas 26.7 3.2E+02 0.007 27.8 8.7 34 11-50 2-35 (451)
386 PF06506 PrpR_N: Propionate ca 26.6 57 0.0012 28.5 2.7 42 103-148 111-152 (176)
387 TIGR02193 heptsyl_trn_I lipopo 25.9 3.2E+02 0.0069 26.2 8.1 38 13-50 1-39 (319)
388 TIGR02195 heptsyl_trn_II lipop 25.8 6.1E+02 0.013 24.5 10.8 38 12-50 175-217 (334)
389 TIGR00110 ilvD dihydroxy-acid 25.7 1.4E+02 0.003 31.3 5.5 46 104-149 75-124 (535)
390 PRK12475 thiamine/molybdopteri 25.4 5E+02 0.011 25.5 9.3 33 11-49 24-57 (338)
391 COG1797 CobB Cobyrinic acid a, 25.4 5.9E+02 0.013 25.9 9.6 32 14-46 3-35 (451)
392 PRK06395 phosphoribosylamine-- 25.4 3.9E+02 0.0085 27.3 8.8 32 11-48 2-33 (435)
393 PF02572 CobA_CobO_BtuR: ATP:c 25.3 4.6E+02 0.01 22.9 9.5 36 13-49 5-40 (172)
394 PRK06731 flhF flagellar biosyn 25.3 5.2E+02 0.011 24.5 9.0 38 12-50 76-113 (270)
395 PRK09219 xanthine phosphoribos 25.2 1.7E+02 0.0036 26.1 5.4 31 115-145 47-79 (189)
396 COG0503 Apt Adenine/guanine ph 25.1 1.9E+02 0.0042 25.3 5.8 32 114-145 49-82 (179)
397 PF01695 IstB_IS21: IstB-like 25.1 1.2E+02 0.0027 26.5 4.6 39 11-50 47-85 (178)
398 TIGR01278 DPOR_BchB light-inde 25.0 94 0.002 32.5 4.4 31 112-145 358-388 (511)
399 TIGR02201 heptsyl_trn_III lipo 24.8 6.5E+02 0.014 24.4 10.3 28 118-147 260-287 (344)
400 PRK14075 pnk inorganic polypho 24.7 91 0.002 29.3 3.8 50 372-441 44-94 (256)
401 COG0305 DnaB Replicative DNA h 24.6 3.6E+02 0.0078 27.5 8.1 120 14-145 199-352 (435)
402 PHA02754 hypothetical protein; 24.6 1E+02 0.0022 21.2 2.9 23 435-460 7-29 (67)
403 COG2910 Putative NADH-flavin r 24.6 69 0.0015 28.4 2.7 33 13-50 2-34 (211)
404 PRK06270 homoserine dehydrogen 24.5 2.3E+02 0.0051 27.8 6.8 58 361-419 81-150 (341)
405 PRK07525 sulfoacetaldehyde ace 24.4 4.8E+02 0.01 27.8 9.7 27 370-396 69-101 (588)
406 PF02374 ArsA_ATPase: Anion-tr 24.4 1.3E+02 0.0029 29.0 5.0 37 13-50 3-39 (305)
407 KOG2941 Beta-1,4-mannosyltrans 24.3 7E+02 0.015 24.7 12.8 126 10-152 11-142 (444)
408 cd01965 Nitrogenase_MoFe_beta_ 24.1 1E+02 0.0023 31.3 4.4 31 112-145 365-395 (428)
409 PRK13017 dihydroxy-acid dehydr 24.1 1.4E+02 0.0031 31.5 5.3 46 104-149 106-155 (596)
410 PF01497 Peripla_BP_2: Peripla 24.1 98 0.0021 28.1 3.9 32 118-149 60-93 (238)
411 PRK11914 diacylglycerol kinase 24.1 1.2E+02 0.0026 29.1 4.7 26 372-397 67-96 (306)
412 TIGR01369 CPSaseII_lrg carbamo 24.0 6.6E+02 0.014 29.1 11.2 38 11-49 554-597 (1050)
413 PF08323 Glyco_transf_5: Starc 24.0 64 0.0014 30.0 2.7 24 26-50 20-43 (245)
414 TIGR01279 DPOR_bchN light-inde 23.9 4.7E+02 0.01 26.4 9.1 34 11-50 274-307 (407)
415 PRK00911 dihydroxy-acid dehydr 23.8 1.5E+02 0.0032 31.1 5.3 44 105-148 96-143 (552)
416 PRK13234 nifH nitrogenase redu 23.8 1.5E+02 0.0032 28.5 5.2 38 11-49 4-41 (295)
417 PF07015 VirC1: VirC1 protein; 23.5 5.9E+02 0.013 23.5 10.9 35 15-50 6-40 (231)
418 PF10093 DUF2331: Uncharacteri 23.4 2.2E+02 0.0047 28.4 6.2 37 14-50 3-39 (374)
419 PRK06131 dihydroxy-acid dehydr 23.4 1.6E+02 0.0034 31.1 5.4 46 104-149 97-146 (571)
420 COG3563 KpsC Capsule polysacch 23.3 5.9E+02 0.013 26.3 9.1 142 293-477 165-310 (671)
421 PRK04761 ppnK inorganic polyph 23.3 57 0.0012 30.4 2.1 26 371-396 27-56 (246)
422 COG0205 PfkA 6-phosphofructoki 23.1 1.6E+02 0.0035 29.0 5.2 39 11-50 2-42 (347)
423 PRK06456 acetolactate synthase 23.1 1.3E+02 0.0027 32.1 5.0 25 372-396 71-101 (572)
424 COG4567 Response regulator con 23.0 3.5E+02 0.0076 23.2 6.4 86 24-142 18-106 (182)
425 PRK13016 dihydroxy-acid dehydr 22.9 1.5E+02 0.0032 31.3 5.1 44 105-148 102-149 (577)
426 COG1090 Predicted nucleoside-d 22.8 6.7E+02 0.015 23.9 10.3 20 29-49 12-31 (297)
427 PRK03501 ppnK inorganic polyph 22.8 1.3E+02 0.0028 28.4 4.4 51 372-441 42-97 (264)
428 cd02040 NifH NifH gene encodes 22.7 1.4E+02 0.0031 27.8 4.8 37 12-49 2-38 (270)
429 TIGR00421 ubiX_pad polyprenyl 22.6 95 0.0021 27.4 3.3 35 14-50 2-36 (181)
430 cd00501 Peptidase_C15 Pyroglut 22.6 2.6E+02 0.0056 24.8 6.2 25 13-37 2-28 (194)
431 KOG0991 Replication factor C, 22.6 90 0.0019 28.8 3.1 27 11-37 48-74 (333)
432 PRK12743 oxidoreductase; Provi 22.6 4.9E+02 0.011 23.8 8.5 31 14-48 4-34 (256)
433 cd01983 Fer4_NifH The Fer4_Nif 22.6 1.9E+02 0.004 21.3 4.7 33 14-47 2-34 (99)
434 PLN02172 flavin-containing mon 22.6 1.1E+02 0.0024 31.6 4.2 42 1-49 1-42 (461)
435 PRK09354 recA recombinase A; P 22.6 3.9E+02 0.0085 26.4 7.8 36 14-50 63-98 (349)
436 COG0287 TyrA Prephenate dehydr 22.5 5.8E+02 0.012 24.3 8.8 34 11-50 3-36 (279)
437 PRK05579 bifunctional phosphop 22.5 1.3E+02 0.0029 30.2 4.7 40 9-50 4-43 (399)
438 KOG1344 Predicted histone deac 22.5 2.5E+02 0.0054 25.7 5.8 46 103-148 233-300 (324)
439 PF05693 Glycogen_syn: Glycoge 22.5 1.5E+02 0.0033 31.4 5.1 36 124-159 150-185 (633)
440 COG4081 Uncharacterized protei 22.4 1.6E+02 0.0035 24.2 4.1 30 20-50 13-42 (148)
441 cd02032 Bchl_like This family 22.4 1.3E+02 0.0029 28.1 4.6 36 13-49 2-37 (267)
442 PRK13011 formyltetrahydrofolat 22.4 6.9E+02 0.015 23.8 10.2 73 372-455 197-271 (286)
443 PRK12448 dihydroxy-acid dehydr 22.3 1.7E+02 0.0037 31.1 5.4 45 105-149 98-146 (615)
444 CHL00072 chlL photochlorophyll 22.3 1.5E+02 0.0033 28.3 4.9 37 13-50 2-38 (290)
445 COG3854 SpoIIIAA ncharacterize 22.3 6.4E+02 0.014 23.5 9.9 26 11-36 137-162 (308)
446 PRK06249 2-dehydropantoate 2-r 22.1 1.2E+02 0.0026 29.3 4.2 34 11-50 5-38 (313)
447 PRK13010 purU formyltetrahydro 22.1 7E+02 0.015 23.8 10.0 69 376-455 205-275 (289)
448 PRK12825 fabG 3-ketoacyl-(acyl 22.0 5.4E+02 0.012 23.0 8.6 34 11-49 6-39 (249)
449 TIGR02113 coaC_strep phosphopa 21.9 1.2E+02 0.0027 26.5 3.9 36 13-50 2-37 (177)
450 PRK13896 cobyrinic acid a,c-di 21.9 6.9E+02 0.015 25.5 9.7 35 13-48 3-38 (433)
451 KOG1111 N-acetylglucosaminyltr 21.9 2.2E+02 0.0047 28.2 5.6 101 23-148 19-123 (426)
452 TIGR01285 nifN nitrogenase mol 21.7 1.2E+02 0.0027 30.9 4.4 31 111-144 366-396 (432)
453 COG2210 Peroxiredoxin family p 21.7 1.9E+02 0.0042 24.1 4.6 34 15-49 7-40 (137)
454 TIGR02398 gluc_glyc_Psyn gluco 21.6 4.9E+02 0.011 27.1 8.7 109 354-482 365-483 (487)
455 PF14336 DUF4392: Domain of un 21.6 1.7E+02 0.0036 28.1 5.0 39 11-50 40-86 (291)
456 TIGR03457 sulphoacet_xsc sulfo 21.5 4.7E+02 0.01 27.8 9.0 26 371-396 66-97 (579)
457 PRK15408 autoinducer 2-binding 21.5 7E+02 0.015 24.3 9.5 31 117-147 79-113 (336)
458 COG2230 Cfa Cyclopropane fatty 21.4 43 0.00093 31.8 0.9 38 377-415 81-121 (283)
459 cd02071 MM_CoA_mut_B12_BD meth 21.4 4.4E+02 0.0094 21.2 11.6 37 13-50 1-37 (122)
460 TIGR03837 efp_adjacent_2 conse 21.4 1.5E+02 0.0033 29.2 4.6 37 14-50 3-39 (371)
461 TIGR01369 CPSaseII_lrg carbamo 21.4 5.7E+02 0.012 29.6 10.0 39 11-50 6-50 (1050)
462 PF03446 NAD_binding_2: NAD bi 21.2 1.1E+02 0.0024 26.2 3.4 31 11-47 1-31 (163)
463 cd06318 PBP1_ABC_sugar_binding 21.2 6.5E+02 0.014 23.1 9.7 30 117-146 54-87 (282)
464 PF06180 CbiK: Cobalt chelatas 21.1 1.5E+02 0.0033 27.9 4.5 39 280-318 2-43 (262)
465 TIGR01281 DPOR_bchL light-inde 21.0 1.5E+02 0.0033 27.6 4.7 34 13-47 2-35 (268)
466 TIGR00228 ruvC crossover junct 21.0 2E+02 0.0043 24.7 4.7 49 98-150 41-104 (156)
467 PRK12815 carB carbamoyl phosph 20.9 7.3E+02 0.016 28.8 10.7 39 11-50 7-51 (1068)
468 PRK10490 sensor protein KdpD; 20.8 1.1E+02 0.0025 34.5 4.2 38 11-49 24-61 (895)
469 PRK13230 nitrogenase reductase 20.8 1.7E+02 0.0037 27.6 4.9 37 12-49 2-38 (279)
470 PF02585 PIG-L: GlcNAc-PI de-N 20.8 4.5E+02 0.0097 21.1 7.5 16 31-47 17-32 (128)
471 cd01147 HemV-2 Metal binding p 20.7 1.4E+02 0.003 27.7 4.3 30 118-147 74-106 (262)
472 PRK14076 pnk inorganic polypho 20.7 1E+02 0.0023 32.7 3.7 52 370-441 349-404 (569)
473 TIGR02302 aProt_lowcomp conser 20.6 2.7E+02 0.0058 31.1 6.8 58 426-484 474-537 (851)
474 TIGR00064 ftsY signal recognit 20.5 2E+02 0.0043 27.2 5.3 39 11-50 72-110 (272)
475 PRK05858 hypothetical protein; 20.4 2.8E+02 0.006 29.2 6.9 25 372-396 70-100 (542)
476 COG0665 DadA Glycine/D-amino a 20.4 1.3E+02 0.0027 29.8 4.1 35 10-50 3-37 (387)
477 PF13450 NAD_binding_8: NAD(P) 20.4 1.2E+02 0.0027 21.6 3.0 22 28-50 8-29 (68)
478 PRK08229 2-dehydropantoate 2-r 20.3 1.2E+02 0.0026 29.6 3.9 33 11-49 2-34 (341)
479 PRK08673 3-deoxy-7-phosphohept 20.2 2.9E+02 0.0064 27.0 6.4 33 388-421 261-299 (335)
480 PRK06882 acetolactate synthase 20.1 3.1E+02 0.0067 29.1 7.2 27 370-396 68-100 (574)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.6e-67 Score=526.24 Aligned_cols=457 Identities=38% Similarity=0.716 Sum_probs=348.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCC-Cc
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLV-HQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLP-DD 88 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~-~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 88 (487)
++||+++|+|++||++|++.||+.|+ ++ |+.|||++++.+.... ...... ..++.+..+|.++.++++ .+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~-----~~~~~~--~~~i~~~~lp~p~~~glp~~~ 76 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASA-----QSKFLN--STGVDIVGLPSPDISGLVDPS 76 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhh-----hhcccc--CCCceEEECCCccccCCCCCC
Confidence 56999999999999999999999997 55 9999999999732100 000011 125888888876655554 23
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccccc
Q 011396 89 VRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSC 168 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (487)
......+...+....+.+++.++++ ..+|+|||+|.++.|+..+|+++|||+++|+++++..++.+.+.+........
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 154 (481)
T PLN02992 77 AHVVTKIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKE 154 (481)
T ss_pred ccHHHHHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccc
Confidence 2222223333334455666666553 23789999999999999999999999999999999998888776643322111
Q ss_pred CCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcC--CCCCCCCCe
Q 011396 169 EYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEG--DSSFKPPPV 246 (487)
Q Consensus 169 ~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~~~~~~p~~ 246 (487)
+.....++..+||+++++..+++..+.++....+..+.+.......++++++|||++||..+.+++... ......+++
T Consensus 155 ~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v 234 (481)
T PLN02992 155 EHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPV 234 (481)
T ss_pred ccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCce
Confidence 110111245578988888888875443443334555566666677899999999999999999998652 111012479
Q ss_pred eecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCcccccccc
Q 011396 247 YPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANAT 326 (487)
Q Consensus 247 ~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 326 (487)
++|||+++..... . .++++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||++...........
T Consensus 235 ~~VGPl~~~~~~~-~---~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~ 310 (481)
T PLN02992 235 YPIGPLCRPIQSS-K---TDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSA 310 (481)
T ss_pred EEecCccCCcCCC-c---chHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccc
Confidence 9999997643211 1 45679999999988999999999999999999999999999999999999975321000001
Q ss_pred ccccCCC---CCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccccccccch
Q 011396 327 YFGIQSM---KDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKM 403 (487)
Q Consensus 327 ~~~~~~~---~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~ 403 (487)
++.+..+ ......+|++|.+|.+.+|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 311 ~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 390 (481)
T PLN02992 311 YFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNM 390 (481)
T ss_pred cccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHH
Confidence 1111100 0112358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhh-hhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHHHH
Q 011396 404 NAVLLI-DDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALS--PDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 404 na~~v~-~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~--~~g~~~~~~~~~~~~~~ 480 (487)
||++++ + +|+|+.++.. ++.++.++|+++|++++.+++|+.+|++++++++++++|+. +||||++++++|+++++
T Consensus 391 na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 391 NAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQ 468 (481)
T ss_pred HHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence 999995 7 9999999752 12489999999999999987789999999999999999994 69999999999999998
Q ss_pred hhh
Q 011396 481 NLE 483 (487)
Q Consensus 481 ~~~ 483 (487)
+..
T Consensus 469 ~~~ 471 (481)
T PLN02992 469 RFL 471 (481)
T ss_pred HHH
Confidence 753
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1e-65 Score=513.35 Aligned_cols=454 Identities=39% Similarity=0.726 Sum_probs=345.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcC-C-CCceEEeCCCCCCCCC-C
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESL-P-TSISTIFLPPVSFDDL-P 86 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~~~-~ 86 (487)
.++||+++|+|++||++||+.||+.|+.++|..|||++++.+...... ....... + .++++..+|....+++ +
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~----~~~~~~~~~~~~i~~~~lp~~~~~~l~~ 77 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTE----TEAIHAAAARTTCQITEIPSVDVDNLVE 77 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcc----ccccccccCCCceEEEECCCCccccCCC
Confidence 356999999999999999999999998655899999998763211100 0001111 1 2588888986654444 2
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCC-eEEEecchHHHHHHHhhccccccc
Q 011396 87 DDVRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVP-VYIFFTTTAMVLSLIFHLPELDVK 165 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~ 165 (487)
.+......+...+....+.+++.|+++. .+|+|||+|.++.|+..+|+++||| .+++++++++..+.+.+.+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~ 155 (470)
T PLN03015 78 PDATIFTKMVVKMRAMKPAVRDAVKSMK--RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV 155 (470)
T ss_pred CCccHHHHHHHHHHhchHHHHHHHHhcC--CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 2222222344444455566666665542 3789999999999999999999999 688889988888888877654332
Q ss_pred cccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCC--CCCCC
Q 011396 166 FSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGD--SSFKP 243 (487)
Q Consensus 166 ~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~--~~~~~ 243 (487)
...+..+..+++.+||++++...+++..+.++....+..+.+......+++++++|||++||+.+.+++.... .....
T Consensus 156 ~~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~ 235 (470)
T PLN03015 156 VEGEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMK 235 (470)
T ss_pred cccccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccC
Confidence 2221111123456899988899888865544433334555556666788999999999999999999987621 00012
Q ss_pred CCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccc
Q 011396 244 PPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAA 323 (487)
Q Consensus 244 p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (487)
+++++|||+....... . .++++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||++..+..
T Consensus 236 ~~v~~VGPl~~~~~~~-~---~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~--- 308 (470)
T PLN03015 236 VPVYPIGPIVRTNVHV-E---KRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPAS--- 308 (470)
T ss_pred CceEEecCCCCCcccc-c---chHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcc---
Confidence 4799999998532111 1 24579999999988999999999999999999999999999999999999975321
Q ss_pred cccccccCC-CC-CCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceecccccccc
Q 011396 324 NATYFGIQS-MK-DPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQ 401 (487)
Q Consensus 324 ~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ 401 (487)
+..... +. +....+|++|.+|++.+++++.+|+||.+||+|++|++|||||||||++|++++|||||++|+++||
T Consensus 309 ---~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 309 ---YLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred ---ccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 000000 00 1123589999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhhhhccceEEeee-cCCCCcCHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 011396 402 KMNAVLLIDDLKVSFRVKV-NENGLVGREDIANYAKGLIQG--EEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQK 478 (487)
Q Consensus 402 ~~na~~v~~~~G~G~~l~~-~~~~~~~~~~l~~~i~~ll~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
+.||+++++++|+|+++.. .+++.+++++|+++|++++.+ ++|+++|+||+++++++++|+++||||++++++|++.
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~ 465 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKR 465 (470)
T ss_pred HHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Confidence 9999999555999999952 122358999999999999963 5689999999999999999999999999999999988
Q ss_pred H
Q 011396 479 W 479 (487)
Q Consensus 479 ~ 479 (487)
+
T Consensus 466 ~ 466 (470)
T PLN03015 466 C 466 (470)
T ss_pred c
Confidence 6
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-65 Score=518.20 Aligned_cols=450 Identities=29% Similarity=0.517 Sum_probs=339.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCc
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDD 88 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (487)
..++||+++|+|++||++||+.||+.|+.+ |+.|||++++.++... ....... .++++..++.+...+++++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~------~~~~~~~-~~i~~~~lp~P~~~~lPdG 78 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFL------NPLLSKH-PSIETLVLPFPSHPSIPSG 78 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHH------hhhcccC-CCeeEEeCCCCCcCCCCCC
Confidence 447899999999999999999999999887 9999999999732111 1111111 2577777776555666665
Q ss_pred hhhHHH----HHHHHHHhHHHHHHHHHHHhcC--CCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccc
Q 011396 89 VRMETR----ITLTLARSLSSLRDALKVLAES--TRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPEL 162 (487)
Q Consensus 89 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~~--~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 162 (487)
.+.... ....+......+.+.+.+++++ .+|+|||+|.++.|+..+|+++|||++.|++++++.++.+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~ 158 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE 158 (477)
T ss_pred CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc
Confidence 543222 1223333333434444444333 4679999999999999999999999999999999999999886532
Q ss_pred ccc-c-ccCCCCCCCcccCCCCCccCcCCCCCCccc--cchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCC
Q 011396 163 DVK-F-SCEYRDVPEPVQLPGCVPINGRDFADPFQQ--RKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGD 238 (487)
Q Consensus 163 ~~~-~-~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (487)
... . ............+||+++++..+++..+.. ........+.+.......+.++++|||+++|+.+.+++....
T Consensus 159 ~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 238 (477)
T PLN02863 159 MPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL 238 (477)
T ss_pred ccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc
Confidence 100 0 000000011123688877888877754421 112223333344444566788999999999999999987632
Q ss_pred CCCCCCCeeecccCcCCCCCC-------CCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCce
Q 011396 239 SSFKPPPVYPVGPLVQTGSTN-------ETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRF 311 (487)
Q Consensus 239 ~~~~~p~~~~vGp~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 311 (487)
+.+++++|||+++..... .+.+..++++.+||+.++++++|||||||+.....+++.+++.+|+.++.+|
T Consensus 239 ---~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 239 ---GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred ---CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 225799999997543110 0111124579999999988999999999999999999999999999999999
Q ss_pred EEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCc
Q 011396 312 LWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVP 391 (487)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP 391 (487)
||+++.... .......+|++|.++.+.+|+++.+|+||.+||+|++|++|||||||||++||+++|||
T Consensus 316 lw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP 383 (477)
T PLN02863 316 IWCVKEPVN------------EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVP 383 (477)
T ss_pred EEEECCCcc------------cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCC
Confidence 999985422 00112458899999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 011396 392 IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKS 471 (487)
Q Consensus 392 ~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 471 (487)
||++|+++||+.||+++++++|+|+++.....+.++.+++.++|++++.+ ++.||+||+++++.+++|+++||||+++
T Consensus 384 ~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~ 461 (477)
T PLN02863 384 MLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKD 461 (477)
T ss_pred EEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 99999999999999997654899999964322346999999999999842 3899999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 011396 472 LAQVAQKWKNLE 483 (487)
Q Consensus 472 ~~~~~~~~~~~~ 483 (487)
+++|+++++++-
T Consensus 462 l~~~v~~i~~~~ 473 (477)
T PLN02863 462 LDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHhc
Confidence 999999998763
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.3e-65 Score=512.55 Aligned_cols=441 Identities=30% Similarity=0.468 Sum_probs=334.0
Q ss_pred CcccCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCC
Q 011396 1 METQNSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPV 80 (487)
Q Consensus 1 ~~~~~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (487)
||+++ .++||+++|++++||++||+.||+.|+.+ |+.|||++++.+.. . . ... ..++.+..+|+
T Consensus 1 ~~~~~----~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~--~---~----~~~-~~~i~~~~ip~- 64 (451)
T PLN02410 1 MEEKP----ARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYF--S---P----SDD-FTDFQFVTIPE- 64 (451)
T ss_pred CCcCC----CCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCccccc--c---c----ccC-CCCeEEEeCCC-
Confidence 67555 35699999999999999999999999887 99999999987321 0 0 011 12577888774
Q ss_pred CCCCCCCc-hhh--HHHHHH-HHHHhHHHHHHHHHHHhc--CCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHH
Q 011396 81 SFDDLPDD-VRM--ETRITL-TLARSLSSLRDALKVLAE--STRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLS 154 (487)
Q Consensus 81 ~~~~~~~~-~~~--~~~~~~-~~~~~~~~~~~~l~~~~~--~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~ 154 (487)
+++.+ .+. ...+.. ......+.+++.++++.. ..+++|||+|.++.|+..+|+++|||++.|++++++.++
T Consensus 65 ---glp~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 65 ---SLPESDFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred ---CCCcccccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 22221 111 112222 222444566667766542 235799999999999999999999999999999999988
Q ss_pred HHhhcccccccc---ccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHH
Q 011396 155 LIFHLPELDVKF---SCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAF 231 (487)
Q Consensus 155 ~~~~~~~~~~~~---~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (487)
.+.+.+..+... +...........+|++++++..+++...+.........+. ......+++++++|||+++|+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNTf~eLE~~~~ 220 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYR-NTVDKRTASSVIINTASCLESSSL 220 (451)
T ss_pred HHHHHHHHHhccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHH-HHhhcccCCEEEEeChHHhhHHHH
Confidence 887654432210 1000000122347888877777777543322222222222 222356788999999999999999
Q ss_pred HHHhcCCCCCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCce
Q 011396 232 KALMEGDSSFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRF 311 (487)
Q Consensus 232 ~~~~~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 311 (487)
+++.... + +++++|||+........+.++...++.+||++++++++|||||||...++.+++.+++.+|+.++.+|
T Consensus 221 ~~l~~~~---~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~F 296 (451)
T PLN02410 221 SRLQQQL---Q-IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQF 296 (451)
T ss_pred HHHHhcc---C-CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCe
Confidence 9987632 2 48999999975432111112234568899999988999999999999999999999999999999999
Q ss_pred EEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCc
Q 011396 312 LWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVP 391 (487)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP 391 (487)
+|+++....+ ..+....+|++|.+|.+..+ ++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 297 lWv~r~~~~~-----------~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP 364 (451)
T PLN02410 297 LWVIRPGSVR-----------GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVP 364 (451)
T ss_pred EEEEccCccc-----------ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCC
Confidence 9999853210 00111247999999987655 55599999999999999999999999999999999999
Q ss_pred eeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 011396 392 IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKS 471 (487)
Q Consensus 392 ~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 471 (487)
||++|+++||+.||+++++++|+|+.+. .. +++++|+++|+++|.+++|+.||++|+++++++++++++||||+++
T Consensus 365 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~ 440 (451)
T PLN02410 365 MICKPFSSDQKVNARYLECVWKIGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNS 440 (451)
T ss_pred EEeccccccCHHHHHHHHHHhCeeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999988469999997 34 8999999999999988778899999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 011396 472 LAQVAQKWKN 481 (487)
Q Consensus 472 ~~~~~~~~~~ 481 (487)
+++|+++++.
T Consensus 441 l~~fv~~~~~ 450 (451)
T PLN02410 441 LEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 5
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.2e-64 Score=513.83 Aligned_cols=459 Identities=36% Similarity=0.676 Sum_probs=343.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCC----CEEEEEeCCCCCCCCCCCchhhhhhh-cC--CCCceEEeCCCCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHN----FLVTIFIPTIDDGTGSSMEPQRQVLE-SL--PTSISTIFLPPVSF 82 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G----H~Vt~~~~~~~~~~~~~~~~~~~~~~-~~--~~~i~~~~~~~~~~ 82 (487)
+++||+|+|++++||++||+.||+.|+.+ | +.|||++++.+...+ ......... .. ..++.+..+|+..
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~lp~~~- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPES--ASEVAAHVRREAASGLDIRFHHLPAVE- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccch--hHHHHHHHhhcccCCCCEEEEECCCCC-
Confidence 46799999999999999999999999887 6 799999987621100 001111110 01 1158889988653
Q ss_pred CCCCCchhhHHHHHH-HHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccc
Q 011396 83 DDLPDDVRMETRITL-TLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPE 161 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
++.+.+....+.. ......+.+++.+..+ ..+++|||+|.++.|+..+|+++|||++.|+++++..++.+.+.+.
T Consensus 78 --~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l--~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 78 --PPTDAAGVEEFISRYIQLHAPHVRAAIAGL--SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred --CCCccccHHHHHHHHHHhhhHHHHHHHHhc--CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 2323222222222 3333444555555443 2256999999999999999999999999999999999999988765
Q ss_pred cccccccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCC--
Q 011396 162 LDVKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDS-- 239 (487)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-- 239 (487)
..+....+......++.+||+++++..+++..+..+....+..+........+++++++|||+++|+.+.+++.....
T Consensus 154 ~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 233 (480)
T PLN00164 154 LDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTP 233 (480)
T ss_pred hcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccc
Confidence 433221111111123447998888888888755443323344444455667788899999999999999999876421
Q ss_pred CCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCc
Q 011396 240 SFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPH 319 (487)
Q Consensus 240 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (487)
....|+++.|||+....... ..+..+.++.+||++++++++|||||||+.....+++.+++.+|+.++++|||+++...
T Consensus 234 ~~~~~~v~~vGPl~~~~~~~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~ 312 (480)
T PLN00164 234 GRPAPTVYPIGPVISLAFTP-PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPP 312 (480)
T ss_pred cCCCCceEEeCCCccccccC-CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 11136899999997432111 11124568999999999899999999999889999999999999999999999998542
Q ss_pred cccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceecccccc
Q 011396 320 ERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 399 (487)
.. +... . .+.+....+|++|.++.+.+++++.+|+||.+||+|++|++|||||||||++|++++|||||++|+++
T Consensus 313 ~~--~~~~--~-~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~ 387 (480)
T PLN00164 313 AA--GSRH--P-TDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYA 387 (480)
T ss_pred cc--cccc--c-cccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccc
Confidence 10 0000 0 00011224789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhhhhccceEEeeecC--CCCcCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 011396 400 EQKMNAVLLIDDLKVSFRVKVNE--NGLVGREDIANYAKGLIQGE--EGKLLRSKMRALKDAAANALSPDGSSTKSLAQV 475 (487)
Q Consensus 400 DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
||+.||+++++++|+|+.+...+ ++.+++++|.++|+++|.++ +|+.+|++|+++++.+++++++||||++++++|
T Consensus 388 DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~ 467 (480)
T PLN00164 388 EQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRL 467 (480)
T ss_pred cchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999998754489999986431 23479999999999999864 388999999999999999999999999999999
Q ss_pred HHHHHhh
Q 011396 476 AQKWKNL 482 (487)
Q Consensus 476 ~~~~~~~ 482 (487)
++++.+.
T Consensus 468 v~~~~~~ 474 (480)
T PLN00164 468 AREIRHG 474 (480)
T ss_pred HHHHHhc
Confidence 9999875
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.3e-64 Score=503.99 Aligned_cols=422 Identities=29% Similarity=0.461 Sum_probs=330.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCC-c-
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPD-D- 88 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~- 88 (487)
+.||+++|++++||++||+.||+.|+.+ |+.|||++++.+.... ......++++..+++ +++. +
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~---------~~~~~~~i~~~~ipd----glp~~~~ 70 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTI---------HLDPSSPISIATISD----GYDQGGF 70 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhc---------ccCCCCCEEEEEcCC----CCCCccc
Confidence 4699999999999999999999999887 9999999998732111 111123588888874 2332 1
Q ss_pred --hhhHHHHHHHHH-HhHHHHHHHHHHHhcCCCc-eEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccc
Q 011396 89 --VRMETRITLTLA-RSLSSLRDALKVLAESTRL-VALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDV 164 (487)
Q Consensus 89 --~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~p-D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
......+...+. ...+.+++.|+.+..+.+| +|||+|.++.|+..+|+++|||.+.|++++++.++.+.+. ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~~ 149 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YINN 149 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhcc
Confidence 111212232222 4455666666654333355 9999999999999999999999999999988887665432 1111
Q ss_pred ccccCCCCCCCcccCCCCCccCcCCCCCCcccc--chHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCC
Q 011396 165 KFSCEYRDVPEPVQLPGCVPINGRDFADPFQQR--KNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFK 242 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (487)
+ .....+||++++...+++..+.+. ....+..+.+......+++++++|||+++|+.+.+++.. .
T Consensus 150 -------~-~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-----~ 216 (449)
T PLN02173 150 -------G-SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK-----V 216 (449)
T ss_pred -------C-CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-----c
Confidence 0 122346888777778887655432 222344455666677889999999999999999988854 2
Q ss_pred CCCeeecccCcCCC-------CCCC---CCC--ccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Q 011396 243 PPPVYPVGPLVQTG-------STNE---TNN--DRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQR 310 (487)
Q Consensus 243 ~p~~~~vGp~~~~~-------~~~~---~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 310 (487)
+++++|||+.+.. .... +.| +.++++.+||+.++++++|||||||+...+.+++.+++.+| ++.+
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred -CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 3799999997421 0000 111 12446999999999999999999999999999999999999 7788
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCC
Q 011396 311 FLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGV 390 (487)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~Gv 390 (487)
|+|++..... ..+|++|.++.+.+|+++.+|+||.+||+|++|++|||||||||++|++++||
T Consensus 294 flWvvr~~~~-----------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GV 356 (449)
T PLN02173 294 YLWVVRASEE-----------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGV 356 (449)
T ss_pred EEEEEeccch-----------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCC
Confidence 9999985322 34788998888778899999999999999999999999999999999999999
Q ss_pred ceeccccccccchhhHhhhhhccceEEeeecC-CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChH
Q 011396 391 PIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSST 469 (487)
Q Consensus 391 P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 469 (487)
|||++|+++||+.||+++++++|+|+.+...+ ++.++.++|+++|+++|.+++|+.+|+||+++++++++|+++||||+
T Consensus 357 P~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~ 436 (449)
T PLN02173 357 PMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTD 436 (449)
T ss_pred CEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999998579999987543 23479999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011396 470 KSLAQVAQKWK 480 (487)
Q Consensus 470 ~~~~~~~~~~~ 480 (487)
+++++|+++++
T Consensus 437 ~~l~~~v~~~~ 447 (449)
T PLN02173 437 ININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 7
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.2e-64 Score=505.91 Aligned_cols=432 Identities=25% Similarity=0.428 Sum_probs=322.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHH--HhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRL--VHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L--~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (487)
++.||+|+|+|++||++|++.||+.| ++| |++|||++++.++..... .. .. ...+.+..+++ +++.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~~~---~~---~~-~~~~~~~~~~~----glp~ 74 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLLST---VE---KP-RRPVDLVFFSD----GLPK 74 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhhcc---cc---CC-CCceEEEECCC----CCCC
Confidence 36799999999999999999999994 476 999999999973221110 00 00 12355555542 3333
Q ss_pred chh-hHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccc
Q 011396 88 DVR-METRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKF 166 (487)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
+.. ....+.. .......+.+++++++.+|||||+|.++.|+..+|+++|||.++|+++++..++.+.+.+......
T Consensus 75 ~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~ 151 (456)
T PLN02210 75 DDPRAPETLLK---SLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSF 151 (456)
T ss_pred CcccCHHHHHH---HHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCC
Confidence 321 1112222 222233444455555558999999999999999999999999999999999888887654322111
Q ss_pred ccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHH-HHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCC
Q 011396 167 SCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFL-SFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPP 245 (487)
Q Consensus 167 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~ 245 (487)
.. ..+......+|+++++...+++..+.......+..+. +.......+.++++|||+++|..+.+++.. . ++
T Consensus 152 ~~-~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-----~-~~ 224 (456)
T PLN02210 152 PD-LEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-----L-KP 224 (456)
T ss_pred Cc-ccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-----c-CC
Confidence 11 1111123457888777777777655433222233333 222345667899999999999999998876 1 47
Q ss_pred eeecccCcCCC---CCC-----C---CCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 011396 246 VYPVGPLVQTG---STN-----E---TNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWV 314 (487)
Q Consensus 246 ~~~vGp~~~~~---~~~-----~---~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (487)
+++|||+++.. ... . +-|..+.+|.+||++++++++|||||||....+.+++.+++.+|+.++.+|||+
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~ 304 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWV 304 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 99999997521 110 0 013345678999999988899999999998889999999999999999999999
Q ss_pred EeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceec
Q 011396 315 VRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIA 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~ 394 (487)
++.... ...++++.++....+.++.+|+||.+||+|++|++|||||||||++|++++|||||+
T Consensus 305 ~~~~~~-----------------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~ 367 (456)
T PLN02210 305 IRPKEK-----------------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVA 367 (456)
T ss_pred EeCCcc-----------------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEe
Confidence 985321 112345555553234456799999999999999999999999999999999999999
Q ss_pred cccccccchhhHhhhhhccceEEeeecC-CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 011396 395 WPLYAEQKMNAVLLIDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLA 473 (487)
Q Consensus 395 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 473 (487)
+|+++||+.||+++++++|+|+.+...+ ++.+++++|+++|+++|.+++|+++|+||++|++.+++|+++||||+++++
T Consensus 368 ~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 368 YPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred cccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999986589999996432 245899999999999998877899999999999999999999999999999
Q ss_pred HHHHHHH
Q 011396 474 QVAQKWK 480 (487)
Q Consensus 474 ~~~~~~~ 480 (487)
+|+++++
T Consensus 448 ~~v~~~~ 454 (456)
T PLN02210 448 LFISDIT 454 (456)
T ss_pred HHHHHHh
Confidence 9999885
No 8
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=7.1e-64 Score=502.80 Aligned_cols=444 Identities=26% Similarity=0.430 Sum_probs=334.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchh
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVR 90 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (487)
++||+++|++++||++||+.||+.|+.| |+.|||++++.+..... .........++++.++.++.++++.+.+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~------~~~~~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLP------KIPSQLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhh------hccccCCCCeeEEECCCCccCCCCCCcc
Confidence 5799999999999999999999999887 99999999997321111 0001122358888888665555664332
Q ss_pred hHHHH----HHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccc
Q 011396 91 METRI----TLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKF 166 (487)
Q Consensus 91 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
....+ ...+......+++.+++++++.+++|||+|.++.|+..+|+++|||++.++++++..++.+.+........
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 21111 12333444555666666666568999999999999999999999999999999999888876543221110
Q ss_pred ccCCCCCCCcc-cCCCCCc------cCcCCCCCCccc--cchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcC
Q 011396 167 SCEYRDVPEPV-QLPGCVP------INGRDFADPFQQ--RKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEG 237 (487)
Q Consensus 167 ~~~~~~~~~~~-~~pg~~~------~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (487)
.. ....+.. .+|++.| +...+++..+.. .....+..+.+......+++++++|||++||+.+.+++...
T Consensus 159 ~~--~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 159 DL--RSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred cC--CCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 00 0001111 1344433 223355543321 11122334445555567888999999999999999998763
Q ss_pred CCCCCCCCeeecccCcCCC-CCCCCCC---ccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEE
Q 011396 238 DSSFKPPPVYPVGPLVQTG-STNETNN---DRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLW 313 (487)
Q Consensus 238 ~~~~~~p~~~~vGp~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 313 (487)
. + +++++|||+.+.. ....+.. ...+++.+||++++++++|||||||+..++.+++.+++.+|+.++++|||
T Consensus 237 ~---~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 237 Y---R-KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred h---C-CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 2 2 4799999997531 1110000 01257899999998889999999999999999999999999999999999
Q ss_pred EEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCcee
Q 011396 314 VVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPII 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l 393 (487)
++..... ........+|++|.++++.+++++.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 313 v~r~~~~-----------~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 313 VLRNEPG-----------TTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred EEcCCcc-----------cccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 9986321 00011235899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhHhhhhhccceEEeeecC-CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 011396 394 AWPLYAEQKMNAVLLIDDLKVSFRVKVNE-NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSL 472 (487)
Q Consensus 394 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 472 (487)
++|+++||+.||+++++ +|+|+.++..+ ++.++.++|+++|+++|.|++|++||+||+++++.+++ .+...+++
T Consensus 382 ~~P~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~ 456 (472)
T PLN02670 382 LFPVLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYV 456 (472)
T ss_pred eCcchhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHH
Confidence 99999999999999999 99999997532 34589999999999999887788999999999999995 67788999
Q ss_pred HHHHHHHHhhh
Q 011396 473 AQVAQKWKNLE 483 (487)
Q Consensus 473 ~~~~~~~~~~~ 483 (487)
++|++++++..
T Consensus 457 ~~~~~~l~~~~ 467 (472)
T PLN02670 457 DELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 9
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-63 Score=501.90 Aligned_cols=448 Identities=28% Similarity=0.442 Sum_probs=335.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhc--CC---CCceEEeCCCCCCCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLES--LP---TSISTIFLPPVSFDDL 85 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~~ 85 (487)
++||+++|+|++||++||+.||+.|+.+ |..|||++++.++....... ..... .+ ..+.+..+++ ++
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~---~~~~~~~~~~~~~~i~~~~~pd----gl 78 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQAN---KIQDGVLKPVGDGFIRFEFFED----GW 78 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccc---cccccccccCCCCeEEEeeCCC----CC
Confidence 5799999999999999999999999887 99999999997432111000 00000 01 1244444442 23
Q ss_pred CCchh---hHHHHHHHH-HHhHHHHHHHHHHHhcCCCc-eEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcc
Q 011396 86 PDDVR---METRITLTL-ARSLSSLRDALKVLAESTRL-VALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLP 160 (487)
Q Consensus 86 ~~~~~---~~~~~~~~~-~~~~~~~~~~l~~~~~~~~p-D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (487)
+.+.+ ....+...+ ....+.+++.|+.+..+.+| +|||+|.++.|+..+|+++|||.++|++++++.++.+.+.+
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 32211 111222222 23445566666654322344 99999999999999999999999999999999999888764
Q ss_pred ccccccccCCCCCCCcccCCCCCccCcCCCCCCccc--cchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCC
Q 011396 161 ELDVKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQ--RKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGD 238 (487)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (487)
.-...... .......+.+||++++...+++..+.. .....+..+.+......+++++++|||++||..+.+++..
T Consensus 159 ~~~~~~~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~-- 235 (480)
T PLN02555 159 HGLVPFPT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK-- 235 (480)
T ss_pred hcCCCccc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh--
Confidence 21000110 000012345799988888888865532 2223344455566667788999999999999999988865
Q ss_pred CCCCCCCeeecccCcCCCCCC-----CCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEE
Q 011396 239 SSFKPPPVYPVGPLVQTGSTN-----ETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLW 313 (487)
Q Consensus 239 ~~~~~p~~~~vGp~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 313 (487)
..| ++.|||+....... ...|+.++++.+||++++++++|||||||+..+..+++.+++.+|+.++++|||
T Consensus 236 ---~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW 311 (480)
T PLN02555 236 ---LCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLW 311 (480)
T ss_pred ---CCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEE
Confidence 234 99999997542111 111334678999999998889999999999999999999999999999999999
Q ss_pred EEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCcee
Q 011396 314 VVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPII 393 (487)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l 393 (487)
+++.... ........+|+++.++.+. ++.+.+|+||.+||+|++|++|||||||||++||+++|||||
T Consensus 312 ~~~~~~~-----------~~~~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l 379 (480)
T PLN02555 312 VMRPPHK-----------DSGVEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVV 379 (480)
T ss_pred EEecCcc-----------cccchhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEE
Confidence 9884311 0000113578888877654 557779999999999999999999999999999999999999
Q ss_pred ccccccccchhhHhhhhhccceEEeeec--CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 011396 394 AWPLYAEQKMNAVLLIDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKS 471 (487)
Q Consensus 394 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~ 471 (487)
++|+++||+.||+++++++|+|+++... .++.+++++|.++|++++.+++|+.+|+||++|++.+++|+++||||+++
T Consensus 380 ~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~ 459 (480)
T PLN02555 380 CFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRN 459 (480)
T ss_pred eCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999999856999999531 12348999999999999988779999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhc
Q 011396 472 LAQVAQKWKNLESE 485 (487)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (487)
+++|++++.+..++
T Consensus 460 l~~~v~~i~~~~~~ 473 (480)
T PLN02555 460 FQEFVDKLVRKSVE 473 (480)
T ss_pred HHHHHHHHHhccce
Confidence 99999999886544
No 10
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-63 Score=500.70 Aligned_cols=448 Identities=31% Similarity=0.596 Sum_probs=334.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCC-CCCCCchhhhhhhcCCCCceEEeCCCCCCCCC-
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHN--FLVTIFIPTIDDG-TGSSMEPQRQVLESLPTSISTIFLPPVSFDDL- 85 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G--H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 85 (487)
+++||+|+|++++||++||+.||+.|+.+ | ..|||++++.++. .... .........+ ++++..+|+......
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~--~~~~~~~~~~-~i~~~~lp~~~~~~~~ 77 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDT--YVKSIASSQP-FVRFIDVPELEEKPTL 77 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHH--hhhhccCCCC-CeEEEEeCCCCCCCcc
Confidence 45799999999999999999999999887 7 9999999987321 0000 0000011112 589999985321111
Q ss_pred CCchhhHHHHHHHHHHhHHHHHHHHHHHhcC----CCc-eEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcc
Q 011396 86 PDDVRMETRITLTLARSLSSLRDALKVLAES----TRL-VALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLP 160 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~p-D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (487)
....+....+...+....+.+++.+.+++++ .+| +|||+|.++.|+..+|+++|||.++|+++++..++.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 78 GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1111112222233333434344455544332 234 99999999999999999999999999999999999888776
Q ss_pred ccccccccC-CCCCCCcccCCCC-CccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCC
Q 011396 161 ELDVKFSCE-YRDVPEPVQLPGC-VPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGD 238 (487)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~pg~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (487)
..++..... .......+.+||+ +++...+++..+.... .+..+.+......+++++++|||+++|.++..++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~- 234 (468)
T PLN02207 158 DRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE- 234 (468)
T ss_pred hccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc-
Confidence 443211000 0001133457998 5788888886553221 1344445556678899999999999999988888541
Q ss_pred CCCCCCCeeecccCcCCCCCCCC--CCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 011396 239 SSFKPPPVYPVGPLVQTGSTNET--NNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVR 316 (487)
Q Consensus 239 ~~~~~p~~~~vGp~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
+ ..|++++|||+........+ .+..++++.+||++++++++|||||||....+.+++.+++.+|+.++++|||+++
T Consensus 235 ~--~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r 312 (468)
T PLN02207 235 Q--NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLR 312 (468)
T ss_pred c--CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEe
Confidence 1 23689999999764321111 0112367999999998889999999999999999999999999999999999998
Q ss_pred CCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccc
Q 011396 317 SPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P 396 (487)
.... ...+.+|++|.++.+..+ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 313 ~~~~--------------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 313 TEEV--------------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred CCCc--------------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecC
Confidence 5321 112358899998887554 6669999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhhhccceEEeeec----CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 011396 397 LYAEQKMNAVLLIDDLKVSFRVKVN----ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSL 472 (487)
Q Consensus 397 ~~~DQ~~na~~v~~~~G~G~~l~~~----~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~ 472 (487)
+++||+.||+++++++|+|+++..+ .++.+++++|+++|+++|.+ ++++||+||+++++.+++|+++||||++++
T Consensus 378 ~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l 456 (468)
T PLN02207 378 MYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAI 456 (468)
T ss_pred ccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999877669999987421 12246999999999999973 368999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 011396 473 AQVAQKWKNL 482 (487)
Q Consensus 473 ~~~~~~~~~~ 482 (487)
++|++++.+.
T Consensus 457 ~~~v~~~~~~ 466 (468)
T PLN02207 457 EKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 11
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.6e-63 Score=499.21 Aligned_cols=428 Identities=25% Similarity=0.377 Sum_probs=327.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCc
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDD 88 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (487)
..++||+++|++++||++|++.||+.|+++ ||+|||++++.+...... ....+..+.+..++....++++.+
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~-------~~a~~~~i~~~~l~~p~~dgLp~g 73 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEH-------HNLFPDSIVFHPLTIPPVNGLPAG 73 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhc-------ccCCCCceEEEEeCCCCccCCCCC
Confidence 346799999999999999999999999987 999999998863221110 011233466666554322445544
Q ss_pred hhhH----HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccc
Q 011396 89 VRME----TRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDV 164 (487)
Q Consensus 89 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
.+.. ..+...+....+.+.+.+++++++.++||||+|. +.|+..+|+++|||++.|+++++..++ +.+.+. .
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~-~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~ 149 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFDF-AQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--G 149 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECC-cHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--c
Confidence 3321 1233344445566666777776666899999995 899999999999999999999998765 555432 1
Q ss_pred ccccCCCCCCCcccCCCCCc----cCcCCCCCCccccchHHHHHHHHHH-hhhhcccEEEEcchhhhchHHHHHHhcCCC
Q 011396 165 KFSCEYRDVPEPVQLPGCVP----INGRDFADPFQQRKNEAYRIFLSFS-KQYLVAAGIMVNSFMDLETGAFKALMEGDS 239 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~----~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
.. ..++||+++ +...+++.. ......+..+.... +...+++++++|||+++|+.+.+++....
T Consensus 150 ~~---------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~- 217 (442)
T PLN02208 150 KL---------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY- 217 (442)
T ss_pred cc---------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc-
Confidence 00 011356543 234444432 12222233333332 35568889999999999999999987632
Q ss_pred CCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCc
Q 011396 240 SFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPH 319 (487)
Q Consensus 240 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (487)
. |++++|||+......... .+.++.+||+.++++++|||||||+..++.+++.+++.+++.++.+++|+++...
T Consensus 218 --~-~~v~~vGpl~~~~~~~~~---~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~ 291 (442)
T PLN02208 218 --H-KKVLLTGPMFPEPDTSKP---LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR 291 (442)
T ss_pred --C-CCEEEEeecccCcCCCCC---CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 2 689999999865321111 5678999999998889999999999988999999999999999999999998542
Q ss_pred cccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceecccccc
Q 011396 320 ERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 399 (487)
. . ......+|++|.++++.+|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|+++
T Consensus 292 ~-----------~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~ 359 (442)
T PLN02208 292 G-----------S-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLS 359 (442)
T ss_pred c-----------c-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcch
Confidence 1 0 011246899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 400 EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGE--EGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 400 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
||+.||+++++++|+|+.+++.+++.+++++|+++|++++.++ .|+++|++++++++.+. ++|||++++++|++
T Consensus 360 DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~ 435 (442)
T PLN02208 360 DQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVE 435 (442)
T ss_pred hhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHH
Confidence 9999999877669999999764434689999999999999874 38899999999999985 47899999999999
Q ss_pred HHHhh
Q 011396 478 KWKNL 482 (487)
Q Consensus 478 ~~~~~ 482 (487)
++++.
T Consensus 436 ~l~~~ 440 (442)
T PLN02208 436 ELQEY 440 (442)
T ss_pred HHHHh
Confidence 99875
No 12
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.1e-64 Score=501.25 Aligned_cols=441 Identities=38% Similarity=0.710 Sum_probs=328.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCC--CEEEEEe--CCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC-CCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHN--FLVTIFI--PTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF-DDL 85 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G--H~Vt~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 85 (487)
+.||+++|++++||++||+.||+.|+.+ | +.||+.. ++.+...... .........+ +++++.+|+... +..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~--~~~~~~~~~~-~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTAT--YISSVSSSFP-SITFHHLPAVTPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhh--hhccccCCCC-CeEEEEcCCCCCCCCc
Confidence 4699999999999999999999999887 8 5666644 4331110000 0001111112 588888886531 111
Q ss_pred CCch-hhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccc
Q 011396 86 PDDV-RMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDV 164 (487)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
.... .....+........+.+.+.|+++....+++|||+|.++.|+..+|+++|||+++|++++++.++.+.+.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1111 111222333345556667777665333345999999999999999999999999999999999999988765432
Q ss_pred ccccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCC
Q 011396 165 KFSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPP 244 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p 244 (487)
..+...........+||++++...+++..+..+....+..+........+++++++|||+++|..+.+++.... ..+
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~---~~~ 235 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL---CFR 235 (451)
T ss_pred cccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC---CCC
Confidence 21111001112345789888888888876544433334445555566778889999999999999999986531 125
Q ss_pred CeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCcccccc
Q 011396 245 PVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAAN 324 (487)
Q Consensus 245 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (487)
++++|||++............+.+|.+||++++++++|||||||+..++.+++.+++.+|+.++++|||+++....
T Consensus 236 ~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~---- 311 (451)
T PLN03004 236 NIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE---- 311 (451)
T ss_pred CEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc----
Confidence 8999999975321110100123569999999988999999999999999999999999999999999999985311
Q ss_pred ccccccCCCCCCCC-CCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccccccccch
Q 011396 325 ATYFGIQSMKDPFD-FLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKM 403 (487)
Q Consensus 325 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~ 403 (487)
...+..... .+|++|.+|.+..|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 312 -----~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 312 -----LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred -----ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 000000112 37899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHH
Q 011396 404 NAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 404 na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
||+++++++|+|+.++..+.+.+++++|+++|++++.| +.||++++++++..+.|+++||||++
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999864899999975422348999999999999998 89999999999999999999999864
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-63 Score=499.25 Aligned_cols=435 Identities=25% Similarity=0.418 Sum_probs=326.4
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCC
Q 011396 8 QIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 8 ~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (487)
|..++||+++|+|++||++||+.||+.|+.+ |+.|||++++.+.... ...... ..+++++.+|+...++.+.
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~------~~~~~~-~~~i~~v~lp~g~~~~~~~ 74 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRI------SATLDP-KLGITFMSISDGQDDDPPR 74 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhh------hhccCC-CCCEEEEECCCCCCCCccc
Confidence 3446799999999999999999999999987 9999999998732111 000111 1258888887532111111
Q ss_pred chhhHHHHHHHHH-HhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccc
Q 011396 88 DVRMETRITLTLA-RSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKF 166 (487)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
....+...+. ...+.++++++++....+++|||+|.++.|+..+|+++|||+++|+++++..++.+.+.+......
T Consensus 75 ---~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 75 ---DFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred ---cHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 1122333333 344556666655422224589999999999999999999999999999999888887765432210
Q ss_pred ccCCCC---CCCc-ccCCCCCccCcCCCCCCcccc--chHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCC
Q 011396 167 SCEYRD---VPEP-VQLPGCVPINGRDFADPFQQR--KNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSS 240 (487)
Q Consensus 167 ~~~~~~---~~~~-~~~pg~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 240 (487)
..+..+ ...+ ..+||+++++..+++..+... ....+..+.+..+...+++++++|||+++|..+.+.+....+.
T Consensus 152 ~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 152 LISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred ccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 000001 0111 246888777888887654322 2233555566667777888999999999999888876542211
Q ss_pred CCCCCeeecccCcCCCCCC---CCCCccccccccccccCCCCcEEEEEecCCC-CCCHHHHHHHHHHHHhcCCceEEEEe
Q 011396 241 FKPPPVYPVGPLVQTGSTN---ETNNDRRHECLKWLDEQPSESVLFVCFGSGG-TLSPEQLNELALGLEMSGQRFLWVVR 316 (487)
Q Consensus 241 ~~~p~~~~vGp~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
-..|++++|||+....... ...+..+.++.+||++++++++|||||||+. ..+.+++.+++.+|+.++++|||+++
T Consensus 232 ~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 232 GQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred ccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 0236899999997653211 1111234567799999988899999999985 67889999999999999999999997
Q ss_pred CCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccc
Q 011396 317 SPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P 396 (487)
.... ..+|++|.++.+ +|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 312 ~~~~-----------------~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 373 (448)
T PLN02562 312 PVWR-----------------EGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP 373 (448)
T ss_pred CCch-----------------hhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC
Confidence 5322 247888887775 4667779999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 011396 397 LYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 397 ~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+++||+.||+++++.+|+|+.+. + +++++|+++|+++|.| ++||+||++++++++++ ++||||++++++|+
T Consensus 374 ~~~DQ~~na~~~~~~~g~g~~~~--~---~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v 444 (448)
T PLN02562 374 VAGDQFVNCAYIVDVWKIGVRIS--G---FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLK 444 (448)
T ss_pred cccchHHHHHHHHHHhCceeEeC--C---CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 99999999999987468888884 3 8999999999999988 89999999999999886 56799999999999
Q ss_pred HHHH
Q 011396 477 QKWK 480 (487)
Q Consensus 477 ~~~~ 480 (487)
++++
T Consensus 445 ~~~~ 448 (448)
T PLN02562 445 DELK 448 (448)
T ss_pred HHhC
Confidence 9874
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.2e-63 Score=500.44 Aligned_cols=450 Identities=29% Similarity=0.487 Sum_probs=332.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC-CCCCC
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF-DDLPD 87 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 87 (487)
.+++||+++|++++||++|++.||+.|+.+ |+.|||++++.+...... ...........++++.++.+.. ++++.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~---~~~~~~~~~~~i~~~~lp~p~~~dglp~ 81 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAK---TIDRARESGLPIRLVQIPFPCKEVGLPI 81 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhh---hhhhccccCCCeEEEEcCCCCccCCCCC
Confidence 345799999999999999999999999887 999999999873211100 0000000011388888885432 34554
Q ss_pred chhhH-----HHHHHHHHHhHHHHHHHHHHHhcC--CCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcc
Q 011396 88 DVRME-----TRITLTLARSLSSLRDALKVLAES--TRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLP 160 (487)
Q Consensus 88 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~--~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 160 (487)
+.+.. ..+...+......+++.+++++++ .+|+|||+|.++.|+..+|+++|||.++|++++++..+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 82 GCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred CccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 42211 123333334444555556655543 46899999999999999999999999999999998887754432
Q ss_pred ccccccccCCCCCCCcccCCCCCc---cCcCCCCCCccccchHHHHHHHHHHhh-hhcccEEEEcchhhhchHHHHHHhc
Q 011396 161 ELDVKFSCEYRDVPEPVQLPGCVP---INGRDFADPFQQRKNEAYRIFLSFSKQ-YLVAAGIMVNSFMDLETGAFKALME 236 (487)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~ 236 (487)
......... ....++.+|++++ +...+++..+... ..+..+...+.. ...++++++|||++||+.+.+++..
T Consensus 162 ~~~~~~~~~--~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 162 LHNAHLSVS--SDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred HhcccccCC--CCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 111111000 1112345677753 5666666533211 112333333332 2456799999999999999999876
Q ss_pred CCCCCCCCCeeecccCcCCCCCC------CCCC-ccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Q 011396 237 GDSSFKPPPVYPVGPLVQTGSTN------ETNN-DRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQ 309 (487)
Q Consensus 237 ~~~~~~~p~~~~vGp~~~~~~~~------~~~~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 309 (487)
.. + +++++|||+....... ...+ ..+.+|.+||++++++++|||||||.....++++.+++.+|+.+++
T Consensus 238 ~~---~-~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~ 313 (491)
T PLN02534 238 AI---K-KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKK 313 (491)
T ss_pred hc---C-CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 32 2 4899999997532110 0001 1235699999999989999999999999999999999999999999
Q ss_pred ceEEEEeCCccccccccccccCCCCCCC-CCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhh
Q 011396 310 RFLWVVRSPHERAANATYFGIQSMKDPF-DFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVH 388 (487)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~ 388 (487)
+|+|+++.... ..+.. ..+|++|.++.+.+|+++.+|+||.+||+|+++++||||||+||++||+++
T Consensus 314 ~flW~~r~~~~------------~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~ 381 (491)
T PLN02534 314 PFIWVIKTGEK------------HSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICS 381 (491)
T ss_pred CEEEEEecCcc------------ccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHc
Confidence 99999985321 00011 136899998888889999999999999999999999999999999999999
Q ss_pred CCceeccccccccchhhHhhhhhccceEEeeec-------C-C-C-CcCHHHHHHHHHHhcc--CchhHHHHHHHHHHHH
Q 011396 389 GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN-------E-N-G-LVGREDIANYAKGLIQ--GEEGKLLRSKMRALKD 456 (487)
Q Consensus 389 GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~-------~-~-~-~~~~~~l~~~i~~ll~--~~~~~~~r~~a~~l~~ 456 (487)
|||||++|+++||+.||+++++++|+|+++... + + + .+++++|.++|++++. +++|+++|+||++|++
T Consensus 382 GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~ 461 (491)
T PLN02534 382 GVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGV 461 (491)
T ss_pred CCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999999999999999998779999988421 1 1 1 4899999999999997 4568999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 457 AAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 457 ~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
.+++++.+||||++++++|++++.+.
T Consensus 462 ~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 462 MARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999764
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.6e-63 Score=502.95 Aligned_cols=455 Identities=34% Similarity=0.596 Sum_probs=339.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCC--CEEEEEeCCCCCCCCC-CCchhhhhhhcCCCCceEEeCCCCCCCCCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHN--FLVTIFIPTIDDGTGS-SMEPQRQVLESLPTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G--H~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (487)
|+||+++|++++||++||+.||+.|+.+ | ..|||++++.++.... ...........-..+++++.+|+..... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--T 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc--c
Confidence 6799999999999999999999999887 8 8899999987432110 0000000000002258889888654211 1
Q ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHhcC-----CCc-eEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccc
Q 011396 88 DVRMETRITLTLARSLSSLRDALKVLAES-----TRL-VALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPE 161 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~p-D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
. . ..+...+....+.+++.+++++++ .+| +|||+|.++.|+..+|+++|||++.|+++++..++.+.+.+.
T Consensus 79 ~--~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 79 E--D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred c--c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1 1 133344455566677777766532 134 899999999999999999999999999999999999988876
Q ss_pred cccc--ccc-CCCCCCCcccCCCCC-ccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcC
Q 011396 162 LDVK--FSC-EYRDVPEPVQLPGCV-PINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEG 237 (487)
Q Consensus 162 ~~~~--~~~-~~~~~~~~~~~pg~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (487)
.++. ... +..+...++.+||+. +++..+++..+.++ ..+..+.+......+++++++|||.++|..+..++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 4332 110 011111234578874 77878887655433 23444555666778899999999999999999999874
Q ss_pred CCCCCCCCeeecccCcCCCCCCCC-CCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 011396 238 DSSFKPPPVYPVGPLVQTGSTNET-NNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVR 316 (487)
Q Consensus 238 ~~~~~~p~~~~vGp~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
+. ..|++++|||+......... ....+.++.+||++++++++|||||||+...+.+++.+++.+|+.++++|||+++
T Consensus 234 ~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~ 311 (481)
T PLN02554 234 SG--DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLR 311 (481)
T ss_pred cc--CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 32 23689999999543221110 0124578999999998889999999999889999999999999999999999998
Q ss_pred CCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccc
Q 011396 317 SPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P 396 (487)
..... ...............+|++|.++.++. +++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 312 ~~~~~---~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 312 RASPN---IMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred CCccc---ccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC
Confidence 63210 000000000001123688998887754 46669999999999999999999999999999999999999999
Q ss_pred cccccchhhH-hhhhhccceEEeeec--------CCCCcCHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHhhcCCCC
Q 011396 397 LYAEQKMNAV-LLIDDLKVSFRVKVN--------ENGLVGREDIANYAKGLIQ-GEEGKLLRSKMRALKDAAANALSPDG 466 (487)
Q Consensus 397 ~~~DQ~~na~-~v~~~~G~G~~l~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~r~~a~~l~~~~~~~~~~~g 466 (487)
+++||+.||+ ++++ +|+|+.+++. +++.+++++|.++|+++|. | +.||+||+++++.+++++++||
T Consensus 388 ~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gG 463 (481)
T PLN02554 388 LYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGG 463 (481)
T ss_pred ccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999995 5777 9999999641 1124899999999999997 5 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhhh
Q 011396 467 SSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 467 ~~~~~~~~~~~~~~~~~ 483 (487)
|+++++++|++++++.+
T Consensus 464 ss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 464 SSHTALKKFIQDVTKNI 480 (481)
T ss_pred hHHHHHHHHHHHHHhhC
Confidence 99999999999998864
No 16
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.7e-63 Score=495.70 Aligned_cols=434 Identities=24% Similarity=0.386 Sum_probs=327.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCc
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDD 88 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (487)
.+++||+++|+|++||++|++.||+.|+++ |++|||++++.++...... ...+..+.+..++.+..++++.+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~-------~~~~~~i~~~~i~lP~~dGLP~g 73 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPL-------NLFPDSIVFEPLTLPPVDGLPFG 73 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhccc-------ccCCCceEEEEecCCCcCCCCCc
Confidence 346899999999999999999999999987 9999999998732211110 11233477766654433456554
Q ss_pred hhhHHH----HHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccc
Q 011396 89 VRMETR----ITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDV 164 (487)
Q Consensus 89 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
.+.... ....+......+.+.++++++..+|||||+|. +.|+..+|+++|||++.|+++++..++.+.+... +
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--~ 150 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--E 150 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh--h
Confidence 332211 12334555566777777776666899999996 8999999999999999999999999888876221 0
Q ss_pred ccccCCCCCCCcccCCCCCc----cCcCCCCC-CccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCC
Q 011396 165 KFSCEYRDVPEPVQLPGCVP----INGRDFAD-PFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDS 239 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~----~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 239 (487)
.. .++|+++. ++..+.+. .+.... ...+.+......+++++++|||+++|+.+.+++....
T Consensus 151 -~~---------~~~pg~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~- 216 (446)
T PLN00414 151 -LG---------FPPPDYPLSKVALRGHDANVCSLFANS---HELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC- 216 (446)
T ss_pred -cC---------CCCCCCCCCcCcCchhhcccchhhccc---HHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc-
Confidence 00 11244432 12221110 111111 1233344455677889999999999999999987632
Q ss_pred CCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCc
Q 011396 240 SFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPH 319 (487)
Q Consensus 240 ~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (487)
+ +++++|||+......... ...+.++.+|||.++++++|||||||......+++.+++.+|+.++.+|+|++....
T Consensus 217 --~-~~v~~VGPl~~~~~~~~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~ 292 (446)
T PLN00414 217 --Q-RKVLLTGPMLPEPQNKSG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK 292 (446)
T ss_pred --C-CCeEEEcccCCCcccccC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 2 479999999754321111 112356899999999999999999999999999999999999999999999998642
Q ss_pred cccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceecccccc
Q 011396 320 ERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA 399 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~ 399 (487)
. ..+....+|++|.++++.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 293 ~------------~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 360 (446)
T PLN00414 293 G------------SSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLA 360 (446)
T ss_pred C------------cccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCccc
Confidence 2 0011246899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 400 EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGE--EGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 400 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
||+.||+++++++|+|+.+...+++.+++++|+++++++|.++ .|+.+|++++++++.+.+ +||++ ..+++|++
T Consensus 361 dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~ 436 (446)
T PLN00414 361 DQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVE 436 (446)
T ss_pred chHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHH
Confidence 9999999997449999999653223589999999999999863 378899999999999864 56634 34899999
Q ss_pred HHHhhhhccC
Q 011396 478 KWKNLESETK 487 (487)
Q Consensus 478 ~~~~~~~~~~ 487 (487)
++++..+.+|
T Consensus 437 ~~~~~~~~~~ 446 (446)
T PLN00414 437 ALENEVNNTK 446 (446)
T ss_pred HHHHhcccCC
Confidence 9998877766
No 17
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-62 Score=490.07 Aligned_cols=430 Identities=25% Similarity=0.398 Sum_probs=324.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCC--CceEEeCCCCCCCCCCCc
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPT--SISTIFLPPVSFDDLPDD 88 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 88 (487)
++||+++|++++||++|++.||+.|+.+ |+.|||++++.+...... . ...+. .+.+..+|.. ++++.+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~------~-~~~~~~~~v~~~~~p~~--~glp~g 74 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH------L-NLFPHNIVFRSVTVPHV--DGLPVG 74 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc------c-ccCCCCceEEEEECCCc--CCCCCc
Confidence 5799999999999999999999999887 999999999973221110 1 11121 2556666632 344444
Q ss_pred hhhH----HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccc
Q 011396 89 VRME----TRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDV 164 (487)
Q Consensus 89 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 164 (487)
.+.. ......+......+++.+++++++.+|||||+|+ +.|+..+|+++|||.+.|+++++..++.+.+ +. +
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~ 150 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--G 150 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--c
Confidence 2211 1122333334444555555555555889999996 8999999999999999999999998888764 11 0
Q ss_pred ccccCCCCCCCcccCCCCCc----cCcCCCCCCcc-cc--chHHHHHHHHHH-hhhhcccEEEEcchhhhchHHHHHHhc
Q 011396 165 KFSCEYRDVPEPVQLPGCVP----INGRDFADPFQ-QR--KNEAYRIFLSFS-KQYLVAAGIMVNSFMDLETGAFKALME 236 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~----~~~~~~~~~~~-~r--~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (487)
... .++||++. ++..+++.... .+ ....+..+.... .....++++++|||+++|+.+.+++..
T Consensus 151 ~~~---------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 151 ELG---------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred cCC---------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHh
Confidence 000 11355542 33444443211 01 001122222323 556778899999999999999999876
Q ss_pred CCCCCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 011396 237 GDSSFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVR 316 (487)
Q Consensus 237 ~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (487)
.. + +++++|||+......... .+.++.+|||.++++++|||||||...+..+++.+++.+|+.++.+|+|++.
T Consensus 222 ~~---~-~~v~~VGPL~~~~~~~~~---~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r 294 (453)
T PLN02764 222 HC---R-KKVLLTGPVFPEPDKTRE---LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVK 294 (453)
T ss_pred hc---C-CcEEEeccCccCcccccc---chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 31 2 489999999754311111 3568999999999999999999999899999999999999999999999998
Q ss_pred CCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccc
Q 011396 317 SPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P 396 (487)
.... . + +....+|++|.++.+.+++++.+|+||.+||+|++|++|||||||||++||+++|||||++|
T Consensus 295 ~~~~---------~--~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P 362 (453)
T PLN02764 295 PPRG---------S--S-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP 362 (453)
T ss_pred CCCC---------C--c-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 5321 0 0 11246899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 011396 397 LYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG--EEGKLLRSKMRALKDAAANALSPDGSSTKSLAQ 474 (487)
Q Consensus 397 ~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 474 (487)
++.||+.||+++++++|+|+.+...+.+.++.++|+++|+++|.+ ++|+++|+++++++++++ ++|||++++++
T Consensus 363 ~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 363 QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred cccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 999999999999755999999854321248999999999999987 348899999999999997 58999999999
Q ss_pred HHHHHHhhhhcc
Q 011396 475 VAQKWKNLESET 486 (487)
Q Consensus 475 ~~~~~~~~~~~~ 486 (487)
|+++++++.+.+
T Consensus 439 lv~~~~~~~~~~ 450 (453)
T PLN02764 439 FIESLQDLVSGT 450 (453)
T ss_pred HHHHHHHhcccc
Confidence 999999987543
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.5e-62 Score=501.13 Aligned_cols=447 Identities=30% Similarity=0.518 Sum_probs=326.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhh----hcCCCCceEEeCCCCCCCCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVL----ESLPTSISTIFLPPVSFDDLP 86 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~ 86 (487)
++||+|+|+|++||++|++.||+.|+.| ||+|||++++.+..... .....+ ...+..+....+|..+ ..++
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~---~~~a~~~~~~~~~~~~~~~~~~p~~~-~glP 79 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFE---KPIEAFKNLNPGLEIDIQIFNFPCVE-LGLP 79 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhh---hhhhhhcccCCCCcceEEEeeCCCCc-CCCC
Confidence 5799999999999999999999999988 99999999997321111 111111 0011123333443211 1233
Q ss_pred Cchhh-----------HHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHH
Q 011396 87 DDVRM-----------ETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSL 155 (487)
Q Consensus 87 ~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~ 155 (487)
.+.+. ...+...+....+.+.+.+++++++.+|||||+|.++.|+..+|+++|||+++|++++++..+.
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 32211 1123333445566777778877777789999999999999999999999999999998887776
Q ss_pred HhhccccccccccCCCCCCCcccCCCCCc---cCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHH
Q 011396 156 IFHLPELDVKFSCEYRDVPEPVQLPGCVP---INGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFK 232 (487)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 232 (487)
+.+..........+ .......+|++++ +...+++.. +........+........+++++++|||+++|..+.+
T Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 160 SYCIRVHKPQKKVA--SSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHHHhcccccccC--CCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 65433211000000 0011223566542 223333321 1111112222233345677889999999999999888
Q ss_pred HHhcCCCCCCCCCeeecccCcCCCCC-------CCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHH
Q 011396 233 ALMEGDSSFKPPPVYPVGPLVQTGST-------NETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLE 305 (487)
Q Consensus 233 ~~~~~~~~~~~p~~~~vGp~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~ 305 (487)
++.+.. .+++++|||+...... ....+..+.++.+||++++++++|||||||+.....+++.+++.+|+
T Consensus 236 ~~~~~~----~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 236 FYKSFV----AKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHhcc----CCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 887642 1479999998653211 00111124678999999988999999999998888999999999999
Q ss_pred hcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHH
Q 011396 306 MSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILES 385 (487)
Q Consensus 306 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~ea 385 (487)
.++.+|||+++.... ..+....+|++|.++.+..|+++.+|+||.+||+|++|++||||||+||++||
T Consensus 312 ~~~~~flw~~~~~~~------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 379 (482)
T PLN03007 312 GSGQNFIWVVRKNEN------------QGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEG 379 (482)
T ss_pred HCCCCEEEEEecCCc------------ccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHH
Confidence 999999999986421 00112358999999999999999999999999999999999999999999999
Q ss_pred HhhCCceeccccccccchhhHhhhhhccceEEeeec-----CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 386 IVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN-----ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 386 l~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~-----~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
+++|||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|++++.|++|+.||+||+++++.+++
T Consensus 380 l~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~ 459 (482)
T PLN03007 380 VAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKA 459 (482)
T ss_pred HHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987545666655211 112389999999999999987788999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhh
Q 011396 461 ALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 461 ~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
++++||||++++++|++++.++
T Consensus 460 a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 460 AVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999865
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.3e-62 Score=490.50 Aligned_cols=434 Identities=26% Similarity=0.421 Sum_probs=324.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcC--CCCceEEeCCCCCCCCCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESL--PTSISTIFLPPVSFDDLPD 87 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~ 87 (487)
.++||+++|++++||++|++.||+.|+.++|+.|||++++.+ . ........ ..+++++.+++ +++.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~----~----~~~~~~~~~~~~~i~~~~i~d----glp~ 69 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSV----I----HRSMIPNHNNVENLSFLTFSD----GFDD 69 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccch----h----hhhhhccCCCCCCEEEEEcCC----CCCC
Confidence 356999999999999999999999998534999999999852 1 01111110 12588888863 2333
Q ss_pred ch-----hhHHHHHHHHHHhHHHHHHHHHHHhcC-CCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccc
Q 011396 88 DV-----RMETRITLTLARSLSSLRDALKVLAES-TRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPE 161 (487)
Q Consensus 88 ~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
+. .....+........+.+.+.++++... .+++|||+|.++.|+..+|+++|||+++|++++++.++.+.+.+.
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 70 GVISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred ccccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 21 111223333344556677777665332 345999999999999999999999999999999999998877642
Q ss_pred cccccccCCCCCCCcccCCCCCccCcCCCCCCcccc--chHHHHHHHHHHhhhh--cccEEEEcchhhhchHHHHHHhcC
Q 011396 162 LDVKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQR--KNEAYRIFLSFSKQYL--VAAGIMVNSFMDLETGAFKALMEG 237 (487)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~ 237 (487)
.. ...+.+||++++...+++..+... .......+.+...... .++++++|||++||..+.+++..
T Consensus 150 ~~----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 150 GN----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred cC----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 11 123347888777788888755321 1112233333333332 24699999999999999998854
Q ss_pred CCCCCCCCeeecccCcCCCC--CC--CC--C-CccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Q 011396 238 DSSFKPPPVYPVGPLVQTGS--TN--ET--N-NDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQR 310 (487)
Q Consensus 238 ~~~~~~p~~~~vGp~~~~~~--~~--~~--~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 310 (487)
.++++|||+.+... .. .. . ++.+.++.+||++++++++|||||||+..++.+++.+++.+|+.++++
T Consensus 219 ------~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 292 (455)
T PLN02152 219 ------IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRP 292 (455)
T ss_pred ------CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCC
Confidence 26999999975321 00 00 0 123457999999998889999999999999999999999999999999
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCC
Q 011396 311 FLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGV 390 (487)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~Gv 390 (487)
|||++..+.... ............+|++|.++.+.. .++.+|+||.+||+|++|++||||||+||++||+++||
T Consensus 293 flWv~r~~~~~~-----~~~~~~~~~~~~~~~~f~e~~~~~-g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~Gv 366 (455)
T PLN02152 293 FLWVITDKLNRE-----AKIEGEEETEIEKIAGFRHELEEV-GMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGV 366 (455)
T ss_pred eEEEEecCcccc-----cccccccccccccchhHHHhccCC-eEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCC
Confidence 999998632100 000000000113468888777654 46669999999999999999999999999999999999
Q ss_pred ceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHH
Q 011396 391 PIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTK 470 (487)
Q Consensus 391 P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~ 470 (487)
|||++|+++||+.||+++++++|+|+.+....++.+++++|+++|+++|.| ++..||+||+++++.++++.++||||++
T Consensus 367 P~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~ 445 (455)
T PLN02152 367 PVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDK 445 (455)
T ss_pred CEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 999999999999999999986688888754333347999999999999974 4578999999999999999999999999
Q ss_pred HHHHHHHHH
Q 011396 471 SLAQVAQKW 479 (487)
Q Consensus 471 ~~~~~~~~~ 479 (487)
++++|++++
T Consensus 446 nl~~li~~i 454 (455)
T PLN02152 446 NVEAFVKTL 454 (455)
T ss_pred HHHHHHHHh
Confidence 999999986
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.9e-62 Score=493.59 Aligned_cols=448 Identities=35% Similarity=0.641 Sum_probs=332.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCC---CEEEEEeCCCCCCCCCCCchhhhhhhcC---CCCceEEeCCCCCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHN---FLVTIFIPTIDDGTGSSMEPQRQVLESL---PTSISTIFLPPVSFD 83 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G---H~Vt~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~ 83 (487)
+++||+++|+|++||++||+.||+.|+.+ | +.||++++..+. .. ......... ..++++..+|+....
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~---~~--~~~~~~~~~~~~~~~i~~~~lp~~~~p 75 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPF---AP--QADAFLKSLIASEPRIRLVTLPEVQDP 75 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCc---ch--hhhHHHhhcccCCCCeEEEECCCCCCC
Confidence 45799999999999999999999999887 8 357777765411 00 001111111 125899999865311
Q ss_pred CCCCc-h-hhHHHHHHHHHHhHHHHHHHHHHHhcC-----C-CceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHH
Q 011396 84 DLPDD-V-RMETRITLTLARSLSSLRDALKVLAES-----T-RLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSL 155 (487)
Q Consensus 84 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~-~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~ 155 (487)
.-.+. . .....+...+....+.+++.++++..+ . +++|||+|.++.|+..+|+++|||+++|+++++..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~ 155 (475)
T PLN02167 76 PPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGM 155 (475)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHH
Confidence 00000 1 111234444555666677777766432 1 35999999999999999999999999999999999998
Q ss_pred HhhccccccccccC--CCCCCCcccCCCC-CccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHH
Q 011396 156 IFHLPELDVKFSCE--YRDVPEPVQLPGC-VPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFK 232 (487)
Q Consensus 156 ~~~~~~~~~~~~~~--~~~~~~~~~~pg~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 232 (487)
+.+.+........+ ......++.+||+ .+++..+++..+++.. .+..+........+++++++|||+++|+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 156 MKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 88765432221101 0011133457888 3577777775443321 23344455566778899999999999999999
Q ss_pred HHhcCCCCCCCCCeeecccCcCCCCCCC-C-CCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCc
Q 011396 233 ALMEGDSSFKPPPVYPVGPLVQTGSTNE-T-NNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQR 310 (487)
Q Consensus 233 ~~~~~~~~~~~p~~~~vGp~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 310 (487)
++..... ..|++++|||+........ . .+..+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++++
T Consensus 234 ~l~~~~~--~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 234 YFSRLPE--NYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHhhcc--cCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 9865311 2368999999976432110 1 0112367999999998899999999999888999999999999999999
Q ss_pred eEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCC
Q 011396 311 FLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGV 390 (487)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~Gv 390 (487)
|||+++.... ........+|++|.++++.++ ++++|+||.+||+|++|++|||||||||++||+++||
T Consensus 312 flw~~~~~~~-----------~~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 312 FLWSIRTNPA-----------EYASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred EEEEEecCcc-----------cccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 9999985321 000112358899998888766 5559999999999999999999999999999999999
Q ss_pred ceeccccccccchhhHh-hhhhccceEEeeec---C-CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCC
Q 011396 391 PIIAWPLYAEQKMNAVL-LIDDLKVSFRVKVN---E-NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPD 465 (487)
Q Consensus 391 P~l~~P~~~DQ~~na~~-v~~~~G~G~~l~~~---~-~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~ 465 (487)
|||++|+++||+.||++ +++ +|+|+.+... + ++.+++++|+++|+++|.++ +.||+||+++++.+++++++|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~g 456 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDG 456 (475)
T ss_pred CEEeccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999986 566 9999998642 1 12479999999999999763 589999999999999999999
Q ss_pred CChHHHHHHHHHHHHhh
Q 011396 466 GSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 466 g~~~~~~~~~~~~~~~~ 482 (487)
|||++++++|++++++.
T Consensus 457 GsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 457 GSSFVAVKRFIDDLLGD 473 (475)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.9e-61 Score=489.21 Aligned_cols=435 Identities=31% Similarity=0.498 Sum_probs=326.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCCCCCCchhhhhhhc-CCCCceEEeCCCCCCCCCC
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTIDDGTGSSMEPQRQVLES-LPTSISTIFLPPVSFDDLP 86 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 86 (487)
..+.||+++|+|++||++|++.||+.|++++ ||+|||++++.+.. .+... .+.++.++.+++...++..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~---------~i~~~~~~~gi~fv~lp~~~p~~~~ 78 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLG---------LIGSDPKPDNIRFATIPNVIPSELV 78 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHh---------HhhccCCCCCEEEEECCCCCCCccc
Confidence 4578999999999999999999999997643 99999999987321 11110 0236888888853212222
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccc
Q 011396 87 DDVRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKF 166 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
...+....+........+.+++.++++. .++||||+|.++.|+..+|+++|||++.++++++..++.+.+.+......
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~ 156 (459)
T PLN02448 79 RAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNG 156 (459)
T ss_pred cccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhcc
Confidence 1211111122222234455555555442 46899999999999999999999999999999998888887765432211
Q ss_pred --ccCCCC-CCC-cccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCC
Q 011396 167 --SCEYRD-VPE-PVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFK 242 (487)
Q Consensus 167 --~~~~~~-~~~-~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 242 (487)
+..... ... ...+|+++++...+++..+.+.....+..+........++.++++|||++||+.+.+++.... .
T Consensus 157 ~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~---~ 233 (459)
T PLN02448 157 HFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF---P 233 (459)
T ss_pred CCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc---C
Confidence 111000 011 113688777777777765543333334555566666677889999999999999999987632 2
Q ss_pred CCCeeecccCcCCCCCC---CC--CCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeC
Q 011396 243 PPPVYPVGPLVQTGSTN---ET--NNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRS 317 (487)
Q Consensus 243 ~p~~~~vGp~~~~~~~~---~~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 317 (487)
+++++|||+.+..... .. ....+.++.+|++.++++++|||||||+.....+++.+++.+|+.++.+|||++..
T Consensus 234 -~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 234 -FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred -CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 3799999997642111 00 00123478899999988999999999998888999999999999999999998764
Q ss_pred CccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceecccc
Q 011396 318 PHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 397 (487)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~ 397 (487)
.. .++.++.+ .|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+
T Consensus 313 ~~----------------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~ 369 (459)
T PLN02448 313 EA----------------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPL 369 (459)
T ss_pred ch----------------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccc
Confidence 21 12333332 36777799999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhhhhccceEEeeec--CCCCcCHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 011396 398 YAEQKMNAVLLIDDLKVSFRVKVN--ENGLVGREDIANYAKGLIQGE--EGKLLRSKMRALKDAAANALSPDGSSTKSLA 473 (487)
Q Consensus 398 ~~DQ~~na~~v~~~~G~G~~l~~~--~~~~~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~ 473 (487)
++||+.||+++++.+|+|+.+... +++.+++++|+++|+++|.|+ +|++||+||+++++.+++++.+||||+++++
T Consensus 370 ~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~ 449 (459)
T PLN02448 370 FWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLD 449 (459)
T ss_pred cccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999857999988632 123479999999999999863 5889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 011396 474 QVAQKWKN 481 (487)
Q Consensus 474 ~~~~~~~~ 481 (487)
+|++++++
T Consensus 450 ~~v~~~~~ 457 (459)
T PLN02448 450 AFIRDISQ 457 (459)
T ss_pred HHHHHHhc
Confidence 99999874
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-45 Score=376.14 Aligned_cols=386 Identities=18% Similarity=0.209 Sum_probs=255.8
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCC----
Q 011396 12 AHVAMV-PTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLP---- 86 (487)
Q Consensus 12 ~~Il~~-~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---- 86 (487)
.+|+++ |.++.+|..-+.+|+++|++| ||+||++++..... .. . .. ..++..+.++... +...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~-~~---~----~~--~~~~~~i~~~~~~-~~~~~~~~ 88 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVY-YA---S----HL--CGNITEIDASLSV-EYFKKLVK 88 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEecccccc-cc---c----CC--CCCEEEEEcCCCh-HHHHHHHh
Confidence 457755 889999999999999999998 99999998753000 00 0 00 1234444432110 0000
Q ss_pred --Cchh---------hH-HHHHHH-HHHhHHHH-HHHHHHHhc--CCCceEEEeCCCcchHHHHHHHh-CCCeEEEecch
Q 011396 87 --DDVR---------ME-TRITLT-LARSLSSL-RDALKVLAE--STRLVALVVDIFGSAAFDVANEF-GVPVYIFFTTT 149 (487)
Q Consensus 87 --~~~~---------~~-~~~~~~-~~~~~~~~-~~~l~~~~~--~~~pD~vI~D~~~~~~~~~A~~l-gIP~v~~~~~~ 149 (487)
..++ .. ...... ...+...+ ...+.++++ +.++|+||+|.+..|+..+|+.+ ++|.|.++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 89 SSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0000 00 000000 10111111 112233344 56899999999889999999999 99987776654
Q ss_pred HHHHHHHhhccccccccccCCCCCCCcccCCCCCccCcCCCCCC--ccccchHHHHHHHHH---------Hhhh-hcccE
Q 011396 150 AMVLSLIFHLPELDVKFSCEYRDVPEPVQLPGCVPINGRDFADP--FQQRKNEAYRIFLSF---------SKQY-LVAAG 217 (487)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~--~~~r~~~~~~~~~~~---------~~~~-~~~~~ 217 (487)
......... . . .+. .|+|.|.....+... +++|..+.+...... ...+ ++..+
T Consensus 169 ~~~~~~~~~-g----g---------~p~-~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~ 233 (507)
T PHA03392 169 GLAENFETM-G----A---------VSR-HPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFG 233 (507)
T ss_pred CchhHHHhh-c----c---------CCC-CCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 332111000 0 0 011 155666555555443 477766653221100 0001 11111
Q ss_pred EEEcchhhhchHHHHHHhcCCCCCC-----CCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCC-
Q 011396 218 IMVNSFMDLETGAFKALMEGDSSFK-----PPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGT- 291 (487)
Q Consensus 218 ~l~~s~~~le~~~~~~~~~~~~~~~-----~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~- 291 (487)
.-.+++.++.......+.+.++.++ .|++++|||+..+.....+ .++++.+|++.++ +++|||||||+..
T Consensus 234 ~~~~~~~~l~~~~~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~~~~---l~~~l~~fl~~~~-~g~V~vS~GS~~~~ 309 (507)
T PHA03392 234 PDTPTIRELRNRVQLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQP---LDDYLEEFLNNST-NGVVYVSFGSSIDT 309 (507)
T ss_pred CCCCCHHHHHhCCcEEEEecCccccCCCCCCCCeeeecccccCCCCCCC---CCHHHHHHHhcCC-CcEEEEECCCCCcC
Confidence 0012233333333333333333222 2589999999764322222 6889999999864 5799999999753
Q ss_pred --CCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccc
Q 011396 292 --LSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGS 369 (487)
Q Consensus 292 --~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~ 369 (487)
.+.+.+..++++++..+.+|||+++.... . ..+| +|+.+.+|+||.+||+|+.
T Consensus 310 ~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~--------------~--~~~p---------~Nv~i~~w~Pq~~lL~hp~ 364 (507)
T PHA03392 310 NDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE--------------A--INLP---------ANVLTQKWFPQRAVLKHKN 364 (507)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCCcC--------------c--ccCC---------CceEEecCCCHHHHhcCCC
Confidence 56788999999999999999999885322 0 1233 4899999999999999999
Q ss_pred cccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHH
Q 011396 370 TGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRS 449 (487)
Q Consensus 370 ~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~ 449 (487)
|++||||||.||++||+++|||||++|+++||+.||+|+++ +|+|+.+++.+ ++.++|.++|+++++| ++||+
T Consensus 365 v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~---~t~~~l~~ai~~vl~~---~~y~~ 437 (507)
T PHA03392 365 VKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVT---VSAAQLVLAIVDVIEN---PKYRK 437 (507)
T ss_pred CCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCC---cCHHHHHHHHHHHhCC---HHHHH
Confidence 99999999999999999999999999999999999999999 99999999887 9999999999999999 99999
Q ss_pred HHHHHHHHHHh
Q 011396 450 KMRALKDAAAN 460 (487)
Q Consensus 450 ~a~~l~~~~~~ 460 (487)
||+++++.+++
T Consensus 438 ~a~~ls~~~~~ 448 (507)
T PHA03392 438 NLKELRHLIRH 448 (507)
T ss_pred HHHHHHHHHHh
Confidence 99999999996
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=9.4e-47 Score=391.76 Aligned_cols=399 Identities=23% Similarity=0.333 Sum_probs=226.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC-CCCCCchhh
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF-DDLPDDVRM 91 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 91 (487)
+|++.| ++.||+.++.+|+++|++| ||+||++++.. . .......+..+++..++.... .........
T Consensus 2 kvLv~p-~~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (500)
T PF00201_consen 2 KVLVFP-MAYSHFIFMRPLAEELAER-GHNVTVLTPSP---------S-SSLNPSKPSNIRFETYPDPYPEEEFEEIFPE 69 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHH---------H-HT------S-CCEEEE-----TT------TT
T ss_pred EEEEeC-CCcCHHHHHHHHHHHHHhc-CCceEEEEeec---------c-cccccccccceeeEEEcCCcchHHHhhhhHH
Confidence 577887 4889999999999999999 99999998754 1 111111123444444432211 111111110
Q ss_pred -HH----------HHHHHH---HHhHHHHHHHH---------HHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecc
Q 011396 92 -ET----------RITLTL---ARSLSSLRDAL---------KVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 92 -~~----------~~~~~~---~~~~~~~~~~l---------~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
.. .....+ ........... .+.+++.++|++|+|.+..|+..+|+.++||.+.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 70 FISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 00 011111 00011011100 01123348999999999999999999999997653222
Q ss_pred hHHHHHHHhhccccccccccCCCCCCCcccCCCCCccCcCCCCCC--ccccchHHHHHHHH-H-Hhhhhcc---c-EEEE
Q 011396 149 TAMVLSLIFHLPELDVKFSCEYRDVPEPVQLPGCVPINGRDFADP--FQQRKNEAYRIFLS-F-SKQYLVA---A-GIMV 220 (487)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~--~~~r~~~~~~~~~~-~-~~~~~~~---~-~~l~ 220 (487)
.+ .+..... .. ..+ ..|+|.|.....++.. +++|..+.+..+.. . ....... . .-..
T Consensus 150 ~~--------~~~~~~~----~~--g~p-~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (500)
T PF00201_consen 150 TP--------MYDLSSF----SG--GVP-SPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYF 214 (500)
T ss_dssp CS--------CSCCTCC----TS--CCC-TSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEES
T ss_pred cc--------cchhhhh----cc--CCC-CChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhc
Confidence 11 0000000 00 111 1267777666666544 36766555433321 1 1111111 0 1111
Q ss_pred ---cchhhhchHHHHHHhcCCCCCCC-----CCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCC
Q 011396 221 ---NSFMDLETGAFKALMEGDSSFKP-----PPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTL 292 (487)
Q Consensus 221 ---~s~~~le~~~~~~~~~~~~~~~~-----p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~ 292 (487)
.+..++....+..+.+.++.+++ |++++||++......+ .+.++..|++...++++|||||||....
T Consensus 215 ~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~~-----l~~~~~~~~~~~~~~~vv~vsfGs~~~~ 289 (500)
T PF00201_consen 215 GFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAKP-----LPEELWNFLDSSGKKGVVYVSFGSIVSS 289 (500)
T ss_dssp S-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S----T-----CHHHHHHHTSTTTTTEEEEEE-TSSSTT
T ss_pred ccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccccc-----cccccchhhhccCCCCEEEEecCcccch
Confidence 12223333344444455554553 4789999987665433 7788999998855678999999998654
Q ss_pred CH-HHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccc
Q 011396 293 SP-EQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTG 371 (487)
Q Consensus 293 ~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~ 371 (487)
.+ +.+..+++++++++++|||++..... ..+| +|+.+.+|+||.+||+|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~~~-----------------~~l~---------~n~~~~~W~PQ~~lL~hp~v~ 343 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGEPP-----------------ENLP---------KNVLIVKWLPQNDLLAHPRVK 343 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCSHG-----------------CHHH---------TTEEEESS--HHHHHTSTTEE
T ss_pred hHHHHHHHHHHHHhhCCCccccccccccc-----------------cccc---------ceEEEeccccchhhhhcccce
Confidence 44 44888999999999999999987432 1223 488999999999999999999
Q ss_pred cccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHH
Q 011396 372 GFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKM 451 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a 451 (487)
+||||||+||++||+++|||||++|+++||+.||+++++ .|+|+.++..+ +|.++|.++|+++|+| ++|++||
T Consensus 344 ~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~vl~~---~~y~~~a 416 (500)
T PF00201_consen 344 LFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKND---LTEEELRAAIREVLEN---PSYKENA 416 (500)
T ss_dssp EEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC----SHHHHHHHHHHHHHS---HHHHHHH
T ss_pred eeeeccccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecC---CcHHHHHHHHHHHHhh---hHHHHHH
Confidence 999999999999999999999999999999999999999 99999999988 9999999999999999 8999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 452 RALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 452 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
+++++.+++. .....++++.+++..
T Consensus 417 ~~ls~~~~~~------p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 417 KRLSSLFRDR------PISPLERAVWWIEYV 441 (500)
T ss_dssp HHHHHTTT-----------------------
T ss_pred HHHHHHHhcC------CCCHHHHHHHHHHHH
Confidence 9999999862 223456666666543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.1e-41 Score=337.50 Aligned_cols=374 Identities=18% Similarity=0.252 Sum_probs=237.6
Q ss_pred cCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCC-CCCCc-h-hhHHH
Q 011396 18 PTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFD-DLPDD-V-RMETR 94 (487)
Q Consensus 18 ~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-~-~~~~~ 94 (487)
.+|++||++|++.||++|+++ ||+|+|++++. ...... ..++.+..++..... +..+. + .....
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~----------~~~~v~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVAR-GHRVTYATTEE----------FAERVE--AAGAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCccccccccHHHHHHHHhC-CCeEEEEeCHH----------HHHHHH--HcCCEEEecCCcCccccccccccCcchHH
Confidence 578999999999999999888 99999999986 222233 235666666532111 11111 0 11111
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccccCCCCCC
Q 011396 95 ITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCEYRDVP 174 (487)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (487)
+...+........+.+.++++..+||+||+|.+++++..+|+.+|||+|.+.+.+... ...+..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~------------ 132 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEM------------ 132 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccc------------
Confidence 2222222222222233444566799999999988999999999999999876543211 000000
Q ss_pred CcccCCCCCccCcCCCC-CCccccchHHHHHHHHHHhhhhcccEEEEcchhhh--------chHHHHHHhcCCCCCCCCC
Q 011396 175 EPVQLPGCVPINGRDFA-DPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDL--------ETGAFKALMEGDSSFKPPP 245 (487)
Q Consensus 175 ~~~~~pg~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~l--------e~~~~~~~~~~~~~~~~p~ 245 (487)
.| +.....+. .....+. ...+.......++..++-......+ -..++..+.+....++ ++
T Consensus 133 ----~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~ 201 (392)
T TIGR01426 133 ----VS---PAGEGSAEEGAIAERG---LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFD-DS 201 (392)
T ss_pred ----cc---ccchhhhhhhccccch---hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccC-CC
Confidence 00 00000000 0000000 1111111111111111100000000 0011122222212222 47
Q ss_pred eeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccc
Q 011396 246 VYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANA 325 (487)
Q Consensus 246 ~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (487)
++++||+....... ..|.....++++||||+||+.....+.+..++++++..+.+++|..+.....
T Consensus 202 ~~~~Gp~~~~~~~~----------~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~---- 267 (392)
T TIGR01426 202 FTFVGPCIGDRKED----------GSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP---- 267 (392)
T ss_pred eEEECCCCCCcccc----------CCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh----
Confidence 99999987643211 1366665677899999999866666788889999999999999988754220
Q ss_pred cccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccccccccchhh
Q 011396 326 TYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNA 405 (487)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na 405 (487)
+....+ .+|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+.||
T Consensus 268 ---------~~~~~~---------~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a 327 (392)
T TIGR01426 268 ---------ADLGEL---------PPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTA 327 (392)
T ss_pred ---------hHhccC---------CCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHH
Confidence 001111 34788999999999999999 9999999999999999999999999999999999
Q ss_pred HhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 011396 406 VLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 406 ~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
+++++ +|+|+.+...+ +++++|.++|+++|.| ++|+++++++++.+++ .+ +...+++.+.
T Consensus 328 ~~l~~-~g~g~~l~~~~---~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~~---~~-~~~~aa~~i~ 387 (392)
T TIGR01426 328 RRIAE-LGLGRHLPPEE---VTAEKLREAVLAVLSD---PRYAERLRKMRAEIRE---AG-GARRAADEIE 387 (392)
T ss_pred HHHHH-CCCEEEecccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH---cC-CHHHHHHHHH
Confidence 99999 99999998777 9999999999999999 8999999999999986 33 4444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=5.3e-41 Score=339.41 Aligned_cols=368 Identities=16% Similarity=0.127 Sum_probs=231.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCC---C-CCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFD---D-LPD 87 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~-~~~ 87 (487)
+||+|++.|+.||++|+++||++|++| ||+|+|++++. . ..... ..++.+..++..... . ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~---------~-~~~v~--~~G~~~~~~~~~~~~~~~~~~~~ 67 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPE---------F-ADLVE--AAGLEFVPVGGDPDELLASPERN 67 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHh---------H-HHHHH--HcCCceeeCCCCHHHHHhhhhhc
Confidence 489999999999999999999999988 99999999986 1 22222 245666666542100 0 000
Q ss_pred ------chhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccc
Q 011396 88 ------DVRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPE 161 (487)
Q Consensus 88 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 161 (487)
...........+....+...+.+.+..++.+||+||+|.+.+++..+|+++|||++.+++++....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~----- 142 (401)
T cd03784 68 AGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF----- 142 (401)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----
Confidence 001111122222223233323333344567999999999899999999999999999887643220000
Q ss_pred cccccccCCCCCCCcccCCCCCccCcCCCCCCcccc-chH-HHHHHHHHHhhhhcccEEEEcc-----hhhhchHHHHHH
Q 011396 162 LDVKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQR-KNE-AYRIFLSFSKQYLVAAGIMVNS-----FMDLETGAFKAL 234 (487)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r-~~~-~~~~~~~~~~~~~~~~~~l~~s-----~~~le~~~~~~~ 234 (487)
+ | +. .......... ... ............++..++-... .......++..+
T Consensus 143 --------------~---~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 143 --------------P---P---PL--GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred --------------C---C---cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc
Confidence 0 0 00 0000000000 000 0001111111122222210000 000001111111
Q ss_pred hcCCCCCCCCCeeecc-cCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCC-HHHHHHHHHHHHhcCCceE
Q 011396 235 MEGDSSFKPPPVYPVG-PLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLS-PEQLNELALGLEMSGQRFL 312 (487)
Q Consensus 235 ~~~~~~~~~p~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i 312 (487)
....+.++ +...++| ++..... ... .+.++..|++. .+++|||++||+.... .+....++++++..+.+++
T Consensus 201 ~~~~~~~~-~~~~~~g~~~~~~~~-~~~---~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i 273 (401)
T cd03784 201 LPPPPDWP-RFDLVTGYGFRDVPY-NGP---PPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAI 273 (401)
T ss_pred CCCCCCcc-ccCcEeCCCCCCCCC-CCC---CCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEE
Confidence 11111111 2445554 3322221 111 45667778866 3569999999986644 4567889999999999999
Q ss_pred EEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCce
Q 011396 313 WVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPI 392 (487)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~ 392 (487)
|+.+.... .. .. ..+|+.+.+|+||.++|++++ +||||||+||++|++++|||+
T Consensus 274 ~~~g~~~~--------------~~-~~---------~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~ 327 (401)
T cd03784 274 LSLGWGGL--------------GA-ED---------LPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQ 327 (401)
T ss_pred EEccCccc--------------cc-cC---------CCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCE
Confidence 99887532 00 11 234899999999999999998 999999999999999999999
Q ss_pred eccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 393 IAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 393 l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
|++|+..||+.||+++++ +|+|+.++..+ +++++|.++|++++++ .++++++++++.+++
T Consensus 328 v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~~---~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~ 387 (401)
T cd03784 328 LVVPFFGDQPFWAARVAE-LGAGPALDPRE---LTAERLAAALRRLLDP----PSRRRAAALLRRIRE 387 (401)
T ss_pred EeeCCCCCcHHHHHHHHH-CCCCCCCCccc---CCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh
Confidence 999999999999999999 99999998876 8999999999999985 466677777777764
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.6e-39 Score=333.55 Aligned_cols=395 Identities=29% Similarity=0.439 Sum_probs=252.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC-CCCCCch
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF-DDLPDDV 89 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 89 (487)
..|++++++|++||++|++.||+.|+++ ||+||++.+......... ........ .+.....+.... +.++..+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSK----SSKSKSIK-KINPPPFEFLTIPDGLPEGW 78 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCC----cccceeee-eeecChHHhhhhhhhhccch
Confidence 4688999999999999999999999998 999999998762211100 00000000 000001111000 1233333
Q ss_pred hhH-----HHHHHHHHHhHHHHHHHHHHHhc--CCCceEEEeCCCcchHHHHHHHhC-CCeEEEecchHHHHHHHhhccc
Q 011396 90 RME-----TRITLTLARSLSSLRDALKVLAE--STRLVALVVDIFGSAAFDVANEFG-VPVYIFFTTTAMVLSLIFHLPE 161 (487)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~l~~~~~--~~~pD~vI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~ 161 (487)
... .........+...+++.+..+.. ..++|++|+|.+..|...+|.... |+..++.+.++.......+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 79 EDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 211 11122333344444444433322 224999999997667776776664 9988888887777555444332
Q ss_pred cccccccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHH--------------HH----hhh----hcccEEE
Q 011396 162 LDVKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLS--------------FS----KQY----LVAAGIM 219 (487)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~--------------~~----~~~----~~~~~~l 219 (487)
. .+|........ ....+.++..+....... .. ... .....++
T Consensus 159 ~---------------~~p~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 159 S---------------YVPSPFSLSSG-DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred c---------------ccCcccCcccc-ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 1 01111000000 111222332221111100 00 000 1111333
Q ss_pred Ecc-hhhhchHHHHHHhcCCCCCCCCCeeecccCcCCCCCCCCCCccccccccccccCCCC--cEEEEEecCCC---CCC
Q 011396 220 VNS-FMDLETGAFKALMEGDSSFKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSE--SVLFVCFGSGG---TLS 293 (487)
Q Consensus 220 ~~s-~~~le~~~~~~~~~~~~~~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~---~~~ 293 (487)
.++ +..++......+.+.. ..|++++|||+....... ......+|++..+.. ++|||||||+. .++
T Consensus 223 ~~~~~~~ln~~~~~~~~~~~---~~~~v~~IG~l~~~~~~~-----~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp 294 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFEPRP---LLPKVIPIGPLHVKDSKQ-----KSPLPLEWLDILDESRHSVVYISFGSMVNSADLP 294 (496)
T ss_pred hcCeEEEEccCcccCCCCCC---CCCCceEECcEEecCccc-----cccccHHHHHHHhhccCCeEEEECCcccccccCC
Confidence 444 5555555333332210 236899999998883322 111455677665554 89999999997 789
Q ss_pred HHHHHHHHHHHHhc-CCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCcccc-ccccccc
Q 011396 294 PEQLNELALGLEMS-GQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQV-LRHGSTG 371 (487)
Q Consensus 294 ~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~-L~~~~~~ 371 (487)
.++...++.+++.+ +..|+|++..... ..+++++.++ ...||+..+|+||.++ |+|++++
T Consensus 295 ~~~~~~l~~~l~~~~~~~FiW~~~~~~~-----------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~ 356 (496)
T KOG1192|consen 295 EEQKKELAKALESLQGVTFLWKYRPDDS-----------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVG 356 (496)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCCcc-----------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCc
Confidence 99999999999999 8889999997533 1133333322 3457888899999988 6999999
Q ss_pred cccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHH
Q 011396 372 GFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKM 451 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a 451 (487)
+||||||+|||+|++++|||||++|+++||+.||+++++ .|.|..+.+.+ ++.+++.+++.+++.+ ++|++++
T Consensus 357 ~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~---~~~~~~~~~~~~il~~---~~y~~~~ 429 (496)
T KOG1192|consen 357 GFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD---LVSEELLEAIKEILEN---EEYKEAA 429 (496)
T ss_pred EEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh---cCcHHHHHHHHHHHcC---hHHHHHH
Confidence 999999999999999999999999999999999999999 88888887776 7776799999999999 9999999
Q ss_pred HHHHHHHHh
Q 011396 452 RALKDAAAN 460 (487)
Q Consensus 452 ~~l~~~~~~ 460 (487)
+++++..++
T Consensus 430 ~~l~~~~~~ 438 (496)
T KOG1192|consen 430 KRLSEILRD 438 (496)
T ss_pred HHHHHHHHc
Confidence 999998874
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-38 Score=312.91 Aligned_cols=381 Identities=18% Similarity=0.225 Sum_probs=230.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC-CCCCCch
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF-DDLPDDV 89 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~ 89 (487)
++||+++..|++||++|.++||++|.++ ||+|+|++++. ..+.+.. . ++.|...+..+. .....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~---------~~~~ve~-a--g~~f~~~~~~~~~~~~~~~~ 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGK---------FKEFVEA-A--GLAFVAYPIRDSELATEDGK 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHH---------HHHHHHH-h--CcceeeccccCChhhhhhhh
Confidence 3579999999999999999999999887 99999999987 3333332 1 233444433211 1111111
Q ss_pred hhHHH----HHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHh-hcccccc
Q 011396 90 RMETR----ITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIF-HLPELDV 164 (487)
Q Consensus 90 ~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~-~~~~~~~ 164 (487)
..... ....+......+.+.+. +..||+++.|.....+ .+++..++|++.......+.+.... +.+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLELLR----ELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGI 142 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHHHHH----hcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccc
Confidence 11001 11222222223333333 4489999999855554 8888999998765444322211111 1000000
Q ss_pred ccccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccE--EEEcch-------hhhchHHHHHHh
Q 011396 165 KFSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAG--IMVNSF-------MDLETGAFKALM 235 (487)
Q Consensus 165 ~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~l~~s~-------~~le~~~~~~~~ 235 (487)
.+....+.+ ++......+....+. . . .....+...+ ...+.+ ..+...+.+...
T Consensus 143 ---------~~~~~~~~~-~~~~~~~~~~~~~~~----~-~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (406)
T COG1819 143 ---------AGKLPIPLY-PLPPRLVRPLIFARS----W-L--PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLF 205 (406)
T ss_pred ---------ccccccccc-ccChhhccccccchh----h-h--hhhhhhhhccccccccchHHHhcCCCCcccccccccc
Confidence 000001111 000000000001110 0 0 0000010000 000000 000000000000
Q ss_pred cCCCCCCCC-CeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 011396 236 EGDSSFKPP-PVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWV 314 (487)
Q Consensus 236 ~~~~~~~~p-~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (487)
... ...| ...++||+... ...++..|.. .++++||+|+||.... .+++..+++++..++.++|..
T Consensus 206 ~~~--~~~p~~~~~~~~~~~~---------~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~ 271 (406)
T COG1819 206 PPG--DRLPFIGPYIGPLLGE---------AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVS 271 (406)
T ss_pred CCC--CCCCCCcCcccccccc---------ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEe
Confidence 000 0111 22344444333 2233334433 3567999999998766 888999999999999999998
Q ss_pred EeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceec
Q 011396 315 VRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIA 394 (487)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~ 394 (487)
++. .. ....++|. |+.+.+|+||..+|++++ +||||||+|||+|||++|||+|+
T Consensus 272 ~~~-~~--------------~~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 272 LGG-AR--------------DTLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVV 325 (406)
T ss_pred ccc-cc--------------cccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEE
Confidence 876 32 11234454 888999999999999999 99999999999999999999999
Q ss_pred cccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 011396 395 WPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQ 474 (487)
Q Consensus 395 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~ 474 (487)
+|...||+.||.|+++ +|+|+.+..++ ++.+.++++|.++|+| +.|+++++++++.+++ ++| .+.+.+
T Consensus 326 ~P~~~DQ~~nA~rve~-~G~G~~l~~~~---l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~~---~~g--~~~~a~ 393 (406)
T COG1819 326 IPDGADQPLNAERVEE-LGAGIALPFEE---LTEERLRAAVNEVLAD---DSYRRAAERLAEEFKE---EDG--PAKAAD 393 (406)
T ss_pred ecCCcchhHHHHHHHH-cCCceecCccc---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhh---ccc--HHHHHH
Confidence 9999999999999999 99999999988 9999999999999999 9999999999999997 455 344555
Q ss_pred HHHH
Q 011396 475 VAQK 478 (487)
Q Consensus 475 ~~~~ 478 (487)
++++
T Consensus 394 ~le~ 397 (406)
T COG1819 394 LLEE 397 (406)
T ss_pred HHHH
Confidence 5554
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=7.3e-27 Score=229.88 Aligned_cols=323 Identities=15% Similarity=0.140 Sum_probs=197.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCC--c
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPD--D 88 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~ 88 (487)
|++|++++.|+.||++|.+++|++|.++ ||+|+|+++.. . ........ .++.+..++... +.+ .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~----~----~e~~l~~~--~g~~~~~~~~~~---l~~~~~ 66 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQ----G----IEKTIIEK--ENIPYYSISSGK---LRRYFD 66 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCC----c----cccccCcc--cCCcEEEEeccC---cCCCch
Confidence 3479999999999999999999999876 99999999776 1 11112221 246666665322 222 1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcc--hHHHHHHHhCCCeEEEecchHHHHHHHhhcccccccc
Q 011396 89 VRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGS--AAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKF 166 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~--~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 166 (487)
+.........+ ...-..... +++.+||+||+..... .+..+|+.+++|+++.-..
T Consensus 67 ~~~~~~~~~~~-~~~~~~~~i----~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n------------------ 123 (352)
T PRK12446 67 LKNIKDPFLVM-KGVMDAYVR----IRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD------------------ 123 (352)
T ss_pred HHHHHHHHHHH-HHHHHHHHH----HHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC------------------
Confidence 11111111111 111112222 3455999999875333 3567999999998763111
Q ss_pred ccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCe
Q 011396 167 SCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPV 246 (487)
Q Consensus 167 ~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~ 246 (487)
.+||+. . +...+....++.+|.+... .+ +..++
T Consensus 124 -----------~~~g~~-------------------n------r~~~~~a~~v~~~f~~~~~----~~-------~~~k~ 156 (352)
T PRK12446 124 -----------MTPGLA-------------------N------KIALRFASKIFVTFEEAAK----HL-------PKEKV 156 (352)
T ss_pred -----------CCccHH-------------------H------HHHHHhhCEEEEEccchhh----hC-------CCCCe
Confidence 123320 0 1111111222334432111 11 11368
Q ss_pred eecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCH-HHHHHHHHHHHhcCCceEEEEeCCccccccc
Q 011396 247 YPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSP-EQLNELALGLEMSGQRFLWVVRSPHERAANA 325 (487)
Q Consensus 247 ~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (487)
.++|+.+...-... ...+....+...+++++|+|..||...... +.+..++..+. .+.+++|++|....
T Consensus 157 ~~tG~Pvr~~~~~~----~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~----- 226 (352)
T PRK12446 157 IYTGSPVREEVLKG----NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL----- 226 (352)
T ss_pred EEECCcCCcccccc----cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH-----
Confidence 89997665543211 111111222333456799999999865443 22334444442 24788888886422
Q ss_pred cccccCCCCCCCCCCchhHHHhhcCCCeeecccC-C-ccccccccccccccccccchhHHHHHhhCCceeccccc-----
Q 011396 326 TYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWS-P-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY----- 398 (487)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-p-q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~----- 398 (487)
+..... ..++.+..|+ + ...+++.+| ++|||||++|+.|++++|+|+|++|+.
T Consensus 227 ----------------~~~~~~--~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 227 ----------------DDSLQN--KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred ----------------HHHHhh--cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 111111 1244455777 4 367899999 999999999999999999999999985
Q ss_pred cccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011396 399 AEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 399 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~ 453 (487)
.||..||..+++ .|+|..+...+ ++++.|.+++.++++|. +.+++++++
T Consensus 287 ~~Q~~Na~~l~~-~g~~~~l~~~~---~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 287 GDQILNAESFER-QGYASVLYEED---VTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred chHHHHHHHHHH-CCCEEEcchhc---CCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 489999999999 99999998777 99999999999999872 345544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=1.1e-23 Score=206.23 Aligned_cols=308 Identities=18% Similarity=0.200 Sum_probs=185.1
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchh
Q 011396 12 AHVAMVPTP-GIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVR 90 (487)
Q Consensus 12 ~~Il~~~~~-~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (487)
|||+|...+ |.||+.+.++||++| | ||+|+|++... ....... .+....++......-....+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGP---------APEFLKP----RFPVREIPGLGPIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCC---------cHHHhcc----ccCEEEccCceEeccCCccc
Confidence 367666655 789999999999999 6 99999999875 2112111 13344444333222111222
Q ss_pred hHHHHHHHH---HHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccc
Q 011396 91 METRITLTL---ARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFS 167 (487)
Q Consensus 91 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
....+.... ......+++ +.+++++.+||+||+|. .+.+..+|+..|||++.+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~--------------- 127 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRR-EIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFL--------------- 127 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHH-HHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcc---------------
Confidence 221121111 111122222 23344566999999996 5556789999999998876653211
Q ss_pred cCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCee
Q 011396 168 CEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVY 247 (487)
Q Consensus 168 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~ 247 (487)
.+.. .++.. +........+.... ....+...+.-++. .... ...++.
T Consensus 128 -----------~~~~------~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~------------~~~~~~ 174 (318)
T PF13528_consen 128 -----------HPNF------WLPWD--QDFGRLIERYIDRY-HFPPADRRLALSFY-PPLP------------PFFRVP 174 (318)
T ss_pred -----------cccC------Ccchh--hhHHHHHHHhhhhc-cCCcccceecCCcc-cccc------------cccccc
Confidence 0000 00000 00000011111000 11222222333332 1100 012455
Q ss_pred ecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcC-CceEEEEeCCcccccccc
Q 011396 248 PVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSG-QRFLWVVRSPHERAANAT 326 (487)
Q Consensus 248 ~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~ 326 (487)
++||+........ -. .+++.|+|++|..... .++++++..+ ..+++. +....
T Consensus 175 ~~~p~~~~~~~~~------------~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------ 227 (318)
T PF13528_consen 175 FVGPIIRPEIREL------------PP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------ 227 (318)
T ss_pred ccCchhccccccc------------CC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc------
Confidence 7888766543221 11 1345899999985332 6667777766 455544 44321
Q ss_pred ccccCCCCCCCCCCchhHHHhhcCCCeeecccC-C-ccccccccccccccccccchhHHHHHhhCCceecccc--ccccc
Q 011396 327 YFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWS-P-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL--YAEQK 402 (487)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-p-q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~--~~DQ~ 402 (487)
.....|+.+..+. + ..++|+.++ ++|+|||.||++|++++|+|+|++|. ..||.
T Consensus 228 --------------------~~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~ 285 (318)
T PF13528_consen 228 --------------------DPRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQE 285 (318)
T ss_pred --------------------cccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHH
Confidence 0123588888876 3 478898898 99999999999999999999999999 67999
Q ss_pred hhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHh
Q 011396 403 MNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGL 438 (487)
Q Consensus 403 ~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~l 438 (487)
.||+++++ +|+|+.++..+ ++++.|+++|+++
T Consensus 286 ~~a~~l~~-~G~~~~~~~~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 286 YNARKLEE-LGLGIVLSQED---LTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHH-CCCeEEccccc---CCHHHHHHHHhcC
Confidence 99999999 99999998877 9999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=6.2e-23 Score=199.61 Aligned_cols=325 Identities=20% Similarity=0.262 Sum_probs=201.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCC-EEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhh
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNF-LVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRM 91 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (487)
+|++...++.||+.|.++|+++|.++ |+ +|.+..+... ......+.. ++.+..++....... ..+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~--------~e~~l~~~~--~~~~~~I~~~~~~~~-~~~~~ 69 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDG--------LEAFLVKQY--GIEFELIPSGGLRRK-GSLKL 69 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccc--------ceeeecccc--CceEEEEeccccccc-CcHHH
Confidence 58889999999999999999999988 99 5777766551 112222221 455666654321111 11111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeC--CCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccccC
Q 011396 92 ETRITLTLARSLSSLRDALKVLAESTRLVALVVD--IFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCE 169 (487)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D--~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (487)
.... ..+....-..+..|+++ +||+||.- +.+..+..+|..+|||+++.
T Consensus 70 ~~~~-~~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih------------------------ 120 (357)
T COG0707 70 LKAP-FKLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIH------------------------ 120 (357)
T ss_pred HHHH-HHHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHHHhCCCCEEEE------------------------
Confidence 1111 22233334445555544 99999985 44455667999999998762
Q ss_pred CCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCeeec
Q 011396 170 YRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVYPV 249 (487)
Q Consensus 170 ~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~v 249 (487)
+...+||+. ++...+....+..+|...+.. +...+++.+
T Consensus 121 -----Eqn~~~G~a-------------------------nk~~~~~a~~V~~~f~~~~~~-----------~~~~~~~~t 159 (357)
T COG0707 121 -----EQNAVPGLA-------------------------NKILSKFAKKVASAFPKLEAG-----------VKPENVVVT 159 (357)
T ss_pred -----ecCCCcchh-------------------------HHHhHHhhceeeecccccccc-----------CCCCceEEe
Confidence 122235531 111122222233344431111 011257888
Q ss_pred c-cCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCH-HHHHHHHHHHHhcCCceEEEEeCCccccccccc
Q 011396 250 G-PLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSP-EQLNELALGLEMSGQRFLWVVRSPHERAANATY 327 (487)
Q Consensus 250 G-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 327 (487)
| |+..+-.. . ..... .. +....+++|+|..||+....- +.+..++..+.. +..+++..+....
T Consensus 160 G~Pvr~~~~~-~----~~~~~-~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~------- 224 (357)
T COG0707 160 GIPVRPEFEE-L----PAAEV-RK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDL------- 224 (357)
T ss_pred cCcccHHhhc-c----chhhh-hh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchH-------
Confidence 8 44333221 1 00111 11 111146799999999755332 333334444433 4677777776532
Q ss_pred cccCCCCCCCCCCchhHHHhhcCCC-eeecccCCc-cccccccccccccccccchhHHHHHhhCCceeccccc----ccc
Q 011396 328 FGIQSMKDPFDFLPKGFLDRTKGVG-LVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY----AEQ 401 (487)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~-v~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~----~DQ 401 (487)
+.........+ +.+..|+.+ ..+++.+| ++||++|++|+.|++++|+|+|.+|+. .||
T Consensus 225 --------------~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q 288 (357)
T COG0707 225 --------------EELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQ 288 (357)
T ss_pred --------------HHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchH
Confidence 34444444445 777788887 88898899 999999999999999999999999984 389
Q ss_pred chhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 402 KMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 402 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
..||..+++ .|.|..++..+ +|.+++.+.|.+++++ .++.+++++..++
T Consensus 289 ~~NA~~l~~-~gaa~~i~~~~---lt~~~l~~~i~~l~~~------~~~l~~m~~~a~~ 337 (357)
T COG0707 289 EYNAKFLEK-AGAALVIRQSE---LTPEKLAELILRLLSN------PEKLKAMAENAKK 337 (357)
T ss_pred HHHHHHHHh-CCCEEEecccc---CCHHHHHHHHHHHhcC------HHHHHHHHHHHHh
Confidence 999999999 99999999988 9999999999999987 3344444444443
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.6e-21 Score=190.59 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=70.6
Q ss_pred CCeeecccCC--ccccccccccccccccccchhHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeecCCCCc
Q 011396 351 VGLVVPSWSP--QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~p--q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
+|+.+.+|.| ..+.|+.++ ++|||||++|++|++++|+|+|++|... ||..||+.+++ +|+|+.++..+ +
T Consensus 229 ~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~---~ 302 (321)
T TIGR00661 229 ENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKE---L 302 (321)
T ss_pred CCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhh---H
Confidence 4788889997 367778888 9999999999999999999999999965 89999999999 99999998765 4
Q ss_pred CHHHHHHHHHHhccC
Q 011396 427 GREDIANYAKGLIQG 441 (487)
Q Consensus 427 ~~~~l~~~i~~ll~~ 441 (487)
++.+++.++++|
T Consensus 303 ---~~~~~~~~~~~~ 314 (321)
T TIGR00661 303 ---RLLEAILDIRNM 314 (321)
T ss_pred ---HHHHHHHhcccc
Confidence 666667677776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=4.5e-18 Score=169.26 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=199.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCc-h
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDD-V 89 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 89 (487)
|++|++...+..||...++.||++|.++ ||+|++++.+. . ....... ..++.++.++..... ..+ .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~----~----~~~~~~~--~~g~~~~~~~~~~~~--~~~~~ 67 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTAR----G----MEARLVP--KAGIEFHFIPSGGLR--RKGSL 67 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCC----c----hhhhccc--cCCCcEEEEeccCcC--CCChH
Confidence 3679999988899999999999999887 99999998754 1 0011111 124555555432111 011 1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCC--cchHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccc
Q 011396 90 RMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIF--GSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFS 167 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
...... ..+......+.+. +++.+||+|++... ...+..+++..++|++.....
T Consensus 68 ~~l~~~-~~~~~~~~~~~~~----ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~------------------- 123 (357)
T PRK00726 68 ANLKAP-FKLLKGVLQARKI----LKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN------------------- 123 (357)
T ss_pred HHHHHH-HHHHHHHHHHHHH----HHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-------------------
Confidence 111111 1112222233333 34559999998862 233446777789998752110
Q ss_pred cCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCee
Q 011396 168 CEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVY 247 (487)
Q Consensus 168 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~ 247 (487)
..++ + ...+. ...++.++..+-..+ .. . ...++.
T Consensus 124 ----------~~~~---------------~----~~r~~-----~~~~d~ii~~~~~~~--------~~-~---~~~~i~ 157 (357)
T PRK00726 124 ----------AVPG---------------L----ANKLL-----ARFAKKVATAFPGAF--------PE-F---FKPKAV 157 (357)
T ss_pred ----------CCcc---------------H----HHHHH-----HHHhchheECchhhh--------hc-c---CCCCEE
Confidence 0011 0 01110 112233333221111 00 0 234788
Q ss_pred ecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHH-HHHHHHHHhcCC--ceEEEEeCCcccccc
Q 011396 248 PVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQL-NELALGLEMSGQ--RFLWVVRSPHERAAN 324 (487)
Q Consensus 248 ~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~-~~~~~al~~~~~--~~i~~~~~~~~~~~~ 324 (487)
++|+.......... . ...-+...++.++|++..|+. ..+.. ..+.+++.+... .++|.+|....
T Consensus 158 vi~n~v~~~~~~~~---~---~~~~~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---- 224 (357)
T PRK00726 158 VTGNPVREEILALA---A---PPARLAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGDL---- 224 (357)
T ss_pred EECCCCChHhhccc---c---hhhhccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH----
Confidence 88865544321110 0 001112122344666655553 22222 223366555443 34455555322
Q ss_pred ccccccCCCCCCCCCCchhHHHhhc-CCCeeecccCCc-cccccccccccccccccchhHHHHHhhCCceecccc----c
Q 011396 325 ATYFGIQSMKDPFDFLPKGFLDRTK-GVGLVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----Y 398 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~----~ 398 (487)
+.+....+ .-++.+.+|+.+ ..+++.++ ++|+|+|.++++||+++|+|+|++|. .
T Consensus 225 -----------------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 225 -----------------EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred -----------------HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 22322222 112677888854 78999999 99999999999999999999999997 4
Q ss_pred cccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 011396 399 AEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQK 478 (487)
Q Consensus 399 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
.+|..|+..+.+ .|.|+.++..+ ++++.|.+++.++++| +.+++++.+-+.+.. +.++..+.++.+.+.
T Consensus 286 ~~~~~~~~~i~~-~~~g~~~~~~~---~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 286 DHQTANARALVD-AGAALLIPQSD---LTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEEL 354 (357)
T ss_pred CcHHHHHHHHHH-CCCEEEEEccc---CCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHH
Confidence 689999999999 99999998776 7899999999999999 777766666555443 455555566555554
Q ss_pred HH
Q 011396 479 WK 480 (487)
Q Consensus 479 ~~ 480 (487)
+.
T Consensus 355 ~~ 356 (357)
T PRK00726 355 AR 356 (357)
T ss_pred hh
Confidence 43
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=4.8e-17 Score=161.44 Aligned_cols=323 Identities=17% Similarity=0.127 Sum_probs=185.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhH
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRME 92 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (487)
+|++...++.||+...+.||+.|.++ ||+|++++... .. ...... ..++.+..++....... ..+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~----~~----~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKR----GL----EARLVP--KAGIPLHTIPVGGLRRK-GSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCC----cc----hhhccc--ccCCceEEEEecCcCCC-ChHHHH
Confidence 58999999999999999999999887 99999998754 10 001111 12355555543211100 011111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCC--cchHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccccCC
Q 011396 93 TRITLTLARSLSSLRDALKVLAESTRLVALVVDIF--GSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCEY 170 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
..... +......+.+.+ ++.+||+|++... ...+..+|...++|++.....
T Consensus 69 ~~~~~-~~~~~~~~~~~i----~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~---------------------- 121 (350)
T cd03785 69 KAPFK-LLKGVLQARKIL----KKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN---------------------- 121 (350)
T ss_pred HHHHH-HHHHHHHHHHHH----HhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC----------------------
Confidence 11111 111222333333 4559999998642 334556888889998752110
Q ss_pred CCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCeeecc
Q 011396 171 RDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVYPVG 250 (487)
Q Consensus 171 ~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~vG 250 (487)
.+++. ...+ ..+.++.++..+-...+. . ...++.++|
T Consensus 122 -------~~~~~-------------------~~~~-----~~~~~~~vi~~s~~~~~~---------~---~~~~~~~i~ 158 (350)
T cd03785 122 -------AVPGL-------------------ANRL-----LARFADRVALSFPETAKY---------F---PKDKAVVTG 158 (350)
T ss_pred -------CCccH-------------------HHHH-----HHHhhCEEEEcchhhhhc---------C---CCCcEEEEC
Confidence 00110 0111 112345555554322211 0 123677787
Q ss_pred cCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCH-HHHHHHHHHHHhcCCceEEEEeCCccccccccccc
Q 011396 251 PLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSP-EQLNELALGLEMSGQRFLWVVRSPHERAANATYFG 329 (487)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 329 (487)
......... .... ...+...+++++|++..|+...... +.+..++..+...+..+++..+....
T Consensus 159 n~v~~~~~~-----~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~--------- 223 (350)
T cd03785 159 NPVREEILA-----LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL--------- 223 (350)
T ss_pred CCCchHHhh-----hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH---------
Confidence 654332111 0001 1222222334466666666432111 22223334443223344555554311
Q ss_pred cCCCCCCCCCCchhHHHhhc--CCCeeecccC-CccccccccccccccccccchhHHHHHhhCCceecccc----ccccc
Q 011396 330 IQSMKDPFDFLPKGFLDRTK--GVGLVVPSWS-PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL----YAEQK 402 (487)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~--~~~v~~~~~~-pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~----~~DQ~ 402 (487)
+.+.+... ..++.+.+|+ +...+|+.++ ++|+++|.+|+.||+++|+|+|+.|. ..+|.
T Consensus 224 ------------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 224 ------------EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred ------------HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 22222222 3578888988 3478899899 99999999999999999999999986 35788
Q ss_pred hhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011396 403 MNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 403 ~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~ 453 (487)
.|+..+.+ .|.|+.++..+ .+.+++.+++.+++.| +..++++.+
T Consensus 290 ~~~~~l~~-~g~g~~v~~~~---~~~~~l~~~i~~ll~~---~~~~~~~~~ 333 (350)
T cd03785 290 ANARALVK-AGAAVLIPQEE---LTPERLAAALLELLSD---PERLKAMAE 333 (350)
T ss_pred HhHHHHHh-CCCEEEEecCC---CCHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 99999999 89999998765 6899999999999988 555544433
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=2.4e-17 Score=164.74 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred cccccccccccccccccchhHHHHHhhCCceecc----cccc---------ccchhhHhhhhhccceEEeeecCCCCcCH
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW----PLYA---------EQKMNAVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~----P~~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
..+++.+| ++|+-+|..|+ |++++|+|+|++ |+.. .|..|+..+++ .++...+...+ +|+
T Consensus 262 ~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~---~~~ 334 (385)
T TIGR00215 262 RKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEE---CTP 334 (385)
T ss_pred HHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCC---CCH
Confidence 56888888 99999999888 999999999999 8742 38889999999 99999988777 999
Q ss_pred HHHHHHHHHhccCchhH----HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 429 EDIANYAKGLIQGEEGK----LLRSKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 429 ~~l~~~i~~ll~~~~~~----~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
+.|.+.+.++|.| + +++++..+--+.+++.++++|.+.++.+.+++
T Consensus 335 ~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 335 HPLAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9999999999999 5 56666666555566656677887777766654
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=6.8e-15 Score=145.84 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=71.6
Q ss_pred CccccccccccccccccccchhHHHHHhhCCceeccccc---cccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHH
Q 011396 360 PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY---AEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 360 pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 436 (487)
+...+|+.+| ++|+++|.+|+.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++..+ .+.++|.+++.
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~---~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE---LLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc---CCHHHHHHHHH
Confidence 4477888899 999999988999999999999999874 467889999999 89999887765 68999999999
Q ss_pred HhccCchhHHHHHHHHH
Q 011396 437 GLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 437 ~ll~~~~~~~~r~~a~~ 453 (487)
++++| ++.++++.+
T Consensus 317 ~ll~~---~~~~~~~~~ 330 (348)
T TIGR01133 317 KLLLD---PANLEAMAE 330 (348)
T ss_pred HHHcC---HHHHHHHHH
Confidence 99998 655554433
No 36
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=3.5e-15 Score=149.81 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=70.2
Q ss_pred cccccccccccccccccchhHHHHHhhCCceeccccc------c--ccchh-----hHhhhhhccceEEeeecCCCCcCH
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY------A--EQKMN-----AVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~------~--DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
..+++.+| ++|+.+|.+++ |++++|+|+|+.|-. . .|..| +..+++ .+++..+...+ .++
T Consensus 256 ~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~---~~~ 328 (380)
T PRK00025 256 REAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEE---ATP 328 (380)
T ss_pred HHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCC---CCH
Confidence 67888888 99999998887 999999999988432 1 23222 233444 44444454444 799
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 429 EDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 429 ~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
+++.+++.++++| ++.++++.+-.+.+++.+ ..|.+.+.++.+.+.++
T Consensus 329 ~~l~~~i~~ll~~---~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 329 EKLARALLPLLAD---GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 9999999999999 555554444443333333 34555555555554443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=3.1e-15 Score=150.16 Aligned_cols=164 Identities=17% Similarity=0.243 Sum_probs=109.2
Q ss_pred CCcEEEEEecCCCCCCHHHHHHHHHHHHhc-CCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc--CCCee
Q 011396 278 SESVLFVCFGSGGTLSPEQLNELALGLEMS-GQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK--GVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~v~ 354 (487)
++++|++..|+.... +.+..+++++... +.+++++.+.+.. +-+.+....+ ..++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------------------~~~~l~~~~~~~~~~v~ 259 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------------------LKQSLEDLQETNPDALK 259 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------------------HHHHHHHHHhcCCCcEE
Confidence 455788877876432 2345666777554 3455555553211 0112222111 24788
Q ss_pred ecccCCc-cccccccccccccccccchhHHHHHhhCCceecc-ccccccchhhHhhhhhccceEEeeecCCCCcCHHHHH
Q 011396 355 VPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 355 ~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
+.+|+++ ..+++.+| ++|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++ .|+|+.. -+.+++.
T Consensus 260 ~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~ 329 (380)
T PRK13609 260 VFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVF 329 (380)
T ss_pred EEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHH
Confidence 8899987 58999999 999999989999999999999985 666777889999988 8998864 3679999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 011396 433 NYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKW 479 (487)
Q Consensus 433 ~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 479 (487)
++|.++++| +..++++.+-+..+. ...+.++.++.+++.+
T Consensus 330 ~~i~~ll~~---~~~~~~m~~~~~~~~----~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 330 AKTEALLQD---DMKLLQMKEAMKSLY----LPEPADHIVDDILAEN 369 (380)
T ss_pred HHHHHHHCC---HHHHHHHHHHHHHhC----CCchHHHHHHHHHHhh
Confidence 999999998 555544443332222 2345555555554443
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.62 E-value=8.4e-14 Score=129.47 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=192.7
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhc-CCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCC-
Q 011396 9 IPRAHVAMVPTP--GIGHLIPQVELAKRLVHQ-HNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDD- 84 (487)
Q Consensus 9 ~~~~~Il~~~~~--~~GH~~P~l~LA~~L~~r-~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 84 (487)
.+.+||+|++.- +.||+..++.||++|++. .|.+|++++..... .+ +. +|.+++++.+|.....+
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~--------~~--F~-~~~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPA--------GG--FP-GPAGVDFVKLPSLIKGDN 75 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCcc--------CC--CC-CcccCceEecCceEecCC
Confidence 345699999954 569999999999999764 38999999975511 11 11 25688999988653221
Q ss_pred -CCCchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhccccc
Q 011396 85 -LPDDVRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELD 163 (487)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 163 (487)
.....+.-..+-+......+.+...+ +..+||++|+|.+-+. + ..|. .|..- |....
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~----~~fkPDi~IVd~~P~G-l-r~EL--~ptL~-----------yl~~~--- 133 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTA----ETFKPDIFIVDKFPFG-L-RFEL--LPTLE-----------YLKTT--- 133 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHH----HhcCCCEEEEeccccc-h-hhhh--hHHHH-----------HHhhc---
Confidence 11111111112222222223333333 4459999999995554 1 1111 11000 00000
Q ss_pred cccccCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEE---cchhhhchHHHHHHhcCCCC
Q 011396 164 VKFSCEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMV---NSFMDLETGAFKALMEGDSS 240 (487)
Q Consensus 164 ~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~---~s~~~le~~~~~~~~~~~~~ 240 (487)
.+..--...+....|+..-. -|.+ ...++.++++. +.+++ +.|++++..+...-.
T Consensus 134 --~t~~vL~lr~i~D~p~~~~~--------~w~~-----~~~~~~I~r~y--D~V~v~GdP~f~d~~~~~~~~~~----- 191 (400)
T COG4671 134 --GTRLVLGLRSIRDIPQELEA--------DWRR-----AETVRLINRFY--DLVLVYGDPDFYDPLTEFPFAPA----- 191 (400)
T ss_pred --CCcceeehHhhhhchhhhcc--------chhh-----hHHHHHHHHhh--eEEEEecCccccChhhcCCccHh-----
Confidence 00000000000001111000 0111 11112222222 23332 455555443111000
Q ss_pred CCCCCeeecccCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHh-cCCceEEEEeCCc
Q 011396 241 FKPPPVYPVGPLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEM-SGQRFLWVVRSPH 319 (487)
Q Consensus 241 ~~~p~~~~vGp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~ 319 (487)
--.++.|+|.+..+ -+..+ . +. .|- +++--|.||-|.. ....+.+...+.|... .+.+-.|.+-...
T Consensus 192 -i~~k~~ytG~vq~~-~~~~~---~-p~--~~~---pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP 259 (400)
T COG4671 192 -IRAKMRYTGFVQRS-LPHLP---L-PP--HEA---PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVTGP 259 (400)
T ss_pred -hhhheeEeEEeecc-CcCCC---C-CC--cCC---CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEeCC
Confidence 01268999988222 11110 0 00 111 3344788888873 4456677777776654 3444234332221
Q ss_pred cccccccccccCCCCCCCCCCchhHHHhh-----cCCCeeecccCCc-cccccccccccccccccchhHHHHHhhCCcee
Q 011396 320 ERAANATYFGIQSMKDPFDFLPKGFLDRT-----KGVGLVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPII 393 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~v~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l 393 (487)
..|+..+++. +.+++.+..|-.+ ..++..++ ++|+-||.||++|-|.+|||.|
T Consensus 260 -------------------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aL 318 (400)
T COG4671 260 -------------------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPAL 318 (400)
T ss_pred -------------------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceE
Confidence 2454433333 2367888888877 88998899 9999999999999999999999
Q ss_pred cccccc---ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 394 AWPLYA---EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 394 ~~P~~~---DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++|... ||-.-|.|+++ +|+--.+..++ +++..++++|...+..
T Consensus 319 ivPr~~p~eEQliRA~Rl~~-LGL~dvL~pe~---lt~~~La~al~~~l~~ 365 (400)
T COG4671 319 IVPRAAPREEQLIRAQRLEE-LGLVDVLLPEN---LTPQNLADALKAALAR 365 (400)
T ss_pred EeccCCCcHHHHHHHHHHHh-cCcceeeCccc---CChHHHHHHHHhcccC
Confidence 999864 89999999999 99999998888 9999999999999873
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.58 E-value=5.4e-14 Score=134.16 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHhc--CCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc-CCCeeec
Q 011396 280 SVLFVCFGSGGTLSPEQLNELALGLEMS--GQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK-GVGLVVP 356 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~ 356 (487)
+.|+|++|..... .....+++++... +.++.+++|.... ..+.+....+ ..|+.+.
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~-------------------~~~~l~~~~~~~~~i~~~ 229 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNP-------------------NLDELKKFAKEYPNIILF 229 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCc-------------------CHHHHHHHHHhCCCEEEE
Confidence 4789999875332 2445566776654 3466677766422 1122322222 3478888
Q ss_pred ccCCc-cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhh
Q 011396 357 SWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLL 408 (487)
Q Consensus 357 ~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v 408 (487)
.++++ ..+|+.+| ++|++|| +|+.|+++.|+|+|++|+..+|..||+.+
T Consensus 230 ~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 230 IDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred eCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 99998 69999999 9999999 99999999999999999999999999753
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.54 E-value=2.3e-12 Score=129.60 Aligned_cols=166 Identities=10% Similarity=0.156 Sum_probs=109.8
Q ss_pred CCcEEEEEecCCCCCCHHHHHHHHHHHHh-c-CCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhh-cCCCee
Q 011396 278 SESVLFVCFGSGGTLSPEQLNELALGLEM-S-GQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT-KGVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~ 354 (487)
++++|++..|+... .+.+..+++++.. . +.+++++.|.+.. +-+.+.... ...++.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~-------------------l~~~l~~~~~~~~~v~ 259 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE-------------------LKRSLTAKFKSNENVL 259 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH-------------------HHHHHHHHhccCCCeE
Confidence 45688888888652 1334455555422 2 3455555543311 111222222 234788
Q ss_pred ecccCCc-cccccccccccccccccchhHHHHHhhCCceecc-ccccccchhhHhhhhhccceEEeeecCCCCcCHHHHH
Q 011396 355 VPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW-PLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 355 ~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
+.+|.++ ..+++.+| ++|+..|..|+.||++.|+|+|+. |..++|..|+..+.+ .|+|+.. -+.+++.
T Consensus 260 ~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~-------~~~~~l~ 329 (391)
T PRK13608 260 ILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIA-------DTPEEAI 329 (391)
T ss_pred EEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEe-------CCHHHHH
Confidence 8899876 67899999 999999989999999999999998 676677789999999 9999875 3788999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 433 NYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 433 ~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
++|.++++| ++.++++ ++.+++. ....+..+.++.+.+.+++
T Consensus 330 ~~i~~ll~~---~~~~~~m---~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 330 KIVASLTNG---NEQLTNM---ISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHhcC---HHHHHHH---HHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 999999988 4443333 3333322 1234555556666555543
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.53 E-value=6e-16 Score=136.43 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=96.9
Q ss_pred EEEEEecCCCCCC-HHHHHHHHHHHHh--cCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc-C-CCeee
Q 011396 281 VLFVCFGSGGTLS-PEQLNELALGLEM--SGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK-G-VGLVV 355 (487)
Q Consensus 281 ~v~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~v~~ 355 (487)
+|+|+.||..... .+.+..+...+.. ...+++|.+|.... ........ . .++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~---------------------~~~~~~~~~~~~~v~~ 59 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY---------------------EELKIKVENFNPNVKV 59 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC---------------------HHHCCCHCCTTCCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH---------------------HHHHHHHhccCCcEEE
Confidence 4899999863321 1122223333333 25788888887532 11000111 1 47888
Q ss_pred cccCC-ccccccccccccccccccchhHHHHHhhCCceecccccc----ccchhhHhhhhhccceEEeeecCCCCcCHHH
Q 011396 356 PSWSP-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA----EQKMNAVLLIDDLKVSFRVKVNENGLVGRED 430 (487)
Q Consensus 356 ~~~~p-q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 430 (487)
.+|++ ...++..+| ++|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+.... .+.+.
T Consensus 60 ~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~---~~~~~ 133 (167)
T PF04101_consen 60 FGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE---LNPEE 133 (167)
T ss_dssp ECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC----SCCC
T ss_pred EechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc---CCHHH
Confidence 99999 699999999 9999999999999999999999999988 99999999999 99999998877 78999
Q ss_pred HHHHHHHhccC
Q 011396 431 IANYAKGLIQG 441 (487)
Q Consensus 431 l~~~i~~ll~~ 441 (487)
|.++|.+++++
T Consensus 134 L~~~i~~l~~~ 144 (167)
T PF04101_consen 134 LAEAIEELLSD 144 (167)
T ss_dssp HHHHHHCHCCC
T ss_pred HHHHHHHHHcC
Confidence 99999999998
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=1.7e-12 Score=129.89 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=75.8
Q ss_pred eeecccCCc-cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhc----cceEEeeecCCCCcC
Q 011396 353 LVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDL----KVSFRVKVNENGLVG 427 (487)
Q Consensus 353 v~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~----G~G~~l~~~~~~~~~ 427 (487)
+.+..+..+ ..+++.++ ++|+-+|..| .|+..+|+|+|++|+...|. |+...++ . |.++.+.. .+
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-----~~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-----KN 350 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-----CC
Confidence 444444443 77888899 9999999766 99999999999999877776 9877666 4 66666653 35
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 011396 428 REDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
.+.|.+++.+++.| +..++++.+ ..++.++..+.+.+.++.+.
T Consensus 351 ~~~l~~~l~~ll~d---~~~~~~~~~---~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 351 PEQAAQVVRQLLAD---PELLERCRR---NGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHHHcC---HHHHHHHHH---HHHHhcCCCCHHHHHHHHHH
Confidence 69999999999998 655554442 22222334555555444443
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.45 E-value=1.5e-11 Score=123.42 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCeeecccCCc-cccccccccccccccccchhHHHHHhhCCceeccccccccc-hhhHhhhhhccceEEeeecCCCCcCH
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQK-MNAVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
.++.+.+|+++ ..+++.+| ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCH
Confidence 46778899987 88898899 9999999999999999999999998766676 69999998 8999865 378
Q ss_pred HHHHHHHHHhccC
Q 011396 429 EDIANYAKGLIQG 441 (487)
Q Consensus 429 ~~l~~~i~~ll~~ 441 (487)
+++.++|.+++.|
T Consensus 335 ~~la~~i~~ll~~ 347 (382)
T PLN02605 335 KEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999986
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.24 E-value=2.4e-08 Score=98.79 Aligned_cols=110 Identities=18% Similarity=0.107 Sum_probs=76.7
Q ss_pred CCCeeecccCCcc---cccccccccccccccc----chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 350 GVGLVVPSWSPQV---QVLRHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~~L~~~~~~~~I~HGG----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+++++. .+++.++ ++|+.+. .+++.||+++|+|+|+.+.. .+...+.+ .+.|...+.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCC--
Confidence 4578888998864 4788888 7776654 47899999999999987754 35556666 688887764
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQK 478 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
-+.+++.+++.++++| ++.++++.+-+.... +.-+..+..+++++.
T Consensus 317 ---~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 ---GDAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEA 362 (364)
T ss_pred ---CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHh
Confidence 3678899999999998 555544444333332 234555555555544
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.23 E-value=2.4e-11 Score=103.53 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=76.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHH
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMET 93 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (487)
|+|++.|+.||++|+++||++|++| ||+|++++++. ....+ . ..++.+..++.. ..+.+......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~---------~~~~v-~--~~Gl~~~~~~~~--~~~~~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPD---------FRERV-E--AAGLEFVPIPGD--SRLPRSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGG---------GHHHH-H--HTT-EEEESSSC--GGGGHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeeccc---------ceecc-c--ccCceEEEecCC--cCcCcccchhh
Confidence 7899999999999999999999988 99999998886 23333 3 357888888753 01111111111
Q ss_pred HHHHHHH--HhHHHHHHHHHHHh--------cCCCceEEEeCCCcchHHHHHHHhCCCeEEEecch
Q 011396 94 RITLTLA--RSLSSLRDALKVLA--------ESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 94 ~~~~~~~--~~~~~~~~~l~~~~--------~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
.+..... .....+.+.+.+.. ....+|+++.+.....+..+||++|||++.....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 1111111 12222333333221 12367888888888888899999999999876654
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.13 E-value=7.2e-08 Score=99.48 Aligned_cols=128 Identities=19% Similarity=0.130 Sum_probs=79.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCC
Q 011396 281 VLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSP 360 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~p 360 (487)
.+++..|+... .+.+..++++++....-.++.+|.... -+.+....+..+|.+.++++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~--------------------~~~l~~~~~~~~V~f~G~v~ 321 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPY--------------------REELEKMFAGTPTVFTGMLQ 321 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChH--------------------HHHHHHHhccCCeEEeccCC
Confidence 45566687532 234666777777654322334443211 13344444456788889997
Q ss_pred c---ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhh--hccceEEeeecCCCCcCHHHH
Q 011396 361 Q---VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLID--DLKVSFRVKVNENGLVGREDI 431 (487)
Q Consensus 361 q---~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~--~~G~G~~l~~~~~~~~~~~~l 431 (487)
+ ..+++.+| ++|.- |-..++.||+++|+|+|+....+ ....+.+ .-+.|..++.. +.+++
T Consensus 322 ~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-----d~~~l 390 (465)
T PLN02871 322 GDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-----DVDDC 390 (465)
T ss_pred HHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-----CHHHH
Confidence 5 45777788 67643 33457899999999999876432 1111211 03677777643 68999
Q ss_pred HHHHHHhccC
Q 011396 432 ANYAKGLIQG 441 (487)
Q Consensus 432 ~~~i~~ll~~ 441 (487)
+++|.++++|
T Consensus 391 a~~i~~ll~~ 400 (465)
T PLN02871 391 VEKLETLLAD 400 (465)
T ss_pred HHHHHHHHhC
Confidence 9999999988
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.12 E-value=1.3e-07 Score=95.38 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCeeecccCCccc---ccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQVQ---VLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~~---~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.+|+|+.+ ++..++ ++++. |-..++.||+++|+|+|+.... .....+++ .+.|...+.
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~--- 352 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDP--- 352 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCC---
Confidence 5788999999754 577888 76643 3346899999999999986643 34555666 678887754
Q ss_pred CCcCHHHHHHHHHHhccC
Q 011396 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~ 441 (487)
-+.+++.++|.+++++
T Consensus 353 --~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 353 --RDPEALAAALRRLLTD 368 (398)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 3689999999999988
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.3e-09 Score=96.29 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=101.5
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc-CCCeeeccc
Q 011396 280 SVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK-GVGLVVPSW 358 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~~~~~ 358 (487)
..|+|++|.. .+....-+++..|.+.+..+-.++++.. +-.+.++.+.+ .+++...-.
T Consensus 159 r~ilI~lGGs--Dpk~lt~kvl~~L~~~~~nl~iV~gs~~-------------------p~l~~l~k~~~~~~~i~~~~~ 217 (318)
T COG3980 159 RDILITLGGS--DPKNLTLKVLAELEQKNVNLHIVVGSSN-------------------PTLKNLRKRAEKYPNINLYID 217 (318)
T ss_pred heEEEEccCC--ChhhhHHHHHHHhhccCeeEEEEecCCC-------------------cchhHHHHHHhhCCCeeeEec
Confidence 3699999872 2334566788888777755555555321 12234444443 456665444
Q ss_pred CC-ccccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHH
Q 011396 359 SP-QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 359 ~p-q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 437 (487)
.. ...++..|+ +.|+-|| .|+.|++..|+|.+++|+.-.|.--|...+. +|+-..+.-. +++......+.+
T Consensus 218 ~~dma~LMke~d--~aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~~ 289 (318)
T COG3980 218 TNDMAELMKEAD--LAISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEILQ 289 (318)
T ss_pred chhHHHHHHhcc--hheeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHHH
Confidence 44 466999999 9999888 5999999999999999999999999999999 8888777543 677778888888
Q ss_pred hccCchhHHHHHHHH
Q 011396 438 LIQGEEGKLLRSKMR 452 (487)
Q Consensus 438 ll~~~~~~~~r~~a~ 452 (487)
+.+| ...|.+.-
T Consensus 290 i~~d---~~~rk~l~ 301 (318)
T COG3980 290 IQKD---YARRKNLS 301 (318)
T ss_pred hhhC---HHHhhhhh
Confidence 8888 55555443
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.09 E-value=1.4e-07 Score=93.02 Aligned_cols=80 Identities=21% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCCeeecccCCc---cccccccccccccc-----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 350 GVGLVVPSWSPQ---VQVLRHGSTGGFLS-----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 350 ~~~v~~~~~~pq---~~~L~~~~~~~~I~-----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
..++.+.+++++ ..++..++ ++|. -|...++.||+++|+|+|+.+. ..+...+.+ -+.|..++..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECCC
Confidence 357888899975 45688888 6662 2344589999999999998664 345556666 5678877653
Q ss_pred CCCCcCHHHHHHHHHHhccC
Q 011396 422 ENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~ 441 (487)
+.+++.+++.++++|
T Consensus 315 -----d~~~l~~~i~~l~~~ 329 (359)
T cd03823 315 -----DAEDLAAALERLIDD 329 (359)
T ss_pred -----CHHHHHHHHHHHHhC
Confidence 689999999999998
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.07 E-value=1.1e-07 Score=94.80 Aligned_cols=81 Identities=15% Similarity=0.079 Sum_probs=58.2
Q ss_pred cCCCeeecccCCcc---cccccccccccccccc---------chhHHHHHhhCCceeccccccccchhhHhhhhhccceE
Q 011396 349 KGVGLVVPSWSPQV---QVLRHGSTGGFLSHCG---------WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSF 416 (487)
Q Consensus 349 ~~~~v~~~~~~pq~---~~L~~~~~~~~I~HGG---------~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 416 (487)
..+++.+.+++++. .++..++ ++|.... .+++.||+++|+|+|+.+....+. .+.. .+.|.
T Consensus 273 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~ 345 (394)
T cd03794 273 GLDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGL 345 (394)
T ss_pred CCCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcce
Confidence 34688888898864 5677788 6663322 334799999999999988765433 3333 46677
Q ss_pred EeeecCCCCcCHHHHHHHHHHhccC
Q 011396 417 RVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 417 ~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++. -+.+++.++|.++++|
T Consensus 346 ~~~~-----~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 346 VVPP-----GDPEALAAAILELLDD 365 (394)
T ss_pred EeCC-----CCHHHHHHHHHHHHhC
Confidence 6654 3789999999999988
No 51
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.04 E-value=9.2e-08 Score=97.55 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=58.7
Q ss_pred ccccccccccc-ccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHH
Q 011396 362 VQVLRHGSTGG-FLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 362 ~~~L~~~~~~~-~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 436 (487)
..+++.+| + |+. -+|..++.||+++|+|+|+-|...++......+.+ .|+++.. -+.+++.+++.
T Consensus 314 ~~~y~~aD--i~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~-------~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIAD--IAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV-------EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCC--EEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE-------CCHHHHHHHHH
Confidence 56677788 5 331 24445699999999999999988888887777777 6766654 37899999999
Q ss_pred HhccCchhHHHHHHHHH
Q 011396 437 GLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 437 ~ll~~~~~~~~r~~a~~ 453 (487)
++++| +..++++.+
T Consensus 384 ~ll~~---~~~~~~m~~ 397 (425)
T PRK05749 384 YLLTD---PDARQAYGE 397 (425)
T ss_pred HHhcC---HHHHHHHHH
Confidence 99998 544444333
No 52
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.03 E-value=9.2e-07 Score=89.34 Aligned_cols=82 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCCeeecccCCcc---cccccccccccccc-cc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 350 GVGLVVPSWSPQV---QVLRHGSTGGFLSH-CG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~~L~~~~~~~~I~H-GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.++|.+.+++|+. .++..+++-++.+. .| ..++.||+++|+|+|+... ......+.+ -..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~-~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITD-GENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhccc-CCceEEcCC----
Confidence 3578889999974 46677883232232 22 3489999999999998643 344555555 456777654
Q ss_pred CcCHHHHHHHHHHhccC
Q 011396 425 LVGREDIANYAKGLIQG 441 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~ 441 (487)
-++++++++|.++++|
T Consensus 351 -~d~~~la~~i~~ll~~ 366 (396)
T cd03818 351 -FDPDALAAAVIELLDD 366 (396)
T ss_pred -CCHHHHHHHHHHHHhC
Confidence 3789999999999998
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.03 E-value=9.1e-07 Score=87.03 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCCeeecccCCc---cccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 350 GVGLVVPSWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq---~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+++++ ..++..++ ++|. -|..+++.||+++|+|+|+.+. ......+.+ .+.|...+.
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~-- 325 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPP-- 325 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCC--
Confidence 457888899974 55787888 6662 3567799999999999998765 445666666 677877754
Q ss_pred CCCcCHHHHHHHHHHhccC
Q 011396 423 NGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~ 441 (487)
.+.+++.+++.++++|
T Consensus 326 ---~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 326 ---GDPEALAEAILRLLDD 341 (374)
T ss_pred ---CCHHHHHHHHHHHHcC
Confidence 3689999999999998
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.01 E-value=1.3e-06 Score=85.72 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCeeecccCCc-cccccccccccccccc----cchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|.+.++..+ ..++..++ ++|.-. -.+++.||+++|+|+|+.+.. .+...+.+ .+.|...+.
T Consensus 246 ~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~-~~~g~~~~~----- 313 (359)
T cd03808 246 GRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID-GVNGFLVPP----- 313 (359)
T ss_pred ceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc-CcceEEECC-----
Confidence 46777776554 67888888 666433 367999999999999986543 34455665 577777654
Q ss_pred cCHHHHHHHHHHhccCc
Q 011396 426 VGREDIANYAKGLIQGE 442 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~ 442 (487)
-+.+++.+++.+++.|+
T Consensus 314 ~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 314 GDAEALADAIERLIEDP 330 (359)
T ss_pred CCHHHHHHHHHHHHhCH
Confidence 36899999999999883
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.00 E-value=6.6e-07 Score=89.27 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCeeecccCCc-ccccccccccccc----ccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I----~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++.++ ..++..++ ++| +-|...++.||+++|+|+|+... ...+..+.+ -..|...+.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~-~~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKH-GETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcC-CCceEEcCC-----
Confidence 45777787765 67788888 555 33445699999999999998543 344555555 457776654
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
-+.+++.+++.++++| +..+.++.+-+..... +.-+....++++.+.++
T Consensus 321 ~~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~~---~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 321 GDVEAMAEYALSLLED---DELWQEFSRAARNRAA---ERFDSERIVPQYEALYR 369 (371)
T ss_pred CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHH
Confidence 3789999999999988 4443333332222211 22344445555554443
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.00 E-value=9.2e-07 Score=87.57 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=59.4
Q ss_pred CCeeecccCCcc---ccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.+++|+. .++..++ ++|. .+...++.||+++|+|+|+... ...+..+.+ .+.|..++..+
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~~- 330 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPGD- 330 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCCC-
Confidence 578888999874 4677888 5663 2445789999999999998653 345556666 67888886543
Q ss_pred CCcCHHHHHHHHHHhccCc
Q 011396 424 GLVGREDIANYAKGLIQGE 442 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~ 442 (487)
. ++.+++.++++++
T Consensus 331 ----~-~~~~~i~~l~~~~ 344 (374)
T cd03817 331 ----E-ALAEALLRLLQDP 344 (374)
T ss_pred ----H-HHHHHHHHHHhCh
Confidence 2 9999999999983
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.96 E-value=1.6e-06 Score=88.05 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCeeec-ccCCc---cccccccccccccc-c------ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEee
Q 011396 351 VGLVVP-SWSPQ---VQVLRHGSTGGFLS-H------CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~-~~~pq---~~~L~~~~~~~~I~-H------GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.++++. +|+|. ..+|+.++ ++|. + |-..++.||+++|+|+|+... ......+++ -+.|+.++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~-~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKH-GENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcC-CCCEEEEC
Confidence 455544 58875 45677888 5552 1 124579999999999998553 345556666 67888772
Q ss_pred ecCCCCcCHHHHHHHHHHhccC---ch-hHHHHHHHHHHH
Q 011396 420 VNENGLVGREDIANYAKGLIQG---EE-GKLLRSKMRALK 455 (487)
Q Consensus 420 ~~~~~~~~~~~l~~~i~~ll~~---~~-~~~~r~~a~~l~ 455 (487)
+.++++++|.++++| ++ -..+++++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 689999999999987 33 344555554443
No 58
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.93 E-value=6.4e-08 Score=96.62 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=71.1
Q ss_pred CCeeecccCCc---cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcC
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+++.+.+.+++ ..+++.++ ++|+-.|. .+.||+++|+|+|.++...+++. +.. .|.+..+. .+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CC
Confidence 46777776654 45677777 89987764 47999999999999876555553 334 47666552 37
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 428 REDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
+++|.+++.++++| +..++++.+-. +..+.++++.+.++.+.+
T Consensus 321 ~~~i~~ai~~ll~~---~~~~~~~~~~~----~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTD---PDEYKKMSNAS----NPYGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhC---hHHHHHhhhcC----CCCcCchHHHHHHHHHHh
Confidence 89999999999988 66665543322 222345555555554443
No 59
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.93 E-value=1.9e-06 Score=87.49 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=74.7
Q ss_pred CCeeecccCCc---cccccccccccccccccc------hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLSHCGW------NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~HGG~------gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
++|.+.+|+|+ ..+++.+|+-++.+..+. +.+.|++++|+|+|+....+.. ... +.. +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~-~i~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQ-LVE--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHH-HHh--CCcEEeCC-
Confidence 47888899986 457888885555555432 2368999999999998654311 111 222 56777654
Q ss_pred CCCCcCHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhh
Q 011396 422 ENGLVGREDIANYAKGLIQGEE-GKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLES 484 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 484 (487)
-+.++++++|.++++|++ ...+++++++..+ +.-+.+..++++++.+++...
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHHHhc
Confidence 378999999999998832 2334444433332 234666777777777776543
No 60
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.92 E-value=4e-08 Score=97.93 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=86.5
Q ss_pred CCcEEEEEecCCCCC-CHHHHHHHHHHHHhcCCc-eEEEEeCCccccccccccccCCCCCCCCCCchhHHHh---hc--C
Q 011396 278 SESVLFVCFGSGGTL-SPEQLNELALGLEMSGQR-FLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDR---TK--G 350 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~ 350 (487)
+++.|++++|..... ..+.+..++++++....+ +.++...... .-+.+.+. .. .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-------------------~~~~l~~~~~~~~~~~ 257 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-------------------TRPRIREAGLEFLGHH 257 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-------------------hHHHHHHHHHhhccCC
Confidence 345788888775443 356677788888765432 4444433211 01122211 11 3
Q ss_pred CCeeecccCCc---cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcC
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+++.+.+..++ ..++..++ +||+..| |.+.|+++.|+|+|+++.. |. +..+.+ .|++..+. -+
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~ 323 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TD 323 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CC
Confidence 57777665543 45677788 9999999 7888999999999998743 22 334555 57665552 25
Q ss_pred HHHHHHHHHHhccCchhHHHHHH
Q 011396 428 REDIANYAKGLIQGEEGKLLRSK 450 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~~~~~r~~ 450 (487)
.++|.+++.+++++ +..+++
T Consensus 324 ~~~i~~~i~~ll~~---~~~~~~ 343 (363)
T cd03786 324 PEAILAAIEKLLSD---EFAYSL 343 (363)
T ss_pred HHHHHHHHHHHhcC---chhhhc
Confidence 79999999999988 444443
No 61
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.88 E-value=5.4e-06 Score=81.76 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=60.3
Q ss_pred CCCeeecccCCc---ccccccccccccc----ccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 350 GVGLVVPSWSPQ---VQVLRHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq---~~~L~~~~~~~~I----~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+++++ ..++..++ ++| +-|..+++.||+++|+|+|+-+.. .....+.+ .+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAAD--VFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcC--eeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEECC--
Confidence 357888899986 45677778 555 235677899999999999986543 34455666 666777654
Q ss_pred CCCcCHHHHHHHHHHhccC
Q 011396 423 NGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~ 441 (487)
-+.+++.+++.+++++
T Consensus 329 ---~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 329 ---GDPEALAEAILRLLAD 344 (377)
T ss_pred ---CCHHHHHHHHHHHhcC
Confidence 4789999999999998
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.87 E-value=2.5e-06 Score=84.71 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=70.1
Q ss_pred CCeeecccCC-c---ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 351 VGLVVPSWSP-Q---VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 351 ~~v~~~~~~p-q---~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
.++.+.+|++ + ..+++.++ ++|.- |..+++.||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeCC--
Confidence 3677788888 3 35687788 67663 4468999999999999976542 23334444 456766653
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
.+.+++.+++.++++| +..+.+..+-+.... .+.-+.+...+++.+-++
T Consensus 315 ---~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 ---GDPEDLAEGIEWLLAD---PDEREELGEAARELA---ENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ---CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHh
Confidence 4789999999999988 443322222222211 123455555666665544
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.85 E-value=3.2e-06 Score=82.60 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCeeecccCCc-cccccccccccccccc----cchhHHHHHhhCCceeccccccccchhhHhhhhhcc-ceEEeeecCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLK-VSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~ 424 (487)
.++.+.++..+ ..++..++ ++|.-. ..+++.||+++|+|+|+.+....+ ..+.. .| .|...+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~---- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPN---- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCC----
Confidence 35666666333 67788888 666443 357999999999999986544433 23334 34 7777754
Q ss_pred CcCHHHHHHHHHHhccCchhHHHHHHHHHHH
Q 011396 425 LVGREDIANYAKGLIQGEEGKLLRSKMRALK 455 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~ 455 (487)
-+.+++.++|.++++| ++.++++.+-+
T Consensus 304 -~~~~~~~~~i~~ll~~---~~~~~~~~~~~ 330 (348)
T cd03820 304 -GDVEALAEALLRLMED---EELRKRMGANA 330 (348)
T ss_pred -CCHHHHHHHHHHHHcC---HHHHHHHHHHH
Confidence 3679999999999998 55555444443
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.85 E-value=1.3e-05 Score=81.27 Aligned_cols=113 Identities=17% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCeeecccCCc---cccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
++|.+.+++|+ ..+++.++ ++|. -|...++.||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCC---
Confidence 47888899886 45788888 6653 23346899999999999986643 33345555 567777754
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
-+.++++++|.+++++ +..++++.+-+....+ .-+-...++++.+-+++.
T Consensus 353 --~d~~~la~~i~~~l~~---~~~~~~~~~~~~~~~~----~fsw~~~~~~~~~~y~~~ 402 (405)
T TIGR03449 353 --HDPADWADALARLLDD---PRTRIRMGAAAVEHAA----GFSWAATADGLLSSYRDA 402 (405)
T ss_pred --CCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Confidence 3789999999999988 4444433333332221 235455556665555543
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.84 E-value=2.7e-06 Score=84.22 Aligned_cols=132 Identities=13% Similarity=0.004 Sum_probs=80.8
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHH----hhcCCCeee
Q 011396 280 SVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLD----RTKGVGLVV 355 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~v~~ 355 (487)
..+++..|+... .+....++++++... ++-+.+.+... ..+.+.. .-..+||.+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~-~~~l~i~G~g~-------------------~~~~~~~~~~~~~~~~~V~~ 248 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALP-DAPLVIVGEGP-------------------LEAELEALAAALGLLDRVRF 248 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhcc-CcEEEEEeCCh-------------------hHHHHHHHHHhcCCcceEEE
Confidence 356677787532 234556777777666 33333322211 0111221 112468999
Q ss_pred cccCCcc---ccccccccccccc---ccc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCH
Q 011396 356 PSWSPQV---QVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 356 ~~~~pq~---~~L~~~~~~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
.+|+|+. .++..+++-++.+ +.| ..++.||+++|+|+|+....+....... . -+.|...+. -+.
T Consensus 249 ~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~-----~d~ 319 (357)
T cd03795 249 LGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPP-----GDP 319 (357)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCC-----CCH
Confidence 9999974 5777788433333 233 4479999999999999765554433222 2 366766653 378
Q ss_pred HHHHHHHHHhccCc
Q 011396 429 EDIANYAKGLIQGE 442 (487)
Q Consensus 429 ~~l~~~i~~ll~~~ 442 (487)
+++.++|.++++|+
T Consensus 320 ~~~~~~i~~l~~~~ 333 (357)
T cd03795 320 AALAEAIRRLLEDP 333 (357)
T ss_pred HHHHHHHHHHHHCH
Confidence 99999999999983
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.79 E-value=1.6e-05 Score=80.02 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=57.2
Q ss_pred CCeeecccCCcc---cccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
++|.+.+++|+. .++..++ +++.. |-..++.||+++|+|+|+.-.. .....+.. -+.|...+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeC----
Confidence 578999999974 5677788 55531 2235789999999999987543 23344555 56677663
Q ss_pred CCcCHHHHHHHHHHhccCc
Q 011396 424 GLVGREDIANYAKGLIQGE 442 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~ 442 (487)
.+.++++++|.+++.++
T Consensus 349 --~~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 349 --PTPEEFAEAMLKLANDP 365 (392)
T ss_pred --CCHHHHHHHHHHHHhCh
Confidence 36899999999999883
No 67
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.76 E-value=6e-07 Score=87.66 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=70.1
Q ss_pred cccccccccccccccccchhHHHHHhhCCceeccccc--cccchhhHhhh---hhccceEEee-------------ecCC
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY--AEQKMNAVLLI---DDLKVSFRVK-------------VNEN 423 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~--~DQ~~na~~v~---~~~G~G~~l~-------------~~~~ 423 (487)
.+++..+| ++|+-.|..|+ |+..+|+|||+ ++. .-|+.||+++. . .|+...+- .++
T Consensus 230 ~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~- 303 (347)
T PRK14089 230 HKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEF- 303 (347)
T ss_pred HHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhccc-
Confidence 56888899 99999999999 99999999988 554 47889999999 7 77776652 233
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQV 475 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~ 475 (487)
.|++.|.+.+.+. .. +.+++...++.+.+. . |++.+..+.+
T Consensus 304 --~t~~~la~~i~~~-~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i 344 (347)
T PRK14089 304 --VTVENLLKAYKEM-DR---EKFFKKSKELREYLK----H-GSAKNVAKIL 344 (347)
T ss_pred --CCHHHHHHHHHHH-HH---HHHHHHHHHHHHHhc----C-CHHHHHHHHH
Confidence 8999999999772 22 455555555555442 3 5555554443
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.73 E-value=1.2e-05 Score=81.25 Aligned_cols=113 Identities=13% Similarity=0.043 Sum_probs=67.7
Q ss_pred CCeeecccCCc---cccccccccccccc---cccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS---HCGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~---HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
++|.+.+|+|+ ..+++.++ ++|. +-|. .++.||+++|+|+|+.+..+ ....+.+ |.+....
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~---- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE---- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC----
Confidence 45888899885 55777788 5553 2244 49999999999999877642 2223333 4332221
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhh
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 483 (487)
.+.+++.+++.+++.+. .-+. .+.+..++.+.+.-+-.+.++++++..++..
T Consensus 318 --~~~~~l~~~l~~~l~~~---~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 318 --PDVESIVRKLEEAISIL---RTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred --CCHHHHHHHHHHHHhCh---hhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 36799999999999762 1111 1111112222244566666666666665544
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.72 E-value=1.3e-05 Score=79.16 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCCeeecccCCc---cccccccccccccc--c--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 350 GVGLVVPSWSPQ---VQVLRHGSTGGFLS--H--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq---~~~L~~~~~~~~I~--H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
.+++.+.+|+++ ..++..++ ++|. + |-..++.||+++|+|+|+.+.. .....+.. +.|...+
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~ad--v~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~--- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADAD--LFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVD--- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCC--EEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeC---
Confidence 357888999995 44577788 4543 2 3356899999999999997643 22333333 6666654
Q ss_pred CCCcCHHHHHHHHHHhccC
Q 011396 423 NGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~ 441 (487)
.+.+++.++|.+++++
T Consensus 330 ---~~~~~~~~~i~~l~~~ 345 (375)
T cd03821 330 ---DDVDALAAALRRALEL 345 (375)
T ss_pred ---CChHHHHHHHHHHHhC
Confidence 3459999999999998
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.71 E-value=1.4e-05 Score=78.99 Aligned_cols=78 Identities=14% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCeeecc-cCCc---ccccccccccccc--cc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeee
Q 011396 351 VGLVVPS-WSPQ---VQVLRHGSTGGFL--SH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKV 420 (487)
Q Consensus 351 ~~v~~~~-~~pq---~~~L~~~~~~~~I--~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~ 420 (487)
.+|.+.+ |+|+ ..+++.++ ++| ++ |..+++.||+++|+|+|+.+..+ ...+.. .+.|...+.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEcC
Confidence 4676664 4875 56777788 555 22 44668999999999999877543 334455 577777654
Q ss_pred cCCCCcCHHHHHHHHHHhccC
Q 011396 421 NENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 421 ~~~~~~~~~~l~~~i~~ll~~ 441 (487)
-+.+++.+++.++++|
T Consensus 319 -----~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 319 -----GDPAALAEAIRRLLAD 334 (366)
T ss_pred -----CCHHHHHHHHHHHHcC
Confidence 3689999999999998
No 71
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.68 E-value=7e-06 Score=80.25 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCeeecccCCc-cccccccccccccc--c--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLS--H--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~--H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++.++ ..++..++ ++|. + |..+++.||+++|+|+|+.... .....+.+ -+.|...+..
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~~---- 314 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPVG---- 314 (353)
T ss_pred ccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECCC----
Confidence 46777788776 67888888 5552 2 4467899999999999986443 55566777 6888887653
Q ss_pred cCHHHH---HHHHHHhccC
Q 011396 426 VGREDI---ANYAKGLIQG 441 (487)
Q Consensus 426 ~~~~~l---~~~i~~ll~~ 441 (487)
+.+.+ .+++.+++.+
T Consensus 315 -~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 315 -DEAALAAAALALLDLLLD 332 (353)
T ss_pred -CHHHHHHHHHHHHhccCC
Confidence 56666 6677777776
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.67 E-value=1.2e-05 Score=80.10 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCeeecccCCc---cccccccccccccc----------cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEE
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS----------HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFR 417 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~----------HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
.++.+.+++|+ ..++..++ ++|. -|-.+++.||+++|+|+|+-+.. .++..+.+ .+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeEE
Confidence 56888899886 45577888 5553 23467999999999999987653 35556666 678887
Q ss_pred eeecCCCCcCHHHHHHHHHHhccC
Q 011396 418 VKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++. -+.+++.++|.++++|
T Consensus 318 ~~~-----~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPE-----GDVAALAAALGRLLAD 336 (367)
T ss_pred ECC-----CCHHHHHHHHHHHHcC
Confidence 764 3779999999999998
No 73
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.67 E-value=5.3e-05 Score=73.50 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHHHHHH
Q 011396 21 GIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRITLTLA 100 (487)
Q Consensus 21 ~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
..-|+.-+-.+.++|.++ ||+|.+.+-+. .....+...+ ++.+..+.... .+ ....+.....
T Consensus 9 ~p~hvhfFk~~I~eL~~~-GheV~it~R~~--------~~~~~LL~~y--g~~y~~iG~~g-----~~--~~~Kl~~~~~ 70 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKR-GHEVLITARDK--------DETEELLDLY--GIDYIVIGKHG-----DS--LYGKLLESIE 70 (335)
T ss_pred CchHHHHHHHHHHHHHhC-CCEEEEEEecc--------chHHHHHHHc--CCCeEEEcCCC-----CC--HHHHHHHHHH
Confidence 344999999999999887 99999988665 2344555544 45555554311 11 1111122111
Q ss_pred HhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecc
Q 011396 101 RSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
..-.+.+.+ ++.+||++|+-. .+.++.+|..+|+|++.+.=+
T Consensus 71 -R~~~l~~~~----~~~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 71 -RQYKLLKLI----KKFKPDVAISFG-SPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred -HHHHHHHHH----HhhCCCEEEecC-cHHHHHHHHHhCCCeEEEecC
Confidence 112222223 344999999765 677888999999999987543
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.63 E-value=3.8e-05 Score=75.86 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCeeecccCCc---cccccccccccccc----------cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEE
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS----------HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFR 417 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~----------HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
.+|.+.+++|+ ..++..++ ++|. -|..+++.||+++|+|+|+.+... ....+.+ ...|..
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~~ 308 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGLL 308 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceEE
Confidence 57888899975 45677788 5555 344679999999999999866432 2334455 447877
Q ss_pred eeecCCCCcCHHHHHHHHHHhccCc
Q 011396 418 VKVNENGLVGREDIANYAKGLIQGE 442 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~~i~~ll~~~ 442 (487)
++. -+.+++.++|.+++.|+
T Consensus 309 ~~~-----~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 309 VPP-----GDPEALADAIERLLDDP 328 (355)
T ss_pred eCC-----CCHHHHHHHHHHHHhCH
Confidence 754 37899999999999883
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.61 E-value=5e-05 Score=75.11 Aligned_cols=96 Identities=13% Similarity=-0.021 Sum_probs=61.8
Q ss_pred CCeeecccCCc-ccccccccccccccc---ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCc
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSH---CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~H---GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++|.+.++.++ ..++..+++-++-++ |..+++.||+++|+|+|+... ..+...+.+ -+.|..++. -
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~-~~~g~~~~~-----~ 315 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRP-GETGLLVPP-----G 315 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhC-CCceEEeCC-----C
Confidence 46888888554 677888884333331 234699999999999988653 234445555 557887754 3
Q ss_pred CHHHHHHHHHHhcc-Cch-hHHHHHHHHHHHH
Q 011396 427 GREDIANYAKGLIQ-GEE-GKLLRSKMRALKD 456 (487)
Q Consensus 427 ~~~~l~~~i~~ll~-~~~-~~~~r~~a~~l~~ 456 (487)
+.+++.++|..++. +++ ..+++++|++..+
T Consensus 316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 316 DAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 78999999976654 422 2344444444443
No 76
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.57 E-value=5.9e-06 Score=82.12 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=78.8
Q ss_pred CcEEEEEecCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc-CCCee
Q 011396 279 ESVLFVCFGSG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK-GVGLV 354 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~ 354 (487)
++.|+|++=-. .....+.+..+++++...+..+++++..... ....+-+.+..... .+++.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---------------~~~~i~~~i~~~~~~~~~v~ 265 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---------------GSRIINEAIEEYVNEHPNFR 265 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC---------------CchHHHHHHHHHhcCCCCEE
Confidence 35777777543 2344577889999998877666655432211 00001111121111 35677
Q ss_pred ecccCC---ccccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHH
Q 011396 355 VPSWSP---QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDI 431 (487)
Q Consensus 355 ~~~~~p---q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l 431 (487)
+.+-++ ...++.+++ ++|+.++.|- .||.+.|+|.|.+- +.+. ..+ .|..+. .-. .++++|
T Consensus 266 l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~e----~~~-~g~nvl-~vg----~~~~~I 329 (365)
T TIGR03568 266 LFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQK----GRL-RADSVI-DVD----PDKEEI 329 (365)
T ss_pred EECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCch----hhh-hcCeEE-EeC----CCHHHH
Confidence 766544 477888999 9999886665 99999999999775 2221 112 233222 122 588999
Q ss_pred HHHHHHhcc
Q 011396 432 ANYAKGLIQ 440 (487)
Q Consensus 432 ~~~i~~ll~ 440 (487)
.+++.++++
T Consensus 330 ~~a~~~~~~ 338 (365)
T TIGR03568 330 VKAIEKLLD 338 (365)
T ss_pred HHHHHHHhC
Confidence 999999653
No 77
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=0.0002 Score=69.96 Aligned_cols=321 Identities=15% Similarity=0.137 Sum_probs=175.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEe-CCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhH
Q 011396 15 AMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFI-PTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRME 92 (487)
Q Consensus 15 l~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (487)
+.+=.-+.|-++-.++|.++|.++. ++.+++-+ |+- ..+.....++..+....+|-. ++
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~T---------g~e~a~~~~~~~v~h~YlP~D----~~------ 112 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPT---------GAERAAALFGDSVIHQYLPLD----LP------ 112 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCcc---------HHHHHHHHcCCCeEEEecCcC----ch------
Confidence 3333356799999999999997763 56766665 333 233334445555555556531 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch--HHHHHHHhCCCeEEEecchHHHHHHHhhccccccccccCC
Q 011396 93 TRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSA--AFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFSCEY 170 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (487)
..+++.++ .++||++|.--...| ...-+++.|||.+.++.=
T Consensus 113 -----------~~v~rFl~----~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------------- 155 (419)
T COG1519 113 -----------IAVRRFLR----KWRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------------- 155 (419)
T ss_pred -----------HHHHHHHH----hcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------------
Confidence 11233344 449997664433444 445777899998874320
Q ss_pred CCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhh-hcccEEEEcchhhhchHHHHHHhcCCCCCCCCCeeec
Q 011396 171 RDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQY-LVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVYPV 249 (487)
Q Consensus 171 ~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~~v 249 (487)
+++|....|..+-...+.+ ..-+.++.-|-.+-+.- .. ++.+++..+
T Consensus 156 -----------------------LS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf-----~~----LGa~~v~v~ 203 (419)
T COG1519 156 -----------------------LSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF-----RS----LGAKPVVVT 203 (419)
T ss_pred -----------------------echhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH-----Hh----cCCcceEEe
Confidence 1122222233332222222 33334444443332221 11 144567888
Q ss_pred ccCcCCCCCCCCCCcccc---ccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHHhcC--CceEEEEeCCcccccc
Q 011396 250 GPLVQTGSTNETNNDRRH---ECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLEMSG--QRFLWVVRSPHERAAN 324 (487)
Q Consensus 250 Gp~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~ 324 (487)
|-+=.+..+... ... .+...+... + .+.|..+| .....+.......++.+.. ...||+=..+.. +
T Consensus 204 GNlKfd~~~~~~---~~~~~~~~r~~l~~~--r-~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpER-f-- 273 (419)
T COG1519 204 GNLKFDIEPPPQ---LAAELAALRRQLGGH--R-PVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPER-F-- 273 (419)
T ss_pred cceeecCCCChh---hHHHHHHHHHhcCCC--C-ceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhh-H--
Confidence 876444433221 122 223333332 2 57777777 3444555666666666543 444554333221 0
Q ss_pred ccccccCCCCCCCCCCchhHHHhhcCC-----------------CeeecccCC-cccccccccc----ccccccccchhH
Q 011396 325 ATYFGIQSMKDPFDFLPKGFLDRTKGV-----------------GLVVPSWSP-QVQVLRHGST----GGFLSHCGWNSI 382 (487)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~v~~~~~~p-q~~~L~~~~~----~~~I~HGG~gt~ 382 (487)
+.+.+-.+.. +|++.|-+- ...++.-+++ +=++-+||+| .
T Consensus 274 -----------------~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~ 335 (419)
T COG1519 274 -----------------KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-P 335 (419)
T ss_pred -----------------HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-h
Confidence 0111111222 233322221 1222222332 1245688887 6
Q ss_pred HHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHH
Q 011396 383 LESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEE-GKLLRSKMRALKDAAA 459 (487)
Q Consensus 383 ~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~ 459 (487)
.|.+++|+|+|.=|+..-|.+-++++.+ .|.|+.++ +.+.+.+++..+++|++ .+.|.+++.++-...+
T Consensus 336 LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 336 LEPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred hhHHHcCCCEEeCCccccHHHHHHHHHh-cCCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999 99999995 46889999999998843 3445555555444444
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.57 E-value=4.3e-05 Score=74.88 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=76.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhh-cCCCeeecccC
Q 011396 281 VLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT-KGVGLVVPSWS 359 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~ 359 (487)
.+.+..|... ..+....++++++..+.++++.-.+... ..+-....... ..+++.+.+++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-----------------~~~~~~~~~~~~~~~~v~~~G~~ 232 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-----------------DYFYREIAPELLDGPDIEYLGEV 232 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-----------------HHHHHHHHHhcccCCcEEEeCCC
Confidence 3445557752 2233455777787777775543332211 00001111111 24688899999
Q ss_pred Ccc---ccccccccccccc--ccc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHH
Q 011396 360 PQV---QVLRHGSTGGFLS--HCG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIAN 433 (487)
Q Consensus 360 pq~---~~L~~~~~~~~I~--HGG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~ 433 (487)
++. .+++.+++-++-+ +-| ..++.||+++|+|+|+.... .+...+.+ -..|...+ ..+++.+
T Consensus 233 ~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~-------~~~~l~~ 300 (335)
T cd03802 233 GGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD-------SVEELAA 300 (335)
T ss_pred CHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC-------CHHHHHH
Confidence 874 4677788433323 234 45899999999999987653 33334444 33677663 3889999
Q ss_pred HHHHhccC
Q 011396 434 YAKGLIQG 441 (487)
Q Consensus 434 ~i~~ll~~ 441 (487)
++.+++..
T Consensus 301 ~l~~l~~~ 308 (335)
T cd03802 301 AVARADRL 308 (335)
T ss_pred HHHHHhcc
Confidence 99998754
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.51 E-value=0.00019 Score=70.53 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCeeecccCCc-cccccccccccccccc----cchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.+..++ ..+++.++ ++|..+ ..+++.||+++|+|+|+... ..+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 35555554444 67888888 777543 35799999999999998543 333333433 4444443
Q ss_pred cCHHHHHHHHHHhccC
Q 011396 426 VGREDIANYAKGLIQG 441 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~ 441 (487)
-+.+++.+++.+++++
T Consensus 317 ~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 317 GDPEALAEAIEALLAD 332 (365)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3789999999999988
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.50 E-value=0.00036 Score=71.44 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCeeecccCCccc---ccccc--cccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQVQ---VLRHG--STGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~~---~L~~~--~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.+|.+.+++++.+ +++.+ +.++||.- |=..++.||+++|+|+|+.... .+...+.+ -..|+.++.
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~-~~~G~lv~~- 390 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIAN-CRNGLLVDV- 390 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcC-CCcEEEeCC-
Confidence 3567777777644 35544 11377653 3356999999999999987643 34444445 456777765
Q ss_pred CCCCcCHHHHHHHHHHhccC
Q 011396 422 ENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~ 441 (487)
-++++++++|.++++|
T Consensus 391 ----~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 391 ----LDLEAIASALEDALSD 406 (439)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 3789999999999998
No 81
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.46 E-value=0.00022 Score=78.19 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=68.4
Q ss_pred CCeeecccCCccc---cccccc--cccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQVQ---VLRHGS--TGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~~---~L~~~~--~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
..|.+.+++++.+ ++..++ .++||. -|=..++.||+++|+|+|+....+ ....+.. -.-|+.++.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~-g~nGlLVdP- 621 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRV-LDNGLLVDP- 621 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhcc-CCcEEEECC-
Confidence 4577778887643 444441 125654 333469999999999999986533 2223344 456777765
Q ss_pred CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 422 ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
-+++.|+++|.++++| +..++++.+-+.+..+ .-+-...++++++.+..
T Consensus 622 ----~D~eaLA~AL~~LL~D---pelr~~m~~~gr~~v~----~FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVAD---KQLWAECRQNGLKNIH----LFSWPEHCKTYLSRIAS 670 (1050)
T ss_pred ----CCHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHH
Confidence 3789999999999998 4444443333222221 13444455555544443
No 82
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.46 E-value=0.0002 Score=72.32 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=57.8
Q ss_pred cCCCeeecccCCc-ccccccccccccc--cc--ccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 349 KGVGLVVPSWSPQ-VQVLRHGSTGGFL--SH--CGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 349 ~~~~v~~~~~~pq-~~~L~~~~~~~~I--~H--GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
...+|.+.+++++ ..++..++ ++| ++ .|. +.+.||+++|+|+|+.+...+.. .+. -|.|+.+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC---
Confidence 3467888899987 67788888 555 33 344 36999999999999988643221 123 46677664
Q ss_pred CCCcCHHHHHHHHHHhccC
Q 011396 423 NGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~ 441 (487)
-+.++++++|.++++|
T Consensus 347 ---~~~~~la~ai~~ll~~ 362 (397)
T TIGR03087 347 ---ADPADFAAAILALLAN 362 (397)
T ss_pred ---CCHHHHHHHHHHHHcC
Confidence 2789999999999998
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.44 E-value=0.00027 Score=70.61 Aligned_cols=112 Identities=18% Similarity=0.089 Sum_probs=69.6
Q ss_pred CeeecccCCc-ccccccccccccc--cc--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCc
Q 011396 352 GLVVPSWSPQ-VQVLRHGSTGGFL--SH--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 352 ~v~~~~~~pq-~~~L~~~~~~~~I--~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++.+.++..+ ..++..+| ++| ++ |-..++.||+++|+|+|+.... .+...+.+ -..|..++. -
T Consensus 256 ~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~-~~~g~~~~~-----~ 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQH-GVTGALVPP-----G 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcC-CCceEEeCC-----C
Confidence 4555555444 67788888 555 33 4567999999999999996643 34445555 456777754 3
Q ss_pred CHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 427 GREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 427 ~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
+.++++++|.+++++ +..++... +..++...+.-+.+..++++.+-+++
T Consensus 324 d~~~la~~i~~l~~~---~~~~~~~~---~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 DAVALARALQPYVSD---PAARRAHG---AAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CHHHHHHHHHHHHhC---HHHHHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999988 44333222 22222111234555555555554443
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.42 E-value=0.0001 Score=72.85 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=57.9
Q ss_pred CCeeecccCCc-ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.++.+.++..+ ..++..++ ++|.- |..+++.||+++|+|+|+. |...+...+.+ .|..+..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~~~------- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIVPI------- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEeCC-------
Confidence 46777777655 67788888 44432 3367899999999999874 44445555555 4544332
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~ 453 (487)
-+.+++++++.++++++ +.+++.+.+
T Consensus 311 ~~~~~~~~~i~~ll~~~--~~~~~~~~~ 336 (360)
T cd04951 311 SDPEALANKIDEILKMS--GEERDIIGA 336 (360)
T ss_pred CCHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 47889999999998432 445544443
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=0.00056 Score=67.77 Aligned_cols=107 Identities=22% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCeeecccCCcc---cccccccccccccccc-----chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 350 GVGLVVPSWSPQV---QVLRHGSTGGFLSHCG-----WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~~L~~~~~~~~I~HGG-----~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.++|.+.+++|+. .++..++ +++.+.- .+++.||+++|+|+|+..... +...+.. .|...+..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecCc
Confidence 4688899999885 4555566 4544332 247999999999999876442 1111222 23333221
Q ss_pred CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 011396 422 ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQK 478 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 478 (487)
+.+.+++.++++| +..+.+. ++..++...+.-+.....+++++-
T Consensus 318 -------~~l~~~i~~l~~~---~~~~~~~---~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 318 -------DDLASLLEELEAD---PEEVSAM---AKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred -------hHHHHHHHHHHhC---HHHHHHH---HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1299999999988 4333332 222222212334545555555543
No 86
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.40 E-value=0.00014 Score=72.40 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCce-EEEEeCCccccccccccccCCCCCCCCCCchhHHHhh----cCCCeee
Q 011396 281 VLFVCFGSGGTLSPEQLNELALGLEMSGQRF-LWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT----KGVGLVV 355 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~v~~ 355 (487)
.+++..|.......+.+..+++++......+ ++.+|.... -+.+.+.. ...+|.+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~--------------------~~~l~~~~~~~~l~~~v~f 240 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD--------------------FEKCKAYSRELGIEQRIIW 240 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc--------------------HHHHHHHHHHcCCCCeEEE
Confidence 5566677753323344666777776654333 333443211 01222221 1347888
Q ss_pred cccCCc-----cccccccccccccc--c--ccchhHHHHHhhCCceeccc-cccccchhhHhhhhhccceEEeeecCCCC
Q 011396 356 PSWSPQ-----VQVLRHGSTGGFLS--H--CGWNSILESIVHGVPIIAWP-LYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 356 ~~~~pq-----~~~L~~~~~~~~I~--H--GG~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.+|.++ ...+..++ ++|. + |-..++.||+++|+|+|+.- ..+ ....+++ -..|..++.
T Consensus 241 ~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~----- 308 (359)
T PRK09922 241 HGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTP----- 308 (359)
T ss_pred ecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECC-----
Confidence 888754 22344456 5553 3 44679999999999999865 322 2234445 456777754
Q ss_pred cCHHHHHHHHHHhccCch
Q 011396 426 VGREDIANYAKGLIQGEE 443 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~ 443 (487)
-+.+++.++|.++++|++
T Consensus 309 ~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 309 GNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CCHHHHHHHHHHHHhCcc
Confidence 389999999999999853
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.34 E-value=8.5e-05 Score=73.41 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=60.4
Q ss_pred CCCeeecccCCcc---ccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 350 GVGLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 350 ~~~v~~~~~~pq~---~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
..++.+.+++|+. .++..++ ++|. -|..+++.||+++|+|+|+....+ ....+.+ .|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGAR--AFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhh--hhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC--
Confidence 4578888999874 5677788 4442 234568999999999999865421 1112223 2444433
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDA 457 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~ 457 (487)
-+.+++.+++.++++| +..+.++.+-+..
T Consensus 321 ---~~~~~~~~~i~~l~~~---~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ---LDPEALAAAIERLLED---PALREELRERGLA 349 (365)
T ss_pred ---CCHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 3789999999999998 6666555544443
No 88
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.30 E-value=0.0004 Score=68.70 Aligned_cols=85 Identities=18% Similarity=0.025 Sum_probs=57.6
Q ss_pred CCeeecccCCc-ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
+++.+.++..+ ..++..++ ++|.- |-..++.||+++|+|+|+....+ ....+.+ +.|.....
T Consensus 249 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~----- 315 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD----- 315 (358)
T ss_pred CcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-----
Confidence 46777777544 67788888 55532 55789999999999999866544 2223333 44444432
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKM 451 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a 451 (487)
-++++++++|.++++| +..+++.
T Consensus 316 ~~~~~~a~~i~~l~~~---~~~~~~~ 338 (358)
T cd03812 316 ESPEIWAEEILKLKSE---DRRERSS 338 (358)
T ss_pred CCHHHHHHHHHHHHhC---cchhhhh
Confidence 3679999999999998 5544433
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.30 E-value=4.1e-06 Score=82.42 Aligned_cols=140 Identities=12% Similarity=0.089 Sum_probs=79.3
Q ss_pred CCCcEEEEEecCCCCCC-H---HHHHHHHHHHHhc-CCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcC-
Q 011396 277 PSESVLFVCFGSGGTLS-P---EQLNELALGLEMS-GQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKG- 350 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 350 (487)
.+++.++|++=...... + ..+..+++++... +.++||.+..... ....+.+..+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~-------------------~~~~i~~~l~~~ 238 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR-------------------GSDIIIEKLKKY 238 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH-------------------HHHHHHHHHTT-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch-------------------HHHHHHHHhccc
Confidence 45678999885444444 3 3455566666665 6778888875322 00122222221
Q ss_pred CCeeecccCC---ccccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcC
Q 011396 351 VGLVVPSWSP---QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~p---q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+++.+..-++ ...+|++++ ++|+..| |-.-||.++|+|.|.+=..++.+.- +. .|..+.+. .+
T Consensus 239 ~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~---r~--~~~nvlv~------~~ 304 (346)
T PF02350_consen 239 DNVRLIEPLGYEEYLSLLKNAD--LVVGDSS-GIQEEAPSLGKPVVNIRDSGERQEG---RE--RGSNVLVG------TD 304 (346)
T ss_dssp TTEEEE----HHHHHHHHHHES--EEEESSH-HHHHHGGGGT--EEECSSS-S-HHH---HH--TTSEEEET------SS
T ss_pred CCEEEECCCCHHHHHHHHhcce--EEEEcCc-cHHHHHHHhCCeEEEecCCCCCHHH---Hh--hcceEEeC------CC
Confidence 3777765555 477888999 9999999 4444999999999999333332222 11 34444432 68
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHH
Q 011396 428 REDIANYAKGLIQGEEGKLLRSKMR 452 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~~~~~r~~a~ 452 (487)
+++|.+++++++++ .....+++
T Consensus 305 ~~~I~~ai~~~l~~---~~~~~~~~ 326 (346)
T PF02350_consen 305 PEAIIQAIEKALSD---KDFYRKLK 326 (346)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHhC---hHHHHhhc
Confidence 99999999999976 44444433
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.27 E-value=0.0022 Score=64.13 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=52.3
Q ss_pred CCeeecc-cCCcc---ccccccccccccc-c-----cc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEee
Q 011396 351 VGLVVPS-WSPQV---QVLRHGSTGGFLS-H-----CG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVK 419 (487)
Q Consensus 351 ~~v~~~~-~~pq~---~~L~~~~~~~~I~-H-----GG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
.|+++.. |+|+. .+|+.+| ++|. + -| .+++.||+++|+|+|+... ..+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccC-CCCeEEEC
Confidence 4566544 78864 4588888 6663 1 12 3579999999999998653 235556666 57888873
Q ss_pred ecCCCCcCHHHHHHHHHHhc
Q 011396 420 VNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 420 ~~~~~~~~~~~l~~~i~~ll 439 (487)
+.++++++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4788999998875
No 91
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.26 E-value=0.0065 Score=65.37 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=39.1
Q ss_pred ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhc
Q 011396 377 CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 377 GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 439 (487)
+-.-++.||+++|+|+|+.-.. .....+.+ -.-|..++.. ++++++++|.+++
T Consensus 655 pFGLvvLEAMAcGlPVVAT~~G----G~~EiV~d-g~tGfLVdp~-----D~eaLA~aL~~ll 707 (784)
T TIGR02470 655 AFGLTVLEAMTCGLPTFATRFG----GPLEIIQD-GVSGFHIDPY-----HGEEAAEKIVDFF 707 (784)
T ss_pred CCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHH
Confidence 4456999999999999986543 34445556 4568888753 6788999888775
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.23 E-value=0.0039 Score=62.54 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=69.8
Q ss_pred Ceee-cccCCc---cccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC-
Q 011396 352 GLVV-PSWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE- 422 (487)
Q Consensus 352 ~v~~-~~~~pq---~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~- 422 (487)
++++ .+++++ ..++..+| ++|. -|...++.||+++|+|+|+... ......+++ -+.|..++..+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCCCCC
Confidence 3543 356765 55677888 6553 2334578999999999998654 334555666 56788876543
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
+..-..+++.++|.++++| +..++++.+-+.+.. .+.-+.+...+++.+.+++
T Consensus 334 ~~~~~~~~l~~~i~~l~~~---~~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 334 DADGFQAELAKAINILLAD---PELAKKMGIAGRKRA---EEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred cccchHHHHHHHHHHHHhC---HHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHh
Confidence 0001128999999999988 444333322222211 1234555566666665554
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.23 E-value=2.6e-06 Score=70.07 Aligned_cols=116 Identities=22% Similarity=0.237 Sum_probs=77.4
Q ss_pred EEEEEecCCCCCCHHHH-----HHHHHHHHhcCC-ceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCe-
Q 011396 281 VLFVCFGSGGTLSPEQL-----NELALGLEMSGQ-RFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGL- 353 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v- 353 (487)
.+||+-||-.. ++.+ .+..+.|.+.+. +.+..+|.+.. ..++......+-.++
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~------------------~~~d~~~~~~k~~gl~ 64 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP------------------FFGDPIDLIRKNGGLT 64 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc------------------CCCCHHHhhcccCCeE
Confidence 79999999531 1221 234556666665 56667776522 011111111122233
Q ss_pred -eecccCCc-cccccccccccccccccchhHHHHHhhCCceeccccc----cccchhhHhhhhhccceEEee
Q 011396 354 -VVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLY----AEQKMNAVLLIDDLKVSFRVK 419 (487)
Q Consensus 354 -~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~G~G~~l~ 419 (487)
...+|.|- .+.++.++ ++|+|+|+||++|.|..|+|.|+++-- ..|..-|..+++ .|.=..=.
T Consensus 65 id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ 133 (170)
T KOG3349|consen 65 IDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCT 133 (170)
T ss_pred EEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEee
Confidence 34577886 67777788 999999999999999999999999953 479999999999 78765543
No 94
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=0.00038 Score=67.45 Aligned_cols=331 Identities=16% Similarity=0.123 Sum_probs=175.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchh
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVR 90 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (487)
|++|+++. |++=.+.-|-+|.+++.+..+.+..++.|.. ....+.....+..+. +.. |+....- ..
T Consensus 3 ~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQ----H~d~em~~~~le~~~--i~~---pdy~L~i----~~ 68 (383)
T COG0381 3 MLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQ----HRDYEMLDQVLELFG--IRK---PDYDLNI----MK 68 (383)
T ss_pred ceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecc----cccHHHHHHHHHHhC--CCC---CCcchhc----cc
Confidence 45666665 8999999999999999776337777777765 221112333333221 110 2111111 11
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEE--eCCCc-chHHHHHHHhCCCeEEEecchHHHHHHHhhccccccccc
Q 011396 91 METRITLTLARSLSSLRDALKVLAESTRLVALV--VDIFG-SAAFDVANEFGVPVYIFFTTTAMVLSLIFHLPELDVKFS 167 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI--~D~~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (487)
....+.......+..+.+.+.+. +||+|+ .|..+ .+++.+|..++||+.-+-.+
T Consensus 69 ~~~tl~~~t~~~i~~~~~vl~~~----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAG------------------- 125 (383)
T COG0381 69 PGQTLGEITGNIIEGLSKVLEEE----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAG------------------- 125 (383)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhh----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecc-------------------
Confidence 11234455566667777777765 999877 56544 45578999999997753221
Q ss_pred cCCCCCCCcccCCCCCccCcCCCCCCccccchHHHHHHHHHHhhhhcccEEEEcchhhhchHHHHHHhcCCCCCCCCCee
Q 011396 168 CEYRDVPEPVQLPGCVPINGRDFADPFQQRKNEAYRIFLSFSKQYLVAAGIMVNSFMDLETGAFKALMEGDSSFKPPPVY 247 (487)
Q Consensus 168 ~~~~~~~~~~~~pg~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~p~~~ 247 (487)
+-..... +|..+ .+.+...... .-+.++ +...-+-++...+ ..++.
T Consensus 126 --------------lRt~~~~-~PEE~-------NR~l~~~~S~-----~hfapt----e~ar~nLl~EG~~---~~~If 171 (383)
T COG0381 126 --------------LRTGDLY-FPEEI-------NRRLTSHLSD-----LHFAPT----EIARKNLLREGVP---EKRIF 171 (383)
T ss_pred --------------cccCCCC-CcHHH-------HHHHHHHhhh-----hhcCCh----HHHHHHHHHcCCC---ccceE
Confidence 1110100 12110 0111111111 111121 1111122333221 12577
Q ss_pred ecccCcCCC-----CCCCCCCccccccccc-cccCCCCcEEEEEecCCCCCCHHHHHHHHHHH----Hhc-CCceEEEEe
Q 011396 248 PVGPLVQTG-----STNETNNDRRHECLKW-LDEQPSESVLFVCFGSGGTLSPEQLNELALGL----EMS-GQRFLWVVR 316 (487)
Q Consensus 248 ~vGp~~~~~-----~~~~~~~~~~~~~~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~-~~~~i~~~~ 316 (487)
.+|-...+. .... .+.+...- +.. ..+..+.|++=--.+.. +.+..+.+++ +.. +..++...-
T Consensus 172 vtGnt~iDal~~~~~~~~----~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H 245 (383)
T COG0381 172 VTGNTVIDALLNTRDRVL----EDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVH 245 (383)
T ss_pred EeCChHHHHHHHHHhhhc----cchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 888543332 1111 11122211 222 22347877764433333 3344444444 444 344444433
Q ss_pred CCccccccccccccCCCCCCCCCCchhHHHhhcC-CCeee---cccCCccccccccccccccccccchhHHHHHhhCCce
Q 011396 317 SPHERAANATYFGIQSMKDPFDFLPKGFLDRTKG-VGLVV---PSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPI 392 (487)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~---~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~ 392 (487)
.+.. +-+-...+.+. .++.+ .+|.+...++.++- +++|-.| |-.-||-.+|+|.
T Consensus 246 ~~~~-------------------v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pv 303 (383)
T COG0381 246 PRPR-------------------VRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPV 303 (383)
T ss_pred CChh-------------------hhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcE
Confidence 3211 11111122332 24554 36777888999998 9999998 5678999999999
Q ss_pred eccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHH
Q 011396 393 IAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRAL 454 (487)
Q Consensus 393 l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l 454 (487)
+++=...+||. +++ .|.-+.+. .+.+.|.+++.+++++ +++.+++...
T Consensus 304 l~lR~~TERPE---~v~--agt~~lvg------~~~~~i~~~~~~ll~~---~~~~~~m~~~ 351 (383)
T COG0381 304 LVLRDTTERPE---GVE--AGTNILVG------TDEENILDAATELLED---EEFYERMSNA 351 (383)
T ss_pred EeeccCCCCcc---cee--cCceEEeC------ccHHHHHHHHHHHhhC---hHHHHHHhcc
Confidence 99999999998 333 35555553 5789999999999998 6676655443
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.19 E-value=0.00096 Score=67.76 Aligned_cols=72 Identities=8% Similarity=0.034 Sum_probs=50.7
Q ss_pred ecccCCcccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHH
Q 011396 355 VPSWSPQVQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGRED 430 (487)
Q Consensus 355 ~~~~~pq~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 430 (487)
+.++.+...++...| +||.= +=..++.||+++|+|+|+.-... + ..+.+ -+-|... -+.++
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~-------~~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY-------DDGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec-------CCHHH
Confidence 456655566887787 77765 45678999999999999876443 2 33333 3444444 26789
Q ss_pred HHHHHHHhccC
Q 011396 431 IANYAKGLIQG 441 (487)
Q Consensus 431 l~~~i~~ll~~ 441 (487)
+.+++.++|++
T Consensus 353 ~a~ai~~~l~~ 363 (462)
T PLN02846 353 FVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHcc
Confidence 99999999985
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.14 E-value=0.0037 Score=63.31 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCeeecccCCcc---ccccccccccccc--c-------ccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEE
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLS--H-------CGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFR 417 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~--H-------GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~ 417 (487)
++|.+.+|+|+. .++..++ ++|. + -|. .+++||+++|+|+|+....+ ....+.+ -..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~-~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEA-DKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcC-CCceEE
Confidence 468889999974 5677788 6653 2 243 57899999999999875432 3334555 457777
Q ss_pred eeecCCCCcCHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 418 VKVNENGLVGREDIANYAKGLIQ-GEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 418 l~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
++. -+.++++++|.++++ | ++.++++ ++..++.+.+.-+.+...+++.+.+++
T Consensus 352 v~~-----~d~~~la~ai~~l~~~d---~~~~~~~---~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 352 VPE-----NDAQALAQRLAAFSQLD---TDELAPV---VKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred eCC-----CCHHHHHHHHHHHHhCC---HHHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 754 378999999999998 7 4433222 222222222344555666666665543
No 97
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.14 E-value=0.0031 Score=65.30 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=98.7
Q ss_pred Ceeecc-cCcCCCCCCCCCCccccccccccccCCCCcEEEEEecCCCCCCHHHHHHHHHHHH--hc--CCceEEEEeCCc
Q 011396 245 PVYPVG-PLVQTGSTNETNNDRRHECLKWLDEQPSESVLFVCFGSGGTLSPEQLNELALGLE--MS--GQRFLWVVRSPH 319 (487)
Q Consensus 245 ~~~~vG-p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~ 319 (487)
++.+|| |+...-... . ...+..+-+.-.+++++|-+--||-..--...+..++++.+ .. +.+++.......
T Consensus 382 ~v~yVGHPL~d~i~~~-~---~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~ 457 (608)
T PRK01021 382 RTVYLGHPLVETISSF-S---PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK 457 (608)
T ss_pred CeEEECCcHHhhcccC-C---CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh
Confidence 789999 665543211 1 12222333333345679999999942222233444666665 33 334444322211
Q ss_pred cccccccccccCCCCCCCCCCchhHHHhhcCCC---eeecccCCccccccccccccccccccchhHHHHHhhCCceeccc
Q 011396 320 ERAANATYFGIQSMKDPFDFLPKGFLDRTKGVG---LVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP 396 (487)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P 396 (487)
. .+.+.+.....+ +.+..--...+++..|+ +.+.-.| ..+.|+..+|+|||++=
T Consensus 458 ~--------------------~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD--~aLaaSG-TaTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 458 Y--------------------DHLILEVLQQEGCLHSHIVPSQFRYELMRECD--CALAKCG-TIVLETALNQTPTIVTC 514 (608)
T ss_pred h--------------------HHHHHHHHhhcCCCCeEEecCcchHHHHHhcC--eeeecCC-HHHHHHHHhCCCEEEEE
Confidence 0 011222121111 12211001257788888 8888777 56789999999998742
Q ss_pred -cccccchhhHhhhhh-------------ccceEEee--ecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 397 -LYAEQKMNAVLLIDD-------------LKVSFRVK--VNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 397 -~~~DQ~~na~~v~~~-------------~G~G~~l~--~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
...=-+.-++++.+. ..+-..+- .++ .|++.|.+++ ++|.| +..+++.++=-+++++
T Consensus 515 K~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~---~tpe~La~~l-~lL~d---~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 515 QLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKD---FQPEEVAAAL-DILKT---SQSKEKQKDACRDLYQ 587 (608)
T ss_pred ecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCccc---CCHHHHHHHH-HHhcC---HHHHHHHHHHHHHHHH
Confidence 222222334444330 22222222 223 8999999997 78888 5555555555555555
Q ss_pred hcCCCCChHH
Q 011396 461 ALSPDGSSTK 470 (487)
Q Consensus 461 ~~~~~g~~~~ 470 (487)
.++++-.+-+
T Consensus 588 ~Lg~~~~~~~ 597 (608)
T PRK01021 588 AMNESASTMK 597 (608)
T ss_pred HhcCCCCCHH
Confidence 5555555433
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.011 Score=63.44 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=63.1
Q ss_pred CCeeecccCCc-cccccccccccccc---ccc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
++|.+.+|.++ ..+++.++ ++|. +.| .+++.||+++|+|+|+.... .....+.+ -..|+.++...
T Consensus 574 ~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~d-g~~GlLv~~~d--- 643 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQE-GVTGLTLPADT--- 643 (694)
T ss_pred CcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccC-CCCEEEeCCCC---
Confidence 56888888876 67788888 5553 444 56899999999999997643 34445555 45788887654
Q ss_pred cCHHHHHHHHHHhccCch-hHHHHHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEE-GKLLRSKMRALK 455 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~ 455 (487)
.+.+++.+++.+++.+.. -+.+++++++..
T Consensus 644 ~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 644 VTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 566677777666554311 156666655443
No 99
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=0.0018 Score=62.67 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=65.6
Q ss_pred cccccccccccccccccchhHHHHHhhCCceeccc-cccccchhhHhhhhh-----------ccceEEeeecCCCCcCHH
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP-LYAEQKMNAVLLIDD-----------LKVSFRVKVNENGLVGRE 429 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~-----------~G~G~~l~~~~~~~~~~~ 429 (487)
..++..|| +.+.-+| .-+.|+..+|+|||+.= ...=-+.-+.++..- ..+...+-.++ .+++
T Consensus 259 ~~a~~~aD--~al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~---~~pe 332 (381)
T COG0763 259 RKAFAAAD--AALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQED---CTPE 332 (381)
T ss_pred HHHHHHhh--HHHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhh---cCHH
Confidence 34566677 7777777 45789999999998642 111112233333330 12222222233 7999
Q ss_pred HHHHHHHHhccCch-hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 430 DIANYAKGLIQGEE-GKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 430 ~l~~~i~~ll~~~~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
.|.+++.+++.|.. -+.+++...++...++ .+++++.+.+.+++.++
T Consensus 333 ~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 333 NLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 99999999999942 2345555555555554 56677777777776653
No 100
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.08 E-value=0.0032 Score=62.92 Aligned_cols=110 Identities=20% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCeeecccC--Cc---ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWS--PQ---VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~--pq---~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
+++.+.++. ++ ..+++.++ +|+.- |-..++.||+++|+|+|+....+ ....+.+ -..|+..+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~-~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIED-GETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhccc-CCceEEeC--
Confidence 456666665 33 35677788 77643 33459999999999999876432 2334555 45666553
Q ss_pred CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 422 ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
+.++++.+|.+++++ +..++++.+-+..... +.-+....++++++-++
T Consensus 323 -----~~~~~a~~i~~ll~~---~~~~~~~~~~a~~~~~---~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -----TVEEAAVRILYLLRD---PELRRKMGANAREHVR---ENFLITRHLKDYLYLIS 370 (372)
T ss_pred -----CcHHHHHHHHHHHcC---HHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHH
Confidence 456788899999988 5555444333333211 23455556666665554
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.05 E-value=0.0012 Score=68.22 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=61.7
Q ss_pred ccccccccccccc---cccch-hHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHH
Q 011396 363 QVLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAK 436 (487)
Q Consensus 363 ~~L~~~~~~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~ 436 (487)
.+++.+| ++|. +-|.| +.+||+++|+|.|+....+ |...+...-.+ -+.|+.++. -+++++.++|.
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~-----~d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDD-----FNAEDLLRALR 423 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCC-----CCHHHHHHHHH
Confidence 5677888 6663 34544 8899999999999875432 32211111122 377888765 37899999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 437 GLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 437 ~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
+++....-+.. .+++++... ...-+-++.++++.+-.++.
T Consensus 424 ~~l~~~~~~~~---~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 424 RALELYRQPPL---WRALQRQAM---AQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHhcCHHH---HHHHHHHHh---ccCCChHHHHHHHHHHHHHH
Confidence 98862100221 223333322 24556666666666655544
No 102
>PLN00142 sucrose synthase
Probab=98.05 E-value=0.0048 Score=66.44 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=38.0
Q ss_pred ccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHH----hccC
Q 011396 377 CGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKG----LIQG 441 (487)
Q Consensus 377 GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~----ll~~ 441 (487)
-|. .++.||+++|+|+|+.... .....+++ -..|..++.. ++++++++|.+ +++|
T Consensus 677 EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~d-G~tG~LV~P~-----D~eaLA~aI~~lLekLl~D 736 (815)
T PLN00142 677 EAFGLTVVEAMTCGLPTFATCQG----GPAEIIVD-GVSGFHIDPY-----HGDEAANKIADFFEKCKED 736 (815)
T ss_pred cCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHHHHhcCC
Confidence 344 4899999999999886543 34445555 4568887753 57777777765 4567
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.99 E-value=0.0026 Score=64.71 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=53.7
Q ss_pred CCeeecccCCc---cccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhh---hhccceEEeee
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLI---DDLKVSFRVKV 420 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~~G~G~~l~~ 420 (487)
++|.+.+++|+ ..+|..++ ++|+ -+=.-++.||+++|+|+|+.-..+.- ...+. + -+.|+..
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~-g~~G~l~-- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDG-GPTGFLA-- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCC-CCceEEe--
Confidence 57888899886 45777788 5543 12234889999999999986543211 11222 3 3566654
Q ss_pred cCCCCcCHHHHHHHHHHhccCc
Q 011396 421 NENGLVGREDIANYAKGLIQGE 442 (487)
Q Consensus 421 ~~~~~~~~~~l~~~i~~ll~~~ 442 (487)
-+++++++++.++++++
T Consensus 377 -----~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -----STAEEYAEAIEKILSLS 393 (419)
T ss_pred -----CCHHHHHHHHHHHHhCC
Confidence 27899999999999863
No 104
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.96 E-value=0.0074 Score=63.30 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=51.4
Q ss_pred eeecccCCcc-ccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcC
Q 011396 353 LVVPSWSPQV-QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 353 v~~~~~~pq~-~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
+.+.++.++. .+++.++ +||. -|=..++.||+++|+|+|+....+.. .+.. -+.|. +. -+
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e-----~V~~-g~nGl-l~------~D 667 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNE-----FFRS-FPNCL-TY------KT 667 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCc-----eEee-cCCeE-ec------CC
Confidence 5566776654 4788888 6654 34466899999999999998765422 1223 22333 21 27
Q ss_pred HHHHHHHHHHhccCc
Q 011396 428 REDIANYAKGLIQGE 442 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~ 442 (487)
.+++.++|.++|.++
T Consensus 668 ~EafAeAI~~LLsd~ 682 (794)
T PLN02501 668 SEDFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999983
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.93 E-value=0.0066 Score=62.88 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=64.2
Q ss_pred CCeeec-ccCCc--ccccccccccccccc----ccchhHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVP-SWSPQ--VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~-~~~pq--~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.++.+. ++... ..+++.++ +++.- +-..+.+||+++|+|.|+....+ |...+...-.+ .|.|+.++.
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~- 426 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEG- 426 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCC-
Confidence 456543 44322 34677777 55532 22347899999999999876543 22222111113 458888865
Q ss_pred CCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 011396 422 ENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKW 479 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 479 (487)
-+.+++.+++.+++.. ..-++..+++++...+ ..-+-.+.++++++..
T Consensus 427 ----~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y 474 (476)
T cd03791 427 ----YNADALLAALRRALAL---YRDPEAWRKLQRNAMA---QDFSWDRSAKEYLELY 474 (476)
T ss_pred ----CCHHHHHHHHHHHHHH---HcCHHHHHHHHHHHhc---cCCChHHHHHHHHHHH
Confidence 3789999999998853 1112333344444332 3344445555555443
No 106
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.78 E-value=0.0042 Score=61.37 Aligned_cols=99 Identities=21% Similarity=0.238 Sum_probs=65.7
Q ss_pred ccccccccccccccccccchhHHHHHhhCCceeccc-cccccchhhHhhhhhccc------------eEEeeecCCCCcC
Q 011396 361 QVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWP-LYAEQKMNAVLLIDDLKV------------SFRVKVNENGLVG 427 (487)
Q Consensus 361 q~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~------------G~~l~~~~~~~~~ 427 (487)
-.+++..++ +.+.-.| ..|.|+..+|+|||++= ...=-+.-|+++.+ ... -..+-.++ .|
T Consensus 254 ~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~---~~ 326 (373)
T PF02684_consen 254 SYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQED---AT 326 (373)
T ss_pred hHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhccc---CC
Confidence 366788888 7777676 67889999999997653 33333445555544 222 12222233 89
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChH
Q 011396 428 REDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSST 469 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~ 469 (487)
++.|.+++.++|.| +..++..+...+.+++.++.+.++.
T Consensus 327 ~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 327 PENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCH
Confidence 99999999999999 5556666666666666555565554
No 107
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.77 E-value=0.0014 Score=64.93 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=81.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCc
Q 011396 282 LFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQ 361 (487)
Q Consensus 282 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq 361 (487)
.++..|+... .+....++++++..+.++++ +|.... .+.+.. ...+||.+.+++|+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g~~--------------------~~~l~~-~~~~~V~~~g~~~~ 252 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDGPE--------------------LDRLRA-KAGPNVTFLGRVSD 252 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECChh--------------------HHHHHh-hcCCCEEEecCCCH
Confidence 3455677532 24466677888777766444 443211 022222 23468999999997
Q ss_pred ---cccccccccccccccccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHH
Q 011396 362 ---VQVLRHGSTGGFLSHCGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 362 ---~~~L~~~~~~~~I~HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 437 (487)
..++..+++-++-+.-|. .++.||+++|+|+|+....+ ....+.+ -+.|+.++. -+.++++++|.+
T Consensus 253 ~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~-----~~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEE-----QTVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCC-----CCHHHHHHHHHH
Confidence 456878884333344444 46789999999999976533 3334555 567888764 378889999999
Q ss_pred hccCc
Q 011396 438 LIQGE 442 (487)
Q Consensus 438 ll~~~ 442 (487)
+++|+
T Consensus 323 l~~~~ 327 (351)
T cd03804 323 FEKNE 327 (351)
T ss_pred HHhCc
Confidence 99984
No 108
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.64 E-value=0.082 Score=52.87 Aligned_cols=109 Identities=13% Similarity=0.040 Sum_probs=64.7
Q ss_pred CCCeeecccCCc---ccccccccccccc------ccccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEee
Q 011396 350 GVGLVVPSWSPQ---VQVLRHGSTGGFL------SHCGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVK 419 (487)
Q Consensus 350 ~~~v~~~~~~pq---~~~L~~~~~~~~I------~HGG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
..||.+.+++|+ ..++.++++.++- +.++. +.+.|++++|+|+|..++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 468999999986 4467778854432 23332 458999999999998763 122333 33 33332
Q ss_pred ecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 420 VNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 420 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
. -+.+++.++|.+++.++.....+.+ . +..+ .-+-+...+++.+.|++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~~~~~~~~~-~---~~~~-----~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLEDGPARERRR-L---RLAA-----QNSWDARAAEMLEALQE 371 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcCCchHHHHH-H---HHHH-----HCCHHHHHHHHHHHHHh
Confidence 2 3789999999997765321222221 1 1222 23555566666666654
No 109
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.63 E-value=0.0043 Score=61.92 Aligned_cols=95 Identities=14% Similarity=0.130 Sum_probs=64.6
Q ss_pred CCeeecccCCc-ccccccccccccccc--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcC
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVG 427 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 427 (487)
.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+.. -..|..++. -+
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~-----~d 331 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPK-----GD 331 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCC-----Cc
Confidence 45777777666 678888885455555 34568999999999999865331 13344555 567777754 37
Q ss_pred HHHHHHHHHHhccCch-hHHHHHHHHHH
Q 011396 428 REDIANYAKGLIQGEE-GKLLRSKMRAL 454 (487)
Q Consensus 428 ~~~l~~~i~~ll~~~~-~~~~r~~a~~l 454 (487)
.++++++|.++++|++ ...+.+++.+.
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~ 359 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYEN 359 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8999999999999842 23444444444
No 110
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.60 E-value=0.075 Score=55.02 Aligned_cols=113 Identities=14% Similarity=0.008 Sum_probs=64.6
Q ss_pred CCeeecccCCc---cccccccccccccc---cccch-hHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.++.+....+. ..+++.+| ++|. +-|.| +.+||+++|+|.|+....+ |.-.+...-.. -+.|+.++.
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~-~~~G~l~~~- 421 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAE-SGTGFLFEE- 421 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCC-CCceEEeCC-
Confidence 34555444444 34677788 6553 22444 7899999999999876543 22211100012 277877765
Q ss_pred CCCCcCHHHHHHHHHHhcc----CchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 422 ENGLVGREDIANYAKGLIQ----GEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~----~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
-+++++.++|.+++. + +..+ +++++... ...-|-++.++++.+-.+
T Consensus 422 ----~d~~~la~~i~~~l~~~~~~---~~~~---~~~~~~~~---~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 422 ----YDPGALLAALSRALRLYRQD---PSLW---EALQKNAM---SQDFSWDKSAKQYVELYR 471 (473)
T ss_pred ----CCHHHHHHHHHHHHHHHhcC---HHHH---HHHHHHHh---ccCCCcHHHHHHHHHHHH
Confidence 478899999999886 4 3322 23333222 234555556666655444
No 111
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.55 E-value=0.0019 Score=65.39 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCeeecccCCcc---ccccccccccccccc----cchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLSHC----GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~HG----G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+|.+.+|+++. .++..++++++|... -..+++||+++|+|+|+... ......+.+ -+.|..+...
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~-~~~G~l~~~~-- 361 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDN-GGNGLLLSKD-- 361 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcC-CCcEEEeCCC--
Confidence 468888999975 455544444776443 35689999999999998653 334555666 4588887654
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
-+.+++.++|.++++| +..+.+ +++..++.+++.-+...+..+|+
T Consensus 362 --~~~~~la~~I~~ll~~---~~~~~~---m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 --PTPNELVSSLSKFIDN---EEEYQT---MREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred --CCHHHHHHHHHHHHhC---HHHHHH---HHHHHHHHHHHHcCHHHhHHHhc
Confidence 3889999999999987 443332 22333332223445555555443
No 112
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00055 Score=55.53 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCHHHHHH--HHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecc--
Q 011396 282 LFVCFGSGGTLSPEQLNE--LALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPS-- 357 (487)
Q Consensus 282 v~vs~Gs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~-- 357 (487)
+||+-||....-...... +.+-.+....++|..+|.... .|- .+..+.+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~-------------------kpv--------agl~v~~F~ 54 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI-------------------KPV--------AGLRVYGFD 54 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc-------------------ccc--------cccEEEeec
Confidence 789999963321222222 222223344578888987532 220 1222333
Q ss_pred cCCc-cccccccccccccccccchhHHHHHhhCCceecccccc--------ccchhhHhhhhhccceEEeeecC
Q 011396 358 WSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA--------EQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 358 ~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
+.+- ..+...++ ++|+|+|.||+..++..++|.|++|-.- .|..-|..+++ .+.-....+.+
T Consensus 55 ~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte 125 (161)
T COG5017 55 KEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTE 125 (161)
T ss_pred hHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCc
Confidence 3333 55666666 9999999999999999999999999532 57778888888 88777765433
No 113
>PLN02316 synthase/transferase
Probab=97.49 E-value=0.15 Score=56.74 Aligned_cols=117 Identities=7% Similarity=-0.089 Sum_probs=69.5
Q ss_pred CeeecccCCcc---cccccccccccc----ccccchhHHHHHhhCCceecccccc--ccchh-------hHhhhhhccce
Q 011396 352 GLVVPSWSPQV---QVLRHGSTGGFL----SHCGWNSILESIVHGVPIIAWPLYA--EQKMN-------AVLLIDDLKVS 415 (487)
Q Consensus 352 ~v~~~~~~pq~---~~L~~~~~~~~I----~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~~G~G 415 (487)
.|.+....+.. .+++.+| +|+ +-+=.-+.+||+++|+|.|+....+ |.-.. +..... -+-|
T Consensus 901 rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~tG 977 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EPNG 977 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CCce
Confidence 45544333432 5777777 777 3343568999999999998865543 22211 111111 2457
Q ss_pred EEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 416 FRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 416 ~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
+..+. .+++.|..+|.+++.+ |....+.+++..++.+...-|-.+.+++.++-.+.
T Consensus 978 flf~~-----~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 978 FSFDG-----ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 77654 4789999999999965 44444445555555544555655555555554443
No 114
>PLN02949 transferase, transferring glycosyl groups
Probab=97.43 E-value=0.19 Score=51.63 Aligned_cols=114 Identities=11% Similarity=0.059 Sum_probs=66.3
Q ss_pred CCeeecccCCcc---ccccccccccccc---cccch-hHHHHHhhCCceeccccccccchhhHhhhhh-cc-ceEEeeec
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLS---HCGWN-SILESIVHGVPIIAWPLYAEQKMNAVLLIDD-LK-VSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~---HGG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~-~G-~G~~l~~~ 421 (487)
++|.+.+++|+. .+|..++ ++|+ +-|.| ++.||+++|+|+|+....+--. ..+..+ .| .|...
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~--- 406 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA--- 406 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC---
Confidence 578888999864 4677787 6652 23333 7999999999999986543100 001110 01 23222
Q ss_pred CCCCcCHHHHHHHHHHhccCc-h-hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhh
Q 011396 422 ENGLVGREDIANYAKGLIQGE-E-GKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLES 484 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll~~~-~-~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 484 (487)
-+.++++++|.++++++ + -.++.+++++..+ .-|.++..+++.+.+++..+
T Consensus 407 ----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~--------~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 407 ----TTVEEYADAILEVLRMRETERLEIAAAARKRAN--------RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred ----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHHHHh
Confidence 26899999999999842 1 1234444443221 24555666666666665543
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.38 E-value=0.00092 Score=58.69 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCeeecccCC--c-ccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSP--Q-VQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~p--q-~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.++.+ + ..++..++ ++|+. |...++.||+++|+|+|+. +...+...+.. .+.|..++.
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~--- 142 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDP--- 142 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEEST---
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCC---
Confidence 4677888887 3 67788888 77766 6778999999999999974 35555666666 666888865
Q ss_pred CCcCHHHHHHHHHHhccC
Q 011396 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~ 441 (487)
.+.+++.++|.+++.+
T Consensus 143 --~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 143 --NDIEELADAIEKLLND 158 (172)
T ss_dssp --TSHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHCC
Confidence 4899999999999988
No 116
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.34 E-value=0.01 Score=59.46 Aligned_cols=115 Identities=9% Similarity=0.047 Sum_probs=75.1
Q ss_pred CCeeecccCCc---ccccccccccccccc----ccc-hhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecC
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLSH----CGW-NSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~H----GG~-gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 422 (487)
.++.+.+++|+ ..+++.+| ++|.- .|. .++.||+++|+|+|+.... .+...+.+ -..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEeCC-
Confidence 46778889885 45688888 55532 343 5788999999999987653 34444555 4567755433
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhh
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 483 (487)
.+.++++++|.++++| +..++ +++..++...+.-+.+...+++.+.+++.+
T Consensus 329 ---~d~~~la~~I~~ll~d---~~~~~----~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 329 ---MTSDSIISDINRTLAD---PELTQ----IAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred ---CCHHHHHHHHHHHHcC---HHHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 4899999999999998 44332 233332222234566667777777776643
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.34 E-value=0.069 Score=55.46 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=62.3
Q ss_pred CCeeecccCCccccccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec--CCC
Q 011396 351 VGLVVPSWSPQVQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN--ENG 424 (487)
Q Consensus 351 ~~v~~~~~~pq~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~--~~~ 424 (487)
++|.+.++.+...+++.++ ++|. -|-..++.||+++|+|+|+..... .+...+++ -..|..++.. .+.
T Consensus 376 ~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCccccc
Confidence 4577788887788888888 6664 333569999999999999866431 23334445 3467766521 100
Q ss_pred CcC-HHHHHHHHHHhccCchhHHHHHHHHHH
Q 011396 425 LVG-REDIANYAKGLIQGEEGKLLRSKMRAL 454 (487)
Q Consensus 425 ~~~-~~~l~~~i~~ll~~~~~~~~r~~a~~l 454 (487)
.-+ .++++++|.++++++....+.+++.+.
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~ 480 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQI 480 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 012 788999999999652234444555443
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.30 E-value=0.003 Score=63.71 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=90.1
Q ss_pred CCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhc-----CC
Q 011396 277 PSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTK-----GV 351 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~ 351 (487)
+++.++|.||.......++.+..-.+-|++.+.-.+|....+.. -...+..... .+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-------------------~~~~l~~~~~~~Gv~~~ 342 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-------------------GEARLRRRFAAHGVDPD 342 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-------------------HHHHHHHHHHHTTS-GG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-------------------HHHHHHHHHHHcCCChh
Confidence 34569999999999999999999999999999999999876432 0122222221 23
Q ss_pred CeeecccCCcccc---cccccccccc---ccccchhHHHHHhhCCceecccccc-ccchhhHhhhhhccceEEeeecCCC
Q 011396 352 GLVVPSWSPQVQV---LRHGSTGGFL---SHCGWNSILESIVHGVPIIAWPLYA-EQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 352 ~v~~~~~~pq~~~---L~~~~~~~~I---~HGG~gt~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.+++..+.|+.+- +..+| +++ ..+|.+|++|||..|||+|.+|=.. =...-+..+.. +|+.-.+-
T Consensus 343 Ri~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA----- 414 (468)
T PF13844_consen 343 RIIFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA----- 414 (468)
T ss_dssp GEEEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB------
T ss_pred hEEEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC-----
Confidence 4666666665433 33344 443 4678899999999999999999322 12223446666 77776553
Q ss_pred CcCHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 425 LVGREDIANYAKGLIQGEEGKLLRSKMR-ALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~~~~~~~r~~a~-~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
.+.++-.+.--++-+| ..++++.+ ++.+...+ |.--+...+++.+++.
T Consensus 415 -~s~~eYv~~Av~La~D---~~~l~~lR~~Lr~~~~~------SpLfd~~~~ar~lE~a 463 (468)
T PF13844_consen 415 -DSEEEYVEIAVRLATD---PERLRALRAKLRDRRSK------SPLFDPKRFARNLEAA 463 (468)
T ss_dssp -SSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH------SGGG-HHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhh------CCCCCHHHHHHHHHHH
Confidence 3556655555566667 44443333 23333333 2233455555555554
No 119
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.28 E-value=0.13 Score=53.27 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=46.5
Q ss_pred CCeeecccCCc-cccccccccccccc---ccc-chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
++|.+.+|..+ ..+|+.++ +||. .-| .+++.||+++|+|+|+... ..+...+.+ -..|..++..
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~~ 523 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDDA 523 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECCC
Confidence 57888888665 66788888 7774 234 6699999999999997664 345555666 5778887653
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.24 E-value=0.035 Score=50.38 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=35.2
Q ss_pred CCCeeecccCCc----ccccccccccccccccc----chhHHHHHhhCCceeccccccc
Q 011396 350 GVGLVVPSWSPQ----VQVLRHGSTGGFLSHCG----WNSILESIVHGVPIIAWPLYAE 400 (487)
Q Consensus 350 ~~~v~~~~~~pq----~~~L~~~~~~~~I~HGG----~gt~~eal~~GvP~l~~P~~~D 400 (487)
..|+.+.+++++ ..++..++ ++++-.. .+++.||+++|+|+|+.+....
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 347777777632 33444466 7776665 7899999999999999887553
No 121
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.18 E-value=0.089 Score=54.49 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=58.2
Q ss_pred CCeeecccCCcccccccccccccccc----ccchhHHHHHhhCCceeccccccccchhhHhhhhhc-----c-ceEEeee
Q 011396 351 VGLVVPSWSPQVQVLRHGSTGGFLSH----CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDL-----K-VSFRVKV 420 (487)
Q Consensus 351 ~~v~~~~~~pq~~~L~~~~~~~~I~H----GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~-----G-~G~~l~~ 420 (487)
++|.+.+...-..+++.++ ++|.- |-..++.||+++|+|+|+... ......+.+ . | .|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~-~~~~~~g~~G~lv~~ 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEG-ADDEALGPAGEVVPP 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcC-CcccccCCceEEECC
Confidence 5777777555577787777 55432 445799999999999998543 233333333 2 2 6777654
Q ss_pred cCCCCcCHHHHHHHHHHhccCchhHHHHHHH
Q 011396 421 NENGLVGREDIANYAKGLIQGEEGKLLRSKM 451 (487)
Q Consensus 421 ~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a 451 (487)
-+.++++++|.++++| +..++++
T Consensus 427 -----~d~~~la~ai~~ll~~---~~~~~~~ 449 (475)
T cd03813 427 -----ADPEALARAILRLLKD---PELRRAM 449 (475)
T ss_pred -----CCHHHHHHHHHHHhcC---HHHHHHH
Confidence 4789999999999998 4444433
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.14 E-value=0.00087 Score=56.20 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred CCeeecccCCc-ccccccccccccccc---ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCc
Q 011396 351 VGLVVPSWSPQ-VQVLRHGSTGGFLSH---CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 351 ~~v~~~~~~pq-~~~L~~~~~~~~I~H---GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
++|.+.+|+++ .+++..+++.+..+. +-.+++.|++.+|+|+|+.+. .....++. .+.|..+ . -
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~--~----~ 120 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLV--A----N 120 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE---T----T
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEE--C----C
Confidence 48889899875 777888886665542 235899999999999999776 13334444 5777776 2 4
Q ss_pred CHHHHHHHHHHhccC
Q 011396 427 GREDIANYAKGLIQG 441 (487)
Q Consensus 427 ~~~~l~~~i~~ll~~ 441 (487)
+++++.++|.+++.|
T Consensus 121 ~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 121 DPEELAEAIERLLND 135 (135)
T ss_dssp -HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999865
No 123
>PLN02939 transferase, transferring glycosyl groups
Probab=96.95 E-value=0.45 Score=52.35 Aligned_cols=82 Identities=6% Similarity=0.026 Sum_probs=53.1
Q ss_pred CCeeecccCCcc---ccccccccccccc----cccchhHHHHHhhCCceecccccc--ccchh--hHhh-hhhccceEEe
Q 011396 351 VGLVVPSWSPQV---QVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYA--EQKMN--AVLL-IDDLKVSFRV 418 (487)
Q Consensus 351 ~~v~~~~~~pq~---~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~G~G~~l 418 (487)
++|.+..+.+.. .+++.+| +||. -+-..+.+||+++|+|.|+....+ |-..+ ...+ .. -+-|+..
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEEe
Confidence 457777777763 4788888 7773 233458999999999999876644 22211 1111 12 2556666
Q ss_pred eecCCCCcCHHHHHHHHHHhcc
Q 011396 419 KVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 419 ~~~~~~~~~~~~l~~~i~~ll~ 440 (487)
+. .+++.+.++|.+++.
T Consensus 914 ~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFN 930 (977)
T ss_pred cC-----CCHHHHHHHHHHHHH
Confidence 54 478889988888764
No 124
>PRK14099 glycogen synthase; Provisional
Probab=96.84 E-value=0.65 Score=48.18 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=60.9
Q ss_pred eecccCCc-cccc-cccccccccc---ccc-chhHHHHHhhCCceecccccc--ccchhhHhhhh--hccceEEeeecCC
Q 011396 354 VVPSWSPQ-VQVL-RHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYA--EQKMNAVLLID--DLKVSFRVKVNEN 423 (487)
Q Consensus 354 ~~~~~~pq-~~~L-~~~~~~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~--~~G~G~~l~~~~~ 423 (487)
.+.+|-.+ ..++ +.+| +||. +=| ..+.+||+++|+|.|+....+ |-........+ +-+.|+.++.
T Consensus 354 ~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---
Confidence 34566333 2223 3456 6663 334 447789999998777754422 32211111111 0156777765
Q ss_pred CCcCHHHHHHHHHH---hccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhh
Q 011396 424 GLVGREDIANYAKG---LIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 424 ~~~~~~~l~~~i~~---ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 483 (487)
-+.+++.++|.+ +++| +..++++. +..+. ..-|-.+.+++.++-.++..
T Consensus 429 --~d~~~La~ai~~a~~l~~d---~~~~~~l~---~~~~~---~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 429 --VTADALAAALRKTAALFAD---PVAWRRLQ---RNGMT---TDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred --CCHHHHHHHHHHHHHHhcC---HHHHHHHH---HHhhh---hcCChHHHHHHHHHHHHHHH
Confidence 478999999987 5666 44333322 22221 34555666666666555543
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.46 E-value=1.2 Score=45.07 Aligned_cols=59 Identities=17% Similarity=0.074 Sum_probs=38.8
Q ss_pred cccccccccccc----cccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHH
Q 011396 364 VLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYA 435 (487)
Q Consensus 364 ~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i 435 (487)
+++.+| +||. -|-..++.||+++|+|+|+....+ .. .+.. .+.|+.++.. +.++|++++
T Consensus 303 ~y~~aD--vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~-Eiv~-~~~G~lv~~~-----d~~~La~~~ 365 (405)
T PRK10125 303 ALNQMD--ALVFSSRVDNYPLILCEALSIGVPVIATHSDA----AR-EVLQ-KSGGKTVSEE-----EVLQLAQLS 365 (405)
T ss_pred HHHhCC--EEEECCccccCcCHHHHHHHcCCCEEEeCCCC----hH-HhEe-CCcEEEECCC-----CHHHHHhcc
Confidence 344455 4443 455678999999999999988764 11 2333 3578887654 567777643
No 126
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.37 E-value=0.074 Score=54.41 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhh-----cCCC
Q 011396 278 SESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT-----KGVG 352 (487)
Q Consensus 278 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 352 (487)
++.+||++|--....+++.++.-++-|++.+.-++|.+..+-. ++ ..|+.-. .++.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~-----------------ge--~rf~ty~~~~Gl~p~r 817 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV-----------------GE--QRFRTYAEQLGLEPDR 817 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc-----------------ch--HHHHHHHHHhCCCccc
Confidence 4569999999888899999999999999999999999987632 00 1221111 1223
Q ss_pred eeecccCCc-----cccccccccccccccccchhHHHHHhhCCceeccccccccch-hhHhhhhhccceEEeeecCCCCc
Q 011396 353 LVVPSWSPQ-----VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKM-NAVLLIDDLKVSFRVKVNENGLV 426 (487)
Q Consensus 353 v~~~~~~pq-----~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~-na~~v~~~~G~G~~l~~~~~~~~ 426 (487)
|++.+-+.- ...|..-.++-+.+ .|..|.++.|..|+|||.+|.-.---. -+..+.. .|+|-.+-+
T Consensus 818 iifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------ 889 (966)
T KOG4626|consen 818 IIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------ 889 (966)
T ss_pred eeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------
Confidence 443332221 22232222233333 468899999999999999997653333 3446667 899986643
Q ss_pred CHHHHHHHHHHhccC
Q 011396 427 GREDIANYAKGLIQG 441 (487)
Q Consensus 427 ~~~~l~~~i~~ll~~ 441 (487)
+.++-.+.--++-+|
T Consensus 890 ~~eEY~~iaV~Latd 904 (966)
T KOG4626|consen 890 NREEYVQIAVRLATD 904 (966)
T ss_pred hHHHHHHHHHHhhcC
Confidence 445544444445555
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.35 E-value=0.018 Score=56.61 Aligned_cols=108 Identities=15% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCeeecccCCcccc---cccccccccccc-------cc------chhHHHHHhhCCceeccccccccchhhHhhhhhccc
Q 011396 351 VGLVVPSWSPQVQV---LRHGSTGGFLSH-------CG------WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKV 414 (487)
Q Consensus 351 ~~v~~~~~~pq~~~---L~~~~~~~~I~H-------GG------~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 414 (487)
+||.+.+|+|+.++ |.. +.+++... +. -+-+.+.+++|+|+|+. ++...+..+++ .++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NGL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CCc
Confidence 47888899998655 333 32232221 11 12277789999999985 45667788888 899
Q ss_pred eEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 011396 415 SFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 415 G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
|+.++ +.+++.+++.++. +++-..|++|++++++.+++ |.-..+++++++
T Consensus 281 G~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~ 330 (333)
T PRK09814 281 GFVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAI 330 (333)
T ss_pred eEEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH
Confidence 99995 4568999998864 43346789999999999984 444444544444
No 128
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.22 E-value=0.0068 Score=47.39 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred cccccccccccCCCCcEEEEEecCCCCC---CH--HHHHHHHHHHHhcCCceEEEEeCCcc
Q 011396 265 RRHECLKWLDEQPSESVLFVCFGSGGTL---SP--EQLNELALGLEMSGQRFLWVVRSPHE 320 (487)
Q Consensus 265 ~~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (487)
.+..+..|+...+.++.|+||+||.... .. ..+..++++++..+.++|.++.....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 3456668999989999999999997443 22 47888999999999999999887544
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.15 Score=51.92 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=102.5
Q ss_pred CCCcEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCC----
Q 011396 277 PSESVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVG---- 352 (487)
Q Consensus 277 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 352 (487)
+++-+||+||+......++.+..-..-|+..+.-++|..+++.+ ..+...++...+..+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-----------------~~~~~~l~~la~~~Gv~~e 489 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-----------------AEINARLRDLAEREGVDSE 489 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-----------------HHHHHHHHHHHHHcCCChh
Confidence 34569999999999999999999888888999999999988533 122233333333323
Q ss_pred -eeecccCCc---cccccccccccccc---cccchhHHHHHhhCCceeccccccccch--hhHhhhhhccceEEeeecCC
Q 011396 353 -LVVPSWSPQ---VQVLRHGSTGGFLS---HCGWNSILESIVHGVPIIAWPLYAEQKM--NAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 353 -v~~~~~~pq---~~~L~~~~~~~~I~---HGG~gt~~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~ 423 (487)
+++.+-.|. .+-+.-+| +|+. =||+.|+.|+|-.|||+|..+ ++|+- |+.-+..-+|+-..+-..
T Consensus 490 RL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s-- 563 (620)
T COG3914 490 RLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADS-- 563 (620)
T ss_pred heeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCC--
Confidence 344444442 33344455 5553 499999999999999999988 88875 555444425554444321
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
..+=|..+|. +=+| |...++.+.+++.. ..-+.--..+.|.++++.+
T Consensus 564 ---~~dYV~~av~-~g~d------ral~q~~r~~l~~~--r~tspL~d~~~far~le~~ 610 (620)
T COG3914 564 ---RADYVEKAVA-FGSD------RALRQQVRAELKRS--RQTSPLFDPKAFARKLETL 610 (620)
T ss_pred ---HHHHHHHHHH-hccc------HHHHHhhHHHHHhc--cccCcccCHHHHHHHHHHH
Confidence 2344555553 2222 33334444444431 1122223455666666554
No 130
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.73 E-value=0.18 Score=51.17 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=63.5
Q ss_pred cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEE-eeecCCCCcCHHHHHHHHHHhcc
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFR-VKVNENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~~i~~ll~ 440 (487)
..++++|+ ++|..==+ ++.-|+..|+|.+.+++. +-....+.. +|..-. .+.++ ++.++|.+.+++++.
T Consensus 322 ~~iIs~~d--l~ig~RlH-a~I~a~~~gvP~i~i~Y~---~K~~~~~~~-lg~~~~~~~~~~---l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 322 GKILGACE--LTVGTRLH-SAIISMNFGTPAIAINYE---HKSAGIMQQ-LGLPEMAIDIRH---LLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHhhCC--EEEEecch-HHHHHHHcCCCEEEeeeh---HHHHHHHHH-cCCccEEechhh---CCHHHHHHHHHHHHh
Confidence 47888888 88853322 355688899999999983 444445577 888866 56666 899999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHh
Q 011396 441 GEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 441 ~~~~~~~r~~a~~l~~~~~~ 460 (487)
|. +.++++.++-.+++++
T Consensus 392 ~r--~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 392 QL--PALNARLAEAVSRERQ 409 (426)
T ss_pred CH--HHHHHHHHHHHHHHHH
Confidence 86 5666666666565553
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.39 E-value=2.6 Score=40.06 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=64.5
Q ss_pred CCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHHHHH
Q 011396 20 PGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRITLTL 99 (487)
Q Consensus 20 ~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+-.-|+--+-.|.++|.++ ||+|.+.+-+. .....+...+ ++.+..+..... ..........
T Consensus 8 ~n~~hvhfFk~lI~elekk-G~ev~iT~rd~--------~~v~~LLd~y--gf~~~~Igk~g~-------~tl~~Kl~~~ 69 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKK-GHEVLITCRDF--------GVVTELLDLY--GFPYKSIGKHGG-------VTLKEKLLES 69 (346)
T ss_pred CCcchhhHHHHHHHHHHhC-CeEEEEEEeec--------CcHHHHHHHh--CCCeEeecccCC-------ccHHHHHHHH
Confidence 3345777788999999887 99999887664 1344455544 344444432110 1111111111
Q ss_pred HHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecc
Q 011396 100 ARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
......+. +++.+.+||+.+. -+.+.++.+|--+|+|.+.+.-+
T Consensus 70 ~eR~~~L~----ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 70 AERVYKLS----KIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHH----HHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 11222233 3444569999999 66888999999999999887543
No 132
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.23 E-value=0.22 Score=43.50 Aligned_cols=115 Identities=19% Similarity=0.111 Sum_probs=56.3
Q ss_pred cCCCccCHHHHHHHHHHH-HhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHH
Q 011396 18 PTPGIGHLIPQVELAKRL-VHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRIT 96 (487)
Q Consensus 18 ~~~~~GH~~P~l~LA~~L-~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (487)
..++.||+.-|+.|.+.+ .++..++..+++... ...................+..++... ...+ .......
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d----~~S~~k~~~~~~~~~~~~~~~~~~r~r--~v~q--~~~~~~~ 75 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGD----KQSRSKAEQLEKSSSKRHKILEIPRAR--EVGQ--SYLTSIF 75 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCC----cccHHHHHHHHHhccccceeeccceEE--Eech--hhHhhHH
Confidence 347889999999999999 333245655565444 111111111111111111222232110 0011 1111223
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch--HHHHHHHh------CCCeEEE
Q 011396 97 LTLARSLSSLRDALKVLAESTRLVALVVDIFGSA--AFDVANEF------GVPVYIF 145 (487)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~--~~~~A~~l------gIP~v~~ 145 (487)
..+......+.-..+ .+||+||+..-..+ ...+|+.+ |.+.|.+
T Consensus 76 ~~l~~~~~~~~il~r-----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 76 TTLRAFLQSLRILRR-----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHHHHHHHHHH-----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 333333333322222 28999998864444 44688888 9997764
No 133
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.20 E-value=0.21 Score=41.83 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=58.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHH
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMET 93 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (487)
|++++.....| ...+++.|.++ ||+|++++... ....... ..++....++.. .. .
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~---------~~~~~~~--~~~i~~~~~~~~----~k-~----- 56 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRN---------DYEKYEI--IEGIKVIRLPSP----RK-S----- 56 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCC---------CchhhhH--hCCeEEEEecCC----CC-c-----
Confidence 66666655566 45779999887 99999999865 1111111 346677776422 00 0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch---HHHHHHHhC-CCeEEE
Q 011396 94 RITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSA---AFDVANEFG-VPVYIF 145 (487)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~---~~~~A~~lg-IP~v~~ 145 (487)
....+. . -.+ ..++++.+||+|.+...... +..+++..+ +|++..
T Consensus 57 -~~~~~~-~-~~l----~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 57 -PLNYIK-Y-FRL----RKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred -cHHHHH-H-HHH----HHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 111111 1 133 34445669999987764442 334667788 888764
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.89 E-value=0.06 Score=45.88 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHHHHHHHhHHHH
Q 011396 27 PQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRITLTLARSLSSL 106 (487)
Q Consensus 27 P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (487)
-+..|+++|.++ ||+|+++++.. ..... .....++.+..++..... ....... ....+
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~ 63 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQP---------DPEDD-EEEEDGVRVHRLPLPRRP---WPLRLLR--------FLRRL 63 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE------------GGG--SEEETTEEEEEE--S-SS---SGGGHCC--------HHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCC---------CCccc-ccccCCceEEeccCCccc---hhhhhHH--------HHHHH
Confidence 467899999888 99999999765 11110 011235666666543221 1111100 11222
Q ss_pred HHHHHHHhcCCCceEEEeCCCcc-hHHHHHH-HhCCCeEEEec
Q 011396 107 RDALKVLAESTRLVALVVDIFGS-AAFDVAN-EFGVPVYIFFT 147 (487)
Q Consensus 107 ~~~l~~~~~~~~pD~vI~D~~~~-~~~~~A~-~lgIP~v~~~~ 147 (487)
.+.+ ..+..+||+|.+..... ....+++ ..++|++....
T Consensus 64 ~~~l--~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 64 RRLL--AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHC--HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHH--hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 2222 11566999998776322 2233444 78999887543
No 135
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.60 E-value=3.6 Score=39.13 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=32.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~ 50 (487)
+|+++-..+.|++.-+.++.++|.++. +-+|++++.+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 488888889999999999999997762 37999999875
No 136
>PHA01630 putative group 1 glycosyl transferase
Probab=94.57 E-value=0.61 Score=45.72 Aligned_cols=107 Identities=7% Similarity=-0.008 Sum_probs=59.4
Q ss_pred ccccccccccccc--cc--ccchhHHHHHhhCCceecccccc--ccch---hhHhhhhh----------ccceEEeeecC
Q 011396 362 VQVLRHGSTGGFL--SH--CGWNSILESIVHGVPIIAWPLYA--EQKM---NAVLLIDD----------LKVSFRVKVNE 422 (487)
Q Consensus 362 ~~~L~~~~~~~~I--~H--GG~gt~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~~----------~G~G~~l~~~~ 422 (487)
..+++.+| ++| ++ |...++.||+++|+|+|+.-..+ |.-. |+..+... .++|..++
T Consensus 204 ~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~--- 278 (331)
T PHA01630 204 YSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLD--- 278 (331)
T ss_pred HHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccC---
Confidence 34577777 554 22 32568999999999999976543 3221 22111110 12444443
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
.+.+++.+++.+++.|.+-+..+++...-+.... +.-+.++..+++.+-++
T Consensus 279 ---~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 279 ---PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILE 329 (331)
T ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHh
Confidence 3667888888888876321344444444443333 34565555666655554
No 137
>PRK14098 glycogen synthase; Provisional
Probab=94.36 E-value=0.86 Score=47.33 Aligned_cols=113 Identities=14% Similarity=0.014 Sum_probs=67.9
Q ss_pred CCeeecccCCc---ccccccccccccccc---ccc-hhHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeec
Q 011396 351 VGLVVPSWSPQ---VQVLRHGSTGGFLSH---CGW-NSILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 351 ~~v~~~~~~pq---~~~L~~~~~~~~I~H---GG~-gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 421 (487)
.+|.+..+.+. ..+++.+| +++.- =|. .+.+||+++|+|.|+....+ |...+ ..++ -+.|+..+.
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~-~~~G~l~~~- 435 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSED-KGSGFIFHD- 435 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCC-CCceeEeCC-
Confidence 46777777776 35778888 66632 232 37789999999988876543 22111 1123 366777654
Q ss_pred CCCCcCHHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 422 ENGLVGREDIANYAKGLI---QGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 422 ~~~~~~~~~l~~~i~~ll---~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
-+++++.++|.+++ .| +. ..+++++ +++...-|-++.++++.+-.++.
T Consensus 436 ----~d~~~la~ai~~~l~~~~~---~~---~~~~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 436 ----YTPEALVAKLGEALALYHD---EE---RWEELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred ----CCHHHHHHHHHHHHHHHcC---HH---HHHHHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 47899999999876 34 22 2222222 22335566666667776655544
No 138
>PHA01633 putative glycosyl transferase group 1
Probab=93.89 E-value=1.2 Score=43.49 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCeeec---ccCCc---cccccccccccccc----cccchhHHHHHhhCCceeccccc------ccc------chhhHhh
Q 011396 351 VGLVVP---SWSPQ---VQVLRHGSTGGFLS----HCGWNSILESIVHGVPIIAWPLY------AEQ------KMNAVLL 408 (487)
Q Consensus 351 ~~v~~~---~~~pq---~~~L~~~~~~~~I~----HGG~gt~~eal~~GvP~l~~P~~------~DQ------~~na~~v 408 (487)
++|.+. +++++ ..+++.++ +||. -|=..++.||+++|+|+|+--.. +|+ .++....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 356665 44454 35677777 6764 23356899999999999886432 232 2222222
Q ss_pred hh-hccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 409 ID-DLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 409 ~~-~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.+ +.|.|..++. .++++++++|.+++..
T Consensus 279 ~~~~~g~g~~~~~-----~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 279 YDKEHGQKWKIHK-----FQIEDMANAIILAFEL 307 (335)
T ss_pred cCcccCceeeecC-----CCHHHHHHHHHHHHhc
Confidence 21 1466666653 6999999999999543
No 139
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.72 E-value=1.3 Score=43.75 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=60.2
Q ss_pred CcEEEEEecCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCee-
Q 011396 279 ESVLFVCFGSG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLV- 354 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~- 354 (487)
++.|.+..|+. ..++.+.+.++++.|...+.++++.-+....+ ..+.+.+.......+++
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e----------------~~~~~~i~~~~~~~~~~~ 244 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDE----------------LAMVNEIAQGCQTPRVTS 244 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHH----------------HHHHHHHHhhCCCCcccc
Confidence 45677777774 45677888889988876677766543322110 00111122111111221
Q ss_pred ecc--cCCc-cccccccccccccccccchhHHHHHhhCCceecc
Q 011396 355 VPS--WSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 355 ~~~--~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~ 395 (487)
+.+ .+.+ .+++++++ +||+. -.|.++=|.+.|+|.|.+
T Consensus 245 l~g~~sL~el~ali~~a~--l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 245 LAGKLTLPQLAALIDHAR--LFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred cCCCCCHHHHHHHHHhCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 222 2334 77899999 99998 679999999999999876
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.58 E-value=6.5 Score=38.09 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=42.1
Q ss_pred CccccccccccccccccccchhHHHHHhhCCceeccccccccch----hhHhhhhhccceEEeeec
Q 011396 360 PQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKM----NAVLLIDDLKVSFRVKVN 421 (487)
Q Consensus 360 pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~----na~~v~~~~G~G~~l~~~ 421 (487)
|+...|..++. +|||---.+=+.||+..|+|+.+++... +.. ....+++ .|+-...+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCCc
Confidence 46778888883 6777777888999999999999999876 322 2335556 5666655443
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.19 E-value=0.85 Score=35.07 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=51.2
Q ss_pred cccchhHHHHHhhCCceeccccccccchhhHhhhhhcc-ceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHH-HHH
Q 011396 376 HCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLK-VSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSK-MRA 453 (487)
Q Consensus 376 HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~-a~~ 453 (487)
+|-..-+.|++++|+|+|.-.. ......+.. | -++.. -+.+++.++|..+++| +..+++ +++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-------~~~~el~~~i~~ll~~---~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-------NDPEELAEKIEYLLEN---PEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-------CCHHHHHHHHHHHHCC---HHHHHHHHHH
Confidence 5566789999999999998765 223333333 4 33333 2789999999999999 443333 333
Q ss_pred HHHHHHhhcCCCCChHHHHHHHH
Q 011396 454 LKDAAANALSPDGSSTKSLAQVA 476 (487)
Q Consensus 454 l~~~~~~~~~~~g~~~~~~~~~~ 476 (487)
-.+.++ ..-+..+-+++|+
T Consensus 73 a~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----HhCCHHHHHHHHH
Confidence 333444 3455555666654
No 142
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.89 E-value=6.9 Score=38.58 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=62.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEe-CCCCCCCCCCCchh
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIF-LPPVSFDDLPDDVR 90 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~ 90 (487)
+|+++-..+.|++.=...+.+.|.++. +.+|++++.+. ...+++..| .++.+- ++.. ...
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~----------~~~l~~~~P-~vd~vi~~~~~------~~~- 63 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW----------CRPLLSRMP-EVNEAIPMPLG------HGA- 63 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh----------hHHHHhcCC-ccCEEEecccc------cch-
Confidence 699999999999999999999997653 68999999875 333444333 233222 2210 000
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 91 METRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+ ....+++++ ++..++|++|.=....-...++...|+|.-+
T Consensus 64 --~~~--------~~~~~l~~~-lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 --LEI--------GERRRLGHS-LREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --hhh--------HHHHHHHHH-HHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 000 111122222 2344899988654455566777778888654
No 143
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=92.19 E-value=9 Score=37.83 Aligned_cols=98 Identities=7% Similarity=0.069 Sum_probs=59.8
Q ss_pred CcEEEEEecCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCe-e
Q 011396 279 ESVLFVCFGSG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGL-V 354 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v-~ 354 (487)
++.|.+.-|+. ..++.+.+.++++.|...+.++++.-+....+ ....+.+.......++ .
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e----------------~~~~~~i~~~~~~~~~~~ 246 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD----------------LACVNEIAQGCQTPPVTA 246 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH----------------HHHHHHHHHhcCCCcccc
Confidence 35777777774 55778889999999877777766554432110 0000111111111111 1
Q ss_pred eccc--CCc-cccccccccccccccccchhHHHHHhhCCceecc
Q 011396 355 VPSW--SPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 355 ~~~~--~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~ 395 (487)
..+- +.+ .+++++++ +||+.= .|-++=|.+.|+|+|.+
T Consensus 247 l~g~~sL~el~ali~~a~--l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 247 LAGKTTFPELGALIDHAQ--LFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred ccCCCCHHHHHHHHHhCC--EEEecC-CHHHHHHHHcCCCEEEE
Confidence 2222 334 77888899 999865 48899999999998765
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.03 E-value=1.6 Score=37.52 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=23.1
Q ss_pred CccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 21 GIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 21 ~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..|=-.-+..|+++|.++ ||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR-GHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHC-CCEEEEEEcCC
Confidence 346667799999999887 99999998775
No 145
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.00 E-value=0.78 Score=44.65 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=75.5
Q ss_pred CcEEEEEecCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeee
Q 011396 279 ESVLFVCFGSG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVV 355 (487)
Q Consensus 279 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~ 355 (487)
++.|.+..|+. ..++.+.+.++++.+...+.++++..++..+ ....+.+.......++.-
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-----------------~~~~~~i~~~~~~~~l~g 241 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-----------------KQRAERIAEALPGAVVLP 241 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHhhCCCCeecC
Confidence 44666666652 5577888999999987667776655454321 011122222111112211
Q ss_pred cccCCc-cccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccce---EEe-eecCCCCcCHHH
Q 011396 356 PSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVS---FRV-KVNENGLVGRED 430 (487)
Q Consensus 356 ~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G---~~l-~~~~~~~~~~~~ 430 (487)
..-++| .+++++|+ ++|+.= .|.++=|.+.|+|+|.+ +.. .+..+-.- +|-. +.- ..+. +++++
T Consensus 242 ~~sL~el~ali~~a~--l~I~~D-Sgp~HlAaa~g~P~i~l-fg~---t~p~~~~P-~~~~~~~~~~~~~~~---I~~~~ 310 (319)
T TIGR02193 242 KMSLAEVAALLAGAD--AVVGVD-TGLTHLAAALDKPTVTL-YGA---TDPGRTGG-YGKPNVALLGESGAN---PTPDE 310 (319)
T ss_pred CCCHHHHHHHHHcCC--EEEeCC-ChHHHHHHHcCCCEEEE-ECC---CCHhhccc-CCCCceEEccCccCC---CCHHH
Confidence 112344 77888899 999854 58899999999999865 111 11111111 1111 111 1233 89999
Q ss_pred HHHHHHHhc
Q 011396 431 IANYAKGLI 439 (487)
Q Consensus 431 l~~~i~~ll 439 (487)
+.+++.++|
T Consensus 311 V~~ai~~~~ 319 (319)
T TIGR02193 311 VLAALEELL 319 (319)
T ss_pred HHHHHHhhC
Confidence 999998875
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.91 E-value=21 Score=36.69 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=67.6
Q ss_pred ccCCc---cccccccccccccc---ccc-chhHHHHHhhCCc----eeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 357 SWSPQ---VQVLRHGSTGGFLS---HCG-WNSILESIVHGVP----IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 357 ~~~pq---~~~L~~~~~~~~I~---HGG-~gt~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
..+++ .++++.+| +++. +=| ..++.|++++|+| +|+--+.+-. +. ++-|+.++.
T Consensus 342 ~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~-------~~-l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA-------QE-LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh-------HH-hCCcEEECC-----
Confidence 44555 34566677 6664 345 4588899999999 6655544321 12 334666654
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
.+.++++++|.++|+.+. ++.+++++++.+.+.. -+...-+++++++|+
T Consensus 407 ~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 478999999999998532 4566666666666653 466677888877764
No 147
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.59 E-value=0.81 Score=40.98 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=24.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.-==+. +.--+..|+++|.+. ||+|+++.|..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~ 37 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDS 37 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESS
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCC
Confidence 5666553333 444578899999554 89999999987
No 148
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.93 E-value=1 Score=46.94 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=61.3
Q ss_pred CCeeecccCC--c-cccccccccccccccc---cchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 351 VGLVVPSWSP--Q-VQVLRHGSTGGFLSHC---GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~~~~~~p--q-~~~L~~~~~~~~I~HG---G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
..|.+.++.. + ..++..+. ++|.=+ |.++..||+.+|+|+| .+.....|.. -.=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li---~-- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII---D-- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe---C--
Confidence 3566777777 4 66777777 777655 7779999999999999 3334445555 4555555 1
Q ss_pred CcCHHHHHHHHHHhccCch-hHHHHHHHHHHHHH
Q 011396 425 LVGREDIANYAKGLIQGEE-GKLLRSKMRALKDA 457 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~~~-~~~~r~~a~~l~~~ 457 (487)
+..+|.++|..+|.+.. ...+...+-+.+.+
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78999999999999843 33444444444433
No 149
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=89.18 E-value=6.2 Score=34.43 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=24.8
Q ss_pred CCceEEEeCCCcchHHHHHHHh-CCCeEEEec
Q 011396 117 TRLVALVVDIFGSAAFDVANEF-GVPVYIFFT 147 (487)
Q Consensus 117 ~~pD~vI~D~~~~~~~~~A~~l-gIP~v~~~~ 147 (487)
..||+||...-+-.++-+-+.+ ++|.+.+.-
T Consensus 65 f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 65 FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 4799999999777777787778 899887644
No 150
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.99 E-value=6 Score=37.11 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=24.9
Q ss_pred HHhcCCCceEEEeCCCcch------HHHHHHHhCCCeEEE
Q 011396 112 VLAESTRLVALVVDIFGSA------AFDVANEFGVPVYIF 145 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~------~~~~A~~lgIP~v~~ 145 (487)
+++++.++|+||--.+.++ +..+|+++|||++.+
T Consensus 59 ~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 59 EFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3344558999887665555 346999999999985
No 151
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.24 E-value=31 Score=33.68 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=61.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceE-EeCCCCCCCCCCCchh
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSIST-IFLPPVSFDDLPDDVR 90 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~ 90 (487)
||+++-..+.|++.=..++.+.|.+.. +.+|++++.+. ...+++..| .++. +..+.. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~----------~~~l~~~~p-~id~v~~~~~~------~~~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAW----------CRPLLERMP-EIRQAIDMPLG------HGAL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechh----------hHHHHhcCc-hhceeeecCCc------ccch
Confidence 488999999999999999999997653 57999999775 233444333 2322 112110 0000
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 91 METRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
.+. ...+.+++ ++..++|++|.-........++...|+|.-+
T Consensus 64 ---~~~--------~~~~~~~~-lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 ---ELT--------ERRRLGRS-LREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---hhh--------HHHHHHHH-HhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 000 11111222 2344999999765555566777777888554
No 152
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.23 E-value=13 Score=38.03 Aligned_cols=89 Identities=10% Similarity=0.089 Sum_probs=60.3
Q ss_pred CCee-ecccCC-c-ccccccccccccccccc--chhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCC
Q 011396 351 VGLV-VPSWSP-Q-VQVLRHGSTGGFLSHCG--WNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~-~~~~~p-q-~~~L~~~~~~~~I~HGG--~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 425 (487)
.|++ ..++.+ + ..++..|++=+-|+||+ ..++.||+.+|+|++..=...... .+.. - |.....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~----~~i~-~--g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR----DFIA-S--ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc----cccc-C--CceecC-----
Confidence 5655 456777 3 88999999888888876 569999999999998765432211 1111 1 333333
Q ss_pred cCHHHHHHHHHHhccCchhHH-HHHHHHHH
Q 011396 426 VGREDIANYAKGLIQGEEGKL-LRSKMRAL 454 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~-~r~~a~~l 454 (487)
-+.+++.++|.++|++ ++ ++++..+-
T Consensus 396 ~~~~~m~~~i~~lL~d---~~~~~~~~~~q 422 (438)
T TIGR02919 396 NEVDQLISKLKDLLND---PNQFRELLEQQ 422 (438)
T ss_pred CCHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3689999999999998 54 44444333
No 153
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.35 E-value=4.9 Score=37.22 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 24 HLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 24 H~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|.--+.+|++.|. . +++|++++|+.
T Consensus 12 ~a~Gi~aL~~al~-~-~~dV~VVAP~~ 36 (252)
T COG0496 12 HAPGIRALARALR-E-GADVTVVAPDR 36 (252)
T ss_pred CCHHHHHHHHHHh-h-CCCEEEEccCC
Confidence 3344677888885 5 99999999987
No 154
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.71 E-value=3.4 Score=39.01 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=54.1
Q ss_pred cccCCccccccccccccccccccchhH-HHHHhhCCceeccccccccch--hhHhhhhhccceEEeeecCCCCcCHHHHH
Q 011396 356 PSWSPQVQVLRHGSTGGFLSHCGWNSI-LESIVHGVPIIAWPLYAEQKM--NAVLLIDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 356 ~~~~pq~~~L~~~~~~~~I~HGG~gt~-~eal~~GvP~l~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
..|-...++|.+++ +.|--. ||. -+++-.|||+|.+|-.+-|+. .|.+=.+.+|+.+.+-..+ +..-.
T Consensus 300 lsqqsfadiLH~ad--aalgmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-----aq~a~ 370 (412)
T COG4370 300 LSQQSFADILHAAD--AALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-----AQAAA 370 (412)
T ss_pred EeHHHHHHHHHHHH--HHHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-----hhhHH
Confidence 34444466666666 444333 343 446778999999999999987 5666666678887775432 23333
Q ss_pred HHHHHhccCchhHHHHHHHH
Q 011396 433 NYAKGLIQGEEGKLLRSKMR 452 (487)
Q Consensus 433 ~~i~~ll~~~~~~~~r~~a~ 452 (487)
.+.+++|.| +.+-.+++
T Consensus 371 ~~~q~ll~d---p~r~~air 387 (412)
T COG4370 371 QAVQELLGD---PQRLTAIR 387 (412)
T ss_pred HHHHHHhcC---hHHHHHHH
Confidence 344459999 66666555
No 155
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.09 E-value=13 Score=36.14 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.1
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVP-TPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~-~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.||+|++ =||-|-..-..++|-.|++. |.+|.+++++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCC
Confidence 3555555 56669999999999999887 98888888776
No 156
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=79.70 E-value=6.8 Score=34.76 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIP------------QVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P------------~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++|++..+|++=++.| -..||+++.++ |++||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 34677777766655544 47899999888 99999999875
No 157
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=78.80 E-value=3.2 Score=41.28 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=61.0
Q ss_pred CCeeec-ccCCccccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhh----hhhccceEEeeecCCCC
Q 011396 351 VGLVVP-SWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLL----IDDLKVSFRVKVNENGL 425 (487)
Q Consensus 351 ~~v~~~-~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v----~~~~G~G~~l~~~~~~~ 425 (487)
.++... +..+-..+|..+| ++||--. ..+.|.++.++|+|......|.+...+-+ +. ...|..+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aD--iLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~-~~pg~~~------- 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAAD--ILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEE-DLPGPIV------- 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTT-SSSS-EE-------
T ss_pred CcEEECCCCCCHHHHHHhcC--EEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHh-hCCCcee-------
Confidence 355543 4445688999999 9999985 58999999999999888777766443211 11 2223333
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
-+.++|.++|..++.+. ..++++-+++.+.+-+
T Consensus 321 ~~~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 321 YNFEELIEAIENIIENP--DEYKEKREKFRDKFFK 353 (369)
T ss_dssp SSHHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC
Confidence 47899999999988762 4456666777777654
No 158
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.69 E-value=60 Score=30.61 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=51.3
Q ss_pred CCeeecccCC---cccccccccccccccc---ccch-hHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 351 VGLVVPSWSP---QVQVLRHGSTGGFLSH---CGWN-SILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 351 ~~v~~~~~~p---q~~~L~~~~~~~~I~H---GG~g-t~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.++.+.++++ ...++..++ +++.- .|.| ++.|++++|+|+|..... .....+.+ .+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceE-ecCC--
Confidence 5677788888 244666676 55554 3544 469999999999665533 23333333 33466 3322
Q ss_pred CCcCHHHHHHHHHHhccC
Q 011396 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~ 441 (487)
...+++.+++..++++
T Consensus 327 --~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 --GDVEELADALEQLLED 342 (381)
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 2579999999999988
No 159
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.20 E-value=11 Score=35.35 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
...++|+..+|.|-..=..+||.+|.++ |+.|+|++.+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~e 143 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPD 143 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence 4579999999999999999999999966 99999998775
No 160
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.06 E-value=23 Score=28.62 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
+|++.+.++-.|.....-++..|.++ |++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCC
Confidence 48899999999999999999999776 9999887654
No 161
>PRK06849 hypothetical protein; Provisional
Probab=76.47 E-value=14 Score=37.03 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.+++|++... ...-.+.+|+.|.+. ||+|+.+....
T Consensus 3 ~~~~VLI~G~----~~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGA----RAPAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCC----CcHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3567887752 233689999999887 99999987654
No 162
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.86 E-value=51 Score=28.39 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=56.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhH
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRME 92 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (487)
-|.+.+..+.|-....+.+|-..+.+ |++|.|+--=+.. ...... .....++ ++.+........... .. .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~---~~~gE~-~~l~~l~-~v~~~~~g~~~~~~~-~~---~ 73 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGG---WKYGEL-KALERLP-NIEIHRMGRGFFWTT-EN---D 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCC---CccCHH-HHHHhCC-CcEEEECCCCCccCC-CC---h
Confidence 37788889999999999999999887 9999996532200 000111 2233343 566666553211111 11 1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcc
Q 011396 93 TRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGS 129 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~ 129 (487)
..-........... ++.+.+.++|+||.|-+..
T Consensus 74 ~~~~~~a~~~~~~a----~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDIAAAAEGWAFA----KEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHHH----HHHHhcCCCCEEEEechHh
Confidence 11111122222222 3333456899999998544
No 163
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=75.52 E-value=84 Score=30.72 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=59.2
Q ss_pred CcEEEEEec-CC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCC-e
Q 011396 279 ESVLFVCFG-SG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVG-L 353 (487)
Q Consensus 279 ~~~v~vs~G-s~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-v 353 (487)
++.|.++-| |. ..++.+.+.++++.+...+.+ |+..+++.+ ....+.+........ +
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~-Vvl~g~~~e-----------------~e~~~~i~~~~~~~~~l 236 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQ-VVLFGGPDE-----------------EERAEEIAKGLPNAVIL 236 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCE-EEEecChHH-----------------HHHHHHHHHhcCCcccc
Confidence 468888888 42 567889999999999998855 455554422 011111111111000 1
Q ss_pred eecccCCc-cccccccccccccccccchhHHHHHhhCCceecc
Q 011396 354 VVPSWSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 354 ~~~~~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~ 395 (487)
.-..-+.| .+++.+++ +||+. -.|-++=|.+.|+|.|.+
T Consensus 237 ~~k~sL~e~~~li~~a~--l~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 237 AGKTSLEELAALIAGAD--LVIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred CCCCCHHHHHHHHhcCC--EEEcc-CChHHHHHHHcCCCEEEE
Confidence 11222334 66777888 88875 458899999999998765
No 164
>PRK06321 replicative DNA helicase; Provisional
Probab=75.06 E-value=20 Score=37.06 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++...|+.|-..-.+.||...+.+.|+.|.|++-+-
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 5778889999999999999998644489999998775
No 165
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.80 E-value=27 Score=32.61 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.0
Q ss_pred HHHhcCCCceEEEeCCCcch------HHHHHHHhCCCeEEEe
Q 011396 111 KVLAESTRLVALVVDIFGSA------AFDVANEFGVPVYIFF 146 (487)
Q Consensus 111 ~~~~~~~~pD~vI~D~~~~~------~~~~A~~lgIP~v~~~ 146 (487)
.++++++++++||=-.+-++ +..+|+++|||++.+-
T Consensus 58 ~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 58 AAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 33444569999885554444 3469999999999863
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=74.43 E-value=16 Score=34.58 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=34.2
Q ss_pred eeecccCCccccccccccccccccccchhHHHHHhhCCceecccc
Q 011396 353 LVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPL 397 (487)
Q Consensus 353 v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~ 397 (487)
+.+.+-.+-.++|.+++ .+||-.+ ++-.||+.+|+|+++++-
T Consensus 185 ~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 33455667789999999 8888776 578999999999999873
No 167
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=74.18 E-value=4.4 Score=39.45 Aligned_cols=130 Identities=18% Similarity=0.061 Sum_probs=73.3
Q ss_pred EE-EEEecCC--CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecc
Q 011396 281 VL-FVCFGSG--GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPS 357 (487)
Q Consensus 281 ~v-~vs~Gs~--~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~ 357 (487)
.| ++..||. ..++.+.+.++++.+...+.++++..++..+ ....+.+.+.. .++.+.+
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-----------------~~~~~~i~~~~--~~~~l~g 240 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-----------------EQRAKRLAEGF--PYVEVLP 240 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-----------------HHHHHHHHccC--CcceecC
Confidence 44 4444443 4578888999999987767776654454322 01111111111 1222222
Q ss_pred --cCCc-cccccccccccccccccchhHHHHHhhCCceecc--ccccccc----hhhHhhhhhccceEEeeecCCCCcCH
Q 011396 358 --WSPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW--PLYAEQK----MNAVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 358 --~~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~--P~~~DQ~----~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
.+.+ .+++++++ ++|+.-. |.++=|.+.|+|+|++ |...... .|...+.. ++.. -.. +++
T Consensus 241 ~~sL~elaali~~a~--l~I~nDS-Gp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~~c--m~~---I~~ 309 (322)
T PRK10964 241 KLSLEQVARVLAGAK--AVVSVDT-GLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PGKS--MAD---LSA 309 (322)
T ss_pred CCCHHHHHHHHHhCC--EEEecCC-cHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CCcc--ccc---CCH
Confidence 2334 77888899 9998654 8999999999998776 3221110 11111111 1111 122 799
Q ss_pred HHHHHHHHHhcc
Q 011396 429 EDIANYAKGLIQ 440 (487)
Q Consensus 429 ~~l~~~i~~ll~ 440 (487)
+++.++++++|+
T Consensus 310 e~V~~~~~~~l~ 321 (322)
T PRK10964 310 ETVFQKLETLIS 321 (322)
T ss_pred HHHHHHHHHHhh
Confidence 999999988874
No 168
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.80 E-value=7.4 Score=32.61 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++++|++.+.++-+|-.-..-++..|.++ |++|+++....
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~v 41 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMT 41 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 46789999999999999999999999776 99999998764
No 169
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=73.71 E-value=52 Score=30.84 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|||++.-==+. |.--+.+|+++|.+. | +|+++.|..
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~ 41 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAE 41 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCC
Confidence 457887652222 223477899999665 7 799988876
No 170
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=73.05 E-value=9.3 Score=39.37 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=59.4
Q ss_pred cccCCc---cccccccccccccc---cccc-hhHHHHHhhCCc----eeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 356 PSWSPQ---VQVLRHGSTGGFLS---HCGW-NSILESIVHGVP----IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 356 ~~~~pq---~~~L~~~~~~~~I~---HGG~-gt~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.+++++ .++++.+| ++|. +-|. .++.||+++|+| +|+--+.+ -. +. ..-|+.++.
T Consensus 346 ~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~~------~~-~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-AA------EE-LSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEecccc-ch------hh-cCCCEEECC----
Confidence 356665 44577788 5552 3454 477999999999 44432222 11 11 123555554
Q ss_pred CcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 011396 425 LVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKW 479 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 479 (487)
-+.++++++|.++++++. +..+.+.++..+.+. .-+...-+++++++|
T Consensus 412 -~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred -CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 478999999999998632 223333333333333 235556666666654
No 171
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.63 E-value=25 Score=28.31 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=32.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
++++...+..-|-.-+..|+..|.++ ||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCC
Confidence 68899999999999999999999776 9999988543
No 172
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=72.26 E-value=33 Score=33.50 Aligned_cols=82 Identities=12% Similarity=0.097 Sum_probs=61.7
Q ss_pred CCeee-cccCC---cccccccccccccccc--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 351 VGLVV-PSWSP---QVQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~~-~~~~p---q~~~L~~~~~~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.++.+ .+++| +.++|+.|+++.|.|. =|.|++.-.|..|+|+++- .+..--.-+.+ .|+-+....++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEecccc--
Confidence 45643 56777 4789999998777774 6899999999999999763 34444455666 68777766666
Q ss_pred CcCHHHHHHHHHHhcc
Q 011396 425 LVGREDIANYAKGLIQ 440 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~ 440 (487)
++...|+++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 999999998887765
No 173
>PRK08760 replicative DNA helicase; Provisional
Probab=72.24 E-value=16 Score=37.69 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-++.+|...+.+.|+.|.|++-+-
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 6778889999999999999988644489999998775
No 174
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=72.20 E-value=50 Score=30.87 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCC
Q 011396 28 QVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 28 ~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.+|+++| ++ +|+|+++.|..
T Consensus 16 l~aL~~~l-~~-~~~V~VvAP~~ 36 (253)
T PRK13933 16 INTLAELL-SK-YHEVIIVAPEN 36 (253)
T ss_pred HHHHHHHH-Hh-CCcEEEEccCC
Confidence 78899999 44 78999999876
No 175
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.23 E-value=76 Score=28.27 Aligned_cols=105 Identities=11% Similarity=-0.009 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchh
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVR 90 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (487)
.-.|.+++..+.|-....+.+|-..+.+ |++|.++--=... . ....... ...+ .++.+......-.... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~--~-~~GE~~~-l~~l-~~v~~~~~g~~~~~~~-~--- 91 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGA--W-STGERNL-LEFG-GGVEFHVMGTGFTWET-Q--- 91 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCC--C-ccCHHHH-HhcC-CCcEEEECCCCCcccC-C---
Confidence 4579999999999999999999999887 9999998743310 0 0011222 2222 2566666553211110 1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcc
Q 011396 91 METRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGS 129 (487)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~ 129 (487)
....-.......+...+ +.+.+..+|+||.|-+..
T Consensus 92 ~~~e~~~~~~~~~~~a~----~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 92 DRERDIAAAREGWEEAK----RMLADESYDLVVLDELTY 126 (191)
T ss_pred CcHHHHHHHHHHHHHHH----HHHhCCCCCEEEEehhhH
Confidence 11111122222223333 333466899999998544
No 176
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=69.88 E-value=5.4 Score=34.73 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=23.1
Q ss_pred HHHHHhcCCCceEEEeCCCcchHH-H----HHHHh-CCCeEEEec
Q 011396 109 ALKVLAESTRLVALVVDIFGSAAF-D----VANEF-GVPVYIFFT 147 (487)
Q Consensus 109 ~l~~~~~~~~pD~vI~D~~~~~~~-~----~A~~l-gIP~v~~~~ 147 (487)
.+.+++++.+||+||+...+.... . ....+ ++|.+.+.+
T Consensus 80 ~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 80 RLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 344455566999999987554433 2 12224 577766544
No 177
>PRK09620 hypothetical protein; Provisional
Probab=69.61 E-value=29 Score=31.92 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIP------------QVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P------------~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++|++..+|+.=.+.| -..||++|.++ |++|+++....
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 34677776665444433 36889999888 99999997653
No 178
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=69.36 E-value=34 Score=31.47 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...++.|=..=.+.++..++.+.|+.|.|++.+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 5677778889999999999888765599999999876
No 179
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=68.94 E-value=70 Score=29.92 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=23.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.-==+. |.--+.+|+++| ++ +|+|+++.|..
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l-~~-~~~V~VvAP~~ 36 (253)
T PRK13935 2 NILVTNDDGI-TSPGIIILAEYL-SE-KHEVFVVAPDK 36 (253)
T ss_pred eEEEECCCCC-CCHHHHHHHHHH-Hh-CCcEEEEccCC
Confidence 4555542222 233477889999 45 78999999876
No 180
>PRK05595 replicative DNA helicase; Provisional
Probab=68.20 E-value=23 Score=36.36 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-++.+|..++.+.|+.|.|++.+-
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5677888999999999999987533499999998875
No 181
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.44 E-value=30 Score=30.70 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=45.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhH
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQ-HNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRME 92 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r-~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (487)
|-|- ..+-|-++-...|+++|.++ .|++|.+-++.. .........++..+....+|. +.
T Consensus 24 iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--------tg~~~~~~~~~~~v~~~~~P~----D~------- 83 (186)
T PF04413_consen 24 IWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--------TGREMARKLLPDRVDVQYLPL----DF------- 83 (186)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--------CHHHHHHGG-GGG-SEEE-------SS-------
T ss_pred EEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--------chHHHHHHhCCCCeEEEEeCc----cC-------
Confidence 4444 35679999999999999764 268887777543 022333333344444444442 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch--HHHHHHHhCCCeEEEec
Q 011396 93 TRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSA--AFDVANEFGVPVYIFFT 147 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~--~~~~A~~lgIP~v~~~~ 147 (487)
...++..++.+ +||++|.--.-.| -...|++.|||++.++.
T Consensus 84 ----------~~~~~rfl~~~----~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ----------PWAVRRFLDHW----RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----------HHHHHHHHHHH------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ----------HHHHHHHHHHh----CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12234445555 9997774433444 33578889999887644
No 182
>PRK05973 replicative DNA helicase; Provisional
Probab=67.41 E-value=11 Score=34.88 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...||.|-..=.+.++...+++ |+.|.|++.+.
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEe 102 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEY 102 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeC
Confidence 36778888999999999999988777 99999999876
No 183
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=67.31 E-value=12 Score=36.37 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=30.6
Q ss_pred HhHHHHHHHHHHHhcCCCceEEEeCCCcchH----------HHHHHHhCCCeEE
Q 011396 101 RSLSSLRDALKVLAESTRLVALVVDIFGSAA----------FDVANEFGVPVYI 144 (487)
Q Consensus 101 ~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~----------~~~A~~lgIP~v~ 144 (487)
...++..+.+.+++++.+||++|+.+-+-++ ..+.++++||.++
T Consensus 63 en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 3445555566666677799999999865441 1356789999876
No 184
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.61 E-value=2.1e+02 Score=31.53 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=65.9
Q ss_pred ecccCCcc---cccccccccccccc---cc-chhHHHHHhhCCc---eeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 355 VPSWSPQV---QVLRHGSTGGFLSH---CG-WNSILESIVHGVP---IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 355 ~~~~~pq~---~~L~~~~~~~~I~H---GG-~gt~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
+.+++++. ++++.+| +|+.- -| ..++.|++++|+| .+++.-..- -..+ +.-|+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G------~~~~-l~~~llv~P---- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAG------AAAE-LAEALLVNP---- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccc------hhHH-hCcCeEECC----
Confidence 44667764 4666677 55542 24 4588999999875 233322111 1112 333666665
Q ss_pred CcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 425 LVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 425 ~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
.+.++++++|.++|+.+. ++.+++.+++.+.+++ -+...-++++++.+++.
T Consensus 413 -~d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred -CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 478999999999998532 3445555555555542 46667788888877765
No 185
>PRK05748 replicative DNA helicase; Provisional
Probab=66.41 E-value=56 Score=33.52 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=32.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
=+++...|+.|-..-.+.+|...+.+.|+.|.|++.+-
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 242 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEM 242 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 36778889999999999999988644499999998775
No 186
>PHA02542 41 41 helicase; Provisional
Probab=66.28 E-value=12 Score=38.61 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-.+.+|...++. |+.|.|++-+-
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM 228 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEM 228 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccC
Confidence 6778889999999999999998776 99999998665
No 187
>PRK05636 replicative DNA helicase; Provisional
Probab=65.69 E-value=17 Score=37.76 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++...|+.|-..-.+.+|...+.++|..|.|++.+-
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 5778889999999999999987644488999998764
No 188
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=65.45 E-value=1.2e+02 Score=28.45 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcC-CCeee----cccCCcccccccccccc
Q 011396 298 NELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKG-VGLVV----PSWSPQVQVLRHGSTGG 372 (487)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~v~~----~~~~pq~~~L~~~~~~~ 372 (487)
..+.+.+++.+..|+.++.-... ..+-.-+...... .+++. .++=|+.+.|+.++ .
T Consensus 187 ~~l~k~l~~~g~~~lisfSRRTp-----------------~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ad--y 247 (329)
T COG3660 187 SLLVKILENQGGSFLISFSRRTP-----------------DTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAAD--Y 247 (329)
T ss_pred HHHHHHHHhCCceEEEEeecCCc-----------------HHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcc--e
Confidence 34666677788888877766532 0011111211211 12222 25668889998888 6
Q ss_pred ccc-cccchhHHHHHhhCCceec
Q 011396 373 FLS-HCGWNSILESIVHGVPIIA 394 (487)
Q Consensus 373 ~I~-HGG~gt~~eal~~GvP~l~ 394 (487)
+|. --..+-..||...|+|+.+
T Consensus 248 ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 248 IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred EEEecchhhhhHHHhccCCCeEE
Confidence 555 4456778899999999754
No 189
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=65.10 E-value=35 Score=34.79 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
=+++...|+.|-..-++.+|..++.+.|+.|.|++.+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm 234 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM 234 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC
Confidence 36777788999999999999998654489999999875
No 190
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=65.04 E-value=55 Score=31.51 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCee-ecccCC---cccccccccccccccc--ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCC
Q 011396 351 VGLV-VPSWSP---QVQVLRHGSTGGFLSH--CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENG 424 (487)
Q Consensus 351 ~~v~-~~~~~p---q~~~L~~~~~~~~I~H--GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 424 (487)
.++. +.+++| +.++|+.||++.|+|+ =|.||+.-.+++|+|+++-- +=+.|.. +.+ .|+-+-.+.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCCc--
Confidence 3444 356666 5789999998888886 58999999999999998653 2233333 334 47777656665
Q ss_pred CcCHHHHHHHHHHh
Q 011396 425 LVGREDIANYAKGL 438 (487)
Q Consensus 425 ~~~~~~l~~~i~~l 438 (487)
++...++++=+++
T Consensus 279 -L~~~~v~e~~rql 291 (322)
T PRK02797 279 -LDEDIVREAQRQL 291 (322)
T ss_pred -ccHHHHHHHHHHH
Confidence 7777776654433
No 191
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.66 E-value=34 Score=31.71 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.3
Q ss_pred HHHhcCCCceEEEeCCCcch------HHHHHHHhCCCeEEE
Q 011396 111 KVLAESTRLVALVVDIFGSA------AFDVANEFGVPVYIF 145 (487)
Q Consensus 111 ~~~~~~~~pD~vI~D~~~~~------~~~~A~~lgIP~v~~ 145 (487)
.+++++.+.|+||=-++-++ +..+|++.|||++.|
T Consensus 59 ~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 59 AAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 34444559999996665555 346999999999985
No 192
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.01 E-value=20 Score=36.01 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++..|+++..=+.|-+.-.-.||+.|.++ |++|.+++.+-
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~ 138 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADT 138 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEeccc
Confidence 34568888888999999999999999886 99999999887
No 193
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=63.90 E-value=63 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++|++...|+.|-..-.+.|++.|.++ |++|-=+.+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~E 43 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPE 43 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeee
Confidence 5789999999999999999999999877 99987666554
No 194
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.89 E-value=48 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++..-|+.|...-..++|..++++ |++|.++..+.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCC
Confidence 5666778889999999999999887 99999998775
No 195
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.81 E-value=61 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHhcCCCceEEEeCCCcch------HHHHHHHhCCCeEEEe
Q 011396 111 KVLAESTRLVALVVDIFGSA------AFDVANEFGVPVYIFF 146 (487)
Q Consensus 111 ~~~~~~~~pD~vI~D~~~~~------~~~~A~~lgIP~v~~~ 146 (487)
.+++++.++++||=-.+-++ +..+|+++|||++.+-
T Consensus 59 ~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 59 AEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 34445569999995554444 4469999999999863
No 196
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=63.25 E-value=23 Score=36.03 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
++++|+++..+++-| +||+.|.+. ++...+++.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~p 36 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFP 36 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEEC
Confidence 346899999999887 689999776 8544444444
No 197
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.06 E-value=11 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+||++...|+.+-.. ...+.+.|.++ |++|+++.++.
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~ 37 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPS 37 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCc
Confidence 478888777766666 99999999887 99999999886
No 198
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=62.69 E-value=21 Score=28.02 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=21.1
Q ss_pred HHhcCCCceEEEeCC---CcchHHHHHHHhCCCeE
Q 011396 112 VLAESTRLVALVVDI---FGSAAFDVANEFGVPVY 143 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~---~~~~~~~~A~~lgIP~v 143 (487)
++.++.++|++|..+ +.....+..++.|||++
T Consensus 56 ~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 56 DFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 334455999999886 33344578888899954
No 199
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=62.46 E-value=77 Score=27.89 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=20.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhc
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQ 38 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r 38 (487)
+++++ .|+.||+.=|++|-+.|.++
T Consensus 40 ~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 45444 58999999999999999655
No 200
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=62.27 E-value=65 Score=27.79 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.0
Q ss_pred ccccccccch------hHHHHHhhCCceeccc
Q 011396 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
.++++|.|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3888888865 6789999999999997
No 201
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=62.17 E-value=24 Score=37.12 Aligned_cols=77 Identities=16% Similarity=-0.019 Sum_probs=46.7
Q ss_pred ccccccccccccccc---ccc-chhHHHHHhhCCceecccccc-ccchhhHhhh-hhccceEEeeecCCC--CcCHHHHH
Q 011396 361 QVQVLRHGSTGGFLS---HCG-WNSILESIVHGVPIIAWPLYA-EQKMNAVLLI-DDLKVSFRVKVNENG--LVGREDIA 432 (487)
Q Consensus 361 q~~~L~~~~~~~~I~---HGG-~gt~~eal~~GvP~l~~P~~~-DQ~~na~~v~-~~~G~G~~l~~~~~~--~~~~~~l~ 432 (487)
..+++..|+ ++|. +=| .-+..||+++|+|+|+....+ ..... .+. .....|+.+...... .-+.++|+
T Consensus 468 y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~--E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 468 YEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME--EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred hHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH--HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 355677788 5554 345 459999999999999987643 22221 222 201257776532210 12567888
Q ss_pred HHHHHhccC
Q 011396 433 NYAKGLIQG 441 (487)
Q Consensus 433 ~~i~~ll~~ 441 (487)
+++.++++.
T Consensus 544 ~~m~~~~~~ 552 (590)
T cd03793 544 QYMYEFCQL 552 (590)
T ss_pred HHHHHHhCC
Confidence 888888854
No 202
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=61.28 E-value=1.1e+02 Score=26.41 Aligned_cols=115 Identities=22% Similarity=0.140 Sum_probs=58.1
Q ss_pred EcCCCccCHHHH-HHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCC----CCCCchhh
Q 011396 17 VPTPGIGHLIPQ-VELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFD----DLPDDVRM 91 (487)
Q Consensus 17 ~~~~~~GH~~P~-l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 91 (487)
+.+...+.+..+ -.+|..|.++ |++|.=++... ...... -.+......++..... ++..+...
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~-G~rv~G~vQ~~----~~~~~~-------~~~~m~l~dl~~G~~~~IsQ~LG~gs~g 71 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRAR-GVRVAGLVQRN----TADGDG-------GRCDMDLRDLPSGRRIRISQDLGPGSRG 71 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccc----cCCCCC-------CccceEEEECCCCCEEEEeeccCCCCcc
Confidence 444555667664 4699999888 99998777543 000000 0123334444332211 11111110
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch---------HHHHHHHhCCCeEEEecc
Q 011396 92 ETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSA---------AFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~---------~~~~A~~lgIP~v~~~~~ 148 (487)
-.-=...+......++..|.+ ++|++|..-|.-- ....|-..|||+++..+.
T Consensus 72 CrLD~~~La~A~~~l~~al~~-----~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 72 CRLDPGALAEASAALRRALAE-----GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred cccCHHHHHHHHHHHHHHHhc-----CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 000012333344444455543 8999998865421 123455579998886665
No 203
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=61.10 E-value=15 Score=34.48 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=24.1
Q ss_pred CceEEEeCCCcc------hHHHHHHHhCCCeEEEecc
Q 011396 118 RLVALVVDIFGS------AAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 118 ~pD~vI~D~~~~------~~~~~A~~lgIP~v~~~~~ 148 (487)
.||+|++...+. -++.+|+.||+|++++...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 799999765443 3668999999999986553
No 204
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=60.92 E-value=14 Score=30.02 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=24.6
Q ss_pred EEEEEcCCCcc---CHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIG---HLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~G---H~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|+|+.-|-.+ .-.-.++|+.+-++| ||+|.++.+..
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCc
Confidence 57777665543 334578889998888 99999998765
No 205
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=60.84 E-value=12 Score=34.58 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=52.6
Q ss_pred CCcEEEEEecCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCee
Q 011396 278 SESVLFVCFGSG---GTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLV 354 (487)
Q Consensus 278 ~~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~ 354 (487)
+++.|.+..|+. ..++.+...++++.|...+.+++ .++++.+.. ...-+.+........+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vv-l~g~~~~~~---------------~~~~~~~~~~~~~~~~~ 167 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVV-LLGGPEEQE---------------KEIADQIAAGLQNPVIN 167 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEE-E--SSHHHH---------------HHHHHHHHTTHTTTTEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEE-EEccchHHH---------------HHHHHHHHHhcccceEe
Confidence 445788878874 55677889999999988775654 444332200 00001111111111222
Q ss_pred eccc--CCc-cccccccccccccccccchhHHHHHhhCCceecc
Q 011396 355 VPSW--SPQ-VQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAW 395 (487)
Q Consensus 355 ~~~~--~pq-~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~ 395 (487)
+.+- +.+ .+++.+++ ++|+.-. |.++=|.+.|+|+|++
T Consensus 168 ~~~~~~l~e~~ali~~a~--~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 168 LAGKTSLRELAALISRAD--LVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp ETTTS-HHHHHHHHHTSS--EEEEESS-HHHHHHHHTT--EEEE
T ss_pred ecCCCCHHHHHHHHhcCC--EEEecCC-hHHHHHHHHhCCEEEE
Confidence 3222 223 67888888 8888654 8899999999999888
No 206
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=60.75 E-value=51 Score=32.05 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCceEEE-eCCCc-chHHHHHHHhCCCeEEEecc
Q 011396 117 TRLVALV-VDIFG-SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 117 ~~pD~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+.. ..+..=|.++|||+|.+.-+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 3799766 56533 34667888999999887544
No 207
>PRK07773 replicative DNA helicase; Validated
Probab=60.02 E-value=43 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++...|+.|-..-.+.+|...+.+.|..|.|++-+-
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 6778889999999999999998755478999998775
No 208
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=59.91 E-value=76 Score=32.21 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-.+.+|..++.+.|+.|.|++.+-
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 6777889999999999999888633499999999775
No 209
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.64 E-value=1.3e+02 Score=26.95 Aligned_cols=102 Identities=7% Similarity=-0.058 Sum_probs=60.7
Q ss_pred CeeecccCCccccccccccccccccccchhHHHHHh----hCCceeccccccccchh-----hHhhhhhccceEEeeecC
Q 011396 352 GLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIV----HGVPIIAWPLYAEQKMN-----AVLLIDDLKVSFRVKVNE 422 (487)
Q Consensus 352 ~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~----~GvP~l~~P~~~DQ~~n-----a~~v~~~~G~G~~l~~~~ 422 (487)
.+.+.....+...+..++ ++|.--+.-.+.+.++ .|+++-+ .|.+.. -..+.+ -++-+.+.+..
T Consensus 55 ~i~~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~-g~l~iaIsT~G 127 (202)
T PRK06718 55 KIRWKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR-GKLTISVSTDG 127 (202)
T ss_pred CEEEEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc-CCeEEEEECCC
Confidence 344434444455677777 8888888777777665 3444433 344332 223444 45556666554
Q ss_pred CCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhh
Q 011396 423 NGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANA 461 (487)
Q Consensus 423 ~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~ 461 (487)
.+..-...|++.|++++. ++-..+-+.+.++.+.+++.
T Consensus 128 ~sP~la~~lr~~ie~~~~-~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 128 ASPKLAKKIRDELEALYD-ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred CChHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHh
Confidence 333455778888888773 23356777777788877763
No 210
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.61 E-value=26 Score=33.45 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+|.+...|+-|--.=.=.|++.|.++ ||+|-++.-+.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDP 89 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDP 89 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECC
Confidence 3467888899999999999999999887 99999998544
No 211
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=59.45 E-value=68 Score=32.93 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=30.1
Q ss_pred CcEEEEEcCC-CccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTP-GIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~-~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
|++|++.... +.|-..=...|++.|+++ |++|..+-+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecC
Confidence 4567777544 469999999999999887 9999988653
No 212
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=58.99 E-value=20 Score=35.81 Aligned_cols=49 Identities=10% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchH------H----HHHHHhCCCeEEE
Q 011396 97 LTLARSLSSLRDALKVLAESTRLVALVVDIFGSAA------F----DVANEFGVPVYIF 145 (487)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~------~----~~A~~lgIP~v~~ 145 (487)
.++....++..+.+.+++++.+||++|+.+-+.++ . .+.+++|||.++-
T Consensus 55 nYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 55 SFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred hhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34555667777777788888899999998755441 1 2566799998774
No 213
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=58.63 E-value=21 Score=35.72 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=32.6
Q ss_pred cccccccchhHHHHHhhCCceeccccc--cccchhhHhhhhhccceEEe
Q 011396 372 GFLSHCGWNSILESIVHGVPIIAWPLY--AEQKMNAVLLIDDLKVSFRV 418 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l 418 (487)
...|+||+--+.|-=.+|+|.|.+-.. .-.-.-|.|+.. ++++--
T Consensus 347 gtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~ 393 (431)
T TIGR01918 347 GTCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPH 393 (431)
T ss_pred CcchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCC
Confidence 678888888888888999999877643 234444678877 666553
No 214
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=58.63 E-value=16 Score=32.66 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.+||++.-.|+.|=..-...+++.|.++ ||+|+++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 34578777766554443379999999887 99999999886
No 215
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=57.99 E-value=34 Score=37.94 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=65.1
Q ss_pred cccccccccccccc---cccch-hHHHHHhhCCc---eeccc-cccccchhhHhhhhhcc-ceEEeeecCCCCcCHHHHH
Q 011396 362 VQVLRHGSTGGFLS---HCGWN-SILESIVHGVP---IIAWP-LYAEQKMNAVLLIDDLK-VSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 362 ~~~L~~~~~~~~I~---HGG~g-t~~eal~~GvP---~l~~P-~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~ 432 (487)
.++++.++ +||. .-|.| +..|++++|+| +++++ +.+ .+. . +| -|+.+++ .+.++++
T Consensus 370 ~aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~-l~~~allVnP-----~D~~~lA 434 (797)
T PLN03063 370 CALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---S-LGAGALLVNP-----WNITEVS 434 (797)
T ss_pred HHHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---h-hcCCeEEECC-----CCHHHHH
Confidence 46677777 6663 44766 77799999999 45555 332 111 1 33 4677765 5789999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhh
Q 011396 433 NYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 433 ~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 483 (487)
++|.++|+.+. +.-+++.+++.+.++. -+...-.+.|++.+++..
T Consensus 435 ~AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 435 SAIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 99999998321 3455556666666653 345566777777776653
No 216
>PRK06749 replicative DNA helicase; Provisional
Probab=57.35 E-value=78 Score=32.25 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++...|+.|-..-++.||...+++ |+.|.|++.+-
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEM 224 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEM 224 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeC
Confidence 6778889999999999999999876 99999998774
No 217
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=57.04 E-value=1.6e+02 Score=27.56 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...|+.|-..=.++++...+++ |..|.|++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 46777788999999999999988777 99999999875
No 218
>PRK08006 replicative DNA helicase; Provisional
Probab=56.79 E-value=84 Score=32.49 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++...|+.|-..-.+.||...+.+.|+.|.|++-+-
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM 263 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 6778889999999999999998644489999998774
No 219
>PRK12342 hypothetical protein; Provisional
Probab=56.64 E-value=19 Score=33.66 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=24.1
Q ss_pred CceEEEeCCCcch------HHHHHHHhCCCeEEEecc
Q 011396 118 RLVALVVDIFGSA------AFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 118 ~pD~vI~D~~~~~------~~~~A~~lgIP~v~~~~~ 148 (487)
.||+|++...+.- ++.+|+.||+|++++...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 7999997754432 678999999999986543
No 220
>PRK08506 replicative DNA helicase; Provisional
Probab=56.31 E-value=66 Score=33.27 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
=+++...|+.|-..-.+.+|...++. |+.|.|++.+-
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEM 230 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEM 230 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcC
Confidence 36778889999999999999998776 99999998775
No 221
>PLN02929 NADH kinase
Probab=56.31 E-value=15 Score=35.17 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=43.1
Q ss_pred ccccccccccccchhHHHHHhh---CCceecccccc------ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHH
Q 011396 367 HGSTGGFLSHCGWNSILESIVH---GVPIIAWPLYA------EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~---GvP~l~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 437 (487)
.++ ++|+-||-||+..+.+. ++|+|.+-... .++.|... +. .-+|.--. ++.+++.+++++
T Consensus 64 ~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~~ 133 (301)
T PLN02929 64 DVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLDD 133 (301)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHHH
Confidence 445 99999999999999664 67877765431 12333321 11 13444432 678999999999
Q ss_pred hccC
Q 011396 438 LIQG 441 (487)
Q Consensus 438 ll~~ 441 (487)
++++
T Consensus 134 il~g 137 (301)
T PLN02929 134 VLFG 137 (301)
T ss_pred HHcC
Confidence 9976
No 222
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=55.94 E-value=58 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=33.8
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQ------------VELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~------------l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+||++..+|++=.+.|. .+||+++..+ |++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 3568999999988888774 6899999888 99999999764
No 223
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=55.94 E-value=12 Score=32.72 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=41.1
Q ss_pred ccccccccccccchhHHHHHhhCCceecccccc-----------------------ccchhhHhhhhhccceEEeeecCC
Q 011396 367 HGSTGGFLSHCGWNSILESIVHGVPIIAWPLYA-----------------------EQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~-----------------------DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
+..++++|++||...+..... ++|+|-++..+ ....+...+.+-+|+-+..-.-
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~-- 108 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPY-- 108 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEE--
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEE--
Confidence 344559999999998888877 99999999843 2333345554434554444333
Q ss_pred CCcCHHHHHHHHHHhccC
Q 011396 424 GLVGREDIANYAKGLIQG 441 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~ 441 (487)
-+.+++...|.++..+
T Consensus 109 --~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 109 --DSEEEIEAAIKQAKAE 124 (176)
T ss_dssp --SSHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHHc
Confidence 3677777777776543
No 224
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=55.68 E-value=24 Score=27.25 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHhcCCCceEEEeCCCcch---------HHHHHHHhCCCeE
Q 011396 110 LKVLAESTRLVALVVDIFGSA---------AFDVANEFGVPVY 143 (487)
Q Consensus 110 l~~~~~~~~pD~vI~D~~~~~---------~~~~A~~lgIP~v 143 (487)
+.++++..++|+||..+.... -..+|...+||++
T Consensus 52 i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 345556779999997653221 1358888999976
No 225
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=55.60 E-value=1.4e+02 Score=26.07 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=29.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
-|.+++..+.|-..-.+.+|-..+.+ |++|.++-
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQ 40 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQ 40 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47888889999999999999999887 99997764
No 226
>PRK07004 replicative DNA helicase; Provisional
Probab=53.82 E-value=77 Score=32.64 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-++.+|..++.+.|+.|.|++-+-
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM 252 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEM 252 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6778889999999999999988644499999998775
No 227
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=53.60 E-value=37 Score=30.84 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHH
Q 011396 11 RAHVAMVPTPGIG--HLIPQVELAKRLV 36 (487)
Q Consensus 11 ~~~Il~~~~~~~G--H~~P~l~LA~~L~ 36 (487)
|++|++..|.-+| ..||.-.+++.|.
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~ 28 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALN 28 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcc
Confidence 3578887776665 4899999999994
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.56 E-value=82 Score=31.72 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+..|+|+..+|.|-..-+..||..|..+ |++|.++..+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 3568888889999999999999999877 99999998876
No 229
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=53.44 E-value=1.1e+02 Score=26.03 Aligned_cols=139 Identities=20% Similarity=0.219 Sum_probs=67.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCC
Q 011396 281 VLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSP 360 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~p 360 (487)
.|-|-+|| ..+....+++...|+..+..+-.-+.+.++ .|+.+. .++.
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~saHR-------------------~p~~l~-----------~~~~ 49 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASAHR-------------------TPERLL-----------EFVK 49 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--TTT-------------------SHHHHH-----------HHHH
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEeccC-------------------CHHHHH-----------HHHH
Confidence 45566677 335567888888898888766555544433 234332 1111
Q ss_pred ccccccccccccccccccch----hHHHHHhhCCceeccccccccchh----hHhhhhhccceEEeeecCCCCcCHHHHH
Q 011396 361 QVQVLRHGSTGGFLSHCGWN----SILESIVHGVPIIAWPLYAEQKMN----AVLLIDDLKVSFRVKVNENGLVGREDIA 432 (487)
Q Consensus 361 q~~~L~~~~~~~~I~HGG~g----t~~eal~~GvP~l~~P~~~DQ~~n----a~~v~~~~G~G~~l~~~~~~~~~~~~l~ 432 (487)
...- .+++ +||.=.|.. ++..++- -+|+|.+|....+... ...+.---|+++..-.- |+..+...++
T Consensus 50 ~~~~-~~~~--viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A 124 (150)
T PF00731_consen 50 EYEA-RGAD--VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLA 124 (150)
T ss_dssp HTTT-TTES--EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHH
T ss_pred Hhcc-CCCE--EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHH
Confidence 1100 1233 666655543 3333333 6899999988764421 11121113555443210 0113445555
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 433 NYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 433 ~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
-.|-.+ .| ++++++.+.+++..++
T Consensus 125 ~~ILa~-~d---~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 125 ARILAL-KD---PELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHT-T----HHHHHHHHHHHHHHHH
T ss_pred HHHHhc-CC---HHHHHHHHHHHHHHHc
Confidence 544433 35 7888888888877764
No 230
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=53.39 E-value=1.1e+02 Score=28.80 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcC--CCEEEEEeCCC
Q 011396 28 QVELAKRLVHQH--NFLVTIFIPTI 50 (487)
Q Consensus 28 ~l~LA~~L~~r~--GH~Vt~~~~~~ 50 (487)
+.+|+++|.+.. |++|+++.|+.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~ 40 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAF 40 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCC
Confidence 566777775421 37999999876
No 231
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.34 E-value=58 Score=31.62 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+--|+|+...+.|-+.-.-.||..|.+. |++|.++..+-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DT 177 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDT 177 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecch
Confidence 4456888899999999999999999887 99999999876
No 232
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.25 E-value=1.2e+02 Score=27.18 Aligned_cols=39 Identities=18% Similarity=0.014 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+|++.+.++-.|-....-++..|..+ |++|+++....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCC
Confidence 4689999999999999999999999776 99999998664
No 233
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=52.98 E-value=60 Score=30.47 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...++.|-..-++.++..++...|+.|.|++.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 46677778899999999999998654499999999875
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=52.64 E-value=93 Score=31.72 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.-|+|+..++.|-..-...||..|.++.|++|.++..+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 3456778888899999999999999664489999999876
No 235
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=52.43 E-value=24 Score=36.30 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=38.3
Q ss_pred ccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhcc-ceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLK-VSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+=||-||++.+.+. ++|++.+- .| +|... + ++++++.++|++++.+
T Consensus 262 ~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFLt---~---i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVD--LVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFMT---P---FHSEQYRDCLDAILKG 318 (508)
T ss_pred CCC--EEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcceec---c---cCHHHHHHHHHHHHcC
Confidence 455 99999999999999874 45665442 22 44432 2 6889999999999876
No 236
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.26 E-value=60 Score=27.85 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=55.1
Q ss_pred hhHHHHHhhCCceeccccc--cccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Q 011396 380 NSILESIVHGVPIIAWPLY--AEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDA 457 (487)
Q Consensus 380 gt~~eal~~GvP~l~~P~~--~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~ 457 (487)
-|+.|--.+|.=.+- |.- .=+..|+++.++ .|.=..+--+. .+++.|.++..+-|.|++.++++..+.++.++
T Consensus 88 ~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~~r-FgfPfI~aVkg---~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 88 ESTSEQASAGLDRLS-PEEFARFTELNAAYVER-FGFPFIIAVKG---NTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred hhHHHHHhcCcccCC-HHHHHHHHHHHHHHHHh-cCCceEEeecC---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 455666666654321 111 125579999999 99998877666 79999999999999987778888888887776
Q ss_pred HH
Q 011396 458 AA 459 (487)
Q Consensus 458 ~~ 459 (487)
.+
T Consensus 163 A~ 164 (176)
T COG3195 163 AL 164 (176)
T ss_pred HH
Confidence 54
No 237
>PRK04940 hypothetical protein; Provisional
Probab=52.20 E-value=39 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=25.2
Q ss_pred CceEEEeCCCc-chHHHHHHHhCCCeEEEecc
Q 011396 118 RLVALVVDIFG-SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 118 ~pD~vI~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
+++++|...+. +|+..+|+++|+|.|.++|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788877655 67889999999999998775
No 238
>PLN02924 thymidylate kinase
Probab=51.96 E-value=1.9e+02 Score=26.38 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=39.5
Q ss_pred CcccCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 1 METQNSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 1 ~~~~~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
||+.+...++++-|+|-...+.|-..-.-.|++.|..+ |++|.+..
T Consensus 6 ~~~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ 51 (220)
T PLN02924 6 METESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWR 51 (220)
T ss_pred cCCCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeee
Confidence 78888777777889999999999999999999999877 99986554
No 239
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=51.57 E-value=1.8e+02 Score=25.92 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=57.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhh
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRM 91 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (487)
--|.+.+..+-|-..-.+-+|-.-.-+ |.+|.++--=+.. ... .....+..++..+.++.++..-...... .
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~---~~~-GE~~~~~~~~~~v~~~~~~~g~tw~~~~---~ 100 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGG---WKY-GEEAALEKFGLGVEFHGMGEGFTWETQD---R 100 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecC---cch-hHHHHHHhhccceeEEecCCceeCCCcC---c
Confidence 347778889999999888888776665 7788877532200 000 1122233334567777776432221111 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch
Q 011396 92 ETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSA 130 (487)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~ 130 (487)
..+. .......+..++ ++.+.++|+||.|-+.+.
T Consensus 101 ~~d~-~aa~~~w~~a~~----~l~~~~ydlviLDEl~~a 134 (198)
T COG2109 101 EADI-AAAKAGWEHAKE----ALADGKYDLVILDELNYA 134 (198)
T ss_pred HHHH-HHHHHHHHHHHH----HHhCCCCCEEEEehhhHH
Confidence 1111 222223333333 334569999999986653
No 240
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.45 E-value=38 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.0
Q ss_pred cccccccch------hHHHHHhhCCceecccc
Q 011396 372 GFLSHCGWN------SILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HGG~g------t~~eal~~GvP~l~~P~ 397 (487)
+++.|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 788886654 67888999999999964
No 241
>PRK09165 replicative DNA helicase; Provisional
Probab=51.35 E-value=1e+02 Score=32.21 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=30.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhc--------------CCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQ--------------HNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r--------------~GH~Vt~~~~~~ 50 (487)
+++...|+.|-..-++.+|...+.+ .|..|.|++-+-
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM 270 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM 270 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC
Confidence 6778889999999999999888643 278899998775
No 242
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.27 E-value=1.1e+02 Score=30.34 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.-|+|+..-+.|-+.-.-.+|..+.++ |..+-+++.+-
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDT 139 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADT 139 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeecc
Confidence 3456788888999999999999999887 99999999887
No 243
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=51.24 E-value=23 Score=32.86 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=32.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDD 52 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~ 52 (487)
+=|++-.=|+-|-....-.||-.|++- +|.|.+++++..|
T Consensus 20 KwifVGGKGGVGKTTcs~sLAvqla~~-r~~vLiISTDPAH 59 (323)
T KOG2825|consen 20 KWIFVGGKGGVGKTTCSCSLAVQLAKV-RESVLIISTDPAH 59 (323)
T ss_pred eEEEEcCcCCcCccchhhHHHHHHhcc-CCceEEeecCccc
Confidence 345555567779999999999999776 8999999998743
No 244
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=51.12 E-value=33 Score=31.34 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHH
Q 011396 12 AHVAMVPTPGIGH--LIPQVELAKRLV 36 (487)
Q Consensus 12 ~~Il~~~~~~~GH--~~P~l~LA~~L~ 36 (487)
++|++..|+-+|. +||...+++.|.
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~ 28 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELD 28 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhcc
Confidence 4688877776654 899999999994
No 245
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=50.58 E-value=19 Score=36.85 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=21.5
Q ss_pred CCCceEEEeCCC--cchHHHHHHHhCCCeEEEecc
Q 011396 116 STRLVALVVDIF--GSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 116 ~~~pD~vI~D~~--~~~~~~~A~~lgIP~v~~~~~ 148 (487)
..+||+|+..+. ...|.++++++|||.+...++
T Consensus 399 ~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 358999997752 344668999999998876554
No 246
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=49.41 E-value=1.8e+02 Score=26.93 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceEEE-eCCCcc-hHHHHHHHhCCCeEEEecc
Q 011396 118 RLVALV-VDIFGS-AAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 118 ~pD~vI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
-||+++ .|+..- -+..=|.++|||+|.+.-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 499765 676443 3556788999999886543
No 247
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=49.13 E-value=1.2e+02 Score=28.31 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 27 PQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 27 P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+.+|+++|.+. | +|+++.|..
T Consensus 15 Gi~aL~~~l~~~-g-~V~VvAP~~ 36 (244)
T TIGR00087 15 GIRALYQALKEL-G-EVTVVAPAR 36 (244)
T ss_pred hHHHHHHHHHhC-C-CEEEEeCCC
Confidence 477899999766 7 899999876
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.75 E-value=1.2e+02 Score=30.77 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=33.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..|+|+..++.|-..-...||..|.++ |++|.+++.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcc
Confidence 457788888999999999999999876 99999999876
No 249
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=48.61 E-value=1.3e+02 Score=30.52 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=21.4
Q ss_pred cCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 115 ESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 115 ~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
++.+||++|.+.. ...+|+++|+|++.+
T Consensus 367 ~~~~pdliig~~~---~~~~a~~~gip~~~~ 394 (430)
T cd01981 367 ARTEPELIFGTQM---ERHIGKRLDIPCAVI 394 (430)
T ss_pred HhhCCCEEEecch---hhHHHHHcCCCEEEE
Confidence 3449999999982 344689999998765
No 250
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=48.55 E-value=1e+02 Score=27.46 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCceEEE-eCCCc-chHHHHHHHhCCCeEEEecc
Q 011396 117 TRLVALV-VDIFG-SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 117 ~~pD~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+.. ..+..=|.++|||.+.+.-+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 4799776 55433 34556788899999987544
No 251
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.05 E-value=1.6e+02 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|... ....+|+++|||++.+
T Consensus 393 ~~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 393 EYKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred hcCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 34899999863 3456788999998763
No 252
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=47.93 E-value=44 Score=24.86 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIF 46 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~ 46 (487)
+-++++..+...|...+-.+|+.|.+. |..|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 457888888899999999999999887 9987654
No 253
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.93 E-value=1.8e+02 Score=29.44 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=20.3
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+||++|.... ...+|+++|||++.
T Consensus 354 ~~~pDl~ig~s~---~~~~a~~~gip~~~ 379 (410)
T cd01968 354 EKKADLLVAGGK---ERYLALKLGIPFCD 379 (410)
T ss_pred hcCCCEEEECCc---chhhHHhcCCCEEE
Confidence 448999999853 34678899999874
No 254
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=47.80 E-value=25 Score=36.17 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred ccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHH
Q 011396 375 SHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRAL 454 (487)
Q Consensus 375 ~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l 454 (487)
-|=| -++.||+++|+|+|+.= +-.-+-.+.. .--|.-.++.+ -....+++++.++.+| +.++.++.+=
T Consensus 376 E~FG-iv~IEAMa~glPvvAt~----~GGP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~---p~l~~~~~~~ 443 (495)
T KOG0853|consen 376 EHFG-IVPIEAMACGLPVVATN----NGGPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRD---PELWARMGKN 443 (495)
T ss_pred CCcc-ceeHHHHhcCCCEEEec----CCCceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 4555 37899999999998764 3333344455 55666666533 3445799999999999 7776665543
No 255
>PLN02470 acetolactate synthase
Probab=47.49 E-value=77 Score=33.80 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=50.8
Q ss_pred EecCCCCCCH--HHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhh-cCCCeeecccC-C
Q 011396 285 CFGSGGTLSP--EQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT-KGVGLVVPSWS-P 360 (487)
Q Consensus 285 s~Gs~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~-p 360 (487)
+|||....+. ..-..+++.|+..|.+.++-+.+... ..+.+.+ +..++.+..-- .
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~---------------------~~l~dal~~~~~i~~i~~rhE 60 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS---------------------MEIHQALTRSNCIRNVLCRHE 60 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc---------------------HHHHHHHhccCCceEEEeccH
Confidence 3666433222 23566888888999998887776533 1111111 11122221100 1
Q ss_pred ccc-------cccccccccccccccch------hHHHHHhhCCceeccc
Q 011396 361 QVQ-------VLRHGSTGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 361 q~~-------~L~~~~~~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+.+ -......+++++|.|-| .+.+|...++|+|++.
T Consensus 61 ~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 61 QGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111 11112344888888865 7889999999999995
No 256
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=47.43 E-value=1.5e+02 Score=30.11 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.7
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|.... ...+|+++|||++.+
T Consensus 367 ~~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 367 RLKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HhCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 349999999885 556899999998653
No 257
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=46.96 E-value=97 Score=28.64 Aligned_cols=108 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred ccCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe-CCCCCCCCCCCc-----hhhhhhhcCCCCceEEe
Q 011396 3 TQNSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI-PTIDDGTGSSME-----PQRQVLESLPTSISTIF 76 (487)
Q Consensus 3 ~~~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~ 76 (487)
+....+...++|+++..---==..-+-.....|.++ ||+|++++ +.-..+...... ........ .....
T Consensus 2 ~~~~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~-G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a----~~~LG 76 (237)
T COG2120 2 TSLPPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAAR-GVEVTVVCLTLGEAGENGGELELGAVRRAEARAA----ARVLG 76 (237)
T ss_pred CCccccccCCcEEEEecCCcchhhccHHHHHHHHHC-CCeEEEEEccCCcccccCCccchHHHHHHHHHHH----HHhcC
Q ss_pred CCCCCCCCCCCchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEe
Q 011396 77 LPPVSFDDLPDDVRMETRITLTLARSLSSLRDALKVLAESTRLVALVV 124 (487)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~ 124 (487)
+.....-+++ ..........+.+.|.++++..+||+|++
T Consensus 77 v~~~~~l~~~---------~~~~~~~~~~~~~~L~~ii~~~~P~~V~t 115 (237)
T COG2120 77 VRETIFLGFP---------DTGADADPEEITGALVAIIRRLRPDVVFT 115 (237)
T ss_pred CCcceecCCC---------ccccccChHHHHHHHHHHHHHhCCCEEEe
No 258
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=46.68 E-value=1.8e+02 Score=26.28 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=26.8
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 14 VAMVP-TPGIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 14 Il~~~-~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
|++.+ ....|-..-.+.|++.|.++ |++|.++=+
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~KP 36 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYKP 36 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEee
Confidence 44443 44569999999999999887 999988754
No 259
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.52 E-value=2.1e+02 Score=29.19 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|.... ...+|+++|||++.+
T Consensus 375 ~~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 375 TEPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred hcCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 348999999873 468899999998754
No 260
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.51 E-value=22 Score=33.50 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=35.1
Q ss_pred cccccccchhHHHHHh------hCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 372 GFLSHCGWNSILESIV------HGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++|+-||-||+..+++ .++|++.+-.. .+|.-- + ++++++.+.+++++++
T Consensus 38 lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~---~---~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 38 IVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT---D---WRPFEVDKLVIALAKD 93 (265)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc---c---CCHHHHHHHHHHHHcC
Confidence 9999999999999987 47787665520 122222 1 5677788888888765
No 261
>PRK00784 cobyric acid synthase; Provisional
Probab=46.49 E-value=2.9e+02 Score=28.74 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=28.6
Q ss_pred cEEEEEcCCC-ccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 12 AHVAMVPTPG-IGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 12 ~~Il~~~~~~-~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
+.|++....+ -|-+.-...|++.|+++ |++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 4566665444 69999999999999887 999987744
No 262
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=46.21 E-value=65 Score=27.80 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=21.8
Q ss_pred ccccccccch------hHHHHHhhCCceeccc
Q 011396 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+++++|+|-| .+.+|...++|||++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3888888866 6679999999999995
No 263
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=46.16 E-value=30 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|+||++.-.|+.| .+=...+.+.|.++.||+|.++.++.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 3578877777777 77799999999773399999999986
No 264
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=45.66 E-value=2.4e+02 Score=29.30 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...|+.|-..=.+.++...+++ |.+|.|++.++
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eE 301 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFAYEE 301 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeC
Confidence 47788888999999999999999887 99999999887
No 265
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=45.44 E-value=63 Score=30.16 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 26 IPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 26 ~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
--+.+|+++|.+. |+|+++.|..
T Consensus 14 ~Gi~aL~~~l~~~--~~V~VvAP~~ 36 (250)
T PRK00346 14 PGIRALAEALREL--ADVTVVAPDR 36 (250)
T ss_pred hhHHHHHHHHHhC--CCEEEEeCCC
Confidence 3478899999654 6999999876
No 266
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.51 E-value=75 Score=28.55 Aligned_cols=35 Identities=6% Similarity=0.042 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhc-CCCEEEEEeCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQ-HNFLVTIFIPT 49 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r-~GH~Vt~~~~~ 49 (487)
+||+++..+..+-+. +|.+.+.+. .+++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 578888866644444 555566443 13778876654
No 267
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=44.00 E-value=2.8e+02 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=23.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.-==+. |.--+.+|+++|.+. | +|+++.|..
T Consensus 2 ~ILlTNDDGi-~apGi~aL~~al~~~-g-~V~VvAP~~ 36 (266)
T PRK13934 2 KILVTNDDGV-HSPGLRLLYEFVSPL-G-EVDVVAPET 36 (266)
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEccCC
Confidence 4555442222 334578899999665 6 799998876
No 268
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=43.94 E-value=2e+02 Score=29.76 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=20.8
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+||++|.. .....+|+++|||++.
T Consensus 391 ~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 391 EAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred hcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 3489999997 4456889999999873
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.36 E-value=2.3e+02 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
...|+++...|.|-..-...||..+.++ |++|.+++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDt 244 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDT 244 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCc
Confidence 3455666667889999999999999777 99999999876
No 270
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=43.24 E-value=2.2e+02 Score=31.04 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=28.7
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 13 HVAMVPTPG-IGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 13 ~Il~~~~~~-~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
.|++.+..+ .|-..=.+.|++.|.++ |.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCC
Confidence 577775444 69999999999999887 999999754
No 271
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=43.23 E-value=2.5e+02 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=30.2
Q ss_pred cEE-EEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHV-AMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~I-l~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+ +++..+..|-..-+|.-++....+ |-+|.++.+.-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~i 42 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAI 42 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 345 444445569999999999999888 99999998865
No 272
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.22 E-value=1.6e+02 Score=29.96 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=23.7
Q ss_pred HHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 112 VLAESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
++++..+||++|.+.. ...+|+++|||++.+
T Consensus 366 ~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 366 SYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3334559999999984 467899999998753
No 273
>PRK07206 hypothetical protein; Provisional
Probab=43.13 E-value=74 Score=32.14 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++|+++-....| ..+++++.+. |+++..+....
T Consensus 2 ~k~~liv~~~~~~-----~~~~~a~~~~-G~~~v~v~~~~ 35 (416)
T PRK07206 2 MKKVVIVDPFSSG-----KFLAPAFKKR-GIEPIAVTSSC 35 (416)
T ss_pred CCeEEEEcCCchH-----HHHHHHHHHc-CCeEEEEEcCC
Confidence 4578888754333 4688999776 99988887653
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=43.09 E-value=1.5e+02 Score=30.16 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=32.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..|+++..+|.|-..-...||..|..+.|++|.++..+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 356788888899999999999999633399999999876
No 275
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=43.00 E-value=2.3e+02 Score=27.18 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++..|.++..++.|-..-+..|+..|.++ |++|.++..+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~ 72 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDP 72 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 35667888888999999999999999887 99999988664
No 276
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=42.99 E-value=1.4e+02 Score=29.83 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCC-CEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHN-FLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~G-H~Vt~~~~~ 49 (487)
|++|+++..|.-|+ .+|+-|+++ | ++|+++.-.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~-~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQN-GDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhC-CCceEEEEeCC
Confidence 35688887766664 578888887 8 999999855
No 277
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.56 E-value=2.3e+02 Score=25.85 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=31.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...++.|-..-..+++...+++ |..|.|++.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~ 63 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTEN 63 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence 46777788899999999998877676 99999999876
No 278
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=42.40 E-value=51 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=17.6
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHH
Q 011396 12 AHVAMVPTPGIGH--LIPQVELAKRLV 36 (487)
Q Consensus 12 ~~Il~~~~~~~GH--~~P~l~LA~~L~ 36 (487)
|||++..|+-+|+ .||.-.+++.|.
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~ 27 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLP 27 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcC
Confidence 4688887776654 699999999994
No 279
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.28 E-value=35 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+||++.-.|+.|=.. ...+.+.|.++ |++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChh
Confidence 467777767666554 89999999877 99999999886
No 280
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=41.62 E-value=36 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=30.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.-.|+.|-+.-.+.+.+.|.+. |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 67777777777777777999999887 99999999876
No 281
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=41.59 E-value=2.5e+02 Score=24.76 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=36.0
Q ss_pred Hhh--CCceeccccc----ccc---chhhHhhhhhccceEEeeec---------CCCCcCHHHHHHHHHHhcc
Q 011396 386 IVH--GVPIIAWPLY----AEQ---KMNAVLLIDDLKVSFRVKVN---------ENGLVGREDIANYAKGLIQ 440 (487)
Q Consensus 386 l~~--GvP~l~~P~~----~DQ---~~na~~v~~~~G~G~~l~~~---------~~~~~~~~~l~~~i~~ll~ 440 (487)
+.. ++|++++|-. ... ..|-.++.+ .|+=+.-+.. .....+.++|.+.+.+.+.
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 455 8999999963 233 457778888 7776654432 1234577888888877764
No 282
>PRK08322 acetolactate synthase; Reviewed
Probab=41.42 E-value=30 Score=36.47 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.2
Q ss_pred cccccccccch------hHHHHHhhCCceeccc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33888888855 7889999999999885
No 283
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.34 E-value=39 Score=31.98 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=37.6
Q ss_pred cccccccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHH
Q 011396 362 VQVLRHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKG 437 (487)
Q Consensus 362 ~~~L~~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ 437 (487)
..+...++ ++|+=||-||+..+.+. ++|++.+-.. .+|...+ ++++++.+.+.+
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~~------~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLTD------IDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccccc------CCHHHHHHHHHH
Confidence 33444566 99999999999988663 5777655310 1333221 567788888888
Q ss_pred hcc
Q 011396 438 LIQ 440 (487)
Q Consensus 438 ll~ 440 (487)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 776
No 284
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=41.30 E-value=2e+02 Score=31.82 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=98.9
Q ss_pred cEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCC-----------CCCCCCchhHHHhh
Q 011396 280 SVLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMK-----------DPFDFLPKGFLDRT 348 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~ 348 (487)
..+|+++=.+...+-......++.|.+.|.+|+..+|-+..-+..+---++..+. .+++.+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 4899988776666667788899999999999999988764311100000000000 11234443322222
Q ss_pred cCCCeeecccCCccccccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCH
Q 011396 349 KGVGLVVPSWSPQVQVLRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGR 428 (487)
Q Consensus 349 ~~~~v~~~~~~pq~~~L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 428 (487)
.....++..-.||..+ -+.|+|+--.=++.+ .+|--.-|--+.. ..+|+..... ..
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivAM--TGDGVNDApALK~-AdIGIAMG~~-----GT 707 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVAM--TGDGVNDAPALKK-ADIGIAMGIS-----GT 707 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEEe--cCCCccchhhhhh-cccceeecCC-----cc
Confidence 2222333344454321 256777766666554 4787777777777 8888887632 23
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 011396 429 EDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWK 480 (487)
Q Consensus 429 ~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 480 (487)
+--.+|=+=+|.|+ .|. .+-+|++||.+.+.|+.+|++++-
T Consensus 708 dVaKeAsDMVL~DD---nFs--------tIvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 708 DVAKEASDMVLADD---NFS--------TIVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred HhhHhhhhcEEecC---cHH--------HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455666678873 342 233567789999999999998764
No 285
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=41.20 E-value=60 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.6
Q ss_pred cccccccccch------hHHHHHhhCCceecccc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAWPL 397 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~P~ 397 (487)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33777777755 66788999999999963
No 286
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=40.93 E-value=2.7e+02 Score=27.73 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=26.0
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVP-TPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~-~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
.++|+++. .|..|. .+|+.|.++ ||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCC
Confidence 46799887 677775 588999877 9999998754
No 287
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=40.93 E-value=1.6e+02 Score=22.28 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=22.7
Q ss_pred HHHHhcCCCceEEEeCCC---------cchHHHHHHHhCCCeE
Q 011396 110 LKVLAESTRLVALVVDIF---------GSAAFDVANEFGVPVY 143 (487)
Q Consensus 110 l~~~~~~~~pD~vI~D~~---------~~~~~~~A~~lgIP~v 143 (487)
+.+++++.++|+||..+. ...-..+|...+||++
T Consensus 47 i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 344556779999997542 1123358888999976
No 288
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=40.80 E-value=2.3e+02 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=24.3
Q ss_pred cCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 011396 18 PTPGIGHLIPQVELAKRLVHQHNFLVTIF 46 (487)
Q Consensus 18 ~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~ 46 (487)
+.++.|-..=.+.|++.|.++ |.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 456679999999999999887 9999886
No 289
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.63 E-value=1.1e+02 Score=29.49 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=37.8
Q ss_pred ccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+=||-||+.++++. ++|++.+... + +|... + .+.+++.++|++++.+
T Consensus 62 ~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGFl~---~---~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGFLT---D---IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---ccccc---c---CCHHHHHHHHHHHHcC
Confidence 355 99999999999999763 5677665531 1 22221 2 6789999999999875
No 290
>PRK05920 aromatic acid decarboxylase; Validated
Probab=40.61 E-value=39 Score=30.42 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++||++.-.|+.+ .+=.+.+.+.|.+. ||+|+++.++.
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~-g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAA-DYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHC-CCEEEEEEChh
Confidence 4578777656544 47899999999887 99999999986
No 291
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.61 E-value=43 Score=30.05 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++|++-..||-|-++-||.=|+.|.++ |.+|.+-.-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecC
Confidence 5789999999999999999999999888 99999876553
No 292
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=40.46 E-value=3.1e+02 Score=25.52 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=28.1
Q ss_pred cEEEEE-cCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 12 AHVAMV-PTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 12 ~~Il~~-~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
+.|+++ +-||-|-+.=..+||..|++. |++|..+=
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID 37 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARL-GESVLAID 37 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 345444 456779999999999999887 99998874
No 293
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=40.38 E-value=81 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEEcCCCcc--CHHHHHHHHHHHHh
Q 011396 13 HVAMVPTPGIG--HLIPQVELAKRLVH 37 (487)
Q Consensus 13 ~Il~~~~~~~G--H~~P~l~LA~~L~~ 37 (487)
+|++..|+-+| ..||.-.+++.|..
T Consensus 2 ~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 2 KVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 57777766664 47999999999943
No 294
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.32 E-value=1.4e+02 Score=28.32 Aligned_cols=172 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCc---ccc
Q 011396 288 SGGTLSPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQ---VQV 364 (487)
Q Consensus 288 s~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq---~~~ 364 (487)
|...-...-+...++.+++.+.+++..+.+...-..-+.|+...+...........++ +++..|+|| ..+
T Consensus 182 slFaY~npa~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lr-------vvklPFvpqddyd~L 254 (370)
T COG4394 182 SLFAYENPALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLR-------VVKLPFVPQDDYDEL 254 (370)
T ss_pred hhhccCCcchHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceE-------EEEecCCcHhHHHHH
Q ss_pred ccccccccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCch-
Q 011396 365 LRHGSTGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEE- 443 (487)
Q Consensus 365 L~~~~~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~- 443 (487)
|-.||+.++ -|--|+.-|.-+|+|.+=.=+.-|....-..++. .+++.- .+-+.+.++++++..-+-.
T Consensus 255 L~lcD~n~V---RGEDSFVRAq~agkPflWHIYpQdentHl~KLea------Fldky~--~~lp~~~a~alrt~~~~~N~ 323 (370)
T COG4394 255 LWLCDFNLV---RGEDSFVRAQLAGKPFLWHIYPQDENTHLAKLEA------FLDKYC--PFLPPNTAKALRTFWIAWNA 323 (370)
T ss_pred HHhccccee---ecchHHHHHHHcCCCcEEEecCCccccHHHHHHH------HHHHhC--CCCCHHHHHHHHHHHHHhcC
Q ss_pred hH-------------HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 011396 444 GK-------------LLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKN 481 (487)
Q Consensus 444 ~~-------------~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 481 (487)
|+ ..|+.|++++..+-. .++-...+-.|++++.+
T Consensus 324 ~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~----~~dlaekLvaF~ek~~k 370 (370)
T COG4394 324 GRLSDDWSYFFKNLKEWREHAKKWANHLIK----NPDLAEKLVAFIEKIGK 370 (370)
T ss_pred CcccccHHHHHHhhHHHHHHHHHHHHHHcc----CccHHHHHHHHHHHhcC
No 295
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=40.25 E-value=46 Score=27.98 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
++++|++.+.+..||-.-.--+++.|+.. |.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhC-CceEEecCC
Confidence 57899999999999999999999999876 999988654
No 296
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=40.15 E-value=1.9e+02 Score=30.66 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=61.8
Q ss_pred CCCcEEEEEcCC-----CccCHHHHHHHHHHHHhcCCCEEEEE-eCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCC
Q 011396 9 IPRAHVAMVPTP-----GIGHLIPQVELAKRLVHQHNFLVTIF-IPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSF 82 (487)
Q Consensus 9 ~~~~~Il~~~~~-----~~GH~~P~l~LA~~L~~r~GH~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (487)
..+++|.++... ..-|+..+-.++++-++..|.-...+ .++. . .+++. ..
T Consensus 62 ~~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a---------~--------cDGit---~G---- 117 (601)
T TIGR01196 62 MKRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVAGGVPA---------M--------CDGVT---QG---- 117 (601)
T ss_pred cCCCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEeCCcCc---------c--------CCCcc---CC----
Confidence 357788888743 44566777777777666557666666 3332 0 01110 00
Q ss_pred CCCCCchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHh-CCCeEEEecch
Q 011396 83 DDLPDDVRMETRITLTLARSLSSLRDALKVLAESTRLVALV----VDIFGSAAFDVANEF-GVPVYIFFTTT 149 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~l-gIP~v~~~~~~ 149 (487)
..+. .+.....+.+.+.++..+..+.+|-+| +|-..+..+.+|-.+ ++|.+++...+
T Consensus 118 ---~~GM-------~~SL~SRdlIA~sie~~l~~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGp 179 (601)
T TIGR01196 118 ---YDGM-------ELSLFSRDVIAMSTAIGLSHNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGP 179 (601)
T ss_pred ---Cccc-------chhhhcHHHHHHHHHHHhcCCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 0111 111112233334444555677899766 788778777888899 89998876553
No 297
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.75 E-value=58 Score=28.89 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred eEEEeCCCc-chHHHHHHHhCCCeEEEecchH
Q 011396 120 VALVVDIFG-SAAFDVANEFGVPVYIFFTTTA 150 (487)
Q Consensus 120 D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 150 (487)
.++|...+. +++..+|+++|+|.|.++|+..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 366766654 4566799999999998877643
No 298
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=39.50 E-value=1.5e+02 Score=25.90 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCE--EEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFL--VTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~--Vt~~~~~~ 50 (487)
|||+|+..++. ..+..+.++|.++ +|+ +..+.+..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~ 37 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNP 37 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESS
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccc
Confidence 46777754444 5566677788776 887 55555543
No 299
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=39.48 E-value=57 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+|++.+.++-.|-....=++..|.+. |++|+++....
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~ 120 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDV 120 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 5689999999999999999899988665 99999887543
No 300
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.19 E-value=96 Score=28.09 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=19.1
Q ss_pred EEEEEcCCCccC--HHHHHHHHHHHHh
Q 011396 13 HVAMVPTPGIGH--LIPQVELAKRLVH 37 (487)
Q Consensus 13 ~Il~~~~~~~GH--~~P~l~LA~~L~~ 37 (487)
+|++..|+-+|. .||.-.+++.|.+
T Consensus 2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 2 TVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 477777766644 7999999999943
No 301
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=38.88 E-value=1.9e+02 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=21.2
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
..+||++|..... ..+|+++|||++.+
T Consensus 393 ~~~pDllig~~~~---~~~a~k~gip~~~~ 419 (457)
T TIGR01284 393 KYKPDIILTGIRE---GELAKKLGVPYINI 419 (457)
T ss_pred hcCCCEEEecCCc---chhhhhcCCCEEEc
Confidence 3499999988733 56899999998764
No 302
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.65 E-value=43 Score=32.09 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=37.3
Q ss_pred cccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 366 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
..++ ++|+=||-||+..+++. ++|++.+-.. .+|..- + ++++++.+++++++++
T Consensus 62 ~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl~---~---~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 62 QQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFLT---D---LDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCccc---c---cCHHHHHHHHHHHHcC
Confidence 3456 99999999999999863 5676554420 012222 1 5788899999999875
No 303
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=38.58 E-value=88 Score=28.47 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccC--HHHHHHHHHHHH
Q 011396 12 AHVAMVPTPGIGH--LIPQVELAKRLV 36 (487)
Q Consensus 12 ~~Il~~~~~~~GH--~~P~l~LA~~L~ 36 (487)
++|++..|+-+|+ .||.-.++++|.
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~ 28 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLP 28 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHcc
Confidence 5688888777654 799999999993
No 304
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.27 E-value=42 Score=32.11 Aligned_cols=54 Identities=9% Similarity=0.184 Sum_probs=36.3
Q ss_pred cccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 366 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
..++ ++|+-||-||+..+++. ++|++.+-.. .+|.-. + ++.+++.+++++++.+
T Consensus 63 ~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 63 KISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGFLT---D---ITVDEAEKFFQAFFQG 120 (287)
T ss_pred cCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------CcccCC---c---CCHHHHHHHHHHHHcC
Confidence 3456 99999999999988763 6776554310 112211 1 5678888888888775
No 305
>PRK14098 glycogen synthase; Provisional
Probab=38.08 E-value=52 Score=34.17 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=29.2
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTP------GIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~------~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++++|++++.- +.|=-.-+-+|.++|+++ ||+|.++.|..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 35789998742 223334567888999887 99999999854
No 306
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.89 E-value=2.3e+02 Score=28.67 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=20.7
Q ss_pred CCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 117 TRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 117 ~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
.+||+||.....- .+|+++|||++.+
T Consensus 357 ~~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 357 LKPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred cCCCEEEecCccc---hhhhhcCCCEEec
Confidence 3899999887443 5899999998764
No 307
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.88 E-value=2e+02 Score=30.19 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=21.7
Q ss_pred cCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 115 ESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 115 ~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
++.+||+||.+. ....+|+++|||++.+
T Consensus 359 ~~~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 359 AEAAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HhcCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 344999999877 3456899999998764
No 308
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=37.50 E-value=2.1e+02 Score=27.14 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=56.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhh
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRM 91 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (487)
+=|+++..|+.|-..-...|++.|.+. |.+|.++..+. .. . .. .. ......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~~----------~~--~---~~------------~~-y~~~~~ 52 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDDS----------LG--I---DR------------ND-YADSKK 52 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-THH----------HH------TT------------SS-S--GGG
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcccc----------cc--c---ch------------hh-hhchhh
Confidence 348899999999999999999999776 99999987543 11 0 00 01 001111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcc-hHH-----HHHHHhCCCeEEEecchHHHHHHHh
Q 011396 92 ETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGS-AAF-----DVANEFGVPVYIFFTTTAMVLSLIF 157 (487)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~-~~~-----~~A~~lgIP~v~~~~~~~~~~~~~~ 157 (487)
....... ++..++..+. +-++||.|...+ -+. -+|+..+.++++++...+...+...
T Consensus 53 Ek~~R~~-------l~s~v~r~ls--~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 53 EKEARGS-------LKSAVERALS--KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp HHHHHHH-------HHHHHHHHHT--T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred hHHHHHH-------HHHHHHHhhc--cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 1112221 2222232222 348999997554 333 4999999999888777666555443
No 309
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=37.22 E-value=45 Score=31.96 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=36.8
Q ss_pred ccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+-||-||++++++. ++|++.+-+ - .+|... + .+.+++.+++++++.+
T Consensus 63 ~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~-----------G---~lGFL~---~---~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINH-----------G---RLGFIT---D---IPLDDMQETLPPMLAG 119 (291)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------C---Cccccc---c---CCHHHHHHHHHHHHcC
Confidence 456 99999999999999884 567655441 1 122222 1 5778888888888775
No 310
>PRK11823 DNA repair protein RadA; Provisional
Probab=36.90 E-value=3.2e+02 Score=27.98 Aligned_cols=37 Identities=24% Similarity=0.183 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...|+.|-..=++.++..+.++ |++|.|++.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccc
Confidence 45777788899999999999999876 99999999876
No 311
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.87 E-value=39 Score=33.81 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-|++-.-|+-|--.=+|+++..|+++ | +|.|++.++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEE 130 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEE 130 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCc
Confidence 47788889999999999999999888 8 999999987
No 312
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.51 E-value=45 Score=32.18 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=37.4
Q ss_pred ccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+=||-||+..+.+. ++|++.+-+ . .+|.-. + ++++++.+++++++++
T Consensus 68 ~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFLt---~---~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMK--FAIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFLT---E---AYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCcccc---c---CCHHHHHHHHHHHHcC
Confidence 355 99999999999999875 778766542 0 112111 1 5678888999998876
No 313
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.18 E-value=65 Score=30.25 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=26.1
Q ss_pred HHHHhcCCCceEEEeCCCcc------hHHHHHHHhCCCeEEEec
Q 011396 110 LKVLAESTRLVALVVDIFGS------AAFDVANEFGVPVYIFFT 147 (487)
Q Consensus 110 l~~~~~~~~pD~vI~D~~~~------~~~~~A~~lgIP~v~~~~ 147 (487)
|.+.++..++|+|++...+. -+..+|+.||+|++++..
T Consensus 103 Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 103 LAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 33444455999999653332 366899999999987543
No 314
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=36.01 E-value=2.9e+02 Score=28.09 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++.+...+.. .+.+++.|.+- |-+|..+++..
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~ 318 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAI 318 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCC
Confidence 36777776655 77888888764 99999887663
No 315
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=35.91 E-value=2.8e+02 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++...++.|-......++..|.++ |.+|.++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCC
Confidence 6778889999999999999999887 99999998765
No 316
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=35.55 E-value=1.5e+02 Score=28.87 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=30.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.++..++.|-.+=.+.++...+++ |..+.|+.++.
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~ 93 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEH 93 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccc
Confidence 4566678889999999999998777 99999998876
No 317
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=35.11 E-value=32 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=25.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|.++..|..|+ ++|..|.++ ||+|++...+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 366676666665 789999887 99999998874
No 318
>PRK04296 thymidine kinase; Provisional
Probab=34.96 E-value=2.2e+02 Score=25.15 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=28.4
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 13 HVAMVPTP-GIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 13 ~Il~~~~~-~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
.|.+++.+ +.|=..=++.++..+..+ |.+|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEec
Confidence 35555554 899999999999999877 999998854
No 319
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.84 E-value=4.3e+02 Score=25.55 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=20.7
Q ss_pred EEEEEcCCCc--cCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGI--GHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~--GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|++...-++ +| .+.+|.++ ||+|+++=.-.
T Consensus 2 ~iLVtGGAGYIGSH------tv~~Ll~~-G~~vvV~DNL~ 34 (329)
T COG1087 2 KVLVTGGAGYIGSH------TVRQLLKT-GHEVVVLDNLS 34 (329)
T ss_pred eEEEecCcchhHHH------HHHHHHHC-CCeEEEEecCC
Confidence 4666554444 55 46788887 99999985443
No 320
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=34.63 E-value=1.6e+02 Score=28.67 Aligned_cols=37 Identities=3% Similarity=-0.084 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+.++..++.|-.+=.+.++.+.+++ |..|.|+.++.
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~ 93 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEH 93 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccc
Confidence 35667778889999999999998777 99999998765
No 321
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=34.53 E-value=82 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 011396 281 VLFVCFGSGGTLSPEQLNELALGLEMSGQRFLWV 314 (487)
Q Consensus 281 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (487)
.+|+++||-...+.+.++..+.+|...+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999977777777888888888876533333
No 322
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=34.39 E-value=79 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=29.1
Q ss_pred EcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 17 VPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 17 ~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++.|+.|-+--.+.||++|++| |..+-+++-..
T Consensus 55 ltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhc-CCeeEEEecCc
Confidence 3578899999999999999998 99999998765
No 323
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=34.28 E-value=2.4e+02 Score=25.91 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCceEEE-eCCCc-chHHHHHHHhCCCeEEEecc
Q 011396 117 TRLVALV-VDIFG-SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 117 ~~pD~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+.- ..+..=|..+|||++.+.-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDT 187 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDT 187 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeC
Confidence 4699766 56543 34566788899999886543
No 324
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.05 E-value=86 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=25.4
Q ss_pred ccCHHHHHH---HHHHHHhcCCCEEEEEeCCCCCCCC
Q 011396 22 IGHLIPQVE---LAKRLVHQHNFLVTIFIPTIDDGTG 55 (487)
Q Consensus 22 ~GH~~P~l~---LA~~L~~r~GH~Vt~~~~~~~~~~~ 55 (487)
.||++++++ +|+.+..+ ||+|.|++....+|+.
T Consensus 22 lGH~~~~l~ADv~aRy~Rl~-G~~v~fvtGtDeHGt~ 57 (558)
T COG0143 22 LGHLYTYLAADVYARYLRLR-GYEVFFLTGTDEHGTK 57 (558)
T ss_pred hhhHHHHHHHHHHHHHHHhc-CCeEEEEeccCCCCCH
Confidence 499998775 67887666 9999999977645433
No 325
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=34.04 E-value=56 Score=30.02 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCEEEEEeCC
Q 011396 28 QVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 28 ~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
-.+||++|.++ ||+|+++...
T Consensus 29 G~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhC-CCEEEEEECc
Confidence 36788999888 9999998744
No 326
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=33.90 E-value=1.1e+02 Score=31.07 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=21.6
Q ss_pred cccccccccch------hHHHHHhhCCceecc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAW 395 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~ 395 (487)
.+++++|.|-| .+.+|.+-++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 33888888865 677999999999999
No 327
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=33.83 E-value=81 Score=27.26 Aligned_cols=38 Identities=21% Similarity=0.117 Sum_probs=26.2
Q ss_pred HHHHhcCCCceEEEeCCCcc---hHHHHHHHhCCCeEEEec
Q 011396 110 LKVLAESTRLVALVVDIFGS---AAFDVANEFGVPVYIFFT 147 (487)
Q Consensus 110 l~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgIP~v~~~~ 147 (487)
+.+++++.+||+|+...... .++.+|.+||.|+++-..
T Consensus 75 l~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 75 LVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred HHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 34444445899999765443 366899999999887433
No 328
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.70 E-value=1.1e+02 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=22.4
Q ss_pred cCCCceEEEeCCCcchHH----HHHHHhCCCeEEE
Q 011396 115 ESTRLVALVVDIFGSAAF----DVANEFGVPVYIF 145 (487)
Q Consensus 115 ~~~~pD~vI~D~~~~~~~----~~A~~lgIP~v~~ 145 (487)
++.+.|+||+=...-.+. .+|+.+|||++++
T Consensus 191 ~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 191 RQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 344999999765433332 5999999999885
No 329
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.68 E-value=54 Score=31.65 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=38.9
Q ss_pred cccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 366 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
..++ ++|+=||-||+..+.+. ++|++.+.+. .+|.-.+ ..++++.+++++++.+
T Consensus 71 ~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 71 DGCE--LVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLAE------AEAEDLDEAVERVVDR 128 (306)
T ss_pred cCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceecc------CCHHHHHHHHHHHHcC
Confidence 3456 99999999999999774 7788766531 1233222 5678888899888876
No 330
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=33.67 E-value=3.8e+02 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=31.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...|+.|-..=++.+|..+.++ |.+|.|++.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCc
Confidence 35677778889999999999999876 89999998775
No 331
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=33.49 E-value=55 Score=29.60 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
=|.+..+|+.|-..-.-.||++|.++ +|+|..+..+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKDY 39 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchhh
Confidence 47788899999999999999999887 99988776654
No 332
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=33.37 E-value=90 Score=27.24 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=55.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhH
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRME 92 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (487)
-+++..+.+.|-+.=+.++.+ ...+ |+++.++..+. ....-.+..... .++....+.+...-
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~-~~~~~vI~ne~-----g~~~iD~~~l~~--~~~~v~~l~~gcic--------- 63 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQ-GERVAVIVNEF-----GEVNIDAELLQE--DGVPVVELNNGCIC--------- 63 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTT-TS-EEEEECST-----TSTHHHHHHHHT--TT-EEEEECTTTES---------
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcC-CceeEEEEccc-----cccccchhhhcc--cceEEEEecCCCcc---------
Confidence 367888999999999999998 4355 99999999885 222233444442 24566666654321
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCC--CceEEEeCCCc
Q 011396 93 TRITLTLARSLSSLRDALKVLAEST--RLVALVVDIFG 128 (487)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~~--~pD~vI~D~~~ 128 (487)
+.....+.+.+.++.+.. +||.||.....
T Consensus 64 -------c~~~~~~~~~l~~l~~~~~~~~d~IiIE~sG 94 (178)
T PF02492_consen 64 -------CTLRDDLVEALRRLLREYEERPDRIIIETSG 94 (178)
T ss_dssp -------S-TTS-HHHHHHHHCCCCHGC-SEEEEEEEC
T ss_pred -------cccHHHHHHHHHHHHHhcCCCcCEEEECCcc
Confidence 111223455666776666 89999966433
No 333
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=33.26 E-value=85 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=31.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCE-EEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFL-VTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~-Vt~~~~~~ 50 (487)
+=|+|+..|..|-......|.++|+++ ||+ +..+..+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~-~~K~~v~ii~de 40 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKER-GTKQSVRIIDDE 40 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhh-cccceEEEechh
Confidence 458999999999999999999999998 976 44444443
No 334
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.08 E-value=47 Score=31.56 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=34.6
Q ss_pred cccccccchhHHHHHhh---CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 372 GFLSHCGWNSILESIVH---GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~---GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++|.-||-||++++++. ++|++.++... + |..- + +.++++.+++++++.+
T Consensus 60 ~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GFl~---~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 60 FIIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GFLT---E---VEPEETFFALSRLLEG 112 (277)
T ss_pred EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cccc---c---CCHHHHHHHHHHHHcC
Confidence 99999999999999853 45777776310 0 1111 1 5677888888888765
No 335
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.03 E-value=53 Score=31.51 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=38.0
Q ss_pred cccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 366 RHGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 366 ~~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
..++ ++|+=||-||++.+++. ++|++.+-+. .+|.-- + ++++++.+++++++++
T Consensus 63 ~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFLt---~---~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 63 GSAD--MVISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFLA---T---VSKEEIEETIDELLNG 120 (292)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCccc---c---cCHHHHHHHHHHHHcC
Confidence 3456 99999999999999883 6787655421 122222 1 5778899999999876
No 336
>PRK04946 hypothetical protein; Provisional
Probab=32.90 E-value=46 Score=29.33 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.7
Q ss_pred ecccCCc-cccccccccccccccccchhH
Q 011396 355 VPSWSPQ-VQVLRHGSTGGFLSHCGWNSI 382 (487)
Q Consensus 355 ~~~~~pq-~~~L~~~~~~~~I~HGG~gt~ 382 (487)
+..|+.| ..|++.+. +=-+|||.|.+
T Consensus 142 V~~wL~q~~~V~af~~--A~~~~GG~GA~ 168 (181)
T PRK04946 142 TPLWLAQHPDVMAFHQ--APKEWGGDAAL 168 (181)
T ss_pred HHHHHcCCchhheeec--cCcccCCceEE
Confidence 5578876 77888777 78899999865
No 337
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=32.88 E-value=3.3e+02 Score=24.95 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=31.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
--+++...|+.|-..=.+.++.+-+++ |..+.|++.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee 59 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEE 59 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeC
Confidence 347788888999999888877765576 99999999876
No 338
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=32.57 E-value=2.4e+02 Score=29.27 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=61.5
Q ss_pred ccchhHHHHHhhCCceecccccc------ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHH
Q 011396 377 CGWNSILESIVHGVPIIAWPLYA------EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSK 450 (487)
Q Consensus 377 GG~gt~~eal~~GvP~l~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~ 450 (487)
||. |=++|+++|.+-|+.++.+ |-..+. ... -|.|+.... .+++++..++.+.+ .-|+..
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~-~gtGf~f~~-----~~~~~l~~al~rA~-----~~y~~~ 446 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQG-VGTGFLFLQ-----TNPDHLANALRRAL-----VLYRAP 446 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccC-ceeEEEEec-----CCHHHHHHHHHHHH-----HHhhCC
Confidence 454 5678999999999999864 333333 333 566666654 58999999999887 456665
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhh
Q 011396 451 MRALKDAAANALSPDGSSTKSLAQVAQKWKNLE 483 (487)
Q Consensus 451 a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 483 (487)
-..+.....+++...-|-++...+.++-.+...
T Consensus 447 ~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~~ 479 (487)
T COG0297 447 PLLWRKVQPNAMGADFSWDLSAKEYVELYKPLL 479 (487)
T ss_pred HHHHHHHHHhhcccccCchhHHHHHHHHHHHHh
Confidence 555666666665555555556666665555543
No 339
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.52 E-value=4.4e+02 Score=25.68 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=57.1
Q ss_pred cEEEEEcCCCc-----cCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCC
Q 011396 12 AHVAMVPTPGI-----GHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLP 86 (487)
Q Consensus 12 ~~Il~~~~~~~-----GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (487)
+.|+|.|..+. --..-+..|++.|.++ |.+|.++.+.. -. +....+...++.... +..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-~~~Vvl~g~~~----e~--e~~~~i~~~~~~~~~---l~~------- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAK-GYQVVLFGGPD----EE--ERAEEIAKGLPNAVI---LAG------- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHC-CCEEEEecChH----HH--HHHHHHHHhcCCccc---cCC-------
Confidence 56788876233 2345689999999988 98888887654 10 112223332221111 110
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecc
Q 011396 87 DDVRMETRITLTLARSLSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
. ..+.++..++. ..|++|+.... ...+|..+|.|+|.++..
T Consensus 239 --k-----------~sL~e~~~li~------~a~l~I~~DSg--~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 --K-----------TSLEELAALIA------GADLVIGNDSG--PMHLAAALGTPTIALYGP 279 (334)
T ss_pred --C-----------CCHHHHHHHHh------cCCEEEccCCh--HHHHHHHcCCCEEEEECC
Confidence 0 02233333443 78888866522 346888899999988754
No 340
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=32.12 E-value=48 Score=28.46 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=23.1
Q ss_pred HHhcCCCceEEEeCCCcch---HHHHHHHhCCCeEEEec
Q 011396 112 VLAESTRLVALVVDIFGSA---AFDVANEFGVPVYIFFT 147 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~---~~~~A~~lgIP~v~~~~ 147 (487)
+++++.+||+|+....... ++.+|.+||.|++.-..
T Consensus 84 ~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 84 ELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 3333349999997764443 55799999999887433
No 341
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=31.47 E-value=79 Score=33.61 Aligned_cols=27 Identities=11% Similarity=0.501 Sum_probs=22.1
Q ss_pred cccccccccch------hHHHHHhhCCceeccc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33888888866 5789999999999884
No 342
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.24 E-value=88 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=38.1
Q ss_pred ccccccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+=||-||+..+.+. ++|++.+-.. -+|.-.+ ++.+++.+++++++++
T Consensus 68 ~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL~~------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGFLTQ------IPREYMTDKLLPVLEG 124 (296)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeEeec------cCHHHHHHHHHHHHcC
Confidence 456 99999999999999763 6787665421 1233322 6788899999998876
No 343
>PRK07413 hypothetical protein; Validated
Probab=31.19 E-value=5.3e+02 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=34.0
Q ss_pred ccCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCC------EEEEEeC
Q 011396 3 TQNSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNF------LVTIFIP 48 (487)
Q Consensus 3 ~~~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH------~Vt~~~~ 48 (487)
.|+++.+.+--|-+.+..+.|-..-.+.+|-.-+-+ |. +|.++--
T Consensus 11 ~~~~~~~~~Gli~VytG~GKGKTTAAlGlalRA~G~-G~~~~~~~rV~ivQF 61 (382)
T PRK07413 11 AQDSSERSKGQLHVYDGEGKGKSQAALGVVLRTIGL-GICEKRQTRVLLLRF 61 (382)
T ss_pred cccCccccCCeEEEEeCCCCCHHHHHHHHHHHHhcC-CCCcCCCCeEEEEEE
Confidence 355555666678999999999999888887776555 76 8888763
No 344
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=31.12 E-value=2.7e+02 Score=26.16 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCceEEE-eCCCc-chHHHHHHHhCCCeEEEecc
Q 011396 117 TRLVALV-VDIFG-SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 117 ~~pD~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+.- ..+..=|.++|||+|.+.-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 3699766 56533 34566788899999886543
No 345
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.04 E-value=63 Score=28.32 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=24.0
Q ss_pred ccCHHH-HHHHHHHHHhcCCCEEEEEeCCC
Q 011396 22 IGHLIP-QVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 22 ~GH~~P-~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.||... .+.+.+.|.++.||+|.++.++.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 377755 88999999866699999999886
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.81 E-value=4.2e+02 Score=25.73 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
...|+++..+|.|-..=...||..|..+ |++|.++..+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCc
Confidence 3467788888899999999999999876 99999998765
No 347
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=30.76 E-value=1.1e+02 Score=24.74 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++..-++.|-......|++.|+++ |.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 48889999999999999999999887 99998887654
No 348
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.76 E-value=98 Score=28.11 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
...+|++.+.++-.|-....=++..|..+ |++|+++....
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCC
Confidence 35689999999999999998888888665 99999998654
No 349
>PRK13768 GTPase; Provisional
Probab=30.72 E-value=2e+02 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=31.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.-+++...++.|-..=...++..|.++ |++|.++.-+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCC
Confidence 456777778889999999999999776 99999987554
No 350
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=30.51 E-value=94 Score=33.15 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred ccccccccch------hHHHHHhhCCceeccc
Q 011396 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+++++|.|-| .+.+|.+-++|+|++.
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3888888755 7889999999999884
No 351
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=30.28 E-value=5.2e+02 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=26.8
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 14 VAMVP-TPGIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 14 Il~~~-~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
|++.. ..+.|-..=...|++.|.++ |++|..+=+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEcc
Confidence 45553 33468899999999999887 999999854
No 352
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=30.19 E-value=1e+02 Score=27.93 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=30.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+++...|+.|-..=.+.++..-+++ |+.|.|++.+.
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~ 54 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE 54 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 45666777889988888888877677 99999999876
No 353
>PRK06921 hypothetical protein; Provisional
Probab=30.02 E-value=2.5e+02 Score=26.46 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
..++|...+|.|=..=+.+||++|.++.|+.|.|++..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 45888888888888888899999876448888887643
No 354
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=29.98 E-value=4.4e+02 Score=30.00 Aligned_cols=28 Identities=11% Similarity=-0.180 Sum_probs=21.4
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEEEe
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYIFF 146 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~ 146 (487)
..+||++|.... ...+|+++|||++-..
T Consensus 387 ~~~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 387 EKMPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred hcCCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 349999998653 3568899999998654
No 355
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=29.93 E-value=80 Score=31.50 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=46.2
Q ss_pred cccccccchhHHHHHhh-----------------CCceeccccccccchhhHhhhhhccceEE-eeecCCCCcCHHHHHH
Q 011396 372 GFLSHCGWNSILESIVH-----------------GVPIIAWPLYAEQKMNAVLLIDDLKVSFR-VKVNENGLVGREDIAN 433 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~-----------------GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~l~~ 433 (487)
.++|.||..+.+.|+.+ +.|.|.++-.. ++-+..-+.- +|+|++ ++.++++.+..++|.+
T Consensus 106 G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~-lGlg~~~I~~~~~~~md~~~L~~ 183 (373)
T PF00282_consen 106 GVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARI-LGLGVRKIPTDEDGRMDIEALEK 183 (373)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHH-TTSEEEEE-BBTTSSB-HHHHHH
T ss_pred eeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcce-eeeEEEEecCCcchhhhHHHhhh
Confidence 88999998888777533 24566665444 5666666666 899966 4556567789999999
Q ss_pred HHHHhccC
Q 011396 434 YAKGLIQG 441 (487)
Q Consensus 434 ~i~~ll~~ 441 (487)
+|++...+
T Consensus 184 ~l~~~~~~ 191 (373)
T PF00282_consen 184 ALEKDIAN 191 (373)
T ss_dssp HHHHHHHT
T ss_pred hhcccccc
Confidence 88776543
No 356
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=29.90 E-value=69 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=19.8
Q ss_pred CCceEEEeCCCcch--HHHHHHHhCCCeEEE
Q 011396 117 TRLVALVVDIFGSA--AFDVANEFGVPVYIF 145 (487)
Q Consensus 117 ~~pD~vI~D~~~~~--~~~~A~~lgIP~v~~ 145 (487)
.+||+||....... .....+..|||++.+
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i 98 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYV 98 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEe
Confidence 39999998653332 334557789998775
No 357
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=29.84 E-value=2.4e+02 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCc-cCH---HHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGI-GHL---IPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~-GH~---~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+..|++.++.+. .-- .-+..|++.|.++ |.+|.++.++.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~-~~~vvl~g~~~ 147 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKER-GYRVVLLGGPE 147 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCC-T-EEEE--SSH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhh-CceEEEEccch
Confidence 456777775544 222 3369999999777 88888877765
No 358
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=29.72 E-value=67 Score=32.60 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 5 NSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 5 ~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++..++++||+++..+..| +..|+.|.+. +++||++.+..
T Consensus 4 ~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~-~~~ItlI~~~~ 43 (424)
T PTZ00318 4 RTARLKKPNVVVLGTGWAG-----AYFVRNLDPK-KYNITVISPRN 43 (424)
T ss_pred cccCCCCCeEEEECCCHHH-----HHHHHHhCcC-CCeEEEEcCCC
Confidence 3444667899999854444 3467888544 79999997654
No 359
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=29.69 E-value=1.2e+02 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=21.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
++|+++..++..| +|++.|.+..|+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 3799999887777 499999775354444443
No 360
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=29.49 E-value=79 Score=32.82 Aligned_cols=47 Identities=11% Similarity=0.244 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecchH
Q 011396 104 SSLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTTTA 150 (487)
Q Consensus 104 ~~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~~~ 150 (487)
+.+.+.++.+++.+++|-+| +|-..+....+|.+++||.+++...+-
T Consensus 65 elIAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm 115 (521)
T PF00920_consen 65 ELIADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPM 115 (521)
T ss_dssp HHHHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE------
T ss_pred HHHHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCC
Confidence 44455566666778999777 788778888899999999998765543
No 361
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.46 E-value=1.7e+02 Score=28.43 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.+.++|.++..++.||+- +.+|+++ |++||.+.+..
T Consensus 180 ~pG~~vgI~GlGGLGh~a--Vq~AKAM----G~rV~vis~~~ 215 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMA--VQYAKAM----GMRVTVISTSS 215 (360)
T ss_pred CCCcEEEEecCcccchHH--HHHHHHh----CcEEEEEeCCc
Confidence 356899999999999984 6777877 99999999764
No 362
>PRK04328 hypothetical protein; Provisional
Probab=29.23 E-value=4.7e+02 Score=24.24 Aligned_cols=38 Identities=13% Similarity=-0.016 Sum_probs=30.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
--+++...|+.|-..=.+.++.+-+++ |+.+.|++.+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee 61 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEE 61 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeC
Confidence 346777788889988888877665577 99999999876
No 363
>PLN02735 carbamoyl-phosphate synthase
Probab=28.92 E-value=3.4e+02 Score=31.54 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCc--cCH----HHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGI--GHL----IPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~--GH~----~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++|+++..|.. |+. +--..++++|.+. |++|..+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~-G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEE-GYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHc-CCEEEEEeCCc
Confidence 468988887753 544 5578899999877 99999887543
No 364
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=28.85 E-value=1.1e+02 Score=25.91 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=48.8
Q ss_pred ccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhc
Q 011396 377 CGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLI 439 (487)
Q Consensus 377 GG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll 439 (487)
|+=-||.|-+-.--|+|+=.-..-+++|...+.+ |+-....+.. ++.++|..++..+-
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRp---Vs~e~ie~~v~~ie 92 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRP---VSSEQIEEAVSHIE 92 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCC---CCHHHHHHHHHHHH
Confidence 4456889998888888888888889999999998 8888888776 99999998887774
No 365
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.81 E-value=4.2e+02 Score=24.78 Aligned_cols=100 Identities=21% Similarity=0.210 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCcccccccccccccccc
Q 011396 297 LNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSH 376 (487)
Q Consensus 297 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~H 376 (487)
+.+..+++++.+.+++..+|...- ..|.......++++ .-+|..+.
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l---------------------~~f~~~~~~~~~~~-Rvlp~~~~------------ 162 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNL---------------------AHFVAADAHSHVLA-RVLPPPDV------------ 162 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccch---------------------HHHhcCcccceEEE-EEcCchHH------------
Confidence 666777787888888877776532 22332222223333 33333222
Q ss_pred ccchhHHHHHhhCCc---eeccccccccchhhHhhhhhccceEEeeecCCCC-cCHHHHHHHHH
Q 011396 377 CGWNSILESIVHGVP---IIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGL-VGREDIANYAK 436 (487)
Q Consensus 377 GG~gt~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~-~~~~~l~~~i~ 436 (487)
+..|.-.|+| +|.+==.+.+..|...+++ +++...+.++..+- -+.+.+..+.+
T Consensus 163 -----~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q-~~id~vItK~SG~~Gg~~~Ki~aA~e 220 (257)
T COG2099 163 -----LAKCEDLGVPPARIIAMRGPFSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEKIEAARE 220 (257)
T ss_pred -----HHHHHhcCCChhhEEEecCCcChHHHHHHHHH-hCCCEEEEccCCcccCcHHHHHHHHH
Confidence 2334555666 3444112678889999999 99999998865322 45666655543
No 366
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.69 E-value=86 Score=26.87 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
..+|+++..|.-| ...++.|.+. ||+||++.++
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~-ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDT-GAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhC-CCEEEEEcCc
Confidence 4578888766544 7788999887 9999999654
No 367
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=28.68 E-value=54 Score=22.90 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=33.1
Q ss_pred eecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 419 KVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 419 ~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
+...+|.++.+++...+..+... ..........+.+-+..+.++...-..++|++
T Consensus 10 D~d~~G~i~~~el~~~~~~~~~~----~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 10 DKDGDGYISKEELRRALKHLGRD----MSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp STTSSSEEEHHHHHHHHHHTTSH----STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred cCCccCCCCHHHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 45557889999999999988753 11333333444434444555554445666654
No 368
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=28.55 E-value=92 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=20.9
Q ss_pred hcCCCceEEEeC-C-CcchHHHHHHH----hCCCeEEEecc
Q 011396 114 AESTRLVALVVD-I-FGSAAFDVANE----FGVPVYIFFTT 148 (487)
Q Consensus 114 ~~~~~pD~vI~D-~-~~~~~~~~A~~----lgIP~v~~~~~ 148 (487)
++++.||++|+- + -...++..|++ .|||++++.-.
T Consensus 56 ~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 56 LEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCC
Confidence 345599987743 2 23344555554 48999986443
No 369
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.22 E-value=5.4e+02 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=33.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~ 50 (487)
+||+++-..+.|++-=..++.+.|.+.. +.+|++++.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~ 40 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEG 40 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHH
Confidence 3799999999999999999999996653 68999999875
No 370
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=28.22 E-value=2.4e+02 Score=29.09 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=20.6
Q ss_pred CCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 116 STRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 116 ~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
..+||++|..... ..+|+++|||+..
T Consensus 402 ~~~pDl~ig~~~~---~~~a~k~gIP~~~ 427 (466)
T TIGR01282 402 KLKPDLVGSGIKE---KYVFQKMGVPFRQ 427 (466)
T ss_pred HhCCCEEEecCCc---cceeeecCCCccc
Confidence 3499999988743 5689999999754
No 371
>CHL00067 rps2 ribosomal protein S2
Probab=28.11 E-value=3.8e+02 Score=24.63 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCceEEE-eCCCcc-hHHHHHHHhCCCeEEEecc
Q 011396 117 TRLVALV-VDIFGS-AAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 117 ~~pD~vI-~D~~~~-~~~~~A~~lgIP~v~~~~~ 148 (487)
..||+|| .|+..- -+..=|..+|||++.+.-+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDT 193 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDT 193 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeC
Confidence 4699766 555333 4566788899999887544
No 372
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=27.85 E-value=4.5e+02 Score=30.52 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGI--GH----LIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~--GH----~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.+++|+++..+.. |+ =+..+.++++|.+. ||+|.++....
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~-G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE-GYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc-CCEEEEEeCCc
Confidence 3567888876642 32 25788999999877 99998887543
No 373
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.70 E-value=68 Score=30.37 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=36.6
Q ss_pred ccccccccccccchhHHHHHhh-CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 367 HGSTGGFLSHCGWNSILESIVH-GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 367 ~~~~~~~I~HGG~gt~~eal~~-GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
.++ ++|+=||-||+..+.+. .+|++.+-. . .+|.-- + ++++++.+++++++++
T Consensus 52 ~~D--~vi~lGGDGT~L~a~~~~~~PilGIN~--------G------~lGFL~---~---~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NAD--VIITIGGDGTILRTLQRAKGPILGINM--------G------GLGFLT---E---IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCC--EEEEEcCcHHHHHHHHHcCCCEEEEEC--------C------CCccCc---c---cCHHHHHHHHHHHHcC
Confidence 455 99999999999999884 456544321 1 112221 2 6789999999999876
No 374
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=27.59 E-value=96 Score=26.87 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=20.2
Q ss_pred cccccccch------hHHHHHhhCCceecccc
Q 011396 372 GFLSHCGWN------SILESIVHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HGG~g------t~~eal~~GvP~l~~P~ 397 (487)
++++|.|-| ++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 788888744 67788999999999874
No 375
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=27.48 E-value=2e+02 Score=29.95 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhc-CCCEEEEEeC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQ-HNFLVTIFIP 48 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r-~GH~Vt~~~~ 48 (487)
++|+++..+++.| +|++.|.+. .|++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 3799999888888 467777543 2788877744
No 376
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.46 E-value=1.3e+02 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCceEEEeCCCcch-------------HH--HHHHHhCCCeEEEecch
Q 011396 108 DALKVLAESTRLVALVVDIFGSA-------------AF--DVANEFGVPVYIFFTTT 149 (487)
Q Consensus 108 ~~l~~~~~~~~pD~vI~D~~~~~-------------~~--~~A~~lgIP~v~~~~~~ 149 (487)
+.+.++++..+||.++....++. +. .++...|||+.-+.|+.
T Consensus 51 ~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~ 107 (164)
T PRK00039 51 DGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 34444445559998876543322 11 37778899988775553
No 377
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=27.43 E-value=99 Score=27.03 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHhcCCCceEEEeCCCcc---hHHHHHHHhCCCeEEE
Q 011396 111 KVLAESTRLVALVVDIFGS---AAFDVANEFGVPVYIF 145 (487)
Q Consensus 111 ~~~~~~~~pD~vI~D~~~~---~~~~~A~~lgIP~v~~ 145 (487)
.+++++.+||+|+...... .++.+|.+||.|+++-
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 84 AALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 3333444899999775443 3668999999998863
No 378
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.38 E-value=3.3e+02 Score=28.57 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.1
Q ss_pred cCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 115 ESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 115 ~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
...+||++|.+.. +..+|+++|||.+.+
T Consensus 434 ~~~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 434 FTEPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred hhcCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 3449999998873 467899999998763
No 379
>PRK09054 phosphogluconate dehydratase; Validated
Probab=27.22 E-value=3.3e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHh-CCCeEEEecch
Q 011396 106 LRDALKVLAESTRLVALV----VDIFGSAAFDVANEF-GVPVYIFFTTT 149 (487)
Q Consensus 106 ~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~l-gIP~v~~~~~~ 149 (487)
+.+.++..+..+.+|-+| +|-..+..+.+|-.+ ++|.|++...+
T Consensus 132 IA~sie~~l~~~~fDg~v~lg~CDKivPG~lMaA~r~g~lP~ifV~gGp 180 (603)
T PRK09054 132 IAMSTAVALSHNMFDAALLLGVCDKIVPGLLIGALSFGHLPAIFVPAGP 180 (603)
T ss_pred HHHHHHHHhhcCCcceEEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 334444455667899766 788778888889999 69998876543
No 380
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=27.22 E-value=6.6e+02 Score=25.31 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=37.6
Q ss_pred cchhHHHHHhhCCceec--cccccc------cchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 378 GWNSILESIVHGVPIIA--WPLYAE------QKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 378 G~gt~~eal~~GvP~l~--~P~~~D------Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
|+.++..++.+|.|+-. ++..+| =-.|+.++.+++--...+ ++.++++.+|.+++.|
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvv-------V~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVV-------VEDDEIAAAILRLFED 316 (457)
T ss_pred CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEE-------eccHHHHHHHHHHHHh
Confidence 56889999999998621 222233 234566666633333333 6889999999999987
No 381
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=27.13 E-value=3.5e+02 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=15.2
Q ss_pred cCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 426 VGREDIANYAKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
.+...++-.|-.+ .| +.++++.+.+++..++
T Consensus 116 ~nAa~~AaqIl~~-~d---~~l~~kl~~~r~~~~~ 146 (156)
T TIGR01162 116 GNAALLAAQILGI-KD---PELAEKLKEYRENQKE 146 (156)
T ss_pred hHHHHHHHHHHcC-CC---HHHHHHHHHHHHHHHH
Confidence 3444444444322 34 5566666666555554
No 382
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=27.10 E-value=4.8e+02 Score=25.88 Aligned_cols=161 Identities=11% Similarity=0.031 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhhcCCCeeecccCCccccccccccccccccc
Q 011396 298 NELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRTKGVGLVVPSWSPQVQVLRHGSTGGFLSHC 377 (487)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~~~pq~~~L~~~~~~~~I~HG 377 (487)
..+...+.....++|-.+.+.. +..++.-.. ...+++.. ..+.+..+.+++=+.-+
T Consensus 114 ~~l~~~i~~~pKPVIAAVnG~A--------------------iGGGleLAL-aCDlrIAs---e~A~Fg~PE~rlGl~P~ 169 (360)
T TIGR03200 114 NDMVSAILGCDKPVICRVNGMR--------------------IGGGQEIGM-AADFTIAQ---DLANFGQAGPKHGSAPI 169 (360)
T ss_pred HHHHHHHHhCCCCEEEEECCEe--------------------eeHHHHHHH-hCCEEEEc---CCCEEeCchhccCCCCC
Confidence 4456677778888887776632 112322111 12233321 23344444444555555
Q ss_pred cchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEee-ecC-------CCCcCHHHHHHHHHHhccCchhHHHHH
Q 011396 378 GWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVK-VNE-------NGLVGREDIANYAKGLIQGEEGKLLRS 449 (487)
Q Consensus 378 G~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~-------~~~~~~~~l~~~i~~ll~~~~~~~~r~ 449 (487)
|.++..-.-..|...-..=...-+...|....+ +|+--.+- ..+ ++....++..+.+.+++.++ .+.-.
T Consensus 170 ~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~-~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~ 246 (360)
T TIGR03200 170 GGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKR-LGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE--FKAGD 246 (360)
T ss_pred ccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHH-cCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC--Ccchh
Confidence 555443333333221000011234667777777 77765542 222 11123344455555566542 23333
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhhc
Q 011396 450 KMRALKDAAANALSPDGSSTKSLAQVAQKWKNLESE 485 (487)
Q Consensus 450 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 485 (487)
.++..++.++......-.-+..|++|+.++.+.+.+
T Consensus 247 ~~~~~k~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 282 (360)
T TIGR03200 247 ELKAGKELIKQGTIDLSLLDEAVEALCAKLLNTFPE 282 (360)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHhchH
Confidence 666666777642112223455777788887776654
No 383
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.06 E-value=78 Score=33.15 Aligned_cols=32 Identities=6% Similarity=0.080 Sum_probs=23.5
Q ss_pred HHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEe
Q 011396 112 VLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFF 146 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~ 146 (487)
+++++.+||+||.+. +...+|+++|||++.++
T Consensus 368 ~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 368 DMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 344556899999987 33456899999987643
No 384
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.84 E-value=1e+02 Score=27.73 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=25.2
Q ss_pred HHHHHhcCCCceEEEeCCCc------chHHHHHHHhCCCeEE
Q 011396 109 ALKVLAESTRLVALVVDIFG------SAAFDVANEFGVPVYI 144 (487)
Q Consensus 109 ~l~~~~~~~~pD~vI~D~~~------~~~~~~A~~lgIP~v~ 144 (487)
.+.+++++.+||+|+.-... -.++.+|.+||.|+++
T Consensus 99 al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 99 ALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 33444444479999976544 4577899999999776
No 385
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=26.73 E-value=3.2e+02 Score=27.84 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++||+++..+.. .+.+++++.+. |++|+.+.+..
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~-G~~vv~~~~~~ 35 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKEL-GIKTVAVHSTA 35 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHc-CCeEEEEcChh
Confidence 468999854333 36777777665 99998887654
No 386
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.57 E-value=57 Score=28.52 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEEecc
Q 011396 103 LSSLRDALKVLAESTRLVALVVDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 103 ~~~~~~~l~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
...++..+.++. ..+.|+||.+.. ....|+++|+|++.+.++
T Consensus 111 ~~e~~~~i~~~~-~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 111 EEEIEAAIKQAK-AEGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHHH-HTT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHHHH-HcCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 445566666553 348999999983 367899999999887664
No 387
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.90 E-value=3.2e+02 Score=26.20 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcC-CCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQH-NFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~-GH~Vt~~~~~~ 50 (487)
||+++-....|++.-..++.++|.++. +.+|++++.+.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~ 39 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEG 39 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChh
Confidence 488888889999999999999997663 68999999876
No 388
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.83 E-value=6.1e+02 Score=24.45 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=26.4
Q ss_pred cEEEEEcCCCcc-----CHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIG-----HLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~G-----H~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+-|++.|+.+.| ...-+..|++.|.++ |.+|.++.++.
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-~~~ivl~G~~~ 217 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-GYQVVLFGSAK 217 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-CCEEEEEEChh
Confidence 456666654333 234588999999876 99998887764
No 389
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=25.67 E-value=1.4e+02 Score=31.29 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecch
Q 011396 104 SSLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 104 ~~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.++..+..+.+|-+| +|-..+..+.+|.+++||.+++.-.+
T Consensus 75 elIAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 75 EIIADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 33444455556677999776 78877888889999999999886543
No 390
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=25.45 E-value=5e+02 Score=25.46 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCC-EEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNF-LVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH-~Vt~~~~~ 49 (487)
..+|+++..|+.| -.+|+.|++. |+ +++++=.+
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~a-Gvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRA-GIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHc-CCCEEEEEcCC
Confidence 5689999988877 6789999887 98 77776444
No 391
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.42 E-value=5.9e+02 Score=25.93 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.1
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhcCCCEEEEE
Q 011396 14 VAMV-PTPGIGHLIPQVELAKRLVHQHNFLVTIF 46 (487)
Q Consensus 14 Il~~-~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~ 46 (487)
|++. +..+.|-+.=.+.|.++|.+| |++|.=+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~r-g~~Vqpf 35 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPF 35 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhc-CCccccc
Confidence 4444 445569999999999999888 9998654
No 392
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=25.37 E-value=3.9e+02 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
+++|+++..+++.| +|++.|.+. |++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~-g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRS-GAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhC-CCeEEEEEC
Confidence 46899999888877 588889665 887777744
No 393
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=25.28 E-value=4.6e+02 Score=22.89 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=24.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
-|-+.+..+.|-....+-+|-.-+-+ |.+|.++--=
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFl 40 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFL 40 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEe
Confidence 47888999999999877777666555 7888888643
No 394
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.26 E-value=5.2e+02 Score=24.45 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=33.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.+++|+...+.|-..=+..|+..+..+ |+.|.+++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~ 113 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 113 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 578888889999999999999999776 99999998765
No 395
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=25.19 E-value=1.7e+02 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred cCCCceEEEeCC-C-cchHHHHHHHhCCCeEEE
Q 011396 115 ESTRLVALVVDI-F-GSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 115 ~~~~pD~vI~D~-~-~~~~~~~A~~lgIP~v~~ 145 (487)
...++|+|++=. - .+.+..+|..+|+|++..
T Consensus 47 ~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 47 KDEGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred ccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 345899998542 2 344667999999998875
No 396
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=25.07 E-value=1.9e+02 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=23.4
Q ss_pred hcCCCceEEEeCC--CcchHHHHHHHhCCCeEEE
Q 011396 114 AESTRLVALVVDI--FGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 114 ~~~~~pD~vI~D~--~~~~~~~~A~~lgIP~v~~ 145 (487)
.+..++|.|++=. -.+.+..+|.++|+|++..
T Consensus 49 ~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 49 YKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred hcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 3444899998542 3455778999999998874
No 397
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.06 E-value=1.2e+02 Score=26.47 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
...+++...+|.|-..=..++|+++.++ |+.|.|+..+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCc
Confidence 4579999999999999999999999887 99999997654
No 398
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=24.99 E-value=94 Score=32.52 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=23.4
Q ss_pred HHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 112 VLAESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
+.+++.+||+||.+. ....+|+++|||++.+
T Consensus 358 ~~i~~~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 358 DAIAALEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHhcCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 344556899999987 3456789999998764
No 399
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.81 E-value=6.5e+02 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=21.3
Q ss_pred CceEEEeCCCcchHHHHHHHhCCCeEEEec
Q 011396 118 RLVALVVDIFGSAAFDVANEFGVPVYIFFT 147 (487)
Q Consensus 118 ~pD~vI~D~~~~~~~~~A~~lgIP~v~~~~ 147 (487)
+-|++|+... ...-+|..+|+|.|.++.
T Consensus 260 ~a~l~Vs~DS--Gp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGVDS--VPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 7899997752 335688889999988764
No 400
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.73 E-value=91 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.7
Q ss_pred cccccccchhHHHHHh-hCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 372 GFLSHCGWNSILESIV-HGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++|+=||-||+..+++ +++|++.+-.. .+|... + ++.+++.+++++++++
T Consensus 44 ~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~---~---~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 44 LIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS---S---YTLEEIDRFLEDLKNW 94 (256)
T ss_pred EEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc---c---cCHHHHHHHHHHHHcC
Confidence 9999999999999987 56676544310 122222 1 5778888888888775
No 401
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=24.64 E-value=3.6e+02 Score=27.49 Aligned_cols=120 Identities=21% Similarity=0.304 Sum_probs=70.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhc-C--CCCceEEeCCCCCCCCCC-Cch
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLES-L--PTSISTIFLPPVSFDDLP-DDV 89 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~~~~-~~~ 89 (487)
|++..-|+.|-+.-++.+|..++.+..-.|.+++-+- ...++... + ..++....+... .+. ..|
T Consensus 199 ii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM---------~~eql~~R~Ls~~s~v~~~kirtg---~l~~~d~ 266 (435)
T COG0305 199 IIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEM---------SEEQLVMRLLSSESGIESSKLRTG---RLSDDEW 266 (435)
T ss_pred EEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccC---------CHHHHHHHhhccccccchhccccc---cccHHHH
Confidence 7788899999999999999999877457799998774 22222221 1 122222222111 111 112
Q ss_pred hhHHHHHHHHH-----------HhHHHHHHHHHHHhcCCCceEEEeCCCcc---h----------------HHHHHHHhC
Q 011396 90 RMETRITLTLA-----------RSLSSLRDALKVLAESTRLVALVVDIFGS---A----------------AFDVANEFG 139 (487)
Q Consensus 90 ~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~pD~vI~D~~~~---~----------------~~~~A~~lg 139 (487)
.........+. .....++...+.+-.++..++|+.|++-. . .-.+|++++
T Consensus 267 ~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~ 346 (435)
T COG0305 267 ERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKSENRKQEVSEISRSLKGLAKELG 346 (435)
T ss_pred HHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccchhHHHHHHHHHHHHHHHHHhcC
Confidence 22211111111 13456666677776677889999885321 1 125899999
Q ss_pred CCeEEE
Q 011396 140 VPVYIF 145 (487)
Q Consensus 140 IP~v~~ 145 (487)
||++.+
T Consensus 347 vpvial 352 (435)
T COG0305 347 VPVIAL 352 (435)
T ss_pred CcEEeh
Confidence 998874
No 402
>PHA02754 hypothetical protein; Provisional
Probab=24.63 E-value=1e+02 Score=21.23 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.2
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHh
Q 011396 435 AKGLIQGEEGKLLRSKMRALKDAAAN 460 (487)
Q Consensus 435 i~~ll~~~~~~~~r~~a~~l~~~~~~ 460 (487)
+.+++.+ ..|++.++++.+.+.+
T Consensus 7 i~k~i~e---K~Fke~MRelkD~LSe 29 (67)
T PHA02754 7 IPKAIME---KDFKEAMRELKDILSE 29 (67)
T ss_pred HHHHHHH---hHHHHHHHHHHHHHhh
Confidence 4445567 7899999999999875
No 403
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=24.61 E-value=69 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=21.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|.++. +.|++- -.|.++..+| ||+||-++-..
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhC-CCeeEEEEeCh
Confidence 354443 344433 2567777788 99999998543
No 404
>PRK06270 homoserine dehydrogenase; Provisional
Probab=24.53 E-value=2.3e+02 Score=27.78 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=34.8
Q ss_pred ccccccccccccccc------ccc---chhHHHHHhhCCceec---cccccccchhhHhhhhhccceEEee
Q 011396 361 QVQVLRHGSTGGFLS------HCG---WNSILESIVHGVPIIA---WPLYAEQKMNAVLLIDDLKVSFRVK 419 (487)
Q Consensus 361 q~~~L~~~~~~~~I~------HGG---~gt~~eal~~GvP~l~---~P~~~DQ~~na~~v~~~~G~G~~l~ 419 (487)
..++|..++++++|- |+| .--+.++|.+|+++|+ -|+...-..-.....+ .|+.+...
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 355665555556665 543 4456899999999999 4765422222233334 67766654
No 405
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.45 E-value=4.8e+02 Score=27.81 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=22.2
Q ss_pred cccccccccch------hHHHHHhhCCceeccc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34888898865 6778899999999996
No 406
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=24.43 E-value=1.3e+02 Score=28.97 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-|+|..-||-|-..-..++|-.++++ |++|.+++++.
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dp 39 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDP 39 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESST
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCC
Confidence 35666678889999999999999887 99999999886
No 407
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=7e+02 Score=24.67 Aligned_cols=126 Identities=15% Similarity=0.030 Sum_probs=74.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCch
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDV 89 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (487)
++.|++++..|--||--.|--=|..|++. |.+|.++.--. .. ....+.. .++|+++.++...+-+..
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~----s~---p~e~l~~--hprI~ih~m~~l~~~~~~--- 77 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVE----SI---PLEELLN--HPRIRIHGMPNLPFLQGG--- 77 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecC----CC---ChHHHhc--CCceEEEeCCCCcccCCC---
Confidence 46789999999999999999999999887 99999998543 11 1233333 457999999876532211
Q ss_pred hhHHHHH-HHHHHhHHHHHHHHHHHhcCCCceEEEeCC-CcchHHHHH----HHhCCCeEEEecchHHH
Q 011396 90 RMETRIT-LTLARSLSSLRDALKVLAESTRLVALVVDI-FGSAAFDVA----NEFGVPVYIFFTTTAMV 152 (487)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~pD~vI~D~-~~~~~~~~A----~~lgIP~v~~~~~~~~~ 152 (487)
.....+. ..+-..+. ++-.++--.++|.|+... -+.....+| ...|...++=|+...++
T Consensus 78 p~~~~l~lKvf~Qfl~----Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFLS----LLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred chhhhhHHHHHHHHHH----HHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1111111 11111111 222222234889887663 333333333 34577888888876554
No 408
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.11 E-value=1e+02 Score=31.31 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=23.6
Q ss_pred HHhcCCCceEEEeCCCcchHHHHHHHhCCCeEEE
Q 011396 112 VLAESTRLVALVVDIFGSAAFDVANEFGVPVYIF 145 (487)
Q Consensus 112 ~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~~ 145 (487)
+++++.+||+||.+... ..+|+++|+|++.+
T Consensus 365 ~~i~~~~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 365 SLAKEEPVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred HHhhccCCCEEEECchh---HHHHHhcCCCEEEe
Confidence 34455689999999843 57888899998753
No 409
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=24.09 E-value=1.4e+02 Score=31.50 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecch
Q 011396 104 SSLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 104 ~~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.++.++..+.+|-+| +|-..+..+.+|.+++||.+++.-.+
T Consensus 106 elIAd~iE~~~~a~~~Dg~V~i~gCDK~~PG~lMaaarlniP~i~v~GG~ 155 (596)
T PRK13017 106 NLAYLGLVEILYGYPLDGVVLTTGCDKTTPACLMAAATVDLPAIVLSGGP 155 (596)
T ss_pred HHHHHHHHHHHhcCCcceEEEeccCCCccHHHHHHHHhcCCCEEEEeCCC
Confidence 33445556666777999776 78877888889999999999886553
No 410
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=24.09 E-value=98 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=22.1
Q ss_pred CceEEEeCCCc--chHHHHHHHhCCCeEEEecch
Q 011396 118 RLVALVVDIFG--SAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 118 ~pD~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+||+||..... .....-....+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 99999988766 344556667899998876553
No 411
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.08 E-value=1.2e+02 Score=29.13 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.3
Q ss_pred cccccccchhHHHHH----hhCCceecccc
Q 011396 372 GFLSHCGWNSILESI----VHGVPIIAWPL 397 (487)
Q Consensus 372 ~~I~HGG~gt~~eal----~~GvP~l~~P~ 397 (487)
++|--||=||++|++ ..++|+-++|.
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 888999999999987 34789999995
No 412
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.01 E-value=6.6e+02 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCc--cC----HHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGI--GH----LIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~--GH----~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
+++|+++..+.. |+ =+..++++++|.+. ||+|.++...
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~-G~~vI~v~~n 597 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL-GYETIMINYN 597 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHhC-CCEEEEEecC
Confidence 457888886653 44 25678999999877 9999888654
No 413
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=24.00 E-value=64 Score=29.97 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 26 IPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 26 ~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.-.-.|+++|+++ ||+|+++.|..
T Consensus 20 dv~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHHHhc-CCeEEEEEccc
Confidence 4466789999887 99999999864
No 414
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.94 E-value=4.7e+02 Score=26.37 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++++++..+ .-.+++++.|.+- |-++..+++..
T Consensus 274 Gkrv~i~gd~-----~~~~~l~~~L~el-Gm~~v~~~t~~ 307 (407)
T TIGR01279 274 GKKIFFFGDN-----LLELPLARFLKRC-GMEVVECGTPY 307 (407)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHC-CCEEEEecCCC
Confidence 4577776532 4556778888774 99988887764
No 415
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=23.78 E-value=1.5e+02 Score=31.14 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecc
Q 011396 105 SLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 105 ~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
.+.+.++.+++.+.+|-+| +|-..+..+.+|.+++||.|++.-.
T Consensus 96 liA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gG 143 (552)
T PRK00911 96 VIADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGG 143 (552)
T ss_pred HHHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCC
Confidence 3445555666677999776 7887788888999999999988654
No 416
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.76 E-value=1.5e+02 Score=28.47 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
+.+|.|..=||-|-..-...||-.|++. |++|.++=.+
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~la~~-g~kVLliD~D 41 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCD 41 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 4466677777889999999999999887 9999998443
No 417
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=23.46 E-value=5.9e+02 Score=23.47 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 15 AMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 15 l~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++.+=||.|-..-.+.||.+|+++ |-+|+++=.+.
T Consensus 6 f~s~KGGaGKTT~~~~LAs~la~~-G~~V~lIDaDp 40 (231)
T PF07015_consen 6 FASSKGGAGKTTAAMALASELAAR-GARVALIDADP 40 (231)
T ss_pred EecCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 444457789999999999999888 99999998776
No 418
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=23.42 E-value=2.2e+02 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++-..==+|++--.-+||+.|++++|++|++.+.+.
T Consensus 3 IFC~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 3 IFCRVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred eeEEeccCCcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 4444555589999999999999988899999999875
No 419
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=23.39 E-value=1.6e+02 Score=31.12 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecch
Q 011396 104 SSLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 104 ~~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
+.+.+.++..+..+.+|-+| +|-..+....+|.+++||.+++...+
T Consensus 97 elIAdsiE~~~~a~~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGp 146 (571)
T PRK06131 97 NLAAMDVEEMIRGYPIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGP 146 (571)
T ss_pred HHHHHHHHHHHhcCCcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 33445555666677999776 78878888889999999999887543
No 420
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.35 E-value=5.9e+02 Score=26.28 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEeCCccccccccccccCCCCCCCCCCchhHHHhh---cCCCeeecccCCccccccccc
Q 011396 293 SPEQLNELALGLEMSGQRFLWVVRSPHERAANATYFGIQSMKDPFDFLPKGFLDRT---KGVGLVVPSWSPQVQVLRHGS 369 (487)
Q Consensus 293 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~~~~~~pq~~~L~~~~ 369 (487)
...++.++-.|+...+.--||+-..+.. ++.--.+..... +...++..++=| -++|.+-+
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdv----------------l~gkkqg~lt~~~~~~r~~ll~edfnp-isll~~~d 227 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDV----------------LCGKKQGYLTQLSQQHRVHLLAEDFNP-ISLLQNVD 227 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCch----------------hcCcccchhhhhccCceEEEecccCCh-HHHHHhcc
Confidence 3466778889999998888998655421 111111111111 111233344444 34454433
Q ss_pred -cccccccccchhHHHHHhhCCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHH
Q 011396 370 -TGGFLSHCGWNSILESIVHGVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLR 448 (487)
Q Consensus 370 -~~~~I~HGG~gt~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r 448 (487)
|=++-+|.| .|||..|+|.++.+.. -. .|.|+.-++-+ .+...-.+.+. +-|-
T Consensus 228 kvy~~ts~mg----feall~~~~~~~fg~p----------~y-agwgltddrl~---~~~r~akrsl~--------qlfy 281 (671)
T COG3563 228 KVYCVTSQMG----FEALLCGKPLTTFGLP----------WY-AGWGLTDDRLE---QTQRRAKRSLL--------QLFY 281 (671)
T ss_pred eeEEeecccc----HHHHhcCCceeeecch----------hh-cccCcchhHHH---HHHhhhhhhHH--------HHHH
Confidence 335556666 5999999999887643 23 56666554433 23322223232 3344
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 011396 449 SKMRALKDAAANALSPDGSSTKSLAQVAQ 477 (487)
Q Consensus 449 ~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 477 (487)
++--..++-+....++.|+..+.++.|+.
T Consensus 282 aay~~y~ry~np~~~~~~~lfd~id~lat 310 (671)
T COG3563 282 AAYLQYSRYLNPNTGEAGSLFDVIDYLAT 310 (671)
T ss_pred HHHHHHHHhcCCCccccchHHHHHHHHHH
Confidence 44555666666656666776666666654
No 421
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=23.33 E-value=57 Score=30.35 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.0
Q ss_pred ccccccccchhHHHHHhh----CCceeccc
Q 011396 371 GGFLSHCGWNSILESIVH----GVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HGG~gt~~eal~~----GvP~l~~P 396 (487)
+++|+-||-||+..+++. ++|++.+-
T Consensus 27 Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 27 DVIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CEEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 399999999999988775 57776554
No 422
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.11 E-value=1.6e+02 Score=28.96 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCc--cCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGI--GHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~--GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++||.+++.|+. |=-+-..++.+.+..+ |.+|.-+-...
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~-g~eV~Gi~~Gy 42 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE-GLEVFGIYNGY 42 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc-CCEEEEEecch
Confidence 568999998875 7777889999999887 99998876553
No 423
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.05 E-value=1.3e+02 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.0
Q ss_pred cccccccch------hHHHHHhhCCceeccc
Q 011396 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+++.|.|-| .+.+|...++|||++.
T Consensus 71 v~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 71 VCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 778788855 6789999999999985
No 424
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=23.00 E-value=3.5e+02 Score=23.19 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHHHHHHHhH
Q 011396 24 HLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRITLTLARSL 103 (487)
Q Consensus 24 H~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
+.--...|+++|-+| |+.|+.+.+.. ..-...+..++.+....+.-.. ..+.
T Consensus 18 D~~f~~~LaRa~e~R-Gf~v~~a~~~~---------eal~~art~~PayAvvDlkL~~----gsGL-------------- 69 (182)
T COG4567 18 DTPFLRTLARAMERR-GFAVVTAESVE---------EALAAARTAPPAYAVVDLKLGD----GSGL-------------- 69 (182)
T ss_pred ChHHHHHHHHHHhcc-CceeEeeccHH---------HHHHHHhcCCCceEEEEeeecC----CCch--------------
Confidence 444566899999776 99999987654 2223344445556555554322 1111
Q ss_pred HHHHHHHHHHhcCCCce---EEEeCCCcchHHHHHHHhCCCe
Q 011396 104 SSLRDALKVLAESTRLV---ALVVDIFGSAAFDVANEFGVPV 142 (487)
Q Consensus 104 ~~~~~~l~~~~~~~~pD---~vI~D~~~~~~~~~A~~lgIP~ 142 (487)
.+.+.|++ .++| +|++.+-.++.+.-|-++|.--
T Consensus 70 -~~i~~lr~----~~~d~rivvLTGy~sIATAV~AvKlGA~~ 106 (182)
T COG4567 70 -AVIEALRE----RRADMRIVVLTGYASIATAVEAVKLGACD 106 (182)
T ss_pred -HHHHHHHh----cCCcceEEEEecchHHHHHHHHHHhhhhh
Confidence 11122222 2565 4556676677777788888653
No 425
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=22.86 E-value=1.5e+02 Score=31.31 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecc
Q 011396 105 SLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 105 ~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~ 148 (487)
.+.+.++.+++.+.+|-+| +|-..+..+.+|.+++||.|++.-.
T Consensus 102 lIAdsiE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsI~v~GG 149 (577)
T PRK13016 102 LLAMETEELIRSHPVDGAVLMGGCDKTTPGLVMGAISMGLPMIYLPAG 149 (577)
T ss_pred HHHHHHHHHHhcCCccceEEeccCCCCcHHHHHHHHhcCCCEEEEecC
Confidence 3344555556677999776 7887788888999999999988654
No 426
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.82 E-value=6.7e+02 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCEEEEEeCC
Q 011396 29 VELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 29 l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
-+|...|.+. ||+||+++-.
T Consensus 12 ~~L~~~L~~~-gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKG-GHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEcC
Confidence 3567788776 9999999944
No 427
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.76 E-value=1.3e+02 Score=28.35 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=34.7
Q ss_pred cccccccchhHHHHHhh-----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 372 GFLSHCGWNSILESIVH-----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++|+=||-||+..+++. .+|++.+-.. . .+|.. .+ ++.+++.+++++++++
T Consensus 42 ~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL---~~---~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 42 IIVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY---CD---FHIDDLDKMIQAITKE 97 (264)
T ss_pred EEEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc---cc---CCHHHHHHHHHHHHcC
Confidence 99999999999999885 4555443320 0 12222 12 6778899999988876
No 428
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=22.68 E-value=1.4e+02 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
..|.|+.=||-|-..=...||..|+++ |++|.++=-+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~-G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEM-GKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence 357777778889999999999999887 9999988544
No 429
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=22.64 E-value=95 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=26.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++.-.|+.|-. =...+.+.|.++ |++|.++.++.
T Consensus 2 illgvtGsiaa~-ka~~lir~L~~~-g~~V~vv~T~~ 36 (181)
T TIGR00421 2 IVVAMTGASGVI-YGIRLLEVLKEA-GVEVHLVISDW 36 (181)
T ss_pred EEEEEECHHHHH-HHHHHHHHHHHC-CCEEEEEECcc
Confidence 444444555544 458999999887 99999999986
No 430
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=22.64 E-value=2.6e+02 Score=24.81 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=18.9
Q ss_pred EEEEEcCCCcc--CHHHHHHHHHHHHh
Q 011396 13 HVAMVPTPGIG--HLIPQVELAKRLVH 37 (487)
Q Consensus 13 ~Il~~~~~~~G--H~~P~l~LA~~L~~ 37 (487)
+|++..|+-++ ..||.-.++++|.+
T Consensus 2 ~vLvTGF~PF~~~~~NpS~~~v~~L~~ 28 (194)
T cd00501 2 KVLVTGFGPFGGEPVNPSWEAVKELPK 28 (194)
T ss_pred EEEEEecCCCCCCCCChHHHHHHhccc
Confidence 57777766654 46999999999943
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=22.63 E-value=90 Score=28.81 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVH 37 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~ 37 (487)
++|+++...|+.|-....+.||++|.-
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 689999999999999999999999953
No 432
>PRK12743 oxidoreductase; Provisional
Probab=22.60 E-value=4.9e+02 Score=23.77 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=21.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
.++++.++ |.+- ..+|+.|+++ |++|.++..
T Consensus 4 ~vlItGas-~giG--~~~a~~l~~~-G~~V~~~~~ 34 (256)
T PRK12743 4 VAIVTASD-SGIG--KACALLLAQQ-GFDIGITWH 34 (256)
T ss_pred EEEEECCC-chHH--HHHHHHHHHC-CCEEEEEeC
Confidence 45555443 3333 6799999887 999987754
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=22.60 E-value=1.9e+02 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=27.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
+++...++.|-..-...||..|++. |++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR-GKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEC
Confidence 5666677889999999999999886 99998764
No 434
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=22.58 E-value=1.1e+02 Score=31.56 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=30.4
Q ss_pred CcccCCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 1 METQNSKQIPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 1 ~~~~~~~~~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
|.+++ .+.++++|+++..|..| |..|++|.++ |++|+++=..
T Consensus 1 ~~~~~-~~~~~~~VaIIGAG~aG-----L~aA~~l~~~-G~~v~vfE~~ 42 (461)
T PLN02172 1 MAPAQ-NPINSQHVAVIGAGAAG-----LVAARELRRE-GHTVVVFERE 42 (461)
T ss_pred CCCcc-cCCCCCCEEEECCcHHH-----HHHHHHHHhc-CCeEEEEecC
Confidence 55553 33456789999877655 6678999787 9999998643
No 435
>PRK09354 recA recombinase A; Provisional
Probab=22.56 E-value=3.9e+02 Score=26.38 Aligned_cols=36 Identities=6% Similarity=-0.063 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+.++..++.|-.+=.+.++...+++ |-.+.|+.++.
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~ 98 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEH 98 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCcc
Confidence 4566677889999999998888777 99999998876
No 436
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=22.54 E-value=5.8e+02 Score=24.27 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++|+++..|..|. .+|+.|.++ ||.|.++.-+.
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~-g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEA-GLVVRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHc-CCeEEEEeecC
Confidence 45789998888886 478999777 99999888766
No 437
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.49 E-value=1.3e+02 Score=30.24 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 9 IPRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 9 ~~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.+++||++.-.|+. ..+=...+.+.|.+. |++|.++.++.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~-g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKA-GADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 34567887776655 566889999999877 99999999886
No 438
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=22.47 E-value=2.5e+02 Score=25.71 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEeCCCc--------------ch--------HHHHHHHhCCCeEEEecc
Q 011396 103 LSSLRDALKVLAESTRLVALVVDIFG--------------SA--------AFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 103 ~~~~~~~l~~~~~~~~pD~vI~D~~~--------------~~--------~~~~A~~lgIP~v~~~~~ 148 (487)
+..+++.+..-+.+.+||+||+..-+ +. ....++.+|||++.+.+.
T Consensus 233 Lrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSG 300 (324)
T KOG1344|consen 233 LRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSG 300 (324)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecC
Confidence 34444444444456699999975321 11 124678899998876553
No 439
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=22.45 E-value=1.5e+02 Score=31.43 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=27.3
Q ss_pred eCCCcchHHHHHHHhCCCeEEEecchHHHHHHHhhc
Q 011396 124 VDIFGSAAFDVANEFGVPVYIFFTTTAMVLSLIFHL 159 (487)
Q Consensus 124 ~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 159 (487)
...++..+...+++..+++.++++.+++.+.-+...
T Consensus 150 HEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~~ 185 (633)
T PF05693_consen 150 HEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLAA 185 (633)
T ss_dssp ESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHTT
T ss_pred chHhHhHHHHHHhccCCCeeEEEEecccchhhHhhc
Confidence 556666788899999999999999999987766543
No 440
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.43 E-value=1.6e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=23.8
Q ss_pred CCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 20 PGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 20 ~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-..-.+.-.+=+...|.++ |++||+++++.
T Consensus 13 eiP~qissaiYls~klkkk-gf~v~VaateA 42 (148)
T COG4081 13 EIPPQISSAIYLSHKLKKK-GFDVTVAATEA 42 (148)
T ss_pred CCCccchHHHHHHHHhhcc-CccEEEecCHh
Confidence 3445666677888899777 99999999886
No 441
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=22.42 E-value=1.3e+02 Score=28.05 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
.|.+..=||-|-..-...||..|+++ |++|.++=-+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~-G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKR-GKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 47777778899999999999999887 9999887443
No 442
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.37 E-value=6.9e+02 Score=23.85 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=47.1
Q ss_pred cccccccchhHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHH
Q 011396 372 GFLSHCGWNSILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRS 449 (487)
Q Consensus 372 ~~I~HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~ 449 (487)
+.=.+.|.+.+..|+..|.....+-.+. +..+-+..+.+ . -+.+..+ -|.++|.+.+.++-. .-|-+
T Consensus 197 LLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q-~--~v~I~~~----dt~~~L~~r~~~~E~----~~~~~ 265 (286)
T PRK13011 197 FLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ-D--VERVDHA----YSPEDLVAKGRDVEC----LTLAR 265 (286)
T ss_pred cCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE-E--EEEcCCC----CCHHHHHHHHHHHHH----HHHHH
Confidence 4444678999999999999987666553 44445544444 2 2333343 489999998887543 45665
Q ss_pred HHHHHH
Q 011396 450 KMRALK 455 (487)
Q Consensus 450 ~a~~l~ 455 (487)
..+.+.
T Consensus 266 ai~~~~ 271 (286)
T PRK13011 266 AVKAHI 271 (286)
T ss_pred HHHHHH
Confidence 555554
No 443
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=22.33 E-value=1.7e+02 Score=31.08 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCceEEE----eCCCcchHHHHHHHhCCCeEEEecch
Q 011396 105 SLRDALKVLAESTRLVALV----VDIFGSAAFDVANEFGVPVYIFFTTT 149 (487)
Q Consensus 105 ~~~~~l~~~~~~~~pD~vI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 149 (487)
.+.+.++..+..+.+|-+| +|-..+..+.+|.+++||.+++...+
T Consensus 98 lIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 98 LIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 3445555666677999776 78877888889999999999886543
No 444
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=22.29 E-value=1.5e+02 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=32.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+|++..=||-|-..-.+.||..|+++ |++|.++=-+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 48888899999999999999999887 99998886443
No 445
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=6.4e+02 Score=23.49 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLV 36 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~ 36 (487)
.++.+++..|..|-+.-+..||+.|.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhh
Confidence 35677888888888888888888884
No 446
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=22.11 E-value=1.2e+02 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+++|+++..|+.|- .+|..|++. ||+|+++....
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeCC
Confidence 45899998888874 467888777 99999997643
No 447
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.10 E-value=7e+02 Score=23.85 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=45.7
Q ss_pred cccchhHHHHHhhCCceecccccc--ccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccCchhHHHHHHHHH
Q 011396 376 HCGWNSILESIVHGVPIIAWPLYA--EQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQGEEGKLLRSKMRA 453 (487)
Q Consensus 376 HGG~gt~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~ 453 (487)
..|.+....++..|+....+-.+. +..+.+..+.+ .- +.+..+ -|.++|.+.+.++.. .-|-+..+.
T Consensus 205 f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q-~~--v~V~~~----dt~e~L~~r~~~~E~----~~l~~ai~~ 273 (289)
T PRK13010 205 FKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQ-DV--ERVDHS----YSPEDLVAKGRDVEC----LTLARAVKA 273 (289)
T ss_pred CCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEE-EE--EEcCCC----CCHHHHHHHHHHHHH----HHHHHHHHH
Confidence 468899999999999987776553 55566666665 32 233333 488999888887653 345555554
Q ss_pred HH
Q 011396 454 LK 455 (487)
Q Consensus 454 l~ 455 (487)
+.
T Consensus 274 ~~ 275 (289)
T PRK13010 274 FI 275 (289)
T ss_pred HH
Confidence 43
No 448
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.00 E-value=5.4e+02 Score=23.02 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
+++|++. |+.|++ -..|++.|.++ ||+|+.++..
T Consensus 6 ~~~vlIt--Gasg~i--G~~l~~~l~~~-g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVT--GAARGL--GRAIALRLARA-GADVVVHYRS 39 (249)
T ss_pred CCEEEEe--CCCchH--HHHHHHHHHHC-CCeEEEEeCC
Confidence 3456653 455654 46788889887 9998776544
No 449
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=21.88 E-value=1.2e+02 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.-.|+. ..+-...+.+.|.++ |++|.++.++.
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~-g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKL-GYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHC-CCEEEEEEChH
Confidence 5666665544 556777999999877 99999999886
No 450
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=21.86 E-value=6.9e+02 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.5
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHhcCCCEEEEEeC
Q 011396 13 HVAMVPTPG-IGHLIPQVELAKRLVHQHNFLVTIFIP 48 (487)
Q Consensus 13 ~Il~~~~~~-~GH~~P~l~LA~~L~~r~GH~Vt~~~~ 48 (487)
+|++....+ .|-+.-.+.|++.|.++ |.+|..+=+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~-g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDA-GYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHC-CCeeEEEee
Confidence 566666554 59999999999999887 999876654
No 451
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=21.85 E-value=2.2e+02 Score=28.15 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=54.8
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCCCCCchhhhhhhcCCCCceEEeCCCCCCCCCCCchhhHHHHHHHHHHh
Q 011396 23 GHLIPQVELAKRLVHQHNFLVTIFIPTIDDGTGSSMEPQRQVLESLPTSISTIFLPPVSFDDLPDDVRMETRITLTLARS 102 (487)
Q Consensus 23 GH~~P~l~LA~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
.|++ .|.+.|.+. ||.|.+++... ......+-..+++....+|...... ... ...+...
T Consensus 19 shiy---~lSq~li~l-ghkVvvithay---------g~r~girylt~glkVyylp~~v~~n-~tT-------~ptv~~~ 77 (426)
T KOG1111|consen 19 SHIY---ALSQCLIRL-GHKVVVITHAY---------GNRVGIRYLTNGLKVYYLPAVVGYN-QTT-------FPTVFSD 77 (426)
T ss_pred hhHH---Hhhcchhhc-CCeEEEEeccc---------cCccceeeecCCceEEEEeeeeeec-ccc-------hhhhhcc
Confidence 5655 688999988 99999998775 2222222233445555555432110 000 1111222
Q ss_pred HHHHHHHHHHHhcCCCceEEEeCCCc----chHHHHHHHhCCCeEEEecc
Q 011396 103 LSSLRDALKVLAESTRLVALVVDIFG----SAAFDVANEFGVPVYIFFTT 148 (487)
Q Consensus 103 ~~~~~~~l~~~~~~~~pD~vI~D~~~----~~~~~~A~~lgIP~v~~~~~ 148 (487)
++.++..+.+ .+..+|.....+ ..+..-|+.+|...|+..++
T Consensus 78 ~Pllr~i~lr----E~I~ivhghs~fS~lahe~l~hartMGlktVfTdHS 123 (426)
T KOG1111|consen 78 FPLLRPILLR----ERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHS 123 (426)
T ss_pred Ccccchhhhh----hceEEEecCChHHHHHHHHHHHHHhcCceEEEeccc
Confidence 4555544443 267776655322 23557899999877664443
No 452
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.75 E-value=1.2e+02 Score=30.86 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=23.2
Q ss_pred HHHhcCCCceEEEeCCCcchHHHHHHHhCCCeEE
Q 011396 111 KVLAESTRLVALVVDIFGSAAFDVANEFGVPVYI 144 (487)
Q Consensus 111 ~~~~~~~~pD~vI~D~~~~~~~~~A~~lgIP~v~ 144 (487)
.+++++.+||+||.... ...+|+++|||++.
T Consensus 366 ~~~i~~~~~dliig~s~---~k~~A~~l~ip~ir 396 (432)
T TIGR01285 366 EDLACAAGADLLITNSH---GRALAQRLALPLVR 396 (432)
T ss_pred HHHHhhcCCCEEEECcc---hHHHHHHcCCCEEE
Confidence 34445568999998773 36789999999875
No 453
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=21.66 E-value=1.9e+02 Score=24.08 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=28.4
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 15 AMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 15 l~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
.++..+..--++|.+-++...+.. |++|+++.+-
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~-G~EV~VF~Tf 40 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAM-GYEVTVFFTF 40 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeH
Confidence 444557788899999999999887 9999999883
No 454
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=21.63 E-value=4.9e+02 Score=27.07 Aligned_cols=109 Identities=9% Similarity=0.027 Sum_probs=70.7
Q ss_pred eecccCCccc---cccccccccccc--cccchhH-HHHHhhCC----ceeccccccccchhhHhhhhhccceEEeeecCC
Q 011396 354 VVPSWSPQVQ---VLRHGSTGGFLS--HCGWNSI-LESIVHGV----PIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNEN 423 (487)
Q Consensus 354 ~~~~~~pq~~---~L~~~~~~~~I~--HGG~gt~-~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 423 (487)
.+.+.+|+.. ++.-+|+ ++|| .-|.|-+ .|.++++. |+|+--+.+ ..+. +.-++.+++
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~~-l~~AllVNP--- 432 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAVE-LKGALLTNP--- 432 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chhh-cCCCEEECC---
Confidence 4556777644 5555663 2332 4588844 59999987 444333321 1144 555777776
Q ss_pred CCcCHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 011396 424 GLVGREDIANYAKGLIQGEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNL 482 (487)
Q Consensus 424 ~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 482 (487)
.+.++++++|.+.|+.+. ++-+++.+++.+.++. -.+..=.+.++++|+..
T Consensus 433 --~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 --YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 589999999999999743 4557777777777774 24556678888877654
No 455
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=21.61 E-value=1.7e+02 Score=28.12 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCccCHH--------HHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLI--------PQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~--------P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
..+|++++.+-..|.. -.+.||+.|.+. |.+|++++.+.
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~l-G~~~~ivtd~~ 86 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQAL-GKEVVIVTDER 86 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHc-CCeEEEEECHH
Confidence 3467777644433332 278999999886 99999999876
No 456
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.54 E-value=4.7e+02 Score=27.79 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=21.8
Q ss_pred ccccccccch------hHHHHHhhCCceeccc
Q 011396 371 GGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 371 ~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+++++|.|-| .+++|...++|+|++.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 3888888866 5679999999999995
No 457
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.46 E-value=7e+02 Score=24.28 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=21.1
Q ss_pred CCceEEEeCCCcch----HHHHHHHhCCCeEEEec
Q 011396 117 TRLVALVVDIFGSA----AFDVANEFGVPVYIFFT 147 (487)
Q Consensus 117 ~~pD~vI~D~~~~~----~~~~A~~lgIP~v~~~~ 147 (487)
+++|.||..+.... ...-|...|||+|++..
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 48999887654422 33457778999988643
No 458
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=21.44 E-value=43 Score=31.83 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=32.1
Q ss_pred ccchhHH--HHHhhCCceeccccccccchhhHh-hhhhccce
Q 011396 377 CGWNSIL--ESIVHGVPIIAWPLYAEQKMNAVL-LIDDLKVS 415 (487)
Q Consensus 377 GG~gt~~--eal~~GvP~l~~P~~~DQ~~na~~-v~~~~G~G 415 (487)
||||+++ -|-.+|+-++.+-++..|..++.. +.+ .|+-
T Consensus 81 CGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~-~gl~ 121 (283)
T COG2230 81 CGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA-RGLE 121 (283)
T ss_pred CChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH-cCCC
Confidence 7888654 567789999999999999999996 666 8998
No 459
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.44 E-value=4.4e+02 Score=21.21 Aligned_cols=37 Identities=16% Similarity=0.001 Sum_probs=32.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
||++.+.++-.|..-..-++..|... |++|.+..+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 58899999999999999999988776 99999998654
No 460
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.43 E-value=1.5e+02 Score=29.24 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 14 VAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 14 Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
|++-..==+|++--.-+||++|++.+|++|++.+.+.
T Consensus 3 IFC~VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 3 IFCRVVDNYGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred eEEEeecCCcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 4555555689999999999999986799999999875
No 461
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.37 E-value=5.7e+02 Score=29.64 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=29.7
Q ss_pred CcEEEEEcCCC--ccC----HHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPG--IGH----LIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~--~GH----~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-++|+++..+. .|+ =+....++++|.+. ||+|.++.+..
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~-G~~vi~v~~np 50 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE-GYRVILVNSNP 50 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHc-CCEEEEEecch
Confidence 35788888775 354 36788999999877 99999987654
No 462
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.16 E-value=1.1e+02 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
|++|.|+..|..| ..+|+.|.++ ||+|+.+-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~-g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKA-GYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHT-TTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhc-CCeEEeec
Confidence 4578888888777 4789999887 99998875
No 463
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.16 E-value=6.5e+02 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCceEEEeCCCcch----HHHHHHHhCCCeEEEe
Q 011396 117 TRLVALVVDIFGSA----AFDVANEFGVPVYIFF 146 (487)
Q Consensus 117 ~~pD~vI~D~~~~~----~~~~A~~lgIP~v~~~ 146 (487)
.++|.||....... ....+...|||+|++.
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEec
Confidence 38998886543322 2245567899998864
No 464
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.07 E-value=1.5e+02 Score=27.89 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=24.6
Q ss_pred cEEEEEecCCCCCC-HHHHHHHHHHHHh--cCCceEEEEeCC
Q 011396 280 SVLFVCFGSGGTLS-PEQLNELALGLEM--SGQRFLWVVRSP 318 (487)
Q Consensus 280 ~~v~vs~Gs~~~~~-~~~~~~~~~al~~--~~~~~i~~~~~~ 318 (487)
-+|.|||||..... ..-+..+.+.++. .+.+|-|++.++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 47999999975543 3367777777766 478899998875
No 465
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=21.03 E-value=1.5e+02 Score=27.64 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEe
Q 011396 13 HVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 13 ~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~ 47 (487)
+|.+..=||-|-..-.+.||..|+++ |++|.++=
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD 35 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIG 35 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 47777778889999999999999887 99998884
No 466
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=21.01 E-value=2e+02 Score=24.72 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHhcCCCceEEEeCCCcch---------------HHHHHHHhCCCeEEEecchH
Q 011396 98 TLARSLSSLRDALKVLAESTRLVALVVDIFGSA---------------AFDVANEFGVPVYIFFTTTA 150 (487)
Q Consensus 98 ~~~~~~~~~~~~l~~~~~~~~pD~vI~D~~~~~---------------~~~~A~~lgIP~v~~~~~~~ 150 (487)
.+....+.+.+.++ +.+||.+.....++. ...++...|||+.-+.|.-.
T Consensus 41 RL~~I~~~l~~~i~----~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~~v 104 (156)
T TIGR00228 41 RLKLIYAGVTEIIT----QFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 104 (156)
T ss_pred HHHHHHHHHHHHHH----HhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 33334444555554 449998876644431 23577788999887766533
No 467
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.88 E-value=7.3e+02 Score=28.84 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCc--cCH----HHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGI--GHL----IPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~--GH~----~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
.++|+++..|.. |+. +....++++|.+. |++|.++.+..
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~-G~~vi~v~~np 51 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE-GYQVVLVNPNP 51 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc-CCEEEEEeCCc
Confidence 357888887654 543 3677899999887 99999987543
No 468
>PRK10490 sensor protein KdpD; Provisional
Probab=20.85 E-value=1.1e+02 Score=34.49 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
+++|++-..||-|-++-||.-|+.|.++ |++|.+-.-+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e 61 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVE 61 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEee
Confidence 6899999999999999999999999888 9999876644
No 469
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=20.82 E-value=1.7e+02 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 12 AHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 12 ~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
..|+|+.=||-|-..-.+.||..|+++ |++|.++=-+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~-G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES-GKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC-CCEEEEEeeC
Confidence 468888888889999999999999887 9998888433
No 470
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=20.77 E-value=4.5e+02 Score=21.10 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=10.5
Q ss_pred HHHHHHhcCCCEEEEEe
Q 011396 31 LAKRLVHQHNFLVTIFI 47 (487)
Q Consensus 31 LA~~L~~r~GH~Vt~~~ 47 (487)
+...+.++ |++|++++
T Consensus 17 ~i~~~~~~-g~~v~vv~ 32 (128)
T PF02585_consen 17 TIAKLAEA-GHRVVVVT 32 (128)
T ss_dssp HHHHHHHT-T-EEEEEE
T ss_pred HHHHHHhc-CCeEEEEE
Confidence 33456676 99998887
No 471
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.74 E-value=1.4e+02 Score=27.68 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=19.5
Q ss_pred CceEEEeCCCcch--HHH-HHHHhCCCeEEEec
Q 011396 118 RLVALVVDIFGSA--AFD-VANEFGVPVYIFFT 147 (487)
Q Consensus 118 ~pD~vI~D~~~~~--~~~-~A~~lgIP~v~~~~ 147 (487)
+||+||....... ... +.+.+|||++.+..
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 9999998754333 122 33448999887643
No 472
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.69 E-value=1e+02 Score=32.68 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=36.8
Q ss_pred cccccccccchhHHHHHhh----CCceeccccccccchhhHhhhhhccceEEeeecCCCCcCHHHHHHHHHHhccC
Q 011396 370 TGGFLSHCGWNSILESIVH----GVPIIAWPLYAEQKMNAVLLIDDLKVSFRVKVNENGLVGREDIANYAKGLIQG 441 (487)
Q Consensus 370 ~~~~I~HGG~gt~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~ll~~ 441 (487)
++++|+-||-||+..+.+. ++|++.+-+. . +|... + ++++++.+++++++.+
T Consensus 349 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G-----------~---lGFL~---~---~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 349 ISHIISIGGDGTVLRASKLVNGEEIPIICINMG-----------T---VGFLT---E---FSKEEIFKAIDSIISG 404 (569)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-----------C---CCcCc---c---cCHHHHHHHHHHHHcC
Confidence 3499999999999999774 6777665421 1 22211 2 6778899999998876
No 473
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.63 E-value=2.7e+02 Score=31.14 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHhcc------CchhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHhhhh
Q 011396 426 VGREDIANYAKGLIQ------GEEGKLLRSKMRALKDAAANALSPDGSSTKSLAQVAQKWKNLES 484 (487)
Q Consensus 426 ~~~~~l~~~i~~ll~------~~~~~~~r~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 484 (487)
.|.+.+.+.++.++. |.+...-.++.++-++.+++|++ .|.++..|++|+++|+++..
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr~AQ~aL~eAL~-~gAsdeEI~~Lm~eLR~Am~ 537 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLRAAQDALKDALE-RGASDEEIKQLTDKLRAAMQ 537 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 356666666665533 44445566666666666666655 46778899999999998653
No 474
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=20.52 E-value=2e+02 Score=27.21 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
+..|+|+..+|.|-..-...||..|.++ |++|.++..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~ 110 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDT 110 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence 3456777788889999999999999776 99999998775
No 475
>PRK05858 hypothetical protein; Provisional
Probab=20.42 E-value=2.8e+02 Score=29.24 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=20.9
Q ss_pred cccccccch------hHHHHHhhCCceeccc
Q 011396 372 GFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 372 ~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
+++.|.|-| .+++|...++|+|++.
T Consensus 70 v~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 70 VAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred EEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 777787755 7889999999999985
No 476
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=20.38 E-value=1.3e+02 Score=29.84 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCCC
Q 011396 10 PRAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 10 ~~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
++.+|+++..|-.| +..|-+|+++ |++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~-G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAER-GADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHc-CCEEEEEecCc
Confidence 45689999977778 9999999888 99999987544
No 477
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=20.37 E-value=1.2e+02 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCC
Q 011396 28 QVELAKRLVHQHNFLVTIFIPTI 50 (487)
Q Consensus 28 ~l~LA~~L~~r~GH~Vt~~~~~~ 50 (487)
-+..|..|.++ |++|+++=...
T Consensus 8 Gl~aA~~L~~~-g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKA-GYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHT-TSEEEEEESSS
T ss_pred HHHHHHHHHHC-CCcEEEEecCc
Confidence 36788999887 99999986544
No 478
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=20.27 E-value=1.2e+02 Score=29.60 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhcCCCEEEEEeCC
Q 011396 11 RAHVAMVPTPGIGHLIPQVELAKRLVHQHNFLVTIFIPT 49 (487)
Q Consensus 11 ~~~Il~~~~~~~GH~~P~l~LA~~L~~r~GH~Vt~~~~~ 49 (487)
++||.|+..|..|. .+|..|+++ ||+|+++...
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhc-CCcEEEEecH
Confidence 45799998887774 578889887 9999998753
No 479
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=20.22 E-value=2.9e+02 Score=27.05 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.0
Q ss_pred hCCceecccccccc-----chhhHhhhhhccc-eEEeeec
Q 011396 388 HGVPIIAWPLYAEQ-----KMNAVLLIDDLKV-SFRVKVN 421 (487)
Q Consensus 388 ~GvP~l~~P~~~DQ-----~~na~~v~~~~G~-G~~l~~~ 421 (487)
++.|+|+-|-+.-- +.-++.... +|+ |+.+...
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~H 299 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEVH 299 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEec
Confidence 57999888876522 245666666 777 5677664
No 480
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.06 E-value=3.1e+02 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.1
Q ss_pred cccccccccch------hHHHHHhhCCceeccc
Q 011396 370 TGGFLSHCGWN------SILESIVHGVPIIAWP 396 (487)
Q Consensus 370 ~~~~I~HGG~g------t~~eal~~GvP~l~~P 396 (487)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33888888866 5789999999999884
Done!