Query 011398
Match_columns 487
No_of_seqs 223 out of 1197
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.5 1.3E-15 4.4E-20 126.2 3.4 64 301-364 6-70 (82)
2 4ati_A MITF, microphthalmia-as 99.5 7.8E-14 2.7E-18 122.8 7.1 68 295-362 21-92 (118)
3 1an4_A Protein (upstream stimu 99.4 4.3E-14 1.5E-18 111.7 3.0 55 299-353 3-63 (65)
4 1hlo_A Protein (transcription 99.4 9.6E-14 3.3E-18 114.1 5.2 63 301-363 12-76 (80)
5 1nkp_B MAX protein, MYC proto- 99.4 1.1E-13 3.7E-18 114.2 4.9 62 302-363 3-66 (83)
6 4h10_B Circadian locomoter out 99.4 1.3E-13 4.3E-18 112.1 3.6 59 299-357 6-65 (71)
7 1a0a_A BHLH, protein (phosphat 99.4 5.8E-14 2E-18 111.4 1.4 54 301-354 2-62 (63)
8 1nkp_A C-MYC, MYC proto-oncoge 99.3 6E-13 2E-17 111.7 5.3 60 302-361 7-69 (88)
9 4h10_A ARYL hydrocarbon recept 99.3 2.1E-13 7E-18 111.3 0.6 54 298-351 6-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.3 4.7E-12 1.6E-16 104.7 6.3 62 302-363 2-66 (80)
11 3u5v_A Protein MAX, transcript 99.2 5.3E-12 1.8E-16 103.6 3.7 58 300-357 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 98.9 6.1E-10 2.1E-14 87.5 4.3 53 302-354 3-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 98.9 2.8E-10 9.6E-15 91.6 2.0 54 301-354 12-67 (68)
14 4f3l_A Mclock, circadian locom 98.8 1.6E-09 5.5E-14 108.7 5.4 55 298-352 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 4.1E-09 1.4E-13 107.2 3.2 57 296-352 8-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 4.3E-08 1.5E-12 79.1 1.3 45 307-351 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.2 2.1E-06 7.2E-11 71.7 6.2 48 313-360 4-55 (83)
18 4aya_A DNA-binding protein inh 97.8 3.1E-05 1.1E-09 66.4 6.0 49 307-355 31-82 (97)
19 1zpv_A ACT domain protein; str 96.8 0.015 5.1E-07 46.5 11.4 67 412-481 4-70 (91)
20 2nyi_A Unknown protein; protei 96.1 0.017 5.8E-07 53.5 8.5 68 413-481 5-73 (195)
21 1u8s_A Glycine cleavage system 96.0 0.016 5.5E-07 52.9 8.0 65 413-481 6-70 (192)
22 2ko1_A CTR148A, GTP pyrophosph 95.6 0.087 3E-06 41.3 9.7 49 413-461 5-53 (88)
23 2nyi_A Unknown protein; protei 94.8 0.1 3.5E-06 48.2 8.8 65 413-481 93-163 (195)
24 1u8s_A Glycine cleavage system 94.2 0.29 9.9E-06 44.5 10.3 66 413-481 93-166 (192)
25 3p96_A Phosphoserine phosphata 91.7 0.34 1.2E-05 48.8 7.5 67 413-481 12-78 (415)
26 3o1l_A Formyltetrahydrofolate 89.5 1.3 4.5E-05 44.3 9.4 67 412-480 21-89 (302)
27 3n0v_A Formyltetrahydrofolate 87.7 2 6.8E-05 42.5 9.2 66 413-481 8-75 (286)
28 3lou_A Formyltetrahydrofolate 87.6 2.2 7.6E-05 42.3 9.5 69 413-481 10-80 (292)
29 3obi_A Formyltetrahydrofolate 86.9 2.2 7.4E-05 42.3 9.0 67 413-481 6-74 (288)
30 2jhe_A Transcription regulator 84.4 2 6.9E-05 37.0 6.5 37 415-452 2-38 (190)
31 2f1f_A Acetolactate synthase i 81.4 4 0.00014 37.4 7.5 65 414-482 4-70 (164)
32 3nrb_A Formyltetrahydrofolate 80.8 5.7 0.00019 39.3 9.0 66 412-481 6-73 (287)
33 2f06_A Conserved hypothetical 79.4 12 0.00042 32.0 9.7 59 417-484 76-134 (144)
34 2pc6_A Probable acetolactate s 77.0 4.9 0.00017 36.9 6.7 65 414-482 5-71 (165)
35 1y7p_A Hypothetical protein AF 71.9 8.6 0.0003 37.2 7.2 62 413-480 4-70 (223)
36 2fgc_A Acetolactate synthase, 67.6 12 0.00041 35.4 7.1 62 414-479 30-93 (193)
37 2f06_A Conserved hypothetical 66.2 37 0.0013 28.9 9.5 61 415-484 8-68 (144)
38 2wt7_A Proto-oncogene protein 46.9 29 0.001 26.7 4.9 39 309-360 1-39 (63)
39 2er8_A Regulatory protein Leu3 34.7 28 0.00094 26.5 3.0 21 344-364 49-69 (72)
40 2re1_A Aspartokinase, alpha an 33.3 2.3E+02 0.0077 24.9 9.3 60 413-482 103-165 (167)
41 2ke4_A CDC42-interacting prote 30.0 69 0.0024 27.0 4.9 60 303-363 8-88 (98)
42 1hwt_C Protein (heme activator 28.6 26 0.0009 27.1 2.0 23 342-364 56-78 (81)
43 1zme_C Proline utilization tra 26.8 34 0.0012 25.7 2.3 20 344-363 44-63 (70)
44 2lqj_A Mg2+ transport protein; 25.7 1.8E+02 0.0061 24.0 6.7 37 413-449 8-46 (94)
45 1pyi_A Protein (pyrimidine pat 25.4 1.4E+02 0.0048 23.6 5.9 22 344-365 48-69 (96)
46 3fx7_A Putative uncharacterize 24.2 1.3E+02 0.0043 25.5 5.5 22 339-360 65-86 (94)
47 2zvf_A Alanyl-tRNA synthetase; 22.9 3.8E+02 0.013 23.3 9.0 54 422-482 82-135 (171)
48 2dtj_A Aspartokinase; protein- 20.6 3.7E+02 0.013 23.8 8.4 38 412-449 14-52 (178)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.55 E-value=1.3e-15 Score=126.17 Aligned_cols=64 Identities=27% Similarity=0.403 Sum_probs=59.4
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCCC-CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011398 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-SKMDRASILGDAIDYLKELLQRINDLHNELESTP 364 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~-sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl~ 364 (487)
++..|+.+||+||.+||++|.+|+++||.. .|++|++||.+||+||++|+.+++.|+.+.+.+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999986 8999999999999999999999999999876553
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.45 E-value=7.8e-14 Score=122.85 Aligned_cols=68 Identities=25% Similarity=0.449 Sum_probs=53.2
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHhhccCCCC----CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011398 295 KGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRINDLHNELES 362 (487)
Q Consensus 295 k~rr~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~es 362 (487)
..+++.++..|+.+||+||.+||++|.+|+.|||.+ .|++|++||..||+||++||++++.|+.+...
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788999999999999999999999999975 37789999999999999999999999876443
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=4.3e-14 Score=111.72 Aligned_cols=55 Identities=35% Similarity=0.505 Sum_probs=50.1
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccCCCCC------cCChhhHHHHHHHHHHHHHHHH
Q 011398 299 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPKIS------KMDRASILGDAIDYLKELLQRI 353 (487)
Q Consensus 299 ~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~s------K~dKaSIL~dAI~YIk~Lq~qv 353 (487)
..++..|+.+||+||.+||+.|.+|++|||.+. |++|++||..||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999999999999754 7899999999999999999864
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=9.6e-14 Score=114.05 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=58.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCCC--CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011398 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI--SKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~--sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
++..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999974 699999999999999999999999999998765
No 5
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.41 E-value=1.1e-13 Score=114.22 Aligned_cols=62 Identities=27% Similarity=0.457 Sum_probs=56.8
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCC--CCcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011398 302 PAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
+..|+.+||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+.+++.|+.+++.+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999997 4899999999999999999999998888876654
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=112.12 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=53.0
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHhhccCCC-CCcCChhhHHHHHHHHHHHHHHHHHHHH
Q 011398 299 KGLPAKNLMAERRRRKKLNDRLYMLRSVVPK-ISKMDRASILGDAIDYLKELLQRINDLH 357 (487)
Q Consensus 299 ~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~-~sK~dKaSIL~dAI~YIk~Lq~qv~~Le 357 (487)
+.++.+|+++||+||++||++|.+|++|||. ..|+||++||..||+||++||.++.=|+
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456789999999999999999999999996 4699999999999999999999887653
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.39 E-value=5.8e-14 Score=111.35 Aligned_cols=54 Identities=26% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCCC-------CcCChhhHHHHHHHHHHHHHHHHH
Q 011398 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPKI-------SKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~-------sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
++.+|+.+||+||.+||..|..|++|||.. ++.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999953 567899999999999999998753
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.34 E-value=6e-13 Score=111.74 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=54.3
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCCC---CcCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011398 302 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRINDLHNELE 361 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~e 361 (487)
+..|+.+||+||.+||+.|..||.+||.. .|++|++||..||+||++|+.+.+.+..+++
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999974 5999999999999999999999887766544
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.31 E-value=2.1e-13 Score=111.27 Aligned_cols=54 Identities=31% Similarity=0.414 Sum_probs=49.2
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhccCCCC----CcCChhhHHHHHHHHHHHHHH
Q 011398 298 RKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQ 351 (487)
Q Consensus 298 r~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~ 351 (487)
.+.++..|..+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 445568899999999999999999999999964 799999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.27 E-value=4.7e-12 Score=104.68 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=56.0
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCCC---CcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011398 302 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRINDLHNELEST 363 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~esl 363 (487)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+++.+.|..+++.+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999964 688999999999999999999999998887654
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.21 E-value=5.3e-12 Score=103.64 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=48.0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHhhccCCC---CCcC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 011398 300 GLPAKNLMAERRRRKKLNDRLYMLRSVVPK---ISKM-DRASILGDAIDYLKELLQRINDLH 357 (487)
Q Consensus 300 ~~~~~H~~~ERrRR~kiN~~~~~LRsLVP~---~sK~-dKaSIL~dAI~YIk~Lq~qv~~Le 357 (487)
.++..|+.+||+||.+||+.|.+||.+||. ..|. .|.+||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999994 3455 688999999999999999998763
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.92 E-value=6.1e-10 Score=87.54 Aligned_cols=53 Identities=32% Similarity=0.346 Sum_probs=47.8
Q ss_pred CccccHHHHHHHHHHHHHHHHhhccCCCC---CcCChhhHHHHHHHHHHHHHHHHH
Q 011398 302 PAKNLMAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 302 ~~~H~~~ERrRR~kiN~~~~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
+..|+..||+|+..||+.|..||.+||.. .|++|..||..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999964 588999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.91 E-value=2.8e-10 Score=91.61 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=48.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHhhccCCC--CCcCChhhHHHHHHHHHHHHHHHHH
Q 011398 301 LPAKNLMAERRRRKKLNDRLYMLRSVVPK--ISKMDRASILGDAIDYLKELLQRIN 354 (487)
Q Consensus 301 ~~~~H~~~ERrRR~kiN~~~~~LRsLVP~--~sK~dKaSIL~dAI~YIk~Lq~qv~ 354 (487)
++..|+..||+|+..||+.|..||.+||. ..|++|..||..||+||..|++.++
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45679999999999999999999999996 4688999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.85 E-value=1.6e-09 Score=108.73 Aligned_cols=55 Identities=27% Similarity=0.472 Sum_probs=42.8
Q ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhccCC-CCCcCChhhHHHHHHHHHHHHHHH
Q 011398 298 RKGLPAKNLMAERRRRKKLNDRLYMLRSVVP-KISKMDRASILGDAIDYLKELLQR 352 (487)
Q Consensus 298 r~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP-~~sK~dKaSIL~dAI~YIk~Lq~q 352 (487)
++.++..|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4555678999999999999999999999999 568999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.71 E-value=4.1e-09 Score=107.21 Aligned_cols=57 Identities=32% Similarity=0.430 Sum_probs=49.9
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHhhccCC----CCCcCChhhHHHHHHHHHHHHHHH
Q 011398 296 GKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVP----KISKMDRASILGDAIDYLKELLQR 352 (487)
Q Consensus 296 ~rr~~~~~~H~~~ERrRR~kiN~~~~~LRsLVP----~~sK~dKaSIL~dAI~YIk~Lq~q 352 (487)
.|.+.++.+|+.+||+||++||..|.+|++||| ...|+||++||..||.|||.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 345566789999999999999999999999999 578999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.43 E-value=4.3e-08 Score=79.08 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCC---CcCChhhHHHHHHHHHHHHHH
Q 011398 307 MAERRRRKKLNDRLYMLRSVVPKI---SKMDRASILGDAIDYLKELLQ 351 (487)
Q Consensus 307 ~~ERrRR~kiN~~~~~LRsLVP~~---sK~dKaSIL~dAI~YIk~Lq~ 351 (487)
..||+|+..||+.|..||.+||.. .|++|..||..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999963 688999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.19 E-value=2.1e-06 Score=71.68 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccCCCC----CcCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011398 313 RKKLNDRLYMLRSVVPKI----SKMDRASILGDAIDYLKELLQRINDLHNEL 360 (487)
Q Consensus 313 R~kiN~~~~~LRsLVP~~----sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~ 360 (487)
|..||+++.+|..|||.+ .|.+|++||..||+||++||+.++.+..+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 578999999999999999999888776654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.78 E-value=3.1e-05 Score=66.38 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC---CCcCChhhHHHHHHHHHHHHHHHHHH
Q 011398 307 MAERRRRKKLNDRLYMLRSVVPK---ISKMDRASILGDAIDYLKELLQRIND 355 (487)
Q Consensus 307 ~~ERrRR~kiN~~~~~LRsLVP~---~sK~dKaSIL~dAI~YIk~Lq~qv~~ 355 (487)
..||.|=..||+.|..||.+||. ..|+.|..+|.-||+||+.|++-++.
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778999999999999996 36889999999999999999987754
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.83 E-value=0.015 Score=46.48 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=55.3
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
..+.|+|.|+.+||++.+|..+|-+.|.+|.+.+.....+.+.-.+.++. .+ ....++|.+.|....
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~~--~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DE--KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SS--CCCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-CC--CCCHHHHHHHHHHHH
Confidence 35779999999999999999999999999999999888888777777764 22 356788888887543
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.09 E-value=0.017 Score=53.47 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=52.4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCC-cccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREG-QDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG-~~v~~eeIkaaLl~sa 481 (487)
.+.|.|.|+.|||++..|..+|.++|++|+.+.+.+..+.++-.+.+.. ... .....++|++.|...+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-NAKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-cCccchhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988887666776653 221 0012577777776544
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.04 E-value=0.016 Score=52.95 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|.|.|+.+||++.+|..+|.+.|++|+.+.+.+..+.++-.+.+.. . ....++|++.|...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~-~---~~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S---PSNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec-C---CCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999988888777777753 1 135677887777654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.64 E-value=0.087 Score=41.30 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEee
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQ 461 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq 461 (487)
.+.|+|.+.++||+|.+|..+|.+.|++|.+..+...++.+..+|.++.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 4678889999999999999999999999999999887765555555554
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.78 E-value=0.1 Score=48.19 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=50.8
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n------g~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|+|.|+.+||++..|-.+|-++|++|..+...+.. ++++-.+.+.. .. ... ++|++.|...+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~-~~--~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF-PF--PLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE-EG--GGH-HHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc-CC--Ccc-HHHHHHHHHHH
Confidence 46799999999999999999999999999999999876 45544444432 22 334 88998887654
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.17 E-value=0.29 Score=44.54 Aligned_cols=66 Identities=8% Similarity=-0.015 Sum_probs=50.4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--------CEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--------GFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--------g~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|.|.|+.++|++.+|.++|.+.|++|..+...+.. +.++-.+.+.. . .....++|++.|...+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~-~--~~~~~~~l~~~l~~~~ 166 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV-D--SGCNLMQLQEEFDALC 166 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE-C--TTSCHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC-C--CCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988775 23333333332 1 2457888998887654
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.74 E-value=0.34 Score=48.81 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=53.6
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.|+.|||+...|...|-+.|.+|+.++-....+.++-.+.+.. . +.....++|++.|...+
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~-~-~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC-P-ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE-C-HHHHTSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe-c-CCcCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999998777666653 1 11224578888876654
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.49 E-value=1.3 Score=44.25 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=51.0
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011398 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF--NGFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~--ng~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
..+.|++.|++|+|+...|-..|-+.|++|+.++-... .|+++-.+.+. -.+.....++|++.|...
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~--~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR--ADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE--GGGSSSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe--cCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999999998865 56654443332 122246788898888554
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=87.70 E-value=2 Score=42.53 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=50.6
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.|++++|+...|-..|-+.|++|..++.. ...+.++-.+.+.. . + ....++|++.|...+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~-~-~~~~~~L~~~f~~la 75 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ-P-D-DFDEAGFRAGLAERS 75 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-C-S-SCCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec-C-C-CCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999877 44566554443432 2 2 467889998886544
No 28
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.60 E-value=2.2 Score=42.33 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=49.4
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.|++|+|+...|-..|-+.|++|..++-. ...|.++-.+.+.....+.....++|++.|...+
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la 80 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIA 80 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999887 3456655433332210022466888888886543
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=86.89 E-value=2.2 Score=42.29 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=50.9
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
.+.|++.|++|+|+...|-..|-+.|++|..++.. ...|.++-.+.+.. .+.....++|++.|...+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~~~~L~~~f~~la 74 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA--AAKVIPLASLRTGFGVIA 74 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc--CCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999875 34566555444432 222467888998886544
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=84.37 E-value=2 Score=36.99 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 011398 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGF 452 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~ 452 (487)
.|+|.|..|+|+|.+|+++|.+.++++..+++... |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 48899999999999999999999999999999766 55
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=81.38 E-value=4 Score=37.41 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011398 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
..|.|.+..+||+|.+|..+|...|++|.+.++.... +...-+|.+. +.+...++|...|.+..+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~----~d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV----GDEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE----SCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe----ccHHHHHHHHHHHcCCCC
Confidence 4578888999999999999999999999998887554 5666666664 224667777777776544
No 32
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=80.76 E-value=5.7 Score=39.28 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=46.7
Q ss_pred cEEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhc
Q 011398 412 RAVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVIS--CFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTA 481 (487)
Q Consensus 412 ~~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS--~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~sa 481 (487)
..+.|++.|++++|+...|-..|-+.|++|+.++.. ...|.++-.+.+.. ++ ...++|++.|...+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~--~~~~~L~~~f~~la 73 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI--PV--AGVNDFNSAFGKVV 73 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CC-----CHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc--CC--CCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999875 34565554333321 22 22347887775543
No 33
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=79.36 E-value=12 Score=32.00 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=41.3
Q ss_pred EEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011398 417 HMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 417 ~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
-+..+.+||.+.+++++|.+.|+.|....++..++.....|+.+ ..+...++|++ +||.
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~--------d~~~A~~~L~~-~g~~ 134 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS--------NMDKCIEVLKE-KKVD 134 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES--------CHHHHHHHHHH-TTCE
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC--------CHHHHHHHHHH-cCCE
Confidence 33455899999999999999999996644442455555555442 56777777766 6763
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=76.97 E-value=4.9 Score=36.91 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011398 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
..|.|....+||+|.+|..+|...|++|.+.++.... +...-+|.+.. .+...++|...|.+..+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~----d~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG----PDEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE----CHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec----cHHHHHHHHHHhcCCCC
Confidence 4578888899999999999999999999998887554 66666777752 24667777777766544
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=71.86 E-value=8.6 Score=37.23 Aligned_cols=62 Identities=16% Similarity=0.071 Sum_probs=43.2
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEeeecCCcccCHHHHHHHHHHh
Q 011398 413 AVNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCF-----NGFALDVFRAEQCREGQDVLPKQIKSVLLDT 480 (487)
Q Consensus 413 ~V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~-----ng~v~~tf~aEq~keG~~v~~eeIkaaLl~s 480 (487)
.+.|.|.+.+|+|+|.+|+.+|-+.+.+|.+.+.... ++.+.-+ ++. ++ . ..++|-+.|.+.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV-~d--~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEI-EG--G-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEE-CS--S-CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEE-CC--C-CHHHHHHHHhCC
Confidence 4678889999999999999999999999999999886 3454444 543 11 2 677777776654
No 36
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=67.60 E-value=12 Score=35.38 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=48.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEeeecCCcccCHHHHHHHHHH
Q 011398 414 VNIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFN--GFALDVFRAEQCREGQDVLPKQIKSVLLD 479 (487)
Q Consensus 414 V~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~n--g~v~~tf~aEq~keG~~v~~eeIkaaLl~ 479 (487)
..|.|....+||.|.+|..+|...|++|.+..+.... +...-+|++. +.+...++|+..|.+
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~----g~e~~ieqL~kQL~K 93 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK----GDDKTIEQIEKQAYK 93 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE----ECTTHHHHHHHHHTT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE----CCHHHHHHHHHHhcC
Confidence 3577788899999999999999999999998886443 5566666664 225677888887765
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=66.16 E-value=37 Score=28.93 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=41.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcCCC
Q 011398 415 NIHMFCARRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAGFH 484 (487)
Q Consensus 415 ~I~I~C~krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG~~ 484 (487)
.|+|..+.+||.+.+|..+|.+.|+.|....+....++-+ +++.. -.++..++.|.+ .||.
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~--~~~~~------~d~~~a~~~L~~-~G~~ 68 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI--LRGIV------SDPDKAYKALKD-NHFA 68 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEE------SCHHHHHHHHHH-TTCC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE--EEEEe------CCHHHHHHHHHH-cCCe
Confidence 4666778999999999999999999999877664433222 22221 245666666654 4664
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=46.86 E-value=29 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 011398 309 ERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNEL 360 (487)
Q Consensus 309 ERrRR~kiN~~~~~LRsLVP~~sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~ 360 (487)
||++|.+..++.++-++= ..-..||..|+.+++.|+.+.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888777762 122345555555555555443
No 39
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.67 E-value=28 Score=26.51 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 011398 344 DYLKELLQRINDLHNELESTP 364 (487)
Q Consensus 344 ~YIk~Lq~qv~~Le~e~esl~ 364 (487)
.||..|+++|+.|+..++.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988764
No 40
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.28 E-value=2.3e+02 Score=24.86 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=38.7
Q ss_pred EEEEEEEcCC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011398 413 AVNIHMFCAR---RPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 413 ~V~I~I~C~k---rpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
-..|.|.... .+|.+.+++++|.+.|+.|.... +....+..++.. -..+....+|++..+
T Consensus 103 ~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~--------~d~~~av~~Lh~~f~ 165 (167)
T 2re1_A 103 VCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDE--------KYMELATRVLHKAFN 165 (167)
T ss_dssp EEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEG--------GGHHHHHHHHHHHTT
T ss_pred EEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeH--------HHHHHHHHHHHHHhc
Confidence 4556776654 79999999999999999998844 444444444322 123444555665543
No 41
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.02 E-value=69 Score=27.04 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=41.4
Q ss_pred ccccHHHHHHHHHHHHHHHHhhccCC--------------------CC-CcCChhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011398 303 AKNLMAERRRRKKLNDRLYMLRSVVP--------------------KI-SKMDRASILGDAIDYLKELLQRINDLHNELE 361 (487)
Q Consensus 303 ~~H~~~ERrRR~kiN~~~~~LRsLVP--------------------~~-sK~dKaSIL~dAI~YIk~Lq~qv~~Le~e~e 361 (487)
.+|...|| ||++|..++..|..=+- .. .......-|.++..-|..|+..+..++.-+.
T Consensus 8 ~s~LPpeq-RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQ-QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778887 66778888877765552 21 1222344588889999999999888887766
Q ss_pred cC
Q 011398 362 ST 363 (487)
Q Consensus 362 sl 363 (487)
++
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 42
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.59 E-value=26 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 011398 342 AIDYLKELLQRINDLHNELESTP 364 (487)
Q Consensus 342 AI~YIk~Lq~qv~~Le~e~esl~ 364 (487)
.-.||..|+++|+.|+..+..+.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999998887654
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.75 E-value=34 Score=25.71 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 011398 344 DYLKELLQRINDLHNELEST 363 (487)
Q Consensus 344 ~YIk~Lq~qv~~Le~e~esl 363 (487)
.||..|+++++.|+..++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776554
No 44
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=25.68 E-value=1.8e+02 Score=23.98 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=30.4
Q ss_pred EEEEEEEcCCC--CCHHHHHHHHHHhCCCeEEEEEEEee
Q 011398 413 AVNIHMFCARR--PGLLLSTMRALDSLGLDIQQAVISCF 449 (487)
Q Consensus 413 ~V~I~I~C~kr--pGLL~~ImeALEsLgLdVvsAsIS~~ 449 (487)
.+.|+|.|.+. .-+...++++|+..++.+.+..+..+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~ 46 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPA 46 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecC
Confidence 47899999864 56778889999999999999996553
No 45
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.44 E-value=1.4e+02 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC
Q 011398 344 DYLKELLQRINDLHNELESTPT 365 (487)
Q Consensus 344 ~YIk~Lq~qv~~Le~e~esl~~ 365 (487)
.||+.|+++|+.|+..+..+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999999987654
No 46
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.20 E-value=1.3e+02 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 011398 339 LGDAIDYLKELLQRINDLHNEL 360 (487)
Q Consensus 339 L~dAI~YIk~Lq~qv~~Le~e~ 360 (487)
...|=+||..|+++|+-|+..+
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5678899999999999998865
No 47
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.85 E-value=3.8e+02 Score=23.31 Aligned_cols=54 Identities=9% Similarity=-0.025 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEeeecCCcccCHHHHHHHHHHhcC
Q 011398 422 RRPGLLLSTMRALDSLGLDIQQAVISCFNGFALDVFRAEQCREGQDVLPKQIKSVLLDTAG 482 (487)
Q Consensus 422 krpGLL~~ImeALEsLgLdVvsAsIS~~ng~v~~tf~aEq~keG~~v~~eeIkaaLl~saG 482 (487)
..+..|..++..|.+. +.+-+-++..++ +..++.+ .++ .+.+.+|...+...+|
T Consensus 82 ~d~~~lr~~~~~l~~~--~~vv~l~~~~~~-~~~v~~~--~~~--~~~a~~lvk~~~~~~g 135 (171)
T 2zvf_A 82 ADMQALQKLAERLAEK--GAVGCLMAKGEG-KVFVVTF--SGQ--KYDARELLREIGRVAK 135 (171)
T ss_dssp CCHHHHHHHHHHHHHT--TEEEEEEEECSS-SEEEEEE--ESS--SSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcC--CCEEEEEEcCCC-eEEEEEE--CCC--CCCHHHHHHHHHHHcC
Confidence 3456778888888776 333333444466 3333322 223 4788888888888775
No 48
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=20.65 E-value=3.7e+02 Score=23.77 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=28.2
Q ss_pred cEEEEEEE-cCCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 011398 412 RAVNIHMF-CARRPGLLLSTMRALDSLGLDIQQAVISCF 449 (487)
Q Consensus 412 ~~V~I~I~-C~krpGLL~~ImeALEsLgLdVvsAsIS~~ 449 (487)
....|+|. -+.++|.+.+|++.|.+.++.|.-...+..
T Consensus 14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 45566663 467899999999999999977665554443
Done!