Query 011400
Match_columns 487
No_of_seqs 357 out of 3143
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 00:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-60 2.3E-65 475.2 30.0 306 177-484 181-491 (491)
2 KOG0730 AAA+-type ATPase [Post 100.0 4.3E-50 9.3E-55 422.5 23.2 271 191-480 418-692 (693)
3 KOG0739 AAA+-type ATPase [Post 100.0 6.7E-50 1.5E-54 386.2 20.8 298 184-484 110-438 (439)
4 COG1222 RPT1 ATP-dependent 26S 100.0 5.1E-49 1.1E-53 389.8 22.9 250 197-465 141-394 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4E-49 8.7E-54 409.7 23.1 290 188-482 492-789 (802)
6 KOG0736 Peroxisome assembly fa 100.0 1.6E-47 3.5E-52 406.2 24.3 284 198-482 663-952 (953)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-45 1E-49 379.4 20.5 282 200-484 183-517 (802)
8 KOG0737 AAA+-type ATPase [Post 100.0 2.9E-44 6.2E-49 357.9 24.3 283 199-483 84-382 (386)
9 KOG0740 AAA+-type ATPase [Post 100.0 1.4E-41 3E-46 349.4 18.5 288 190-484 136-426 (428)
10 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-40 2.5E-45 373.4 27.2 288 194-483 440-731 (733)
11 KOG0734 AAA+-type ATPase conta 100.0 1.7E-40 3.7E-45 340.8 18.4 241 202-464 299-542 (752)
12 COG1223 Predicted ATPase (AAA+ 100.0 3.1E-39 6.7E-44 307.5 19.4 246 200-468 114-360 (368)
13 COG0464 SpoVK ATPases of the A 100.0 2.1E-38 4.6E-43 340.8 24.0 257 196-477 231-492 (494)
14 KOG0735 AAA+-type ATPase [Post 100.0 7.6E-38 1.6E-42 330.0 22.4 268 202-481 662-935 (952)
15 KOG0727 26S proteasome regulat 100.0 8E-38 1.7E-42 296.7 20.2 247 199-464 147-397 (408)
16 PTZ00454 26S protease regulato 100.0 2E-37 4.2E-42 322.8 23.7 250 198-466 136-389 (398)
17 KOG0728 26S proteasome regulat 100.0 9.3E-38 2E-42 296.0 19.1 253 197-468 137-393 (404)
18 KOG0726 26S proteasome regulat 100.0 6.6E-38 1.4E-42 302.3 15.5 248 198-464 176-427 (440)
19 KOG0731 AAA+-type ATPase conta 100.0 2.8E-37 6.1E-42 334.4 20.0 246 200-465 304-555 (774)
20 KOG0652 26S proteasome regulat 100.0 4.1E-37 8.8E-42 293.1 17.9 249 198-465 162-414 (424)
21 PRK03992 proteasome-activating 100.0 1.5E-36 3.3E-41 316.6 23.6 255 197-470 121-379 (389)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 2.8E-36 6E-41 320.6 25.8 255 201-480 222-483 (489)
23 KOG0729 26S proteasome regulat 100.0 1E-36 2.2E-41 291.1 16.2 267 171-464 149-419 (435)
24 PTZ00361 26 proteosome regulat 100.0 2.5E-35 5.4E-40 309.1 22.2 249 198-465 174-426 (438)
25 COG0465 HflB ATP-dependent Zn 100.0 3.1E-35 6.8E-40 313.7 18.9 245 199-463 142-390 (596)
26 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-34 3.6E-39 310.5 23.8 248 199-466 47-298 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.5E-33 3.4E-38 292.0 23.0 247 198-463 113-363 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 1.4E-32 3E-37 292.2 22.8 272 196-483 171-500 (512)
29 KOG0730 AAA+-type ATPase [Post 100.0 4.2E-33 9.2E-38 294.2 17.3 256 202-485 180-441 (693)
30 KOG0651 26S proteasome regulat 100.0 3.5E-33 7.5E-38 272.1 15.3 247 199-464 124-374 (388)
31 CHL00176 ftsH cell division pr 100.0 1.5E-32 3.3E-37 300.3 22.2 244 200-463 176-423 (638)
32 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-31 3.5E-36 299.8 23.4 280 201-484 172-459 (733)
33 KOG0732 AAA+-type ATPase conta 100.0 6E-32 1.3E-36 299.7 16.3 265 200-469 258-531 (1080)
34 KOG0741 AAA+-type ATPase [Post 100.0 6.2E-32 1.3E-36 277.8 13.5 274 201-478 213-505 (744)
35 PRK10733 hflB ATP-dependent me 100.0 2.1E-30 4.5E-35 285.8 23.2 247 201-467 146-396 (644)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.7E-30 1.7E-34 293.2 18.2 204 237-466 1627-1880(2281)
37 PLN00020 ribulose bisphosphate 100.0 1.6E-28 3.4E-33 247.7 20.9 220 202-427 110-353 (413)
38 COG0466 Lon ATP-dependent Lon 99.9 1.6E-23 3.4E-28 223.8 17.3 280 157-465 284-586 (782)
39 KOG2004 Mitochondrial ATP-depe 99.9 1.7E-22 3.7E-27 214.7 18.2 250 158-435 373-643 (906)
40 KOG0742 AAA+-type ATPase [Post 99.9 5.5E-22 1.2E-26 199.6 19.7 251 162-421 302-588 (630)
41 CHL00181 cbbX CbbX; Provisiona 99.9 5.8E-22 1.3E-26 198.8 18.1 215 206-431 22-260 (287)
42 TIGR02881 spore_V_K stage V sp 99.9 1E-21 2.2E-26 194.7 16.1 214 206-430 5-243 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.9 2.7E-21 5.9E-26 193.8 16.8 236 207-459 22-281 (284)
44 KOG0744 AAA+-type ATPase [Post 99.9 2.1E-21 4.5E-26 190.7 14.4 184 206-390 141-342 (423)
45 PF00004 AAA: ATPase family as 99.9 2.6E-21 5.7E-26 170.0 13.0 130 243-374 1-132 (132)
46 KOG0736 Peroxisome assembly fa 99.9 9.2E-21 2E-25 202.9 17.3 240 240-484 431-678 (953)
47 KOG0743 AAA+-type ATPase [Post 99.8 2.1E-20 4.6E-25 191.9 16.0 225 204-438 198-436 (457)
48 KOG0735 AAA+-type ATPase [Post 99.8 4.6E-20 1E-24 196.0 17.3 219 238-470 429-655 (952)
49 TIGR00763 lon ATP-dependent pr 99.8 3.8E-20 8.3E-25 208.8 15.8 202 159-388 283-505 (775)
50 PF05496 RuvB_N: Holliday junc 99.8 5.3E-19 1.1E-23 168.5 13.9 189 201-418 18-222 (233)
51 TIGR02639 ClpA ATP-dependent C 99.8 2.3E-18 5E-23 193.4 21.3 240 189-464 164-430 (731)
52 TIGR00635 ruvB Holliday juncti 99.8 9.4E-18 2E-22 169.6 19.6 212 205-463 2-229 (305)
53 COG2256 MGS1 ATPase related to 99.8 6.6E-18 1.4E-22 171.1 18.3 212 201-470 18-245 (436)
54 PRK00080 ruvB Holliday junctio 99.8 2E-17 4.4E-22 169.3 21.3 219 201-466 19-253 (328)
55 PRK10787 DNA-binding ATP-depen 99.8 3.1E-17 6.7E-22 184.3 22.8 268 157-464 283-583 (784)
56 COG2255 RuvB Holliday junction 99.7 2.9E-17 6.4E-22 159.6 14.7 183 201-411 20-218 (332)
57 COG0464 SpoVK ATPases of the A 99.7 1.4E-16 3.1E-21 171.7 19.4 224 226-466 3-229 (494)
58 PRK11034 clpA ATP-dependent Cl 99.7 6.6E-17 1.4E-21 180.5 17.0 240 189-464 168-434 (758)
59 TIGR02902 spore_lonB ATP-depen 99.7 3.8E-16 8.3E-21 169.2 19.9 224 192-464 50-333 (531)
60 PRK12323 DNA polymerase III su 99.7 2.9E-16 6.4E-21 169.5 16.6 189 198-421 7-229 (700)
61 PRK14962 DNA polymerase III su 99.7 1.1E-15 2.4E-20 163.0 18.9 178 197-408 4-210 (472)
62 PRK14956 DNA polymerase III su 99.7 1.3E-15 2.9E-20 160.7 19.1 179 197-409 8-215 (484)
63 TIGR03345 VI_ClpV1 type VI sec 99.7 1.1E-15 2.5E-20 173.4 20.0 200 189-411 169-391 (852)
64 PRK07003 DNA polymerase III su 99.7 7.6E-16 1.7E-20 168.3 17.1 188 198-420 7-223 (830)
65 PRK10865 protein disaggregatio 99.7 9.2E-16 2E-20 174.5 18.3 183 189-394 160-360 (857)
66 PRK13342 recombination factor 99.7 3.5E-15 7.5E-20 157.5 19.7 154 199-390 4-166 (413)
67 PRK14961 DNA polymerase III su 99.7 6E-15 1.3E-19 153.1 20.9 188 198-420 7-223 (363)
68 PRK14960 DNA polymerase III su 99.7 3.3E-15 7.2E-20 161.8 19.1 187 198-419 6-221 (702)
69 CHL00095 clpC Clp protease ATP 99.7 1.4E-15 3.1E-20 172.9 16.7 200 189-411 161-382 (821)
70 PRK14958 DNA polymerase III su 99.7 1.8E-15 3.9E-20 162.8 16.2 189 198-421 7-224 (509)
71 TIGR03346 chaperone_ClpB ATP-d 99.6 2.4E-15 5.2E-20 171.5 17.3 199 189-410 155-376 (852)
72 PRK04195 replication factor C 99.6 3.4E-15 7.3E-20 160.5 17.5 190 197-419 4-201 (482)
73 PRK07994 DNA polymerase III su 99.6 1.2E-14 2.6E-19 159.1 21.8 187 199-420 8-223 (647)
74 PRK14949 DNA polymerase III su 99.6 1.3E-14 2.8E-19 161.4 21.8 190 198-422 7-225 (944)
75 PRK14964 DNA polymerase III su 99.6 1.4E-14 2.9E-19 154.4 20.7 189 198-421 4-221 (491)
76 PRK07940 DNA polymerase III su 99.6 6.7E-15 1.4E-19 153.6 17.5 187 205-419 3-216 (394)
77 TIGR02928 orc1/cdc6 family rep 99.6 2.3E-14 5.1E-19 148.2 21.0 228 202-466 10-277 (365)
78 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.4E-19 156.1 18.7 190 197-421 11-233 (507)
79 PLN03025 replication factor C 99.6 1E-14 2.3E-19 148.7 17.6 177 197-408 3-192 (319)
80 PRK08691 DNA polymerase III su 99.6 1.1E-14 2.3E-19 159.2 17.4 189 198-421 7-224 (709)
81 PTZ00112 origin recognition co 99.6 3.9E-14 8.4E-19 155.7 21.5 225 203-466 751-1009(1164)
82 PRK12402 replication factor C 99.6 1.8E-14 4E-19 147.1 18.1 190 197-419 5-225 (337)
83 PHA02544 44 clamp loader, smal 99.6 2.2E-14 4.7E-19 145.8 17.8 162 197-388 11-173 (316)
84 PRK00149 dnaA chromosomal repl 99.6 2.6E-14 5.6E-19 152.5 19.1 196 201-421 116-326 (450)
85 PRK05342 clpX ATP-dependent pr 99.6 1.8E-14 4E-19 151.1 17.0 132 208-339 72-214 (412)
86 PRK14963 DNA polymerase III su 99.6 2.2E-14 4.9E-19 154.1 17.9 177 198-408 5-209 (504)
87 TIGR00362 DnaA chromosomal rep 99.6 3.5E-14 7.5E-19 149.5 18.9 196 202-422 105-315 (405)
88 PRK14969 DNA polymerase III su 99.6 2.6E-14 5.6E-19 154.7 18.2 189 198-421 7-224 (527)
89 PRK05563 DNA polymerase III su 99.6 4.7E-14 1E-18 153.7 20.3 187 198-419 7-222 (559)
90 KOG2028 ATPase related to the 99.6 1.7E-14 3.7E-19 144.2 14.9 218 198-464 129-369 (554)
91 PRK14951 DNA polymerase III su 99.6 2E-14 4.2E-19 157.0 16.6 187 198-419 7-227 (618)
92 TIGR02397 dnaX_nterm DNA polym 99.6 4.9E-14 1.1E-18 145.2 18.8 177 198-408 5-210 (355)
93 PRK14952 DNA polymerase III su 99.6 4.3E-14 9.3E-19 153.8 18.8 188 198-420 4-222 (584)
94 PRK07764 DNA polymerase III su 99.6 4E-14 8.7E-19 159.4 18.9 187 198-419 6-223 (824)
95 PRK14959 DNA polymerase III su 99.6 8.3E-14 1.8E-18 151.4 20.6 180 197-410 6-214 (624)
96 PRK06893 DNA replication initi 99.6 7.5E-14 1.6E-18 135.9 18.2 177 201-408 10-195 (229)
97 PRK14957 DNA polymerase III su 99.6 4.9E-14 1.1E-18 152.1 17.8 187 198-419 7-222 (546)
98 KOG0989 Replication factor C, 99.6 1.8E-13 4E-18 134.6 20.0 181 196-408 25-222 (346)
99 PRK00411 cdc6 cell division co 99.6 1.7E-13 3.8E-18 143.3 21.3 229 202-467 25-286 (394)
100 PF05673 DUF815: Protein of un 99.6 4.6E-14 1E-18 136.4 15.3 191 200-419 20-243 (249)
101 TIGR00390 hslU ATP-dependent p 99.6 3.1E-14 6.7E-19 147.4 14.4 247 207-464 12-431 (441)
102 PRK08084 DNA replication initi 99.6 2.8E-13 6.1E-18 132.4 19.8 207 202-461 17-234 (235)
103 PRK14965 DNA polymerase III su 99.6 1.1E-13 2.5E-18 151.3 18.6 177 198-408 7-212 (576)
104 PRK12422 chromosomal replicati 99.6 1.9E-13 4.1E-18 145.1 19.6 226 201-463 105-343 (445)
105 PRK07133 DNA polymerase III su 99.5 2.7E-13 5.9E-18 149.4 20.9 185 197-409 8-212 (725)
106 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.4E-13 5.2E-18 131.1 18.2 184 204-422 12-206 (226)
107 PRK14088 dnaA chromosomal repl 99.5 1.4E-13 3.1E-18 146.1 17.4 196 201-421 99-309 (440)
108 PRK13341 recombination factor 99.5 1.4E-13 3.1E-18 153.2 18.1 154 198-389 19-182 (725)
109 PRK14953 DNA polymerase III su 99.5 1.3E-13 2.9E-18 147.7 17.0 188 197-419 6-222 (486)
110 PRK05896 DNA polymerase III su 99.5 1.4E-13 3.1E-18 148.9 17.2 179 197-409 6-213 (605)
111 PRK05201 hslU ATP-dependent pr 99.5 4.2E-14 9.1E-19 146.5 12.5 246 207-463 15-432 (443)
112 TIGR02903 spore_lon_C ATP-depe 99.5 4.6E-13 9.9E-18 147.6 21.2 174 193-392 140-370 (615)
113 PRK06647 DNA polymerase III su 99.5 1.5E-13 3.3E-18 149.5 16.8 187 198-419 7-222 (563)
114 TIGR00382 clpX endopeptidase C 99.5 2.5E-13 5.4E-18 142.0 17.4 180 207-386 77-329 (413)
115 PRK00440 rfc replication facto 99.5 3.7E-13 8.1E-18 136.3 18.2 177 197-408 7-195 (319)
116 PRK14955 DNA polymerase III su 99.5 5.8E-13 1.3E-17 139.8 20.0 183 198-408 7-220 (397)
117 PRK06305 DNA polymerase III su 99.5 6.3E-13 1.4E-17 141.5 20.0 176 199-408 9-214 (451)
118 PRK08903 DnaA regulatory inact 99.5 6.2E-13 1.4E-17 128.9 18.3 202 202-461 13-224 (227)
119 PRK09111 DNA polymerase III su 99.5 2.7E-13 5.8E-18 148.3 17.3 194 197-419 14-235 (598)
120 PF00308 Bac_DnaA: Bacterial d 99.5 2.8E-13 6E-18 131.0 14.8 195 201-420 2-211 (219)
121 PRK14970 DNA polymerase III su 99.5 4.5E-13 9.8E-18 139.2 17.1 182 198-408 8-201 (367)
122 PRK08451 DNA polymerase III su 99.5 3.2E-13 6.9E-18 145.2 16.2 190 198-422 5-223 (535)
123 PRK14086 dnaA chromosomal repl 99.5 6.8E-13 1.5E-17 143.8 16.8 166 241-421 315-492 (617)
124 TIGR02640 gas_vesic_GvpN gas v 99.5 1.2E-12 2.5E-17 130.1 16.7 134 240-388 21-198 (262)
125 PRK14948 DNA polymerase III su 99.5 1.1E-12 2.4E-17 144.2 18.0 178 199-410 8-216 (620)
126 PRK08727 hypothetical protein; 99.5 2.6E-12 5.7E-17 125.4 18.7 146 241-408 42-196 (233)
127 COG2812 DnaX DNA polymerase II 99.5 3.4E-13 7.4E-18 143.5 13.3 198 197-423 6-226 (515)
128 COG0542 clpA ATP-binding subun 99.5 6.3E-13 1.4E-17 146.6 15.6 187 188-396 151-354 (786)
129 PRK14087 dnaA chromosomal repl 99.5 6.9E-13 1.5E-17 141.2 15.1 168 240-423 141-325 (450)
130 PRK14954 DNA polymerase III su 99.5 4E-12 8.6E-17 139.4 21.0 182 199-408 8-220 (620)
131 PRK14950 DNA polymerase III su 99.5 2.1E-12 4.5E-17 141.9 18.6 186 198-418 7-222 (585)
132 PRK11034 clpA ATP-dependent Cl 99.5 1.6E-12 3.4E-17 145.6 17.7 207 207-429 458-719 (758)
133 PRK13407 bchI magnesium chelat 99.4 1.1E-12 2.4E-17 134.0 14.3 162 202-388 3-216 (334)
134 PRK05642 DNA replication initi 99.4 6.6E-12 1.4E-16 122.7 18.8 156 241-419 46-210 (234)
135 cd00009 AAA The AAA+ (ATPases 99.4 3.1E-12 6.7E-17 112.5 14.3 138 211-373 2-150 (151)
136 COG1474 CDC6 Cdc6-related prot 99.4 6.1E-12 1.3E-16 130.3 18.3 224 206-469 16-271 (366)
137 TIGR02639 ClpA ATP-dependent C 99.4 5.5E-12 1.2E-16 142.1 18.5 204 207-428 454-714 (731)
138 PRK14971 DNA polymerase III su 99.4 1.3E-11 2.9E-16 135.7 19.3 176 199-408 9-214 (614)
139 CHL00081 chlI Mg-protoporyphyr 99.4 1.5E-11 3.1E-16 126.2 17.0 163 201-388 11-232 (350)
140 COG0593 DnaA ATPase involved i 99.4 2E-11 4.3E-16 126.7 17.7 167 239-420 112-289 (408)
141 COG2607 Predicted ATPase (AAA+ 99.3 3.2E-11 7E-16 115.3 16.4 191 201-420 54-276 (287)
142 COG3829 RocR Transcriptional r 99.3 3.5E-13 7.7E-18 141.8 3.3 224 200-462 238-497 (560)
143 PRK05564 DNA polymerase III su 99.3 4.7E-11 1E-15 121.6 17.8 173 205-412 2-186 (313)
144 PRK09112 DNA polymerase III su 99.3 5.4E-11 1.2E-15 122.7 18.3 202 202-433 18-256 (351)
145 KOG0991 Replication factor C, 99.3 1.8E-11 3.8E-16 116.5 12.5 180 197-408 17-206 (333)
146 PHA02244 ATPase-like protein 99.3 7.4E-11 1.6E-15 120.8 17.8 134 239-379 118-265 (383)
147 PRK06620 hypothetical protein; 99.3 6.7E-11 1.4E-15 114.0 16.6 163 201-408 10-181 (214)
148 TIGR02030 BchI-ChlI magnesium 99.3 6E-11 1.3E-15 121.6 17.1 156 205-388 2-219 (337)
149 TIGR03345 VI_ClpV1 type VI sec 99.3 4.1E-11 9E-16 136.4 17.2 204 207-429 566-834 (852)
150 COG1224 TIP49 DNA helicase TIP 99.3 1.9E-10 4.1E-15 115.5 19.4 129 300-464 292-433 (450)
151 TIGR02442 Cob-chelat-sub cobal 99.3 2.5E-11 5.5E-16 134.5 14.2 156 205-388 2-214 (633)
152 PRK07471 DNA polymerase III su 99.3 6.2E-11 1.3E-15 122.9 16.2 183 202-415 14-237 (365)
153 PRK13531 regulatory ATPase Rav 99.3 1.7E-10 3.7E-15 122.0 18.7 154 207-387 20-193 (498)
154 TIGR01650 PD_CobS cobaltochela 99.3 5.6E-11 1.2E-15 120.3 13.3 139 240-389 64-234 (327)
155 TIGR03346 chaperone_ClpB ATP-d 99.2 3E-10 6.5E-15 130.0 19.4 206 207-430 565-830 (852)
156 COG0542 clpA ATP-binding subun 99.2 5.8E-11 1.3E-15 131.2 12.7 204 207-428 491-757 (786)
157 PF01078 Mg_chelatase: Magnesi 99.2 5.5E-12 1.2E-16 119.6 3.9 46 205-264 1-46 (206)
158 COG0714 MoxR-like ATPases [Gen 99.2 7.5E-11 1.6E-15 120.9 12.5 155 207-388 24-203 (329)
159 PRK10865 protein disaggregatio 99.2 3.1E-10 6.7E-15 129.6 18.5 204 206-429 567-832 (857)
160 COG0470 HolB ATPase involved i 99.2 2.4E-10 5.2E-15 115.9 15.9 150 207-385 1-178 (325)
161 PRK09087 hypothetical protein; 99.2 2.1E-10 4.5E-15 111.5 14.5 169 241-463 45-222 (226)
162 CHL00095 clpC Clp protease ATP 99.2 1.9E-10 4.2E-15 131.1 16.5 205 207-429 509-785 (821)
163 TIGR02974 phageshock_pspF psp 99.2 2.3E-10 5E-15 117.3 15.1 195 209-437 1-230 (329)
164 COG2204 AtoC Response regulato 99.2 1.3E-10 2.7E-15 122.5 13.2 201 204-438 138-372 (464)
165 PRK07399 DNA polymerase III su 99.2 3.3E-10 7.2E-15 115.3 15.3 182 205-417 2-222 (314)
166 PF07728 AAA_5: AAA domain (dy 99.2 5.7E-11 1.2E-15 106.0 8.1 111 242-366 1-139 (139)
167 TIGR00678 holB DNA polymerase 99.2 2.5E-10 5.5E-15 107.4 12.9 127 239-387 13-167 (188)
168 TIGR01817 nifA Nif-specific re 99.2 2E-10 4.3E-15 125.3 14.0 216 201-457 190-439 (534)
169 PRK11331 5-methylcytosine-spec 99.2 3.4E-10 7.4E-15 118.8 14.6 142 206-374 174-357 (459)
170 smart00382 AAA ATPases associa 99.2 1.1E-10 2.3E-15 101.5 9.1 128 240-375 2-147 (148)
171 PRK11608 pspF phage shock prot 99.2 5.2E-10 1.1E-14 114.6 15.3 197 206-436 5-236 (326)
172 PRK15424 propionate catabolism 99.2 6.7E-11 1.4E-15 128.0 9.0 204 204-437 216-462 (538)
173 PRK08058 DNA polymerase III su 99.2 9.6E-10 2.1E-14 112.8 16.9 149 205-386 3-180 (329)
174 PRK05022 anaerobic nitric oxid 99.1 6.2E-10 1.3E-14 120.7 15.4 198 205-436 185-416 (509)
175 TIGR03015 pepcterm_ATPase puta 99.1 7.2E-09 1.6E-13 102.6 21.1 191 241-464 44-267 (269)
176 TIGR00764 lon_rel lon-related 99.1 8.6E-10 1.9E-14 121.5 15.8 53 201-267 12-64 (608)
177 PRK10820 DNA-binding transcrip 99.1 8.1E-10 1.8E-14 120.0 15.3 199 201-437 198-434 (520)
178 PRK05707 DNA polymerase III su 99.1 9.8E-10 2.1E-14 112.5 14.9 153 238-413 20-200 (328)
179 TIGR02329 propionate_PrpR prop 99.1 2.3E-10 4.9E-15 123.8 10.7 218 203-460 208-467 (526)
180 KOG1969 DNA replication checkp 99.1 1.7E-09 3.6E-14 116.9 16.8 206 196-426 260-516 (877)
181 KOG0741 AAA+-type ATPase [Post 99.1 7.5E-10 1.6E-14 115.7 13.5 147 238-387 536-685 (744)
182 PRK11388 DNA-binding transcrip 99.1 4.4E-10 9.6E-15 125.1 12.5 202 202-437 320-551 (638)
183 PRK15429 formate hydrogenlyase 99.1 8.9E-10 1.9E-14 123.6 14.4 199 203-436 372-605 (686)
184 PF07724 AAA_2: AAA domain (Cd 99.1 3.3E-10 7.1E-15 105.5 8.8 115 239-357 2-132 (171)
185 smart00350 MCM minichromosome 99.1 8E-10 1.7E-14 119.7 13.2 166 207-389 203-401 (509)
186 COG1219 ClpX ATP-dependent pro 99.1 1.6E-10 3.5E-15 114.4 5.8 133 207-339 61-203 (408)
187 PF06068 TIP49: TIP49 C-termin 99.1 1.1E-09 2.4E-14 111.5 11.5 65 206-277 23-89 (398)
188 TIGR00368 Mg chelatase-related 99.1 1.1E-09 2.4E-14 117.8 12.3 145 204-378 189-394 (499)
189 TIGR02031 BchD-ChlD magnesium 99.0 5.9E-09 1.3E-13 114.7 18.0 135 241-388 17-174 (589)
190 PRK04132 replication factor C 99.0 2.6E-09 5.5E-14 120.4 15.4 151 241-414 565-729 (846)
191 COG3604 FhlA Transcriptional r 99.0 1.9E-10 4.1E-15 120.0 5.1 152 202-382 218-401 (550)
192 PF05621 TniB: Bacterial TniB 99.0 1.6E-08 3.5E-13 101.0 17.5 200 208-428 35-272 (302)
193 KOG1514 Origin recognition com 99.0 8.5E-09 1.8E-13 111.3 16.1 232 207-469 396-661 (767)
194 PF00158 Sigma54_activat: Sigm 99.0 4.9E-09 1.1E-13 97.3 12.3 121 209-355 1-144 (168)
195 PRK06871 DNA polymerase III su 99.0 1.6E-08 3.4E-13 103.2 16.7 144 212-387 7-178 (325)
196 PF07726 AAA_3: ATPase family 99.0 3.3E-10 7.3E-15 99.4 3.9 106 242-367 1-130 (131)
197 COG1220 HslU ATP-dependent pro 99.0 4E-09 8.6E-14 105.4 11.5 156 300-463 251-433 (444)
198 PRK07993 DNA polymerase III su 99.0 1.8E-08 3.9E-13 103.4 16.8 167 213-414 8-202 (334)
199 PF13177 DNA_pol3_delta2: DNA 99.0 4.5E-09 9.8E-14 96.9 11.0 133 211-374 1-160 (162)
200 PRK09862 putative ATP-dependen 98.9 5E-09 1.1E-13 112.4 12.1 145 204-378 188-391 (506)
201 smart00763 AAA_PrkA PrkA AAA d 98.9 1.4E-08 3.1E-13 104.0 14.4 62 206-273 49-118 (361)
202 COG1221 PspF Transcriptional r 98.9 1.2E-09 2.6E-14 113.2 6.4 150 203-381 74-253 (403)
203 PRK08769 DNA polymerase III su 98.9 3.3E-08 7.1E-13 100.7 16.1 172 212-416 9-208 (319)
204 TIGR00602 rad24 checkpoint pro 98.9 1.1E-08 2.5E-13 112.4 13.7 174 196-390 73-289 (637)
205 COG0606 Predicted ATPase with 98.9 7.5E-10 1.6E-14 115.5 4.0 48 203-264 175-222 (490)
206 PRK06090 DNA polymerase III su 98.9 6.7E-08 1.5E-12 98.4 17.6 145 212-387 8-179 (319)
207 PRK08116 hypothetical protein; 98.9 7.8E-09 1.7E-13 103.0 10.4 124 239-377 113-251 (268)
208 PRK06964 DNA polymerase III su 98.9 2.7E-08 5.9E-13 102.2 14.5 133 238-387 19-203 (342)
209 KOG0990 Replication factor C, 98.9 2E-08 4.3E-13 99.9 12.5 165 196-392 30-207 (360)
210 KOG2227 Pre-initiation complex 98.9 2E-07 4.4E-12 97.0 20.2 236 206-468 149-420 (529)
211 COG1239 ChlI Mg-chelatase subu 98.9 1.7E-08 3.7E-13 104.1 12.4 161 204-390 14-234 (423)
212 PRK12377 putative replication 98.9 8.6E-09 1.9E-13 101.4 9.8 141 201-366 68-222 (248)
213 PRK15115 response regulator Gl 98.9 1.2E-07 2.7E-12 100.8 19.5 210 208-460 135-381 (444)
214 PRK10923 glnG nitrogen regulat 98.9 1.9E-08 4E-13 107.9 12.7 213 205-460 136-385 (469)
215 TIGR02915 PEP_resp_reg putativ 98.8 2.4E-08 5.2E-13 106.3 12.8 196 205-437 137-369 (445)
216 KOG2035 Replication factor C, 98.8 9.9E-08 2.1E-12 93.3 15.4 183 198-409 4-221 (351)
217 PRK08181 transposase; Validate 98.8 1.1E-08 2.3E-13 102.0 9.0 127 239-381 105-248 (269)
218 PRK11361 acetoacetate metaboli 98.8 5.4E-08 1.2E-12 103.8 14.5 199 205-437 141-373 (457)
219 KOG1942 DNA helicase, TBP-inte 98.8 1.9E-07 4.1E-12 91.9 15.0 88 300-405 297-398 (456)
220 KOG0745 Putative ATP-dependent 98.8 2E-08 4.2E-13 103.3 8.4 100 240-339 226-332 (564)
221 PRK07952 DNA replication prote 98.8 8.2E-08 1.8E-12 94.3 12.3 111 241-366 100-221 (244)
222 PTZ00111 DNA replication licen 98.7 3.6E-08 7.9E-13 110.9 10.3 165 207-388 450-657 (915)
223 PRK06835 DNA replication prote 98.7 5.1E-08 1.1E-12 99.8 10.2 113 240-367 183-306 (329)
224 TIGR01818 ntrC nitrogen regula 98.7 1.5E-07 3.3E-12 100.6 14.2 218 206-460 133-381 (463)
225 PRK06526 transposase; Provisio 98.7 1.9E-08 4.1E-13 99.4 5.8 73 238-312 96-172 (254)
226 KOG2680 DNA helicase TIP49, TB 98.7 6.9E-07 1.5E-11 88.3 16.4 91 355-464 339-430 (454)
227 PF14532 Sigma54_activ_2: Sigm 98.7 2.9E-08 6.2E-13 88.9 6.0 107 239-375 20-136 (138)
228 PRK13765 ATP-dependent proteas 98.7 2E-07 4.4E-12 102.8 13.7 52 200-265 24-75 (637)
229 PF01637 Arch_ATPase: Archaeal 98.7 2.6E-08 5.7E-13 95.3 6.0 181 210-411 2-229 (234)
230 PRK08699 DNA polymerase III su 98.7 2E-07 4.3E-12 95.5 12.1 132 238-386 19-183 (325)
231 PRK10365 transcriptional regul 98.6 6.5E-07 1.4E-11 95.1 14.6 210 208-460 140-386 (441)
232 PF01695 IstB_IS21: IstB-like 98.6 3E-08 6.4E-13 92.9 3.6 71 238-310 45-119 (178)
233 PF13173 AAA_14: AAA domain 98.6 1.7E-07 3.6E-12 82.8 7.7 69 241-311 3-73 (128)
234 PF03215 Rad17: Rad17 cell cyc 98.6 7.3E-07 1.6E-11 96.5 14.0 71 195-272 7-77 (519)
235 COG1484 DnaC DNA replication p 98.5 2.7E-07 5.9E-12 91.3 9.2 71 239-311 104-179 (254)
236 KOG1051 Chaperone HSP104 and r 98.5 6.2E-07 1.3E-11 101.0 12.8 129 207-354 562-710 (898)
237 PRK06921 hypothetical protein; 98.5 4.1E-07 8.9E-12 90.6 9.9 68 240-310 117-188 (266)
238 PRK09183 transposase/IS protei 98.5 1.8E-07 3.9E-12 92.9 7.1 74 238-312 100-177 (259)
239 COG3283 TyrR Transcriptional r 98.5 1.8E-07 3.9E-12 94.3 6.9 205 200-438 197-430 (511)
240 PF13401 AAA_22: AAA domain; P 98.5 7.1E-07 1.5E-11 78.2 10.0 73 240-312 4-100 (131)
241 KOG0480 DNA replication licens 98.5 3.9E-07 8.4E-12 97.6 9.5 171 206-391 344-545 (764)
242 PRK13406 bchD magnesium chelat 98.5 1.1E-06 2.4E-11 96.4 12.5 123 241-379 26-173 (584)
243 KOG0478 DNA replication licens 98.4 1.5E-06 3.1E-11 94.0 11.9 176 207-387 429-625 (804)
244 KOG0482 DNA replication licens 98.4 1.5E-06 3.2E-11 91.0 10.8 247 207-466 342-641 (721)
245 PF05729 NACHT: NACHT domain 98.4 3.6E-06 7.9E-11 76.2 11.5 140 242-390 2-165 (166)
246 PRK08939 primosomal protein Dn 98.3 8.3E-07 1.8E-11 90.2 7.0 71 239-311 155-229 (306)
247 PRK07276 DNA polymerase III su 98.3 2.7E-05 5.7E-10 78.4 17.5 170 212-419 7-199 (290)
248 PRK05917 DNA polymerase III su 98.3 6.7E-06 1.5E-10 82.5 12.5 118 238-375 17-154 (290)
249 COG1241 MCM2 Predicted ATPase 98.3 2.3E-06 5E-11 94.3 10.0 167 206-389 285-484 (682)
250 PF12775 AAA_7: P-loop contain 98.3 1.5E-06 3.2E-11 86.9 7.8 137 239-389 32-194 (272)
251 PF12774 AAA_6: Hydrolytic ATP 98.2 1.3E-05 2.8E-10 78.3 12.2 130 241-384 33-176 (231)
252 cd01120 RecA-like_NTPases RecA 98.2 1E-05 2.2E-10 72.7 10.7 72 243-314 2-100 (165)
253 PRK05818 DNA polymerase III su 98.2 2.6E-05 5.6E-10 76.9 14.0 121 238-375 5-147 (261)
254 PRK07132 DNA polymerase III su 98.2 0.00013 2.8E-09 74.0 19.3 126 239-386 17-160 (299)
255 PLN03210 Resistant to P. syrin 98.1 8.5E-05 1.8E-09 88.4 19.2 69 189-267 163-234 (1153)
256 KOG1051 Chaperone HSP104 and r 98.1 2.5E-05 5.5E-10 88.2 13.7 172 196-390 175-365 (898)
257 KOG0477 DNA replication licens 98.1 8.8E-06 1.9E-10 87.2 9.3 175 207-392 449-654 (854)
258 PF00931 NB-ARC: NB-ARC domain 98.1 2.9E-05 6.4E-10 77.3 12.8 157 239-417 18-202 (287)
259 KOG2228 Origin recognition com 98.1 1.3E-05 2.8E-10 80.7 9.9 162 207-388 24-219 (408)
260 PF00493 MCM: MCM2/3/5 family 98.1 4E-07 8.6E-12 93.6 -1.0 168 207-391 24-224 (331)
261 KOG1970 Checkpoint RAD17-RFC c 98.1 7.4E-05 1.6E-09 79.5 15.8 73 195-272 70-142 (634)
262 PF00910 RNA_helicase: RNA hel 98.1 1.2E-05 2.6E-10 68.8 7.8 23 243-265 1-23 (107)
263 PF03969 AFG1_ATPase: AFG1-lik 98.0 1.2E-05 2.6E-10 83.5 8.4 102 237-355 59-168 (362)
264 COG1618 Predicted nucleotide k 98.0 4.5E-05 9.7E-10 69.5 10.5 25 240-264 5-29 (179)
265 TIGR01618 phage_P_loop phage n 98.0 2.8E-05 6E-10 75.3 9.5 111 240-352 12-142 (220)
266 PHA00729 NTP-binding motif con 98.0 2.5E-05 5.5E-10 75.6 9.2 25 241-265 18-42 (226)
267 TIGR02237 recomb_radB DNA repa 98.0 4.9E-05 1.1E-09 72.5 10.8 80 234-313 6-111 (209)
268 KOG2170 ATPase of the AAA+ sup 97.9 0.00011 2.5E-09 73.0 11.7 99 208-314 83-193 (344)
269 PRK00771 signal recognition pa 97.9 0.0016 3.4E-08 69.4 21.0 38 238-275 93-133 (437)
270 COG3267 ExeA Type II secretory 97.9 0.0006 1.3E-08 66.6 15.9 174 242-427 53-255 (269)
271 PHA02624 large T antigen; Prov 97.9 4.2E-05 9E-10 83.1 8.6 123 237-374 428-561 (647)
272 cd01124 KaiC KaiC is a circadi 97.9 0.00015 3.3E-09 67.5 11.3 71 243-313 2-109 (187)
273 PRK09361 radB DNA repair and r 97.8 0.00012 2.7E-09 70.7 10.7 40 235-274 18-60 (225)
274 PF13207 AAA_17: AAA domain; P 97.8 2.2E-05 4.7E-10 67.9 4.3 31 243-273 2-32 (121)
275 PRK15455 PrkA family serine pr 97.8 3E-05 6.5E-10 83.8 6.1 63 205-273 74-137 (644)
276 PF09336 Vps4_C: Vps4 C termin 97.8 1.5E-05 3.3E-10 61.4 2.8 33 450-482 29-62 (62)
277 PRK12723 flagellar biosynthesi 97.8 0.00047 1E-08 72.2 14.1 141 211-366 146-309 (388)
278 PRK11823 DNA repair protein Ra 97.7 0.00027 5.9E-09 75.6 12.5 79 236-314 76-171 (446)
279 PF13191 AAA_16: AAA ATPase do 97.7 8.4E-05 1.8E-09 68.7 7.5 59 209-276 2-63 (185)
280 cd01121 Sms Sms (bacterial rad 97.7 0.00033 7.2E-09 73.1 12.3 78 237-314 79-173 (372)
281 PRK08118 topology modulation p 97.7 8.1E-05 1.7E-09 69.0 6.9 33 242-274 3-35 (167)
282 COG3284 AcoR Transcriptional a 97.7 2.4E-05 5.2E-10 84.6 3.8 201 240-469 336-583 (606)
283 PRK14722 flhF flagellar biosyn 97.7 0.00024 5.2E-09 73.9 10.9 112 237-362 134-266 (374)
284 COG5271 MDN1 AAA ATPase contai 97.7 0.00081 1.7E-08 79.0 15.4 136 239-390 1542-1705(4600)
285 COG1485 Predicted ATPase [Gene 97.7 0.00029 6.4E-09 71.7 10.5 30 237-266 62-91 (367)
286 PRK07261 topology modulation p 97.6 0.00013 2.9E-09 67.7 7.3 40 242-281 2-41 (171)
287 KOG1968 Replication factor C, 97.6 3.9E-05 8.4E-10 87.2 4.0 199 203-420 316-531 (871)
288 PRK14974 cell division protein 97.6 0.0011 2.4E-08 68.2 14.2 36 239-274 139-177 (336)
289 cd01394 radB RadB. The archaea 97.6 0.00044 9.6E-09 66.4 10.7 39 236-274 15-56 (218)
290 PRK00131 aroK shikimate kinase 97.6 6.4E-05 1.4E-09 68.9 4.7 34 238-271 2-35 (175)
291 PRK08533 flagellar accessory p 97.6 0.00051 1.1E-08 67.0 11.2 76 237-312 21-130 (230)
292 PF06309 Torsin: Torsin; Inte 97.6 0.00027 5.8E-09 62.2 7.9 53 207-264 25-77 (127)
293 PF05707 Zot: Zonular occluden 97.6 0.00014 3E-09 68.9 6.7 121 243-373 3-144 (193)
294 PRK06067 flagellar accessory p 97.6 0.00063 1.4E-08 66.2 11.1 78 235-312 20-133 (234)
295 TIGR02012 tigrfam_recA protein 97.5 0.00059 1.3E-08 69.7 10.9 79 236-314 51-148 (321)
296 PF14516 AAA_35: AAA-like doma 97.5 0.0026 5.7E-08 65.4 15.7 174 238-422 29-244 (331)
297 PHA02774 E1; Provisional 97.5 0.00051 1.1E-08 74.5 10.7 36 238-273 432-468 (613)
298 cd01393 recA_like RecA is a b 97.5 0.00063 1.4E-08 65.5 10.4 41 235-275 14-63 (226)
299 cd00983 recA RecA is a bacter 97.5 0.00077 1.7E-08 68.9 11.2 79 236-314 51-148 (325)
300 PF13671 AAA_33: AAA domain; P 97.5 0.00024 5.2E-09 63.1 6.5 34 243-278 2-35 (143)
301 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00075 1.6E-08 65.4 10.4 41 235-275 14-63 (235)
302 COG4650 RtcR Sigma54-dependent 97.4 0.0001 2.2E-09 73.1 3.5 75 240-314 208-297 (531)
303 PRK06762 hypothetical protein; 97.4 0.0005 1.1E-08 63.1 8.1 38 240-277 2-39 (166)
304 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0024 5.2E-08 62.4 13.3 40 234-273 15-57 (237)
305 COG1373 Predicted ATPase (AAA+ 97.4 0.0027 5.9E-08 67.0 14.4 132 242-394 39-186 (398)
306 KOG0481 DNA replication licens 97.4 0.0019 4.1E-08 68.4 12.8 162 207-378 331-517 (729)
307 COG3854 SpoIIIAA ncharacterize 97.4 0.00049 1.1E-08 66.3 7.6 72 239-310 136-229 (308)
308 PRK04296 thymidine kinase; Pro 97.4 0.00085 1.8E-08 63.4 9.2 31 242-272 4-37 (190)
309 KOG2543 Origin recognition com 97.4 0.0022 4.8E-08 65.9 12.1 159 207-389 6-194 (438)
310 PF13604 AAA_30: AAA domain; P 97.3 0.0028 6.1E-08 60.2 12.3 33 241-273 19-54 (196)
311 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00058 1.2E-08 68.1 7.8 92 205-309 58-159 (264)
312 PRK05800 cobU adenosylcobinami 97.3 0.0016 3.5E-08 60.5 10.3 70 242-315 3-92 (170)
313 PRK11889 flhF flagellar biosyn 97.3 0.0069 1.5E-07 63.4 15.7 59 212-273 216-277 (436)
314 cd03283 ABC_MutS-like MutS-lik 97.3 0.002 4.3E-08 61.4 11.1 25 239-263 24-48 (199)
315 cd01131 PilT Pilus retraction 97.3 0.00044 9.4E-09 65.8 6.5 67 242-308 3-83 (198)
316 PRK13947 shikimate kinase; Pro 97.3 0.00021 4.6E-09 65.7 4.2 31 242-272 3-33 (171)
317 PF00437 T2SE: Type II/IV secr 97.3 0.00044 9.6E-09 68.7 6.8 97 203-309 100-207 (270)
318 PRK03839 putative kinase; Prov 97.3 0.0002 4.3E-09 66.8 4.0 31 242-272 2-32 (180)
319 PF06745 KaiC: KaiC; InterPro 97.3 0.0028 6E-08 61.2 12.0 77 235-311 14-127 (226)
320 cd00544 CobU Adenosylcobinamid 97.3 0.0019 4.1E-08 60.0 10.2 72 243-316 2-90 (169)
321 cd00046 DEXDc DEAD-like helica 97.3 0.00098 2.1E-08 57.3 7.9 23 242-264 2-24 (144)
322 cd00464 SK Shikimate kinase (S 97.3 0.00027 5.8E-09 63.6 4.1 31 242-272 1-31 (154)
323 PRK00625 shikimate kinase; Pro 97.3 0.00028 6.1E-09 65.8 4.2 31 242-272 2-32 (173)
324 TIGR00064 ftsY signal recognit 97.3 0.005 1.1E-07 61.6 13.4 37 238-274 70-109 (272)
325 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0029 6.4E-08 60.9 11.2 22 241-262 30-51 (213)
326 PRK09376 rho transcription ter 97.2 0.001 2.2E-08 69.4 8.3 75 241-315 170-272 (416)
327 TIGR02688 conserved hypothetic 97.2 0.00041 8.9E-09 72.8 5.4 62 239-312 208-273 (449)
328 PRK04841 transcriptional regul 97.2 0.0078 1.7E-07 69.7 16.4 152 241-411 33-220 (903)
329 KOG3347 Predicted nucleotide k 97.2 0.00027 5.9E-09 63.6 3.3 32 241-272 8-39 (176)
330 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00032 6.9E-09 65.3 4.0 33 243-277 2-34 (183)
331 TIGR00416 sms DNA repair prote 97.2 0.0025 5.4E-08 68.3 11.3 78 236-313 90-184 (454)
332 KOG2383 Predicted ATPase [Gene 97.2 0.0081 1.8E-07 62.2 14.3 28 237-264 111-138 (467)
333 PF10443 RNA12: RNA12 protein; 97.2 0.027 5.8E-07 59.3 18.4 36 356-391 197-232 (431)
334 PRK14532 adenylate kinase; Pro 97.2 0.00034 7.4E-09 65.6 4.1 35 242-278 2-36 (188)
335 PRK05703 flhF flagellar biosyn 97.2 0.005 1.1E-07 65.5 13.3 37 239-275 220-261 (424)
336 PRK09354 recA recombinase A; P 97.2 0.0033 7.1E-08 64.9 11.3 78 236-313 56-152 (349)
337 KOG0479 DNA replication licens 97.2 0.0011 2.5E-08 71.0 8.0 149 207-372 301-481 (818)
338 PF00448 SRP54: SRP54-type pro 97.2 0.0017 3.6E-08 61.9 8.5 69 240-308 1-92 (196)
339 TIGR02782 TrbB_P P-type conjug 97.2 0.0013 2.7E-08 66.8 8.0 70 240-309 132-214 (299)
340 TIGR03499 FlhF flagellar biosy 97.2 0.0025 5.5E-08 64.1 10.1 63 213-275 167-234 (282)
341 PRK13949 shikimate kinase; Pro 97.1 0.00039 8.5E-09 64.5 3.9 31 242-272 3-33 (169)
342 PRK10536 hypothetical protein; 97.1 0.0044 9.5E-08 61.3 11.4 44 206-263 54-97 (262)
343 PRK04328 hypothetical protein; 97.1 0.0079 1.7E-07 59.3 13.2 39 235-273 18-59 (249)
344 TIGR02858 spore_III_AA stage I 97.1 0.00055 1.2E-08 68.4 5.0 68 241-308 112-203 (270)
345 cd00227 CPT Chloramphenicol (C 97.1 0.00042 9E-09 64.4 3.8 36 241-276 3-38 (175)
346 PRK06581 DNA polymerase III su 97.1 0.0068 1.5E-07 59.2 12.2 147 240-405 15-176 (263)
347 COG4088 Predicted nucleotide k 97.1 0.0019 4.1E-08 61.3 8.0 23 243-265 4-26 (261)
348 PRK13695 putative NTPase; Prov 97.1 0.0033 7.1E-08 58.3 9.7 23 242-264 2-24 (174)
349 COG5271 MDN1 AAA ATPase contai 97.1 0.0027 5.8E-08 74.9 10.6 134 241-389 889-1048(4600)
350 PRK06217 hypothetical protein; 97.1 0.00053 1.1E-08 64.2 4.4 31 242-272 3-33 (183)
351 PRK14531 adenylate kinase; Pro 97.1 0.00057 1.2E-08 64.1 4.5 35 241-277 3-37 (183)
352 cd01122 GP4d_helicase GP4d_hel 97.1 0.0068 1.5E-07 60.1 12.5 37 237-273 27-67 (271)
353 cd02020 CMPK Cytidine monophos 97.1 0.00049 1.1E-08 61.2 3.9 30 243-272 2-31 (147)
354 PRK12724 flagellar biosynthesi 97.1 0.012 2.7E-07 62.1 14.7 36 240-275 223-262 (432)
355 cd02021 GntK Gluconate kinase 97.1 0.0005 1.1E-08 61.9 3.9 28 243-270 2-29 (150)
356 cd03243 ABC_MutS_homologs The 97.1 0.0054 1.2E-07 58.3 11.2 25 238-262 27-51 (202)
357 PF13479 AAA_24: AAA domain 97.1 0.004 8.7E-08 59.9 10.3 68 240-311 3-80 (213)
358 cd01428 ADK Adenylate kinase ( 97.1 0.00051 1.1E-08 64.3 4.0 33 243-277 2-34 (194)
359 PRK13948 shikimate kinase; Pro 97.1 0.00066 1.4E-08 63.9 4.7 35 238-272 8-42 (182)
360 COG0563 Adk Adenylate kinase a 97.1 0.00072 1.6E-08 63.4 4.9 34 242-277 2-35 (178)
361 PRK13900 type IV secretion sys 97.0 0.0015 3.3E-08 67.2 7.6 71 239-309 159-245 (332)
362 cd01128 rho_factor Transcripti 97.0 0.002 4.3E-08 63.7 7.9 28 239-266 15-42 (249)
363 PF04665 Pox_A32: Poxvirus A32 97.0 0.0046 1E-07 60.6 10.4 134 237-388 10-170 (241)
364 PRK14530 adenylate kinase; Pro 97.0 0.00071 1.5E-08 65.0 4.6 30 242-271 5-34 (215)
365 TIGR03878 thermo_KaiC_2 KaiC d 97.0 0.0076 1.6E-07 59.8 12.0 39 236-274 32-73 (259)
366 PRK12726 flagellar biosynthesi 97.0 0.0081 1.8E-07 62.6 12.4 98 211-310 179-296 (407)
367 TIGR01420 pilT_fam pilus retra 97.0 0.0013 2.8E-08 68.0 6.8 70 240-309 122-205 (343)
368 COG1102 Cmk Cytidylate kinase 97.0 0.00061 1.3E-08 62.2 3.6 28 243-270 3-30 (179)
369 PF01745 IPT: Isopentenyl tran 97.0 0.0016 3.4E-08 62.3 6.5 38 242-279 3-40 (233)
370 COG0703 AroK Shikimate kinase 97.0 0.00062 1.3E-08 63.1 3.6 32 241-272 3-34 (172)
371 TIGR01425 SRP54_euk signal rec 97.0 0.037 8E-07 58.8 17.3 71 239-309 99-192 (429)
372 PTZ00202 tuzin; Provisional 97.0 0.02 4.3E-07 60.6 14.9 61 205-274 260-320 (550)
373 smart00534 MUTSac ATPase domai 97.0 0.0087 1.9E-07 56.2 11.4 20 243-262 2-21 (185)
374 PRK06547 hypothetical protein; 97.0 0.00088 1.9E-08 62.4 4.5 35 238-272 13-47 (172)
375 cd02027 APSK Adenosine 5'-phos 97.0 0.0028 6E-08 57.5 7.7 34 243-276 2-38 (149)
376 TIGR01313 therm_gnt_kin carboh 97.0 0.00063 1.4E-08 62.2 3.5 28 243-270 1-28 (163)
377 cd01130 VirB11-like_ATPase Typ 97.0 0.0013 2.9E-08 61.7 5.7 72 238-309 23-110 (186)
378 PTZ00088 adenylate kinase 1; P 97.0 0.0009 2E-08 65.3 4.7 31 241-271 7-37 (229)
379 TIGR02525 plasmid_TraJ plasmid 96.9 0.0013 2.7E-08 68.7 5.9 69 241-309 150-235 (372)
380 COG4619 ABC-type uncharacteriz 96.9 0.0067 1.5E-07 56.1 9.8 28 237-264 26-53 (223)
381 TIGR02236 recomb_radA DNA repa 96.9 0.0063 1.4E-07 61.9 10.8 40 236-275 91-139 (310)
382 PRK05057 aroK shikimate kinase 96.9 0.0011 2.3E-08 61.8 4.7 34 240-273 4-37 (172)
383 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.018 3.9E-07 55.5 13.5 40 235-274 11-53 (224)
384 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0034 7.4E-08 58.8 8.1 72 238-309 23-99 (177)
385 PRK04301 radA DNA repair and r 96.9 0.0053 1.1E-07 62.7 10.2 40 236-275 98-146 (317)
386 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0089 1.9E-07 56.8 11.1 21 241-261 29-49 (200)
387 PRK03731 aroL shikimate kinase 96.9 0.001 2.2E-08 61.3 4.4 32 241-272 3-34 (171)
388 cd03216 ABC_Carb_Monos_I This 96.9 0.0039 8.4E-08 57.3 8.2 73 237-309 23-110 (163)
389 TIGR02238 recomb_DMC1 meiotic 96.9 0.0074 1.6E-07 61.6 10.9 41 235-275 91-140 (313)
390 PRK14528 adenylate kinase; Pro 96.9 0.001 2.2E-08 62.7 4.2 30 242-271 3-32 (186)
391 PRK06696 uridine kinase; Valid 96.9 0.0026 5.5E-08 61.6 7.1 39 239-277 21-62 (223)
392 PRK10416 signal recognition pa 96.9 0.038 8.2E-07 56.6 16.0 61 213-273 86-150 (318)
393 PRK13764 ATPase; Provisional 96.9 0.0014 3E-08 72.2 5.8 70 239-309 256-334 (602)
394 PF12780 AAA_8: P-loop contain 96.9 0.07 1.5E-06 53.3 17.5 89 208-308 9-98 (268)
395 PRK13946 shikimate kinase; Pro 96.9 0.00091 2E-08 62.8 3.9 33 240-272 10-42 (184)
396 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0025 5.5E-08 62.6 7.1 34 243-276 2-38 (249)
397 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.3E-08 61.8 4.2 29 242-270 5-33 (188)
398 PF10236 DAP3: Mitochondrial r 96.9 0.044 9.6E-07 55.9 16.3 107 288-394 142-283 (309)
399 COG2804 PulE Type II secretory 96.9 0.0019 4E-08 68.9 6.4 94 202-309 233-337 (500)
400 PLN02200 adenylate kinase fami 96.9 0.0013 2.8E-08 64.4 4.9 39 238-278 41-79 (234)
401 PLN03187 meiotic recombination 96.8 0.0078 1.7E-07 62.2 10.7 40 236-275 122-170 (344)
402 PF13238 AAA_18: AAA domain; P 96.8 0.00091 2E-08 57.8 3.3 22 243-264 1-22 (129)
403 cd00984 DnaB_C DnaB helicase C 96.8 0.013 2.7E-07 57.1 11.7 38 236-273 9-50 (242)
404 COG2874 FlaH Predicted ATPases 96.8 0.013 2.7E-07 56.2 11.0 119 237-367 25-179 (235)
405 PF13245 AAA_19: Part of AAA d 96.8 0.002 4.4E-08 51.7 4.9 23 242-264 12-35 (76)
406 TIGR02655 circ_KaiC circadian 96.8 0.016 3.5E-07 62.7 13.4 79 235-313 258-367 (484)
407 TIGR02533 type_II_gspE general 96.8 0.0039 8.6E-08 67.4 8.6 94 202-309 217-321 (486)
408 PRK02496 adk adenylate kinase; 96.8 0.0011 2.4E-08 61.9 3.9 30 242-271 3-32 (184)
409 PF07693 KAP_NTPase: KAP famil 96.8 0.037 8E-07 56.1 15.3 30 238-267 18-47 (325)
410 TIGR01351 adk adenylate kinase 96.8 0.0011 2.5E-08 63.4 3.9 29 243-271 2-30 (210)
411 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0054 1.2E-07 55.7 8.1 74 237-310 22-109 (157)
412 PRK13833 conjugal transfer pro 96.8 0.0042 9E-08 63.6 8.0 69 240-308 144-224 (323)
413 PF13481 AAA_25: AAA domain; P 96.8 0.0094 2E-07 55.7 9.9 78 237-314 29-156 (193)
414 PRK04040 adenylate kinase; Pro 96.8 0.0016 3.4E-08 61.6 4.5 30 240-269 2-33 (188)
415 cd03115 SRP The signal recogni 96.8 0.0062 1.3E-07 56.2 8.5 33 243-275 3-38 (173)
416 TIGR00959 ffh signal recogniti 96.8 0.035 7.6E-07 59.1 15.1 72 239-310 98-193 (428)
417 PF09848 DUF2075: Uncharacteri 96.8 0.0022 4.8E-08 66.5 6.0 23 242-264 3-25 (352)
418 PRK00279 adk adenylate kinase; 96.8 0.0013 2.9E-08 63.2 4.0 30 242-271 2-31 (215)
419 COG1936 Predicted nucleotide k 96.7 0.001 2.3E-08 61.4 3.0 30 242-272 2-31 (180)
420 smart00487 DEXDc DEAD-like hel 96.7 0.012 2.6E-07 53.7 10.3 24 241-264 25-49 (201)
421 PRK10867 signal recognition pa 96.7 0.031 6.7E-07 59.6 14.4 74 238-311 98-195 (433)
422 PTZ00035 Rad51 protein; Provis 96.7 0.01 2.2E-07 61.3 10.6 41 235-275 113-162 (337)
423 TIGR02239 recomb_RAD51 DNA rep 96.7 0.0077 1.7E-07 61.6 9.6 40 236-275 92-140 (316)
424 PRK08154 anaerobic benzoate ca 96.7 0.0024 5.1E-08 65.1 5.8 36 237-272 130-165 (309)
425 COG4178 ABC-type uncharacteriz 96.7 0.0062 1.3E-07 66.7 9.2 59 10-68 154-223 (604)
426 PRK14527 adenylate kinase; Pro 96.7 0.0013 2.9E-08 61.9 3.6 32 239-270 5-36 (191)
427 PLN02674 adenylate kinase 96.7 0.0018 3.9E-08 63.7 4.6 38 239-278 30-67 (244)
428 PF06414 Zeta_toxin: Zeta toxi 96.7 0.005 1.1E-07 58.5 7.5 43 238-280 13-56 (199)
429 COG1066 Sms Predicted ATP-depe 96.7 0.015 3.1E-07 60.7 11.3 113 237-352 90-219 (456)
430 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.02 4.3E-07 52.7 11.1 28 243-270 5-35 (159)
431 PRK05973 replicative DNA helic 96.7 0.023 4.9E-07 55.7 12.2 40 235-274 59-101 (237)
432 TIGR02788 VirB11 P-type DNA tr 96.7 0.0085 1.8E-07 61.0 9.5 72 238-309 142-228 (308)
433 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0048 1E-07 55.6 6.9 73 237-310 23-99 (144)
434 PHA02530 pseT polynucleotide k 96.7 0.0049 1.1E-07 62.1 7.6 35 241-276 3-37 (300)
435 cd02019 NK Nucleoside/nucleoti 96.7 0.0028 6.1E-08 49.7 4.6 29 243-271 2-31 (69)
436 PF13086 AAA_11: AAA domain; P 96.7 0.0025 5.4E-08 60.7 5.2 22 243-264 20-41 (236)
437 PRK13808 adenylate kinase; Pro 96.7 0.0092 2E-07 61.2 9.6 34 242-277 2-35 (333)
438 cd03238 ABC_UvrA The excision 96.7 0.0066 1.4E-07 56.8 7.9 27 237-263 18-44 (176)
439 PRK13894 conjugal transfer ATP 96.7 0.0057 1.2E-07 62.6 8.1 71 239-309 147-229 (319)
440 PF08303 tRNA_lig_kinase: tRNA 96.7 0.037 7.9E-07 51.0 12.4 133 246-392 5-147 (168)
441 COG5245 DYN1 Dynein, heavy cha 96.6 0.0021 4.5E-08 75.1 5.1 141 237-390 1491-1660(3164)
442 cd01125 repA Hexameric Replica 96.6 0.038 8.3E-07 53.9 13.4 21 243-263 4-24 (239)
443 cd03247 ABCC_cytochrome_bd The 96.6 0.0092 2E-07 55.5 8.6 28 237-264 25-52 (178)
444 TIGR00767 rho transcription te 96.6 0.0069 1.5E-07 63.5 8.4 28 238-265 166-193 (415)
445 PRK10436 hypothetical protein; 96.6 0.0054 1.2E-07 65.8 7.8 94 203-309 194-297 (462)
446 PF00406 ADK: Adenylate kinase 96.6 0.0015 3.3E-08 59.0 3.2 32 245-278 1-32 (151)
447 cd03228 ABCC_MRP_Like The MRP 96.6 0.01 2.2E-07 54.8 8.7 28 237-264 25-52 (171)
448 cd03227 ABC_Class2 ABC-type Cl 96.6 0.014 3E-07 53.6 9.5 25 240-264 21-45 (162)
449 PLN03186 DNA repair protein RA 96.6 0.012 2.6E-07 60.8 10.0 79 236-314 119-233 (342)
450 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0022 4.8E-08 57.2 3.9 30 238-267 20-49 (133)
451 TIGR01448 recD_rel helicase, p 96.6 0.0078 1.7E-07 68.2 9.3 24 241-264 339-362 (720)
452 COG2805 PilT Tfp pilus assembl 96.6 0.003 6.4E-08 63.2 5.1 71 239-309 123-208 (353)
453 PRK13851 type IV secretion sys 96.6 0.0051 1.1E-07 63.6 7.1 72 238-309 160-246 (344)
454 PRK04182 cytidylate kinase; Pr 96.6 0.0021 4.7E-08 59.2 4.0 29 242-270 2-30 (180)
455 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.5 0.017 3.6E-07 54.9 9.9 34 241-274 39-79 (205)
456 PRK12727 flagellar biosynthesi 96.5 0.083 1.8E-06 57.4 16.1 28 237-264 347-374 (559)
457 KOG0058 Peptide exporter, ABC 96.5 0.01 2.2E-07 65.7 9.2 28 237-264 491-518 (716)
458 COG0324 MiaA tRNA delta(2)-iso 96.5 0.0023 5.1E-08 64.7 4.1 39 240-278 3-41 (308)
459 PF13521 AAA_28: AAA domain; P 96.5 0.0023 5.1E-08 58.5 3.8 26 243-269 2-27 (163)
460 PRK01184 hypothetical protein; 96.5 0.0023 5E-08 59.7 3.8 29 242-271 3-31 (184)
461 COG1855 ATPase (PilT family) [ 96.5 0.0025 5.4E-08 66.8 4.3 44 204-264 244-287 (604)
462 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0025 5.3E-08 58.3 3.9 29 243-271 3-31 (171)
463 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.0075 1.6E-07 62.0 7.7 60 206-271 59-120 (358)
464 PF08433 KTI12: Chromatin asso 96.5 0.0054 1.2E-07 61.3 6.5 70 243-313 4-84 (270)
465 TIGR02538 type_IV_pilB type IV 96.5 0.0073 1.6E-07 66.6 8.1 93 204-309 293-395 (564)
466 cd03246 ABCC_Protease_Secretio 96.5 0.016 3.6E-07 53.6 9.2 28 237-264 25-52 (173)
467 TIGR02655 circ_KaiC circadian 96.5 0.021 4.5E-07 61.9 11.3 80 234-313 15-134 (484)
468 PRK08233 hypothetical protein; 96.5 0.0032 6.9E-08 58.2 4.4 32 241-272 4-36 (182)
469 PRK14737 gmk guanylate kinase; 96.5 0.0041 8.8E-08 58.7 5.1 26 239-264 3-28 (186)
470 TIGR02768 TraA_Ti Ti-type conj 96.5 0.0097 2.1E-07 67.7 9.0 33 241-273 369-404 (744)
471 PLN02840 tRNA dimethylallyltra 96.4 0.0024 5.2E-08 67.3 3.7 36 241-276 22-57 (421)
472 PRK14730 coaE dephospho-CoA ki 96.4 0.013 2.8E-07 55.7 8.3 34 242-277 3-36 (195)
473 TIGR00174 miaA tRNA isopenteny 96.4 0.0028 6E-08 63.8 3.9 34 243-276 2-35 (287)
474 PRK09302 circadian clock prote 96.4 0.037 8.1E-07 60.3 13.0 78 236-313 27-144 (509)
475 PRK05541 adenylylsulfate kinas 96.4 0.0039 8.5E-08 57.8 4.6 28 238-265 5-32 (176)
476 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.032 6.9E-07 53.4 11.0 23 240-262 29-51 (204)
477 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.028 6E-07 54.6 10.6 25 238-262 29-53 (222)
478 PRK14526 adenylate kinase; Pro 96.4 0.0034 7.4E-08 60.5 4.2 34 242-277 2-35 (211)
479 KOG3928 Mitochondrial ribosome 96.4 0.037 8.1E-07 57.6 11.8 116 300-419 316-458 (461)
480 PRK09519 recA DNA recombinatio 96.4 0.028 6.1E-07 63.7 11.9 78 236-313 56-152 (790)
481 COG1126 GlnQ ABC-type polar am 96.4 0.015 3.3E-07 55.7 8.4 25 238-262 26-50 (240)
482 TIGR01526 nadR_NMN_Atrans nico 96.4 0.0069 1.5E-07 62.2 6.5 36 241-276 163-198 (325)
483 PRK08099 bifunctional DNA-bind 96.4 0.0075 1.6E-07 63.6 6.9 31 240-270 219-249 (399)
484 cd03214 ABC_Iron-Siderophores_ 96.3 0.011 2.4E-07 55.1 7.2 28 237-264 22-49 (180)
485 PF03266 NTPase_1: NTPase; In 96.3 0.0035 7.6E-08 58.2 3.8 23 242-264 1-23 (168)
486 PF01583 APS_kinase: Adenylyls 96.3 0.005 1.1E-07 56.4 4.7 38 241-278 3-43 (156)
487 PF08423 Rad51: Rad51; InterP 96.3 0.024 5.1E-07 56.3 9.8 113 238-351 36-184 (256)
488 PRK10263 DNA translocase FtsK; 96.3 0.035 7.5E-07 65.4 12.4 75 301-386 1142-1218(1355)
489 PF05970 PIF1: PIF1-like helic 96.3 0.021 4.6E-07 59.5 9.7 27 239-265 21-47 (364)
490 PF05272 VirE: Virulence-assoc 96.3 0.0038 8.3E-08 59.5 3.7 104 238-366 50-162 (198)
491 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.0087 1.9E-07 57.8 6.3 40 236-275 16-58 (229)
492 PRK06995 flhF flagellar biosyn 96.2 0.12 2.6E-06 55.7 15.4 26 239-264 255-280 (484)
493 COG0467 RAD55 RecA-superfamily 96.2 0.0072 1.6E-07 59.8 5.7 41 235-275 18-61 (260)
494 cd03223 ABCD_peroxisomal_ALDP 96.2 0.028 6E-07 51.8 9.2 28 237-264 24-51 (166)
495 PRK00889 adenylylsulfate kinas 96.2 0.0069 1.5E-07 56.0 5.2 36 239-274 3-41 (175)
496 PLN02165 adenylate isopentenyl 96.2 0.0035 7.7E-08 64.2 3.5 34 240-273 43-76 (334)
497 PRK00091 miaA tRNA delta(2)-is 96.2 0.0042 9E-08 63.2 3.9 36 241-276 5-40 (307)
498 PRK14529 adenylate kinase; Pro 96.2 0.0056 1.2E-07 59.4 4.6 34 242-277 2-35 (223)
499 PRK10078 ribose 1,5-bisphospho 96.2 0.0049 1.1E-07 57.8 4.0 29 241-269 3-31 (186)
500 PRK12339 2-phosphoglycerate ki 96.2 0.006 1.3E-07 58.1 4.5 29 240-268 3-31 (197)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-60 Score=475.18 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=284.3
Q ss_pred CCCCCCcHHHH-HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHH
Q 011400 177 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 255 (487)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~ 255 (487)
..+.|.+.... .+++.+.+++....|.++|+||.|++++|+-|+|++.+|+..|++|.++..||+|||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 44556666665 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 256 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 256 LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
||||+|.|++..|+.|+.+.+.++|.|++++.++.+|+.|+.++|++|||||||+|+..|+.. .+|+.+++++++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 7899999999999999
Q ss_pred hcCCcCCCCc---EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 336 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 336 ld~~~~~~~~---VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
|||+...... |+|+++||.||+||+|++|||++.|++|+|+.+.|..+++..+.......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999765544 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh-hhHHHHHHHHHHhchh
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 484 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 484 (487)
||.++|++|++.++||.++.+..+.......+... .+|+++||+.|+++++||++ .++.+|++|.++|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999887766554444444444 68999999999999999999 5799999999999983
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-50 Score=422.46 Aligned_cols=271 Identities=42% Similarity=0.665 Sum_probs=253.9
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+..|+...+.|+++|+||+|++++|++|++.+.+|+++|+-|.++ +.|++|||||||||||||++||++|++++++|+
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 3567778888999999999999999999999999999999999887 799999999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
.|++.++.++|+|++|+.++.+|++|+..+|||||+||||++...|++. .+++..+++++||.+|||+... ..|+||
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~-k~V~Vi 574 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLLTEMDGLEAL-KNVLVI 574 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHHHHccccccc-CcEEEE
Confidence 9999999999999999999999999999999999999999999999743 3378899999999999999765 459999
Q ss_pred EEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 350 AATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 350 atTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
++||+|+.||+|++| ||+..|++++||.+.|.+||+.++++.+...+++++.||+.|+||||+||..+|++|+..+++
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~ 654 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALR 654 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHH
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNAD 480 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~ 480 (487)
+.++ ...|+.+||++|++..+|+.+.. +..|++|.+.
T Consensus 655 e~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 655 ESIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred Hhcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 8663 13489999999999999999975 7999998764
No 3
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-50 Score=386.22 Aligned_cols=298 Identities=49% Similarity=0.839 Sum_probs=266.9
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 184 AETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+...+...+..-+..+.|+++|+||.|++.+|+.|+|.+.+|.+.|++|.....|++++|||||||||||.||+++|.+
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 264 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 264 l~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
.+..|++|+.++++++|.|++++.++.+|+.|+.+.|+||||||||++++.|.+ .+++.++++..+||.+|+|+-...
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e--nEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE--NESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC--CchHHHHHHHHHHHHhhhccccCC
Confidence 999999999999999999999999999999999999999999999999998775 467788999999999999998888
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..|+|+++||-||.||.+++|||+.+|++|+|+...|..+++.++...+.. .+.|+..|+++|+||+|+||.-+++.|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 889999999999999999999999999999999999999999999776654 4568999999999999999999999999
Q ss_pred hHHHHHHHHHh-----hc--hhcc----------------------CCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHH
Q 011400 423 MQPLRRLMVLL-----EG--RQEV----------------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 472 (487)
Q Consensus 423 ~~a~rr~~~~l-----e~--~~~~----------------------~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~ 472 (487)
++.+|+..... .+ .... .+.+.+ -..+||+.||.++|...+|.+.+ ++.
T Consensus 348 mePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 348 MEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLL 426 (439)
T ss_pred hhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHH
Confidence 99999875421 11 0000 011111 13469999999999999999997 589
Q ss_pred HHHHHHHHhchh
Q 011400 473 RYEKFNADYGSE 484 (487)
Q Consensus 473 ~y~~~~~~~g~~ 484 (487)
+.++|.++||.|
T Consensus 427 k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 427 KHEKFTEDFGQE 438 (439)
T ss_pred HHHHHHHhhccC
Confidence 999999999986
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-49 Score=389.84 Aligned_cols=250 Identities=40% Similarity=0.643 Sum_probs=232.2
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
-..+.|.++++||+|+++++++|+|.+.+|+.+|++|..+ +.||+|||||||||||||+||||+|++.+..|+.+.+++
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 3457899999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.+|.|+..+.++.+|..|+.++||||||||||+++.+|.+. .+....-+++.-+||.+|||+...+ .|-||++||+
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR 299 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNR 299 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCC
Confidence 9999999999999999999999999999999999999998653 3344455778888999999997754 4889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
++.|||||+| ||++.|+||+|+.+.|.+||+.|.+++....+++++.+|+.++|+||+||.++|++|++.|+|+-.
T Consensus 300 ~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R-- 377 (406)
T COG1222 300 PDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR-- 377 (406)
T ss_pred ccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999622
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
..||++||.+|.+++..
T Consensus 378 ----------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 378 ----------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ----------------CeecHHHHHHHHHHHHh
Confidence 34899999999998754
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-49 Score=409.73 Aligned_cols=290 Identities=33% Similarity=0.577 Sum_probs=260.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
.+..+..||.....|.++|+||+|+++++.+|..++.+|.++|+.|..+ +..|.|||||||||||||.||||+|+|.+.
T Consensus 492 ~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 492 KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 3445788999999999999999999999999999999999999999887 888999999999999999999999999999
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+|+.|.+.++.++|+|++++.++.+|..|+..+|||||+||+|+|++.|+... ...+.+++++||..|||+..+.+ |
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V 648 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-V 648 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-e
Confidence 99999999999999999999999999999999999999999999999988654 56778999999999999976654 8
Q ss_pred EEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHH
Q 011400 347 FVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKE 420 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~--~~~~~~~~~l~~la~~t~--G~sg~dI~~L~~~ 420 (487)
+||++||+|+.+|+|++| ||+..+++++|+.++|.+||+.+.+ +.....+++++.||+.+. ||||+||..||++
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 999999999999999999 9999999999999999999999998 666778999999999877 9999999999999
Q ss_pred HHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 421 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 421 A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
|+..|+++.+............. .....+|..||++|+++++||+++ +...|+..++.+|
T Consensus 729 Asi~AL~~~~~~~~~~~~~~~~~--~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 729 ASILALRESLFEIDSSEDDVTVR--SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHHHhhccccCccccee--eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 99999998776333221111110 012358999999999999999997 5799999999888
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=406.24 Aligned_cols=284 Identities=32% Similarity=0.549 Sum_probs=260.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
..+.|+++|+||+|++++|.+|.+.+.+|++++++|...+++..|||||||||||||.+|||+|.++...|++|.+.++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlVIatTn~p~ 356 (487)
.+|+|++|++++++|++|+..+|||||+||+|+++++|+..+...+...+++++||.+||++.. ....|+||++||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999998888889999999999999999976 667799999999999
Q ss_pred cccHHHHh--hccccccCCCC-CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 357 ELDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~P-d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t-~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
.||++|+| ||++.++++++ |.+.+..+|+...++.....++++.++|+.+ ..|||+|+..+|.+|++.|++|.+..
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999987 7778999999999999999999999999998 47999999999999999999999887
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
++....-. .+..+....|++|||.+++++.+||+++ ++..|+.....|.
T Consensus 903 ie~g~~~~-~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 903 IESGTISE-EEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhhccccc-cccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 76542211 1122334569999999999999999997 5799999888874
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-45 Score=379.42 Aligned_cols=282 Identities=35% Similarity=0.536 Sum_probs=246.5
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..++++|+||+|++....+|.+++.. +++|+.|..+ +.|++|||||||||||||+||+++|+++++||+.+++.++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34578899999999999999999988 8899988776 899999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC---CCcEEEEEEeCCC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLP 355 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~VlVIatTn~p 355 (487)
.+.|+++++++.+|+.|+.+.|||+||||||++.++|.+.+ .+-.++++.+|+..||++... +..|+||++||+|
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999998754 344689999999999998654 5679999999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.||++|+| ||++.|.+..|+..+|.+||+.++++.....+.++..||+.|.||.|+||.+||.+|+..|++|..+..
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~ 419 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQS 419 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999999988744
Q ss_pred hc--hh----cc-----CCC-----------------------------C----CCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 434 EG--RQ----EV-----APD-----------------------------D----ELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 434 e~--~~----~~-----~~~-----------------------------d----~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
+. .. +. ... + +....-.|+.+||++|+..+|||+..
T Consensus 420 ~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakR 499 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKR 499 (802)
T ss_pred cCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhc
Confidence 31 00 00 000 0 11122358999999999999999987
Q ss_pred h---HHHHHHHHHHhchh
Q 011400 470 H---AHRYEKFNADYGSE 484 (487)
Q Consensus 470 ~---~~~y~~~~~~~g~~ 484 (487)
+ ...-..|.+..+.+
T Consensus 500 EGF~tVPdVtW~dIGaL~ 517 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALE 517 (802)
T ss_pred ccceecCCCChhhcccHH
Confidence 6 35556777766654
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-44 Score=357.88 Aligned_cols=283 Identities=40% Similarity=0.681 Sum_probs=252.8
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
...-.++|+||+|++.++++|++.+.+|+++|++|... ..|++|||||||||||||++|+++|++.+..|+.|+.+.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 34456889999999999999999999999999999543 8899999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC-cEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~-~VlVIatTn~p 355 (487)
.++|.|++++.++.+|..|...+|+||||||+|++...| ...+++....+.++|...+||+..... .|+|+++||+|
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP 241 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRP 241 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCC
Confidence 999999999999999999999999999999999999998 367899999999999999999965554 79999999999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL-- 433 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l-- 433 (487)
.++|+|++||+..++++++|+.++|.+||+-+++......++|+..+|+.|+||||+||.++|+.|+..++|..+..-
T Consensus 242 ~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 242 FDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred ccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred -hchh-ccCCCCCC------CCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhch
Q 011400 434 -EGRQ-EVAPDDEL------PQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGS 483 (487)
Q Consensus 434 -e~~~-~~~~~d~~------~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~ 483 (487)
.... ........ -..++++++||.+|+..+-++...+ ....+.|++.||.
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 0111 01100111 1257899999999999999886643 6889999999985
No 9
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=349.41 Aligned_cols=288 Identities=51% Similarity=0.812 Sum_probs=258.0
Q ss_pred HHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 190 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+.+..++....+.+.|+|+.|++.+|+.+.+.+.+|..++..|..+..+.+++||.||||+|||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 44677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 348 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlV 348 (487)
.++++++.++|+|++++.++.+|..|+..+|+|+||||+|+++.+|. ..+++..+++..+++..+++... ...+|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 45677788999999999998854 4458999
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
|+|||.||.+|++++|||..++++|+|+.+.|..+|+.++...... .+.+++.+++.|+||+++||.++|++|++...+
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999887433 456789999999999999999999999999988
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchh
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSE 484 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~ 484 (487)
...... ..+.. .....++|+..||+.+++.++|+++.. ...|.+|+..||+.
T Consensus 374 ~~~~~~--~~~~~---~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 374 ELGGTT--DLEFI---DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hcccch--hhhhc---chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 754420 01111 112347799999999999999999975 89999999999984
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-40 Score=373.44 Aligned_cols=288 Identities=41% Similarity=0.651 Sum_probs=251.1
Q ss_pred hhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 194 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++.....|.++|+|++|++.+|+.|.+.+.+|+.+++.+... ..+++++|||||||||||++|+++|++++.+|+.++
T Consensus 440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 440 IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3455556788999999999999999999999999999998875 788899999999999999999999999999999999
Q ss_pred cccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 273 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 273 ~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
++++.++|+|++++.++.+|..|+...||||||||+|.+++.++... ......+++++|+..||++... ..++||+||
T Consensus 520 ~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aT 597 (733)
T TIGR01243 520 GPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAAT 597 (733)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeC
Confidence 99999999999999999999999999999999999999998876432 3445678999999999998654 458899999
Q ss_pred CCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 353 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 353 n~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+|+.+|++++| ||+..+++++|+.++|.+||+.+..+.....+.+++.+|+.|+||+|+||..+|++|+..++++..
T Consensus 598 n~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 598 NRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred CChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 999999999999999999999999888888889999999999999999999999999999999876
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhch
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGS 483 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~ 483 (487)
....................|+++||.+|+++++||++++ ...|++|.+.|+.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 678 GSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 4322111100000111234699999999999999999975 7999999999974
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=340.85 Aligned_cols=241 Identities=34% Similarity=0.554 Sum_probs=220.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.+++|+|+-|++++|++|+|.+.. ++.|+.|.++ ..-|+||||.||||||||+|||++|.|.+.||++.+++++-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 367899999999999999997755 7788888877 78899999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
+|...+.++.+|..|+..+||||||||||++.++|.... ....++++++||..|||+.... .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~--~~y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD--QHYAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH--HHHHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999987543 2377999999999999997665 4889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
||.| ||+++|.+|.||..-|.+||+.|+.+.....++|...||+-|.||+|+||.+|++.|+..|...-
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 9999 99999999999999999999999999999999999999999999999999999999998876531
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
...||+.|++.|-.++-
T Consensus 526 ---------a~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 526 ---------AEMVTMKHLEFAKDRIL 542 (752)
T ss_pred ---------cccccHHHHhhhhhhee
Confidence 13489999999887763
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=307.49 Aligned_cols=246 Identities=33% Similarity=0.470 Sum_probs=215.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
..++++|+|++|++++|+..+-+ ...+..|+.|..+ .|++||||||||||||++|+++|++.+.|++.+++.++.+.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli-~~yLenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLI-MEYLENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHH-HHHhhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 34678899999999999987654 4557889988887 46899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
++|...+.++.+++.|+..+|||+||||+|+++-+|.-+.. .+.-..++|.||..|||+... ..|+.|++||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQel-RGDVsEiVNALLTelDgi~en-eGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL-RGDVSEIVNALLTELDGIKEN-EGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHh-cccHHHHHHHHHHhccCcccC-CceEEEeecCChhhcC
Confidence 99999999999999999999999999999999988764332 223467899999999999854 4588999999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhchhc
Q 011400 360 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 360 ~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~-L~~~A~~~a~rr~~~~le~~~~ 438 (487)
+++++||...|+|.+|+.++|.+|++.+++..+...+.+++.+++.|.|+||+||.. +++.|.++|+..-
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--------- 339 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--------- 339 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc---------
Confidence 999999999999999999999999999999999999999999999999999999975 5566666665531
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
...|+.+||++|+++.++...
T Consensus 340 ---------~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 340 ---------REKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ---------hhhhhHHHHHHHHHhhccccC
Confidence 134899999999998776644
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=340.81 Aligned_cols=257 Identities=46% Similarity=0.725 Sum_probs=235.0
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcC-CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
++....+.++|+|++|++.+|+.+++.+.+++.+++.+.. .+.+++++|||||||||||++|+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4555788999999999999999999999999999998887 478889999999999999999999999999999999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.++|+|++++.++.+|..|+..+||||||||+|++.+.++..... ...+++++++.+++++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 99999999999999999999999999999999999999998754332 237899999999999876655 889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~--~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+.+|++++| ||+..+++++||.++|.+|++.++..... ..+.+++.+++.|+||+|+||..+|++|++.++++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999985554 4678899999999999999999999999999998753
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHH
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 477 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~~~y~~~ 477 (487)
...||.+||.+|+++++|++. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 145899999999999999988 8887
No 14
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-38 Score=330.00 Aligned_cols=268 Identities=32% Similarity=0.587 Sum_probs=231.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
..+.|+||+|+.++|+.|.+.+.+|.+||.+|... ++.+.|||||||||||||+||.++|..++..|+.|.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34899999999999999999999999999999876 78889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.|.++..++.+|..|+..+|||||+||+|+++++|+. ...+...+++++|+.+|||...-. .|.|+++|.+|+.+|+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG~Egl~-GV~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDGAEGLD-GVYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhccccccc-eEEEEEecCCccccCH
Confidence 9999999999999999999999999999999999874 345678999999999999997744 4889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
||+| |+++.++-++|+..+|.+|++.+........++|++.+|.+|+||+|+||..|+..|.+.|+.+.++.... ..
T Consensus 819 ALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~-~~ 897 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDE-EG 897 (952)
T ss_pred hhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCc-cc
Confidence 9999 99999999999999999999999988888889999999999999999999999999999999987653321 11
Q ss_pred cCCCCCCCCCCCCCHHHHHHHH--hccCCChhh-hHHHHHHHHHHh
Q 011400 439 VAPDDELPQIGPIRPEDVEIAL--KNTRPSAHL-HAHRYEKFNADY 481 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL--~~~~ps~~~-~~~~y~~~~~~~ 481 (487)
.. ..++...+.... ...+||.++ +...+++.+..|
T Consensus 898 ~~--------p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~ 935 (952)
T KOG0735|consen 898 VV--------PSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQF 935 (952)
T ss_pred cC--------CccchhhhhhhhhccCCCccccccchhhhhhHHHhh
Confidence 11 113333333333 466777776 344444444433
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-38 Score=296.71 Aligned_cols=247 Identities=38% Similarity=0.620 Sum_probs=226.6
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.+.|.+++.|++|++-.|+++++.+.+|+.+.+++... +.||+|||+|||||||||+||+++|+.....|+.+.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 46789999999999999999999999999999999887 89999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
.+|.|+..+.++.+|..|+.+.|+||||||+|+++.+|-+. .+....-++++-+|+++|||+.... +|-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEecCccc
Confidence 99999999999999999999999999999999999988653 3344456788889999999997654 478999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+|++++| |.++.|+||+||..+++-++..+..++....+++++.+..+-+..+++||..+|++|++.|+|...
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999998521
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
-.|...||+++.+..-
T Consensus 382 --------------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred --------------eeeeHHHHHHHHHhhc
Confidence 2378899999987653
No 16
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2e-37 Score=322.77 Aligned_cols=250 Identities=39% Similarity=0.641 Sum_probs=224.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|.++|+||+|++.+|++|++.+.+|+.+++++... +.+++++|||||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 346799999999999999999999999999999998876 7899999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|++++.++.+|..++...|+||||||+|.++.++.+.. .......+++.+++..++++.... .+.||++||++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~ 294 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRA 294 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCc
Confidence 9999999999999999999999999999999999988764322 122344577788999999875544 47889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..|++++|+.++|..||+.++.+.....+.+++.++..|+||+|+||.++|++|++.|+++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998888888999999999999999999999999999999862
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
...|+.+||.+|++++...
T Consensus 371 --------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 --------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------CCccCHHHHHHHHHHHHhc
Confidence 1359999999999998654
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-38 Score=295.97 Aligned_cols=253 Identities=37% Similarity=0.583 Sum_probs=228.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+.+..|..+++-++|++..++++++.+.+|.++|++|..+ +..|+|+|||||||||||.||+++|.+..+.|+.+++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 4557788899999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+..+|.|+..+.++.+|-.|+.++|+|||.||||++...|.++.. ....-++..-+|++++||+.... ++-||.+||+
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk-nikvimatnr 295 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVIMATNR 295 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc-ceEEEEeccc
Confidence 999999999999999999999999999999999999998865332 23334556667899999997554 4778999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
.+-+|++++| |+++.|+||+|+.+.|.+||+.+.++.+....+++..+|....|.+|+++..+|++|.+.|+|+..
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr-- 373 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR-- 373 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh--
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999998522
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
..+|.|||+-|+.++-.-.+
T Consensus 374 ----------------vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 ----------------VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred ----------------ccccHHHHHHHHHHHHhccc
Confidence 46999999999988754333
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-38 Score=302.31 Aligned_cols=248 Identities=36% Similarity=0.607 Sum_probs=224.7
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.-++.|++|++..+++|++.+.+|+.+|++++.. +.||+||+|||+||||||.||+|+|+.....|+.+-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 346788899999999999999999999999999999876 9999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|+..+.++.+|..|..++|+|+||||||++..+|-+..+ .....++..-+||+++||+..++. |-||++||+.
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD-vKvimATnri 334 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD-VKVIMATNRI 334 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC-eEEEEecccc
Confidence 99999999999999999999999999999999999998864322 222334455588999999977655 7899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.|||+|.| |+++.|.|+.||...++.|+..+..++....+++++.+...-+.+||+||.++|.+|.+.|+|...
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR--- 411 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR--- 411 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+|++||.+|.+++-
T Consensus 412 ---------------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 412 ---------------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred ---------------hhccHHHHHHHHHHHH
Confidence 2389999999988764
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-37 Score=334.38 Aligned_cols=246 Identities=38% Similarity=0.602 Sum_probs=221.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+.++|.|+.|++++|++|.|++.. +++|+.|..+ ...|+|+||+||||||||.||||+|.|.+.||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34568999999999999999998765 7788877766 899999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc--cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~--~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
.++|.....++.+|..|+.+.|||+||||||.+...|+. ...........+++|+..||++... ..|+|+++||+|+
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD 461 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence 999999999999999999999999999999999998842 2234455678999999999999766 5689999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
.+|+|++| ||++++++++|+...|.+|++.+++..... .+.++..+|.+|.||+|+||.++|++|+..++|+..
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~--- 538 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL--- 538 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence 99999999 999999999999999999999999888875 667788899999999999999999999999999632
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
..|+..||+.|++++.-
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVIA 555 (774)
T ss_pred ---------------CccchhhHHHHHHHHhc
Confidence 35899999999995543
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=293.06 Aligned_cols=249 Identities=34% Similarity=0.572 Sum_probs=226.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|...++||+|++..+++|.+++.+|+.+++.|..+ +.||+|+|+|||||||||.+||+.|.+.+..|..+-+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 456788899999999999999999999999999999887 8999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+..|.|...+.++..|..|+...|+||||||+|.+..+|.++. ......++..-+|++++||++... .|-||++||+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~-~vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD-RVKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc-ceEEEeecccc
Confidence 9999999999999999999999999999999999999886432 222334555667889999997654 48899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+-+||+|+| |.++.|+||.|+.+.|..|++.+.+++....+++++++|+.|++|+|++..++|-+|++.|+||-.
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--- 397 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--- 397 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---
Confidence 999999998 999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
-.|+.+||.+.+.+++.
T Consensus 398 ---------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ---------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ---------------ccccHHHHHHHHHHHHH
Confidence 23899999999988764
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.5e-36 Score=316.60 Aligned_cols=255 Identities=40% Similarity=0.604 Sum_probs=226.3
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.....|.++|+||+|+++++++|.+.+..|+.+++.|..+ +.++++||||||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3456789999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+...|.|++++.++.+|..++...|+||||||+|.++..+.+... ......+.+..++..+++..... .+.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC-CEEEEEecCC
Confidence 999999999999999999999999999999999999887654322 12234556677888888775443 5889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
++.+|++++| ||+..+++++|+.++|.+||+.++.......+.++..+|..|+||+|+||..+|++|+..++++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999988888778899999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
...|+.+||.+|+.+++++...+
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 13489999999999999987654
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.8e-36 Score=320.56 Aligned_cols=255 Identities=24% Similarity=0.346 Sum_probs=218.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.+..+|+||+|++.+|+.+.+...... .......+.+++|+|||||||||||++|+++|++++.+++.++++.+.++|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 367889999999999999987553321 111223467889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
+|+++..++.+|..++..+||||||||||.++..+.. ..+.+...++++.|+..|++ ....|+||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 9999999999999999999999999999999876433 23445668889999999884 3456899999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~--~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+++| ||+..+++++|+.++|.+||+.++.+.... .+.+++.+|+.|+||||+||+++|.+|+..+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999876533 4678999999999999999999999998877642
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh---hhHHHHHHHHHH
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD 480 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~---~~~~~y~~~~~~ 480 (487)
..++|.+||..|+++++|+.. +++..+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 135899999999999999853 357999999874
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=291.06 Aligned_cols=267 Identities=34% Similarity=0.552 Sum_probs=233.4
Q ss_pred HHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCC
Q 011400 171 ERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPP 249 (487)
Q Consensus 171 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~Gpp 249 (487)
..++.|+.|.... +++-...++.|.++++|++|+.+.++.|++.+..|+.+|+.|..+ +.||+|||+||||
T Consensus 149 yqi~lplppkidp--------svtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygpp 220 (435)
T KOG0729|consen 149 YQIQLPLPPKIDP--------SVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPP 220 (435)
T ss_pred eeEeccCCCCCCC--------ceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCC
Confidence 3455555555443 334344667899999999999999999999999999999999877 8999999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHH
Q 011400 250 GTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRL 328 (487)
Q Consensus 250 GtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i 328 (487)
|||||.+||++|+..+..|+.+-+++++.+|+|+..+.++.+|+.|+..+.||||+||||++.+.|-+. .......++.
T Consensus 221 gtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrt 300 (435)
T KOG0729|consen 221 GTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT 300 (435)
T ss_pred CCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987543 2223334555
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHh
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERT 406 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t 406 (487)
.-+|++++||+..++. +-|+.+||+|+.||++|+| |+++.++|.+||.+-|..|++.+.+.+....++-++-+|..+
T Consensus 301 mleli~qldgfdprgn-ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlc 379 (435)
T KOG0729|consen 301 MLELINQLDGFDPRGN-IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLC 379 (435)
T ss_pred HHHHHHhccCCCCCCC-eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhC
Confidence 5678899999976654 7788999999999999999 999999999999999999999999999998899999999999
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..-+|++|+.+|.+|.+.|+|-.. ...|..||.+|+.++.
T Consensus 380 pnstgaeirsvcteagmfairarr------------------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 380 PNSTGAEIRSVCTEAGMFAIRARR------------------KVATEKDFLDAVNKVV 419 (435)
T ss_pred CCCcchHHHHHHHHhhHHHHHHHh------------------hhhhHHHHHHHHHHHH
Confidence 999999999999999999987321 2368999999998774
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=309.11 Aligned_cols=249 Identities=36% Similarity=0.574 Sum_probs=221.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|..+|+||+|++.++++|.+.+..++.+++++..+ +.+++++|||||||||||++|+++|++++.+|+.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 456788999999999999999999999999999998876 7889999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+|.|+.+..++.+|..+....|+||||||+|.++.++..... ......+.+.+++..++++.... .+.||++||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 99999999999999999999999999999999999987643221 22233456677888888875443 47889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..|+|+.|+.++|.+||+.++.......+++++.++..++||+|+||..+|++|+..|+++-
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999987 99999999999999999999999988888888999999999999999999999999999998852
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
...|+.+||.+|++++..
T Consensus 409 --------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --------------CCccCHHHHHHHHHHHHh
Confidence 134899999999999754
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=313.68 Aligned_cols=245 Identities=38% Similarity=0.582 Sum_probs=222.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.....++|.|+.|.+++|+++.|.+.. ++.|..|..+ ...|+|+||+||||||||+|||++|.+.+.||+.++.++++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 346789999999999999999998765 5566655544 78899999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..|+|.....++.+|.+|+.++|||+||||+|++...|+.+ +..+....+++++|+..||++.. +..|+|+++||+|+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpd 299 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPD 299 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcc
Confidence 99999999999999999999999999999999999988533 44556667899999999999974 45688999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
-+|+||+| ||++++.++.||...|.+|++-+++......++++..+|+.|.||+|+|+.+++++|+..+.|+..
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
..|++.||.+|..++
T Consensus 376 --------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --------------KEITMRDIEEAIDRV 390 (596)
T ss_pred --------------eeEeccchHHHHHHH
Confidence 458999999999887
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.7e-34 Score=310.47 Aligned_cols=248 Identities=37% Similarity=0.573 Sum_probs=217.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...|.++|+||+|++++|+++.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999998765 6777766554 67889999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
+.+.|.+++.++.+|..++...|+||||||+|.+...++... ........+++.|+..||++.... .++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChh
Confidence 999999999999999999999999999999999998876432 223445678899999999886544 488999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+|++++| ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777677889999999999999999999999988776631
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
..+|+.+||..|+.++.+.
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhcc
Confidence 1359999999999987543
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.5e-33 Score=292.00 Aligned_cols=247 Identities=39% Similarity=0.636 Sum_probs=216.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.+.|+||+|+++++++|.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 346789999999999999999999999999999988776 7889999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
...+.|+....++.+|..++...|+||||||+|.+...+..... ......+.+..++..++++... ..+.||+|||++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 99999999999999999999999999999999999876543221 1223345667778888876444 358899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|+++++ ||+..++++.|+.++|.+|++.++.......+.+++.++..++||+|+||..+|++|+..|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999997 99999999999999999999999988777777889999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
...|+.+||.+|+.++
T Consensus 348 --------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 1349999999999875
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.4e-32 Score=292.24 Aligned_cols=272 Identities=29% Similarity=0.490 Sum_probs=217.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------- 267 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~------- 267 (487)
.+....|.++|+||+|++..++++++.+..|+.++++|... +.+++++|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 34567799999999999999999999999999999998765 7889999999999999999999999998654
Q ss_pred ---EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 268 ---FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 268 ---~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
|+.+..+++.++|.|++++.++.+|..++.. .|+||||||+|.++..++... .++..+.++++|+..||++.
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccc
Confidence 5677778889999999999999999988764 699999999999998875432 23345778899999999986
Q ss_pred CCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCC----------CCCCHHHHHHH---
Q 011400 341 QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE----------ESLPYDLLVER--- 405 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~----------~~~~l~~la~~--- 405 (487)
... .++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++...... ...++..+++.
T Consensus 330 ~~~-~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 330 SLD-NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred cCC-ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 543 58899999999999999998 999999999999999999999998642111 01112222221
Q ss_pred --------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 011400 406 --------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 459 (487)
Q Consensus 406 --------------------------t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~A 459 (487)
++.+||++|.++|.+|...++++.+.. ....|+.+|+..|
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~a 474 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLAA 474 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHHH
Confidence 455788888888888888888876521 1135899999999
Q ss_pred HhccCCChh--hhHHHHHHHHHHhch
Q 011400 460 LKNTRPSAH--LHAHRYEKFNADYGS 483 (487)
Q Consensus 460 L~~~~ps~~--~~~~~y~~~~~~~g~ 483 (487)
+......-. +-....++|.+.-|-
T Consensus 475 ~~~e~~~~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 475 VLDEFRESEDLPNTTNPDDWARISGK 500 (512)
T ss_pred HHHhhcccccCCCCCCHHHHhhhhCC
Confidence 987643322 224567789887654
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=294.19 Aligned_cols=256 Identities=34% Similarity=0.560 Sum_probs=232.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
+.+. ++++|+......+++.+.+|+.++..+... .++|+++|+|||||||||.+++++|++.+..++.++++++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999998776 89999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 281 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
.|++++.++..|+.+...+ |++|||||+|.+++++..... ..+++..+++.++|+... ..+++|+++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765332 678999999999999874 45688999999999999
Q ss_pred HHHHh-hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 360 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 360 ~aL~r-Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++++| ||+..+.+..|+..+|.+|++.+.+.+....+.++..+|..+.||+|+|+..+|++|+..+.++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999887899999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchhh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 485 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~ 485 (487)
+++||..|+..++||+..+ ...-..|.+..|-|.
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~ 441 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEE 441 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHH
Confidence 6778888888888887765 344557777776653
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-33 Score=272.06 Aligned_cols=247 Identities=34% Similarity=0.567 Sum_probs=221.4
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.....++|+.+.|+-.+..++.+.+..|+..|++|.+. +.+|.+++||||||||||++|+++|..++..|+.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567899999999999999999999999999999985 99999999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc-cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~-~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
++|.|++.+.++..|..|+...|||||+||||++.+.+.+ .......-++++.+|+++|+++... .+|-+|+|||+|+
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-~rVk~ImatNrpd 282 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-HRVKTIMATNRPD 282 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-ccccEEEecCCcc
Confidence 9999999999999999999999999999999999988743 3334445567777888888888654 4588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.|+++|+| |+++.+++|+|+...|..|++.+..........+.+.+.+.++||.|+|++..|++|.+.+++...
T Consensus 283 tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~---- 358 (388)
T KOG0651|consen 283 TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER---- 358 (388)
T ss_pred ccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh----
Confidence 99999999 999999999999999999999998888888888899999999999999999999999988877422
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+-.|||.+++.++.
T Consensus 359 --------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 --------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred --------------HHHhHHHHHHHHHHHH
Confidence 2367899999988765
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.5e-32 Score=300.33 Aligned_cols=244 Identities=36% Similarity=0.580 Sum_probs=212.9
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+.++|+|++|++++|+++.+.+.. +..++.+... ...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34678999999999999999997755 6667666554 677899999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
.+.|.....++.+|..++...||||||||+|.+...++.. ...+.....+++.|+..+|++... ..++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHh
Confidence 9999888899999999999999999999999998776532 223344567889999999988654 45889999999999
Q ss_pred ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011400 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 358 Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
+|++++| ||+..+.+++|+.++|.+||+.+++......+.++..+|..+.||+|+||..++++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988776777889999999999999999999999998877641
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 436 RQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 436 ~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
...||.+||++|+.++
T Consensus 408 ------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCCcCHHHHHHHHHHH
Confidence 1358999999999987
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=1.6e-31 Score=299.75 Aligned_cols=280 Identities=39% Similarity=0.582 Sum_probs=234.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++.+++.+.+.+.+++.+++.+..+ +.+++++|||||||||||++|+++|++++.+++.+++.++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 477899999999999999999999999999998876 7889999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 359 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld 359 (487)
+.|.++..++.+|..+....|+||||||+|.+.+++.... .+...++.+.|+..++++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 234567889999999988554 4578899999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc--
Q 011400 360 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG-- 435 (487)
Q Consensus 360 ~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~-- 435 (487)
+++++ ||+..+.++.|+.++|.+||+.+........+.+++.+++.+.||+++|+..+|++|+..+++|.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 99999999999999999999999888777778889999999999999999999999999999987642111
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH---HHHHHHHHHhchh
Q 011400 436 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSE 484 (487)
Q Consensus 436 ~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~---~~y~~~~~~~g~~ 484 (487)
.....+.+. .....++.+||..|++.++|+...+. ..-..|.+..|.+
T Consensus 409 ~~~~i~~~~-~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~ 459 (733)
T TIGR01243 409 EAEEIPAEV-LKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLE 459 (733)
T ss_pred ccccccchh-cccccccHHHHHHHHhhccccccchhhccccccchhhcccHH
Confidence 011111111 12235899999999999999975431 2223555555433
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6e-32 Score=299.71 Aligned_cols=265 Identities=34% Similarity=0.591 Sum_probs=228.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
....+.|++|+|++.++.+|+|.+..|+.||+.|..+ +.||+||||+||||||||+.|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 4467889999999999999999999999999999887 9999999999999999999999999988 356777788
Q ss_pred ccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 274 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
++..++|+|+.++.++.+|+.|+..+|+|+|+||||-|++.|.... ......++++||..|||+..++. |+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGldsRgq-VvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDSRGQ-VVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCCCCc-eEEEcccC
Confidence 9999999999999999999999999999999999999999875432 23446788999999999987765 88999999
Q ss_pred CCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 354 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 354 ~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
+|+.+|++++| ||++.++|++|+.+.|.+|+..+..+...... .-++.+|+.+.||.|+||+.||.+|++.+++|.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999998 99999999999999999999999877664322 3367899999999999999999999999999876
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
..+........-+.. ...|..+||..|+.++.|+.+.
T Consensus 495 Pq~y~s~~kl~~d~~--~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVA--LIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred Ceeecccccccccch--hhhhhhHhhhhhhhccCCCCCc
Confidence 655544433322221 1238999999999999888665
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-32 Score=277.80 Aligned_cols=274 Identities=28% Similarity=0.441 Sum_probs=225.9
Q ss_pred CCCCCCCc--ccCcHHH-HHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhC-CcEEEEeccc
Q 011400 201 SPDVKWES--IKGLENA-KRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASS 275 (487)
Q Consensus 201 ~~~~~~~d--i~G~e~~-k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~-~~~i~v~~~~ 275 (487)
.|.-+|++ |+|++.. -+..++++....-.|+..+++ +..-+|+|||||||||||.+||.|..-++ .+--.|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46666777 5788764 345566666666777777766 77789999999999999999999999996 4456789999
Q ss_pred chhhccCCcHHHHHHHHHHHHhc--------CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 276 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~--------~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
+.++|+|+++++++.+|..|... .-.||++||||+++..|++.....+....++++||.-|||+..-+ +++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEE
Confidence 99999999999999999988542 123999999999999999888888899999999999999997654 489
Q ss_pred EEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCC----CCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 348 VLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~----~~~~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
||+-||+.+.+|+||+| ||+.++++.+||+.-|.+|++.+.+++. ...++|++++|..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999876554 34688999999999999999999999999
Q ss_pred HhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhHHHHHHHH
Q 011400 422 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFN 478 (487)
Q Consensus 422 ~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~~~y~~~~ 478 (487)
...|+.|.+..- ......+... +...|+++||..||.+++|++-.....|+.+.
T Consensus 452 ~S~A~nR~vk~~-~~~~~~~~~~--e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 452 QSFAMNRHVKAG-GKVEVDPVAI--ENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhhhccC-cceecCchhh--hheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 999999987543 2222222221 22459999999999999999875544444443
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.1e-30 Score=285.83 Aligned_cols=247 Identities=34% Similarity=0.511 Sum_probs=214.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.....|+|+.|.+..++++.+.+... ..+..+... ...++|++|+||||||||+++++++++++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 34567999999999999999988764 344444333 5667899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..++...||||||||+|.++..+... ...+....+++++|+..||++... ..++||+|||+|+.+
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~l 303 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVL 303 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhc
Confidence 999999999999999999999999999999999877542 223344567899999999988654 358899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||++.+.+++|+.++|.+||+.++.......+.++..+++.|.||+|+||.++|++|+..++++.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~------- 376 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------- 376 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 999998 99999999999999999999999998888888899999999999999999999999999987641
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~ 467 (487)
...|+.+||++|+.++.++.
T Consensus 377 -----------~~~i~~~d~~~a~~~v~~g~ 396 (644)
T PRK10733 377 -----------KRVVSMVEFEKAKDKIMMGA 396 (644)
T ss_pred -----------CCcccHHHHHHHHHHHhccc
Confidence 13589999999998886643
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=7.7e-30 Score=293.19 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=169.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc----------cC------------------------
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~----------~g------------------------ 282 (487)
+.+|+||||+||||||||+|||++|.++++||+.|+++++...+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 68899999999999999999999999999999999999988654 11
Q ss_pred -------CcH--HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--CCCCcEEEEEE
Q 011400 283 -------DSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 351 (487)
Q Consensus 283 -------~se--~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~~~~VlVIat 351 (487)
..+ ..++.+|+.|+.++||||||||||+++.+.. ....+++|+..|++.. .....|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 122 2378899999999999999999999976511 1234788999999763 23456999999
Q ss_pred eCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhC--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 352 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 352 Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l--~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
||+|+.||+||+| ||++.|.++.|+..+|.+++..++ ++..... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887653 2333332 3578999999999999999999999999999
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
++.. ..|+.+||+.|+.++.+.
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 348999999999977544
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.6e-28 Score=247.70 Aligned_cols=220 Identities=19% Similarity=0.185 Sum_probs=162.9
Q ss_pred CCCCCCcc-cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESI-KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di-~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
...+|+.+ .|+--.+.-+...+.. +...-+....+.+|++++||||||||||++|+++|++++.+++.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~h-i~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVH-IAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHH-HHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34557777 4444444433333321 111111112368999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHH-HHHHHHHhcCCc-----------CCC
Q 011400 281 RGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSD 343 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i-~~~Ll~~ld~~~-----------~~~ 343 (487)
+|++++.++.+|..|+. .+||||||||||++++.+.+. ......++ ..+|+..+|+.. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999976 469999999999999987632 23333444 579999988631 234
Q ss_pred CcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLV 417 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L 417 (487)
..|+||+|||+|+.||++|+| ||+..+ ..|+.++|.+||+.+++..... ..++..|++.+.| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 569999999999999999999 999864 5899999999999999876554 4566667777666 344433344
Q ss_pred HHHHHhHHHH
Q 011400 418 SKEAAMQPLR 427 (487)
Q Consensus 418 ~~~A~~~a~r 427 (487)
..++...-+.
T Consensus 344 yd~~v~~~i~ 353 (413)
T PLN00020 344 YDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 38
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-23 Score=223.82 Aligned_cols=280 Identities=21% Similarity=0.165 Sum_probs=206.4
Q ss_pred CCccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC
Q 011400 157 GSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~ 236 (487)
.++...+++++|+++.++.||.........-..++.+. -.|+.|++++|+++.|.+.........
T Consensus 284 ~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iL-----------d~dHYGLekVKeRIlEyLAV~~l~~~~---- 348 (782)
T COG0466 284 PMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKIL-----------DKDHYGLEKVKERILEYLAVQKLTKKL---- 348 (782)
T ss_pred CCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHh-----------cccccCchhHHHHHHHHHHHHHHhccC----
Confidence 34568899999999999999988877766666666665 478999999999999999776544332
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
...-+||+||||+|||+|+++||+.+++.|+.++...+.+ .|+|.....+-+-+..+....| +++|||
T Consensus 349 --kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDE 425 (782)
T COG0466 349 --KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDE 425 (782)
T ss_pred --CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeec
Confidence 2245899999999999999999999999999999877654 3889999999888999999888 999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC------------CCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------------~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
||++..+....+. +.||+.+|.-++ .-..|++|+|+|..+.++.+|++|+ .+|.++-+
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgY 495 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGY 495 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCC
Confidence 9999876443222 236666663322 2256999999999999999999999 45999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCC-CCCCH
Q 011400 376 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQI-GPIRP 453 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~-~~It~ 453 (487)
+.+|..+|.+.|+-....... ..-.+ ...++..--.-|+.++++|+.+.++|.+..+.+............. ..|+.
T Consensus 496 t~~EKl~IAk~~LiPk~~~~~gL~~~e-l~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~ 574 (782)
T COG0466 496 TEDEKLEIAKRHLIPKQLKEHGLKKGE-LTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDE 574 (782)
T ss_pred ChHHHHHHHHHhcchHHHHHcCCCccc-eeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCH
Confidence 999999999999844332111 00000 0111111123466778899999999988877665432111111112 36899
Q ss_pred HHHHHHHhccCC
Q 011400 454 EDVEIALKNTRP 465 (487)
Q Consensus 454 eD~~~AL~~~~p 465 (487)
.++.+.|...+-
T Consensus 575 ~~l~~yLG~~~f 586 (782)
T COG0466 575 KNLKKYLGVPVF 586 (782)
T ss_pred HHHHHHhCCccc
Confidence 999999986553
No 39
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-22 Score=214.70 Aligned_cols=250 Identities=20% Similarity=0.192 Sum_probs=184.9
Q ss_pred CccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCC
Q 011400 158 STCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLL 237 (487)
Q Consensus 158 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~ 237 (487)
+++.-.+.+||+++....||-....+...-..++.+. -+|++|++++|+++.|++..-..+..
T Consensus 373 ~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iL-----------deDHYgm~dVKeRILEfiAV~kLrgs------ 435 (906)
T KOG2004|consen 373 SSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEIL-----------DEDHYGMEDVKERILEFIAVGKLRGS------ 435 (906)
T ss_pred cccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhh-----------cccccchHHHHHHHHHHHHHHhhccc------
Confidence 3456678899999999999977766554444454444 47999999999999999977554333
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
..++-++|+||||+|||+++++||..+|+.|+.++...+.+ .|+|....++-+.++......| +++|||+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEv 514 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEV 514 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehh
Confidence 23455899999999999999999999999999999876653 3889999999999999998887 9999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------------CCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLT------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd 376 (487)
|++...-+. ..+ +.||+.+|... -.-..|++|||+|..+.|+++|++|++ .|.++-+.
T Consensus 515 DKlG~g~qG--DPa-------sALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv 584 (906)
T KOG2004|consen 515 DKLGSGHQG--DPA-------SALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYV 584 (906)
T ss_pred hhhCCCCCC--ChH-------HHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCcc
Confidence 999843222 111 23556655332 223569999999999999999999995 49999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011400 377 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 377 ~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
.+|..+|.+.||-........--.+-++..+...-.-|+.+|++|+.+++.|.+..+.+
T Consensus 585 ~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 585 AEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999855433211111111222222233457778888888888777665543
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.5e-22 Score=199.56 Aligned_cols=251 Identities=24% Similarity=0.339 Sum_probs=180.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcH-HH--HHHHHHHh-----hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhh
Q 011400 162 NGVLANVINERLQKPLLPNFDSA-ET--RALAESLC-----RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 233 (487)
Q Consensus 162 ~~~~~~~~~~~~~k~~~~~~~~~-~~--~~~~~~~~-----~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~ 233 (487)
..+.+.+++.++++|.+---.+- .. ....+.+. .......++-.|++|+-...++++|..+....-. ....
T Consensus 302 ~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaN-TK~h 380 (630)
T KOG0742|consen 302 TLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATAN-TKKH 380 (630)
T ss_pred chhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcc-cccc
Confidence 45788899999999854321110 00 00000111 1112234556699999999999999886644322 1111
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHH
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAII 312 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~ 312 (487)
-.|-++||||||||||||++|+.||...|..+..+.+.++..... +.-..+..+|+-++. ...-+|||||+|.++
T Consensus 381 ---~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAFL 456 (630)
T KOG0742|consen 381 ---QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFL 456 (630)
T ss_pred ---cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch-HHHHHHHHHHHHHhhcccceEEEehhhHHHH
Confidence 246689999999999999999999999999999999888754432 344567788877765 345689999999999
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
..|.. ...++..+..++.||..-.+ ....++++.+||+|.++|.++-+||+..++||+|..++|..+|..|+.++.
T Consensus 457 ceRnk-tymSEaqRsaLNAlLfRTGd---qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 457 CERNK-TYMSEAQRSALNALLFRTGD---QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred HHhch-hhhcHHHHHHHHHHHHHhcc---cccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 98754 44567778889998876652 233466778999999999999999999999999999999999999885443
Q ss_pred CCC-----------------------C----CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 393 GEE-----------------------S----LPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 393 ~~~-----------------------~----~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
... . ..+.+.|+.|+||||++|..|+.-.
T Consensus 533 ~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 533 LKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred cCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 210 0 0145688999999999999887643
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=5.8e-22 Score=198.81 Aligned_cols=215 Identities=20% Similarity=0.250 Sum_probs=158.7
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCC-C---CCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL-L---SPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~---~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
+++++|++.+|++|.+++.+.. .++..... . .++.+++|+||||||||++|+++|+.+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 4689999999999999886633 33333222 2 234569999999999999999999976 2368999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++.+.|.|+++.....+++.+. ++||||||+|.+...+. ...........|+..|+... ..++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~~---~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQR---DDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcCC---CCEEEEEeCCc
Confidence 9999999998888888887764 38999999999865322 12234667788888887432 33666666653
Q ss_pred CC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHH------hcCCc-HHHHHHHHHHH
Q 011400 355 PW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEA 421 (487)
Q Consensus 355 p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~------t~G~s-g~dI~~L~~~A 421 (487)
.. .+++++++||+..+.|+.|+.+++.+|++.++.......... ...+... ...|. ++++++++..+
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 21 246899999999999999999999999999997655432222 2223332 13344 79999999999
Q ss_pred HhHHHHHHHH
Q 011400 422 AMQPLRRLMV 431 (487)
Q Consensus 422 ~~~a~rr~~~ 431 (487)
..+...|+..
T Consensus 251 ~~~~~~r~~~ 260 (287)
T CHL00181 251 RMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHc
Confidence 9988888764
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=1e-21 Score=194.75 Aligned_cols=214 Identities=18% Similarity=0.185 Sum_probs=155.5
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCC---CCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 275 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~---~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~ 275 (487)
+++++|++.+|++|.+.+.++.........+ .+...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999988776543333332 2334679999999999999999999875 24788999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.|+|++...++.+|..+. ++||||||+|.|.... +.......++.|+..++.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999999999988764 4899999999996421 1122355677788888743 2234444444322
Q ss_pred -----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhc---------CCcHHHHHHHHHH
Q 011400 356 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTE---------GYSGSDIRLVSKE 420 (487)
Q Consensus 356 -----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~---------G~sg~dI~~L~~~ 420 (487)
..+++++++||...+.++.++.+++.+|++.++.......+.+ ++.+++... .-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999988899999999999999999987654432222 344433221 2356778888888
Q ss_pred HHhHHHHHHH
Q 011400 421 AAMQPLRRLM 430 (487)
Q Consensus 421 A~~~a~rr~~ 430 (487)
|......|.+
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 7777666654
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=2.7e-21 Score=193.85 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=167.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC-CC---CCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEeccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LL---SPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~---~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~v~~~~ 275 (487)
++++|++++|++|.+++.+.. .++.+.. .+ .+..+++|+||||||||++|+++|+.+. .+++.+++.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 369999999999999887733 3333332 22 3456899999999999999999998772 3799999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.+.|+++..+..+|+.+.. ++|||||++.+...+.+ ......+.+.|+..|+.. ...++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~ 170 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKD 170 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 9999999988888888887643 89999999998643221 223456777888888733 2346666666543
Q ss_pred --C---cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHh------cC-CcHHHHHHHHHHHH
Q 011400 356 --W---ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------EG-YSGSDIRLVSKEAA 422 (487)
Q Consensus 356 --~---~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t------~G-~sg~dI~~L~~~A~ 422 (487)
+ .+++++++||...+.|+.++.+++..|++.++.......+.+ ++.+.... +. -+++++++++..+.
T Consensus 171 ~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 171 RMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 2 258999999999999999999999999999997754332222 23333331 11 24788999999998
Q ss_pred hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHH
Q 011400 423 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 459 (487)
Q Consensus 423 ~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~A 459 (487)
.....|+..... ...+.+ ....|+.+|+..+
T Consensus 251 ~~~~~r~~~~~~---~~~~~~---~~~~~~~~d~~~~ 281 (284)
T TIGR02880 251 LRQANRLFCDLD---RVLDKS---DLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHhcCcC---CCCCHH---HHhCCCHHHHhhc
Confidence 887777654211 111111 1245788887654
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=190.73 Aligned_cols=184 Identities=30% Similarity=0.444 Sum_probs=151.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhc--CCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~--~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~~~ 274 (487)
|+.++--..+|++|...+...+...+... .++.-.+-+||+||||||||+|+|++|+.+. ..++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 88888888999999998876665554322 2345556799999999999999999999883 457899999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhc---CC--cEEEechhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHH---AP--STIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~---~p--~IL~IDEiD~L~~~r~~~--~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
.+.++|.+++.+.+..+|.+.... .. ..++|||+++|...|... ..+....-++++.++.++|.+... .+|+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nvl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNVL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCEE
Confidence 999999999999999999887653 12 256789999999988532 334445678999999999988654 4588
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
+++|+|-.+.+|.|+.+|-+...++++|+...+.+|++.++.+
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987643
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.6e-21 Score=169.96 Aligned_cols=130 Identities=41% Similarity=0.662 Sum_probs=117.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchh
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+...+.+..+|..+.... |+||||||+|.+.+.. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 699999999999999999999999999999999998999999999999999999887 9999999999999886 2234
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHH-hhccccccCCC
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 374 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~-rRf~~~i~~~~ 374 (487)
......+.+.|+..++........++||++||.++.++++++ +||+..+++++
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 556678889999999988777677999999999999999999 99999988764
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=9.2e-21 Score=202.95 Aligned_cols=240 Identities=21% Similarity=0.249 Sum_probs=195.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
...+||+|+||||||++++++|+++|++++.++|.++.+...+.++..+..+|..++...|+|||+-++|.+..++.+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-- 508 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-- 508 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC--
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999855432
Q ss_pred hhhHHHHHHHHHHHHH--hcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 011400 320 SEHEASRRLKTELLIQ--MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL 397 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~--ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~ 397 (487)
....++...+-.. .+....+...++||++++..+.+++.+++-|..++.++.|+.++|.+||+.++.......++
T Consensus 509 ---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v 585 (953)
T KOG0736|consen 509 ---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV 585 (953)
T ss_pred ---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH
Confidence 2223333333222 34445566779999999999999999999999999999999999999999999999988889
Q ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch--hccCCCCCCCCCCCCCHHHHHHHHhccCCChhhhH----
Q 011400 398 PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR--QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---- 471 (487)
Q Consensus 398 ~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~--~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~~---- 471 (487)
.+..+|.+|.||+.+|+..++......+..+..+..... .+............++++||.+|+.++|...+..+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 999999999999999999999998666665554433111 11112223344567999999999999998877653
Q ss_pred HHHHHHHHHhchh
Q 011400 472 HRYEKFNADYGSE 484 (487)
Q Consensus 472 ~~y~~~~~~~g~~ 484 (487)
.+-..|.+..|-|
T Consensus 666 IPnV~WdDVGGLe 678 (953)
T KOG0736|consen 666 IPNVSWDDVGGLE 678 (953)
T ss_pred CCccchhcccCHH
Confidence 5566888888765
No 47
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.1e-20 Score=191.90 Aligned_cols=225 Identities=23% Similarity=0.349 Sum_probs=175.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCC-eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccC
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 282 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~-~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g 282 (487)
-+|+.++-..+.|++|.+.+..+....+++.+...++ ||.|||||||||||+++.|+|++++..++.+..++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 6788999999999999999999999999999887676 68999999999999999999999999999998877632
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch---hh--HHHHHHHHHHHHHhcCCcCCC-CcEEEEEEeCCCC
Q 011400 283 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS---EH--EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLPW 356 (487)
Q Consensus 283 ~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~---~~--~~~~~i~~~Ll~~ld~~~~~~-~~VlVIatTn~p~ 356 (487)
... ++.++..+... +||+|+|||.-+.-+..... .. .....+++.||+.+||+.... .--+||.|||.++
T Consensus 274 -n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 222 66666554443 79999999987653322111 11 124567889999999996544 3455788999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHHH
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRRL 429 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G--~sg~dI~~-L~~~--A~~~a~rr~ 429 (487)
.|||||+| |++.+|+++.-+.++-+.++..++.... .+.-++++.+..++ .||+|+.. ++.. .+..+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999 9999999999999999999999996533 23335556666555 59999975 3333 577888888
Q ss_pred HHHhhchhc
Q 011400 430 MVLLEGRQE 438 (487)
Q Consensus 430 ~~~le~~~~ 438 (487)
++.++....
T Consensus 428 v~~l~~~~~ 436 (457)
T KOG0743|consen 428 VEALESKKE 436 (457)
T ss_pred HHHHHhhhh
Confidence 877765543
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.6e-20 Score=196.02 Aligned_cols=219 Identities=23% Similarity=0.278 Sum_probs=175.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+.++||+||+|||||.||+++++++. .++..++|+.+.........+.+..+|..+.+++|+||++|++|.|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3446899999999999999999999884 567789999998777777888899999999999999999999999998
Q ss_pred hhcccchhhH-HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCC
Q 011400 314 QRGEARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 314 ~r~~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
...+..++.. ...++...+-+.+..+...+..+.+|++.+....+++.|.+ +|+.++.++.|+..+|.+||+..+.+
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 4333223333 33444443435555556667778999999999999998887 89999999999999999999999877
Q ss_pred CCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 391 QTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 391 ~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.... ...+++-++..|+||...|+..++.+|...++...+. .....+|.++|.++|+.+.|....
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris--------------~~~klltke~f~ksL~~F~P~aLR 654 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS--------------NGPKLLTKELFEKSLKDFVPLALR 654 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc--------------cCcccchHHHHHHHHHhcChHHhh
Confidence 6532 2345677999999999999999999999998854321 111258999999999999998775
Q ss_pred h
Q 011400 470 H 470 (487)
Q Consensus 470 ~ 470 (487)
.
T Consensus 655 ~ 655 (952)
T KOG0735|consen 655 G 655 (952)
T ss_pred h
Confidence 4
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.83 E-value=3.8e-20 Score=208.80 Aligned_cols=202 Identities=23% Similarity=0.193 Sum_probs=148.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCC
Q 011400 159 TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~ 238 (487)
+...++.+++++.....||............++... -++++|++.+|+.+.+++........ .
T Consensus 283 ~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l-----------~~~~~G~~~~k~~i~~~~~~~~~~~~------~ 345 (775)
T TIGR00763 283 SSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEIL-----------DEDHYGLKKVKERILEYLAVQKLRGK------M 345 (775)
T ss_pred CchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHh-----------hhhcCChHHHHHHHHHHHHHHHhhcC------C
Confidence 356778899999999999876544322222222211 35699999999999998866543221 1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch---------hhccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~---------~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...++||+||||||||++|+++|+.++.+++.++++.+. ..|.|.....+...|..+....| ||||||||
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEid 424 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEID 424 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechh
Confidence 234799999999999999999999999999999876542 24677777777778877766665 89999999
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCC------------cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCH
Q 011400 310 AIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 377 (487)
Q Consensus 310 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ 377 (487)
.+.++.+.. ..+.|+..+|.. ......+++|+|||.++.+++++++||. .+.++.|+.
T Consensus 425 k~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~ 494 (775)
T TIGR00763 425 KIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTE 494 (775)
T ss_pred hcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCH
Confidence 998643211 123455555521 1112468889999999999999999995 689999999
Q ss_pred HHHHHHHHHhC
Q 011400 378 EARRAMFESLL 388 (487)
Q Consensus 378 eeR~~IL~~~l 388 (487)
+++.+|++.++
T Consensus 495 ~e~~~I~~~~l 505 (775)
T TIGR00763 495 EEKLEIAKKYL 505 (775)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=5.3e-19 Score=168.50 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=122.6
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.++.+|+|++|+++++..+.-++.....+. .+..++|||||||+||||||+.||++++.++..+++..+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 456789999999999999987775543322 23468999999999999999999999999999988765421
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-----CC----------Cc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----SD----------EL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-----~~----------~~ 345 (487)
...+..++.... ...|||||||+.+... ....|+..|++..- .+ .+
T Consensus 89 ----~~dl~~il~~l~--~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ----AGDLAAILTNLK--EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----HHHHHHHHHhcC--CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 122333343332 3479999999998543 33447777775321 11 24
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVS 418 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G~sg~dI~~L~ 418 (487)
.-+|++|++...+.++|++||.....+..++.++..+|++.........-+. ...++|.++.|- ++-...++
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt-PRiAnrll 222 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT-PRIANRLL 222 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS-HHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC-hHHHHHHH
Confidence 6678999999999999999999988999999999999999887665554332 256688888874 44333333
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.3e-18 Score=193.38 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=167.9
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+... ...+++|+||||||||++|+++|+.+
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~ 231 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGK 231 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 34456666666667778999999999999888776432 34679999999999999999999987
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+..++.++++.+. .+|.|+.++.++.+++.+....|+||||||+|.|.+.......... ..+.|...+
T Consensus 232 ~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l 307 (731)
T TIGR02639 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPAL 307 (731)
T ss_pred CchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHH
Confidence 7789999988887 4789999999999999998878899999999999876432221111 222233333
Q ss_pred cCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-----CCCCHHHHHHHh
Q 011400 337 DGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-----~~~~l~~la~~t 406 (487)
. .+.+.+|++||.. ...|+++.|||. .+.++.|+.+++.+||+......... .+..+..++..+
T Consensus 308 ~-----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls 381 (731)
T TIGR02639 308 S-----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELS 381 (731)
T ss_pred h-----CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhh
Confidence 2 2347788888863 357999999997 59999999999999999776543221 122345566666
Q ss_pred cCCcHHH-----HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EGYSGSD-----IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G~sg~d-----I~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..|-+.. --.++.+|+... + ..+.. .....|+.+|+..++..+.
T Consensus 382 ~ryi~~r~~P~kai~lld~a~a~~--~----------~~~~~--~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 382 ARYINDRFLPDKAIDVIDEAGASF--R----------LRPKA--KKKANVSVKDIENVVAKMA 430 (731)
T ss_pred hcccccccCCHHHHHHHHHhhhhh--h----------cCccc--ccccccCHHHHHHHHHHHh
Confidence 6554321 122333333210 0 00000 0124589999999999884
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.78 E-value=9.4e-18 Score=169.58 Aligned_cols=212 Identities=17% Similarity=0.129 Sum_probs=143.8
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
+|++++|++++++.|..++......+ ..+.+++|+||||||||++|+++|++++.++..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 58999999999999999885433221 24567999999999999999999999998877665443211
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCCcEEEE
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 349 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~VlVI 349 (487)
...+...+... ..+.+|||||+|.+..... ..|+..+++.. .....+.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11222222222 3457999999999864321 11333332111 111236788
Q ss_pred EEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011400 350 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 350 atTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
++|+++..+++++++||...+.++.|+.++..++++..+.......+ ..++.+++.+.|+. +.+..++..++..+...
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR 212 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc
Confidence 89999999999999999888899999999999999988765443322 33677888888866 55566666554332211
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 429 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 429 ~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
....|+.+++..++..+
T Consensus 213 ------------------~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 213 ------------------GQKIINRDIALKALEML 229 (305)
T ss_pred ------------------CCCCcCHHHHHHHHHHh
Confidence 01236777777777764
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=6.6e-18 Score=171.08 Aligned_cols=212 Identities=26% Similarity=0.357 Sum_probs=141.0
Q ss_pred CCCCCCCcccCcHHHH---HHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k---~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
-++.+++|++|+++.. +-|...+.. ....+++|||||||||||+|+.||+..+.+|..+++..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 3567799999999876 345555533 23367999999999999999999999999999998754
Q ss_pred hhccCCcHHHHHHHHHHHHhcC----CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 278 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~----p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
...+.++.+++.++... -.|||||||+.+-...+ ..||-.++ .+..++|-+||.
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-------------D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-------------DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-------------hhhhhhhc----CCeEEEEeccCC
Confidence 35577888998886543 36999999999864432 23666665 334444445555
Q ss_pred CC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC--CCC-CCC-----CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 354 LP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--TGE-ESL-----PYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 354 ~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~--~~~-~~~-----~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+| ..+++++++|. .++.+.+.+.++..+++...+... ... ..+ .++.++..+. +
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~----------------G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSN----------------G 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcC----------------c
Confidence 55 68999999999 458888889999998888843222 221 011 1233333333 3
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 425 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 425 a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
..|++++.+|.......... .++.+++++.+.+-.+.....
T Consensus 205 D~R~aLN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk~ 245 (436)
T COG2256 205 DARRALNLLELAALSAEPDE-----VLILELLEEILQRRSARFDKD 245 (436)
T ss_pred hHHHHHHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCCC
Confidence 33444444443332221111 345888888888877665544
No 54
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=2e-17 Score=169.28 Aligned_cols=219 Identities=18% Similarity=0.127 Sum_probs=151.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
.++.+|++++|.++.++.+...+...... ..++.+++|+||||||||++|+++|++++..+..+++..+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~--- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE--- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc---
Confidence 34568999999999999999888543221 13567899999999999999999999999988777655432
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCCc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~~ 345 (487)
....+..++... ..++||||||+|.+..... +.+...++... .....
T Consensus 89 ---~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 ---KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-------------EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred ---ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH-------------HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 122333444332 3468999999999854311 11222332110 01123
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+.+|++|+++..+++++++||...+.++.|+.+++.+|++..........+ ..++.+++.+.|.. +.+..+++.+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 667889999999999999999888999999999999999988766554432 23677888888865 5555566554433
Q ss_pred HHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 425 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 425 a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
+..+ ....|+.+++..++..+...
T Consensus 230 a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 230 AQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 3221 11247888888888776544
No 55
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.77 E-value=3.1e-17 Score=184.27 Aligned_cols=268 Identities=18% Similarity=0.175 Sum_probs=178.2
Q ss_pred CCccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC
Q 011400 157 GSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 236 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~ 236 (487)
..++..++.++|+++.+..||.....+......++.+. -.+++|++++|+++.+++........
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l-----------~~~~~g~~~vK~~i~~~l~~~~~~~~----- 346 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEIL-----------DTDHYGLERVKDRILEYLAVQSRVNK----- 346 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHh-----------hhhccCHHHHHHHHHHHHHHHHhccc-----
Confidence 34567889999999999999987766654444444443 35699999999999998875433221
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
.....++|+||||+|||++++.+|+.++.+++.++.+...+ .|.|.....+...+..+....| ||+|||
T Consensus 347 -~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDE 424 (784)
T PRK10787 347 -IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDE 424 (784)
T ss_pred -CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEC
Confidence 13346999999999999999999999999999998765432 3556665666555665554554 899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~------------~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
+|.+....+. ...+.|+..+|.- ...-+.+++|+|+|.. .++++|++||. .+.+..+
T Consensus 425 idk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~ 493 (784)
T PRK10787 425 IDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGY 493 (784)
T ss_pred hhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCC
Confidence 9999764321 1234467766631 1122568899999886 59999999995 5899999
Q ss_pred CHHHHHHHHHHhCCCCC-----CC-C--CCC---HHHHHHH-hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCC
Q 011400 376 DTEARRAMFESLLPSQT-----GE-E--SLP---YDLLVER-TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 443 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~-----~~-~--~~~---l~~la~~-t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d 443 (487)
+.++..+|++.++.... .. . ..+ ++.+++. +..+-.+.|+.++...+...+.+.+. .
T Consensus 494 t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~--~--------- 562 (784)
T PRK10787 494 TEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLL--D--------- 562 (784)
T ss_pred CHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHh--c---------
Confidence 99999999999884211 11 1 111 2333321 22222344555444443333333210 0
Q ss_pred CCCCCCCCCHHHHHHHHhccC
Q 011400 444 ELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 444 ~~~~~~~It~eD~~~AL~~~~ 464 (487)
.......|+.+++.+.|..-+
T Consensus 563 ~~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 563 KSLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred CCCceeeecHHHHHHHhCCCc
Confidence 011224699999999998543
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.74 E-value=2.9e-17 Score=159.63 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=138.4
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
-++..|+|.+|++++|++|.-++.....+.+ ..-|+|||||||.||||||+.+|+++|..+-..++..+.
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e-------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le--- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGE-------ALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE--- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCC-------CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc---
Confidence 3566799999999999999999877665543 446899999999999999999999999999888877662
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC---------------CCCc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDEL 345 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~---------------~~~~ 345 (487)
-...+-.++.... ..+|||||||+.+.+. +..-|+..|+++.- .-.+
T Consensus 90 ---K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 ---KPGDLAAILTNLE--EGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---ChhhHHHHHhcCC--cCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 2233334443322 3479999999999654 22235556654321 1134
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcCCcH
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSG 411 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G~sg 411 (487)
.-+|++|.+...+..+|++||.....+..++.++..+|+...........+. ....+|+++.|-..
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 6678999999999999999999999999999999999999987655554332 35668888887543
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-16 Score=171.70 Aligned_cols=224 Identities=42% Similarity=0.611 Sum_probs=195.4
Q ss_pred cccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 226 PIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 226 ~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
++.+++.+... ..++++++++||||||||+++++++++ +..+..++.....+++.|.++..++.+|..+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 34455555544 788899999999999999999999999 7666888899999999999999999999999999999999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHH
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRA 382 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~ 382 (487)
+||+|.+.+.+.. ........+..+++..+++.. ... +++++.+|.+..+++++++ ||+..+.+..|+...+.+
T Consensus 82 ~d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 82 IDEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred echhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 9999999998766 445566888999999999998 666 8889999999999999988 999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 383 MFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 383 IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
++...........+.++..++..+.|++++++..+++++...+++|.. ........++.+|+.+++++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------------~~~~~~~~~~~~~~~~~l~~ 225 (494)
T COG0464 158 ILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------------DLVGEYIGVTEDDFEEALKK 225 (494)
T ss_pred HHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------------ccCcccccccHHHHHHHHHh
Confidence 999988777777788899999999999999999999999999998864 00112244899999999999
Q ss_pred cCCC
Q 011400 463 TRPS 466 (487)
Q Consensus 463 ~~ps 466 (487)
+.|+
T Consensus 226 ~~~~ 229 (494)
T COG0464 226 VLPS 229 (494)
T ss_pred cCcc
Confidence 9886
No 58
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.72 E-value=6.6e-17 Score=180.47 Aligned_cols=240 Identities=22% Similarity=0.282 Sum_probs=169.2
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++......-+++.++|.+...+++.+.+... ...++||+||||||||++|+++|...
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45567777777777788999999999999999877442 23578999999999999999999875
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+..++.++...+. .+|.|+.++.++.++..+....++||||||+|.|.+.+........ +.+.|...+
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L 311 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLL 311 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHH
Confidence 4566676666655 4678999999999999988888899999999999876532211111 222222222
Q ss_pred cCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHH-----HHHHh
Q 011400 337 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~-----la~~t 406 (487)
. + +.+.+|++|+.++ ..|+++.|||. .|.++.|+.+++..||+.+...+....++.+.+ .+..+
T Consensus 312 ~----~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 312 S----S-GKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 385 (758)
T ss_pred h----C-CCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHh
Confidence 2 2 3477888888764 57999999996 599999999999999998876666555555433 33333
Q ss_pred cC-----CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 407 EG-----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 407 ~G-----~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.. +.|...-.++.+|+... |... .. .....|+.+|+.+.+.+..
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~--~~~~----------~~--~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARA--RLMP----------VS--KRKKTVNVADIESVVARIA 434 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhh--ccCc----------cc--ccccccChhhHHHHHHHHh
Confidence 33 34455666777766432 1100 00 0112478888888887765
No 59
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=3.8e-16 Score=169.25 Aligned_cols=224 Identities=21% Similarity=0.248 Sum_probs=148.6
Q ss_pred HHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------
Q 011400 192 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 264 (487)
Q Consensus 192 ~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------- 264 (487)
++...+....++.+|++++|.+..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~ 117 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP 117 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC
Confidence 3455667777889999999999999999876432 234689999999999999999998753
Q ss_pred ---CCcEEEEecccch-------hhccCCcHHH----------------HHHHHHHHHhcCCcEEEechhhhHHhhhccc
Q 011400 265 ---KTTFFNISASSVV-------SKWRGDSEKL----------------IKVLFELARHHAPSTIFLDEIDAIISQRGEA 318 (487)
Q Consensus 265 ---~~~~i~v~~~~l~-------~~~~g~se~~----------------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~ 318 (487)
+.+|+.++|.... ....+..... ....+. ....++|||||++.|...
T Consensus 118 ~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~---- 190 (531)
T TIGR02902 118 FKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPV---- 190 (531)
T ss_pred cCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHH----
Confidence 3678999986421 1111100000 000111 223479999999998644
Q ss_pred chhhHHHHHHHHHHHHHhcCCc--------------------------CCCCcEEEEEEeCCCCcccHHHHhhccccccC
Q 011400 319 RSEHEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILV 372 (487)
Q Consensus 319 ~~~~~~~~~i~~~Ll~~ld~~~--------------------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~ 372 (487)
.++.|+..++.-. ......+|++||+.|+.+++++++|+. .+.+
T Consensus 191 ---------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f 260 (531)
T TIGR02902 191 ---------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV-EIFF 260 (531)
T ss_pred ---------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhh-eeeC
Confidence 2233444443210 011235566777889999999999995 4888
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPI 451 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~I 451 (487)
+.++.++..+|++..+.......+ ..++.++..+. +++++.++++.|+..+..+ ....|
T Consensus 261 ~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~------------------~~~~I 320 (531)
T TIGR02902 261 RPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE------------------GRKRI 320 (531)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC------------------CCcEE
Confidence 888999999999999876554322 22444554443 6788888888776554321 01349
Q ss_pred CHHHHHHHHhccC
Q 011400 452 RPEDVEIALKNTR 464 (487)
Q Consensus 452 t~eD~~~AL~~~~ 464 (487)
+.+|++.++..-+
T Consensus 321 t~~dI~~vl~~~~ 333 (531)
T TIGR02902 321 LAEDIEWVAENGN 333 (531)
T ss_pred cHHHHHHHhCCcc
Confidence 9999999998443
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.9e-16 Score=169.54 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=133.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+++++.+|+||+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.++.
T Consensus 7 arKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~ 75 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITA 75 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCC
Confidence 44567888999999999999999988543 23567899999999999999999999865
Q ss_pred ------------------cEEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHH
Q 011400 267 ------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 267 ------------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
.+++++..+ ...-..++.+.+... .....|+||||+|.|..
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------- 138 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------- 138 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------
Confidence 223333221 012234455544433 23356999999998843
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
...+.||..|+. ....+.+|.+|+.++.|.+.+++|| ..+.|..++.++..+.++.++.......+ ..++.++
T Consensus 139 --~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 139 --HAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred --HHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 235668888873 3445677888889999999999999 55999999999999888887765444322 2256677
Q ss_pred HHhcCCcHHHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~~A 421 (487)
+.+.|-. ++...++..+
T Consensus 213 ~~A~Gs~-RdALsLLdQa 229 (700)
T PRK12323 213 QAAQGSM-RDALSLTDQA 229 (700)
T ss_pred HHcCCCH-HHHHHHHHHH
Confidence 7777644 4444454443
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.1e-15 Score=163.00 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=124.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC----------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~---------- 266 (487)
+....++.+|+|++|++++++.|...+... ..++++||+||||||||++|+++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 345567888999999999999998877543 24567999999999999999999998864
Q ss_pred --------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 267 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 267 --------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+... .
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a 133 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------A 133 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------H
Confidence 3455544321 112344555544432 23469999999988532 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. .+..+++|++|+.+..+++++++|+. .+.+..++.++...+++..+....... +..++.+++.+.
T Consensus 134 ~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 134 FNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 3557777763 23345566677778899999999995 589999999999999988875544322 223555666555
Q ss_pred C
Q 011400 408 G 408 (487)
Q Consensus 408 G 408 (487)
|
T Consensus 210 G 210 (472)
T PRK14962 210 G 210 (472)
T ss_pred C
Confidence 4
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.3e-15 Score=160.70 Aligned_cols=179 Identities=16% Similarity=0.185 Sum_probs=125.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|+|++|++.+++.|...+... ..++.+||+||||||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 344567888999999999999999887542 234569999999999999999999998652
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.+++..- .....++.+.+.+. .....|+||||+|.|.. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence 333332110 11233444444333 23446999999998843 24
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. ....+++|.+|+.++.+.+++++|+.. +.|..++.++-.+.++..+....... +..+..+++.+.
T Consensus 138 ~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 138 FNALLKTLEE---PPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHHhhc---CCCceEEEeecCChhhccHHHHhhhhe-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5667888763 345577778888899999999999955 88888888888888888876544332 223455666666
Q ss_pred CC
Q 011400 408 GY 409 (487)
Q Consensus 408 G~ 409 (487)
|-
T Consensus 214 Gd 215 (484)
T PRK14956 214 GS 215 (484)
T ss_pred Ch
Confidence 53
No 63
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.68 E-value=1.1e-15 Score=173.36 Aligned_cols=200 Identities=20% Similarity=0.303 Sum_probs=146.7
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 4556777777777888899999999988888776643 233579999999999999999999986
Q ss_pred ------CCcEEEEecccchh--hccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++.+.+.. .+.|+.+..++.+++.+.. ..++||||||+|.+.+.+..... .. ..+.|...
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~n~Lkp~ 311 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD----AANLLKPA 311 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc----HHHHhhHH
Confidence 35577888777653 6889999999999998865 45789999999999875432111 11 11223333
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-----CCCHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVER 405 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-----~~~l~~la~~ 405 (487)
+. + +.+.+|++|+.. ..+|++|.|||. .|.++.|+.+++..||+.+........ +..+..++..
T Consensus 312 l~----~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 312 LA----R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVEL 385 (852)
T ss_pred hh----C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHH
Confidence 32 3 346678888753 358999999996 699999999999999877665433222 2335667788
Q ss_pred hcCCcH
Q 011400 406 TEGYSG 411 (487)
Q Consensus 406 t~G~sg 411 (487)
+.+|.+
T Consensus 386 s~ryi~ 391 (852)
T TIGR03345 386 SHRYIP 391 (852)
T ss_pred cccccc
Confidence 877643
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=7.6e-16 Score=168.29 Aligned_cols=188 Identities=19% Similarity=0.202 Sum_probs=133.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|++|+|++.+++.|+.++... ..++.+||+||+|||||++++.+|+.+++.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 44567888999999999999999987532 235678999999999999999999988642
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
+++++..+ ...-..++.+++.+.. ....|+||||+|.|.. ...
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~ 136 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAF 136 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHH
Confidence 33333221 1122345555554432 2346999999998843 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.||..|+. ....+.+|.+||.++.|.+.+++||. .+.|..++.++..+.|+.++....... +..+..|++.+.|
T Consensus 137 NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 137 NAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHHHHHh---cCCCeEEEEEECChhhccchhhhheE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 567787773 33457788889999999999999994 489999999999999998886655432 2336667788887
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
-.. +..+++..
T Consensus 213 smR-dALsLLdQ 223 (830)
T PRK07003 213 SMR-DALSLTDQ 223 (830)
T ss_pred CHH-HHHHHHHH
Confidence 554 33344333
No 65
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=9.2e-16 Score=174.50 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=139.6
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++.++++.....+-++++++|.+...+++.+.+... ...+++|+||||||||++|+++|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcC------------CcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 45567777777777888999999999888888877442 33579999999999999999999988
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++.+.+. .+|.|+.++.++.+|+.+.. ..++||||||+|.|.+..... ...... +.|...
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~~----~~lkp~ 302 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDAG----NMLKPA 302 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhHH----HHhcch
Confidence 6788999888776 46889999999999987644 567899999999998764322 112222 212222
Q ss_pred hcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC
Q 011400 336 MDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 394 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~ 394 (487)
+ .+ +.+.+|++|+..+ .+|+++.|||.. |.++.|+.+++..|++.+.......
T Consensus 303 l----~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 303 L----AR-GELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred h----hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhhhhccC
Confidence 2 23 3467788887764 489999999975 8899999999999999887654433
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=3.5e-15 Score=157.45 Aligned_cols=154 Identities=23% Similarity=0.356 Sum_probs=112.0
Q ss_pred cCCCCCCCCcccCcHHHHHH---HHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 199 RGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~---L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...++.+++|++|++++... |..++... ...+++|+||||||||++|+++|+.++.+++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34566789999999998666 77777431 2357999999999999999999999999999998754
Q ss_pred chhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 276 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
. ....++.+++.+. .....||||||+|.+... ..+.|+..++. . .+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~-~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----G-TITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----C-cEEEEEe
Confidence 2 2234455555443 224579999999988532 22345565552 2 3445544
Q ss_pred e-CC-CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 352 T-NL-PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 352 T-n~-p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
| .. ...+++++++|| ..+.++.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 33 357999999999 56899999999999999987654
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=6e-15 Score=153.10 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=127.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+++|+++...
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 44567788999999999999999887542 235678999999999999999999988532
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++++. ...-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~ 136 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSF 136 (363)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HHH
Confidence 22222111 0122345555554432 1235999999998842 233
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.++.+.+++++|+. .+.+++|+.++..++++..+...+... +..++.++..+.|
T Consensus 137 naLLk~lEe~---~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 137 NALLKTLEEP---PQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHHhcC---CCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4577777642 3345566677778889999999994 589999999999999998876654322 2335556666665
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
+.+++..++..
T Consensus 213 -~~R~al~~l~~ 223 (363)
T PRK14961 213 -SMRDALNLLEH 223 (363)
T ss_pred -CHHHHHHHHHH
Confidence 34444444433
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.3e-15 Score=161.78 Aligned_cols=187 Identities=18% Similarity=0.184 Sum_probs=131.3
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++|+|++.+++.|..++... ..++.+||+||||||||++|+++|+.++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 34567788999999999999999988532 34578999999999999999999999864
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++++- ..-..++.+...+.. ....|++|||+|.|... ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~ 135 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SF 135 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HH
Confidence 2344443321 122345555544322 23469999999988432 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. ...+.+|.+|+.+..+...+++|+. .+.|..++.++....++..+.......+ ..+..+++.+.|
T Consensus 136 NALLKtLEEP---P~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 136 NALLKTLEEP---PEHVKFLFATTDPQKLPITVISRCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHHhcC---CCCcEEEEEECChHhhhHHHHHhhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5677777732 3345666777888889999999994 4899999999999999888866554332 335667777665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++.+++.
T Consensus 212 -dLRdALnLLD 221 (702)
T PRK14960 212 -SLRDALSLTD 221 (702)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.65 E-value=1.4e-15 Score=172.87 Aligned_cols=200 Identities=18% Similarity=0.272 Sum_probs=148.3
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++......-+|++++|.++..+++.+.+.. ...++++|+||||||||++|+.+|..+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4556677777777777899999999999999998754 244689999999999999999999987
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 336 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l 336 (487)
+.+++.++.+.+. .+|.|+.+..++.+++.+....++||||||+|.|.+.....+ ... +.+.|...+
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~~----~a~lLkp~l 303 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AID----AANILKPAL 303 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-ccc----HHHHhHHHH
Confidence 4789999988776 478899999999999999888889999999999987643211 111 122222222
Q ss_pred cCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC----CCC-CCCCHHHHHHHh
Q 011400 337 DGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGE-ESLPYDLLVERT 406 (487)
Q Consensus 337 d~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~----~~~-~~~~l~~la~~t 406 (487)
. + +.+.+|++|+... ..|+++.+||.. +.++.|+.++...|++...... ... .+..+..++..+
T Consensus 304 ~----r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls 377 (821)
T CHL00095 304 A----R-GELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLS 377 (821)
T ss_pred h----C-CCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 2 2 3366777777653 478999999965 7899999999999988654221 111 222356677777
Q ss_pred cCCcH
Q 011400 407 EGYSG 411 (487)
Q Consensus 407 ~G~sg 411 (487)
.+|.+
T Consensus 378 ~~yi~ 382 (821)
T CHL00095 378 DQYIA 382 (821)
T ss_pred hccCc
Confidence 77654
No 70
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.8e-15 Score=162.84 Aligned_cols=189 Identities=19% Similarity=0.182 Sum_probs=130.7
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|...+... ..++.+||+||||||||++|+.+|+.++..
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 44567888999999999999999988542 245678999999999999999999988542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++++++++- ..-..++.+.+.+.. ....|++|||+|.|... ..
T Consensus 76 C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~ 136 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SF 136 (509)
T ss_pred CHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HH
Confidence 444443321 122335555544332 23469999999988532 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.+..+.+.+++|+ ..+.+..++.++-...++..+...+...+ ..++.+++.+.|
T Consensus 137 naLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 137 NALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 334666677788888988999999 44888888888888888877765544322 235556666655
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 -slR~al~lLdq~ 224 (509)
T PRK14958 213 -SVRDALSLLDQS 224 (509)
T ss_pred -cHHHHHHHHHHH
Confidence 444555555433
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.65 E-value=2.4e-15 Score=171.53 Aligned_cols=199 Identities=19% Similarity=0.307 Sum_probs=146.0
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---- 264 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---- 264 (487)
..++..+++.....+-++++++|.++..+++.+.+.. ...++++|+||||||||++|+++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 4556777777777888899999999998888887644 233678999999999999999999986
Q ss_pred ------CCcEEEEecccch--hhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 ------KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 ------~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+.+++.++...+. .+|.|+.++.++.+++.+.. ..|+||||||+|.|.+.....+ .. ...+.|...
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~----d~~~~Lk~~ 297 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM----DAGNMLKPA 297 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh----HHHHHhchh
Confidence 6778888887775 46889999999999998865 3589999999999986432211 11 122222222
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-----CHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVER 405 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-----~l~~la~~ 405 (487)
+ .+ +.+.+|++|+.. ..+|+++.|||.. +.++.|+.+++..|++.+.........+ .+...+..
T Consensus 298 l----~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~l 371 (852)
T TIGR03346 298 L----AR-GELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATL 371 (852)
T ss_pred h----hc-CceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHh
Confidence 2 23 346778888766 3579999999965 8899999999999999876555443332 24445555
Q ss_pred hcCCc
Q 011400 406 TEGYS 410 (487)
Q Consensus 406 t~G~s 410 (487)
+.+|.
T Consensus 372 s~~yi 376 (852)
T TIGR03346 372 SHRYI 376 (852)
T ss_pred ccccc
Confidence 55553
No 72
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=3.4e-15 Score=160.50 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=134.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
|...+.+.++++++|.+.+++.|..++..... ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 55667888899999999999999999865431 1346789999999999999999999999999999998765
Q ss_pred hhhccCCcHHHHHHHHHHHHh------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 277 VSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
.. ...+..+...+.. ..+.+|+|||+|.+..... ......|+..++. .. ..+|+
T Consensus 76 r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIl 135 (482)
T PRK04195 76 RT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIIL 135 (482)
T ss_pred cc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEE
Confidence 32 2233333333322 2467999999999864211 1123445555552 12 23566
Q ss_pred EeCCCCcccH-HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 351 ATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 351 tTn~p~~Ld~-aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
++|.+..+.. .+++|+ ..+.|+.|+.++...+++..+....... +..++.|++.+.| |++.+++
T Consensus 136 i~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 136 TANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred eccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 8888888887 677777 5599999999999999999886655432 2335667776655 5554444
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.2e-14 Score=159.08 Aligned_cols=187 Identities=21% Similarity=0.244 Sum_probs=130.2
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
+++++.+|+||+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 4457788999999999999999888542 234568999999999999999999998652
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++..+- ..-..++.+.+.+. .....|++|||+|.|.. ...+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHH
Confidence 233332210 11233444444432 22346999999998843 3456
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
.||..|+. ....+.+|.+|+.+..|.+.+++|+ ..+.|..++.++-...|+..+.......+ ..+..++..+.|.
T Consensus 138 ALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs 213 (647)
T PRK07994 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS 213 (647)
T ss_pred HHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 68888873 3345666777888899999999998 55899999999999888888755443322 3356677777775
Q ss_pred cHHHHHHHHHH
Q 011400 410 SGSDIRLVSKE 420 (487)
Q Consensus 410 sg~dI~~L~~~ 420 (487)
.+ +...++..
T Consensus 214 ~R-~Al~lldq 223 (647)
T PRK07994 214 MR-DALSLTDQ 223 (647)
T ss_pred HH-HHHHHHHH
Confidence 44 34444433
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.3e-14 Score=161.36 Aligned_cols=190 Identities=19% Similarity=0.207 Sum_probs=130.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE---------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 268 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~--------- 268 (487)
.+++++.+|++|+|++.+++.|+.++... +.++.+||+||||||||++|+.+|+.++..-
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 44567788999999999999999887542 2355689999999999999999999986531
Q ss_pred ---------------EEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 269 ---------------FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 269 ---------------i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
+.++..+ ...-..++.+.+.+.. ....|+||||+|.|. ....
T Consensus 76 C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eAq 136 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSSF 136 (944)
T ss_pred chHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHHH
Confidence 1111110 0112334554444332 234699999999884 3345
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+. ....+.+|.+|+.+..|.+.+++|+ .++.|..++.++....|+..+.......+ ..++.+++.+.|
T Consensus 137 NALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 3344556667888888999999999 44899999999999888887765433322 235667777776
Q ss_pred CcHHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEAA 422 (487)
Q Consensus 409 ~sg~dI~~L~~~A~ 422 (487)
-. +++..++..+.
T Consensus 213 d~-R~ALnLLdQal 225 (944)
T PRK14949 213 SM-RDALSLTDQAI 225 (944)
T ss_pred CH-HHHHHHHHHHH
Confidence 44 44555554433
No 75
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.4e-14 Score=154.41 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=134.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------ 265 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------------ 265 (487)
.+.+++.+|+|++|++.+++.|...+... ..++++||+||||+|||++|+.+|+.++
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 34567888999999999999999877542 3467899999999999999999999763
Q ss_pred ------------CcEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 266 ------------TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 266 ------------~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
..++++++++- ..-..++.+.+.+... ...|++|||+|.|.. ...
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~ 133 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAF 133 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHH
Confidence 23455555421 2334566666655432 346999999988742 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+.. +.+..++.++....++..+...+...+ ..++.+++.+.|
T Consensus 134 NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 134 NALLKTLEE---PAPHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 668888874 333466667778888899999999955 899999999999999988866554422 335667777765
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 210 -slR~alslLdql 221 (491)
T PRK14964 210 -SMRNALFLLEQA 221 (491)
T ss_pred -CHHHHHHHHHHH
Confidence 445555555444
No 76
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=6.7e-15 Score=153.64 Aligned_cols=187 Identities=17% Similarity=0.203 Sum_probs=128.1
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 267 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------- 267 (487)
.|++|+|++.+++.|+..+.....+...+. ...++++||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 389999999999999999977654322221 2356789999999999999999999987443
Q ss_pred ------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 268 ------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 268 ------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
+..+.... ....-..++.+++.+... ...|++|||+|.+... ..+.|+..|+
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 11221110 111234466777666532 3359999999998532 2355888887
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 417 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L 417 (487)
.. ....+ +|.+|+.++.+.+++++|+. .+.|+.|+.++...++.... .. .......++..+.|..+..+..+
T Consensus 143 ep--~~~~~-fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPRTV-WLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCCCe-EEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 32 33334 44555558999999999994 59999999999888876432 12 12335568888999888776655
Q ss_pred HH
Q 011400 418 SK 419 (487)
Q Consensus 418 ~~ 419 (487)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 44
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.63 E-value=2.3e-14 Score=148.25 Aligned_cols=228 Identities=19% Similarity=0.188 Sum_probs=142.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~ 272 (487)
+....++++|.++..+.|...+...+.. ..+.+++|+||||||||++++++++++. ..+++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 4455678999999999999988543321 2345799999999999999999998762 5688888
Q ss_pred cccchhh----------c---------cC-CcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 273 ASSVVSK----------W---------RG-DSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 273 ~~~l~~~----------~---------~g-~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
|....+. . .+ ...+....++.... ...+.||+|||+|.+.... ..++..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 8654321 1 01 11233444554443 2446799999999997221 113333
Q ss_pred HHHHhcCCcCCCCcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCC---CCCCCHHHHHH
Q 011400 332 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG---EESLPYDLLVE 404 (487)
Q Consensus 332 Ll~~ld~~~~~~~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~---~~~~~l~~la~ 404 (487)
|+...+........+.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+..... -.+..++.++.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA 231 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH
Confidence 4433221222335678888898885 47888888985 56899999999999999988752111 11112233333
Q ss_pred ---HhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 405 ---RTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 405 ---~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.+.|... .+..+|+.|+..+.++ ....||.+|+.+|+..+..+
T Consensus 232 ~~~~~~Gd~R-~al~~l~~a~~~a~~~------------------~~~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 232 LAAQEHGDAR-KAIDLLRVAGEIAERE------------------GAERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHhcCCHH-HHHHHHHHHHHHHHHc------------------CCCCCCHHHHHHHHHHHHHH
Confidence 3345433 3344666666554432 01247888888877766433
No 78
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.1e-14 Score=156.14 Aligned_cols=190 Identities=19% Similarity=0.238 Sum_probs=134.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|+|++|++.+++.|...+... ..++++||+||||||||++|+++|+.++..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 445678888999999999999998876442 345789999999999999999999998642
Q ss_pred -------------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHH
Q 011400 268 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 268 -------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
++++++.+ ......++.+++.+... ...|++|||+|.+..
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------- 142 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------- 142 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------
Confidence 12222111 12345566677666432 245999999998842
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
...+.|+..++. ....+++|.+|+.++.+.+++++|+. .+.+..++.++...+++..+...+...+ ..++.++
T Consensus 143 --~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 143 --GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred --HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 234557777763 33456666677888889999999994 5889999999999999999876554433 3356677
Q ss_pred HHhcCCcHHHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~~A 421 (487)
..+.| +.+++..++..+
T Consensus 217 ~~s~G-slR~al~~Ldka 233 (507)
T PRK06645 217 YKSEG-SARDAVSILDQA 233 (507)
T ss_pred HHcCC-CHHHHHHHHHHH
Confidence 77776 445555555444
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=1e-14 Score=148.72 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=121.2
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|.+.+++.+|+|++|.+++++.|+.++... ...++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 456678889999999999999998876431 224699999999999999999999972 345666
Q ss_pred ecccchhhccCCcHHHHHHHHHHH-H------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELA-R------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a-~------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.++..+ ...++...... . ...+.|++|||+|.+.... .+.|+..++... .
T Consensus 71 n~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------q~aL~~~lE~~~---~ 128 (319)
T PLN03025 71 NASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA-------------QQALRRTMEIYS---N 128 (319)
T ss_pred ccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH-------------HHHHHHHHhccc---C
Confidence 6654321 11233222211 1 1235699999999985431 233556665322 2
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
...+|.++|.+..+.+++++|+. .+.|+.|+.++....++..+...+... +..++.++..+.|
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred CceEEEEeCCccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 23456688888889999999994 589999999999999998876654432 2235555555554
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.1e-14 Score=159.16 Aligned_cols=189 Identities=20% Similarity=0.218 Sum_probs=132.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|...+... +.++++||+||+|||||++|+++|+.++..
T Consensus 7 arKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 44567888999999999999999988642 345789999999999999999999987543
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++... ......++.+++.+.. ....|+||||+|.|.. ...
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~ 136 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAF 136 (709)
T ss_pred cHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHH
Confidence 12222111 1223456666654432 2346999999987742 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++....|+..+...+...+ ..+..|++.+.|
T Consensus 137 NALLKtLEEP---p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 137 NAMLKTLEEP---PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred HHHHHHHHhC---CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 5678888732 334567778888999999999999 44888899999999999988876554422 235666766655
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 -slRdAlnLLDqa 224 (709)
T PRK08691 213 -SMRDALSLLDQA 224 (709)
T ss_pred -CHHHHHHHHHHH
Confidence 344555555443
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.61 E-value=3.9e-14 Score=155.70 Aligned_cols=225 Identities=20% Similarity=0.229 Sum_probs=141.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 272 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~ 272 (487)
..--+.|.|.++..++|..++...+... .+...++|+|+||||||++++.+.+++ ...+++|+
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgs-------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQS-------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcC-------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 3334789999999999999886554311 233345799999999999999998876 25678999
Q ss_pred cccchhhc----------------cC-CcHHHHHHHHHHHHh--cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 273 ASSVVSKW----------------RG-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 273 ~~~l~~~~----------------~g-~se~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
|..+...+ .| .+...+..+|..... ....||+|||||.|.... ..+ |+
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDV---LY 890 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKV---LF 890 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHH---HH
Confidence 96543221 01 123455666665422 234699999999997531 223 33
Q ss_pred HHhcCCcCCCCcEEEEEEeCC---CCcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHhcC
Q 011400 334 IQMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTG-EESLPYDLLVERTEG 408 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~---p~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~~~-~~~~~l~~la~~t~G 408 (487)
..++........+.||+++|. +..+++++++||.. .+.|++|+.++..+||+..+..... -.+..++.+|+.+..
T Consensus 891 nLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 891 TLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred HHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 333322233456888899986 45678889998864 4888999999999999998865311 111113333332222
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 409 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 409 ~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
. .+.+|+++..+....+.. ....|+.+|+.+|+.++..+
T Consensus 971 ~-------------SGDARKALDILRrAgEik------egskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 971 V-------------SGDIRKALQICRKAFENK------RGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred c-------------CCHHHHHHHHHHHHHhhc------CCCccCHHHHHHHHHHHHhh
Confidence 1 233444444444333321 11258999999999877444
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.61 E-value=1.8e-14 Score=147.13 Aligned_cols=190 Identities=21% Similarity=0.246 Sum_probs=123.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|..++.+.+|++++|.+.+++.|..++... ...+++|+||||||||++|+++++++. .+++.+
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 445667788999999999999999987532 123699999999999999999999883 356788
Q ss_pred ecccchhhcc-------------CC-------cHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHH
Q 011400 272 SASSVVSKWR-------------GD-------SEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASR 326 (487)
Q Consensus 272 ~~~~l~~~~~-------------g~-------se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~ 326 (487)
++.++..... +. ....++.+....... .+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------ 140 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------ 140 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------
Confidence 8766532210 00 112233333232222 2469999999987432
Q ss_pred HHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHH
Q 011400 327 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVER 405 (487)
Q Consensus 327 ~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~ 405 (487)
..+.|...++.... ... +|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+....... +..++.++..
T Consensus 141 -~~~~L~~~le~~~~--~~~-~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 -AQQALRRIMEQYSR--TCR-FIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred -HHHHHHHHHHhccC--CCe-EEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 12235555553322 223 4456666677778899998 4588999999999999999876555432 2234556655
Q ss_pred hcCCcHHHHHHHHH
Q 011400 406 TEGYSGSDIRLVSK 419 (487)
Q Consensus 406 t~G~sg~dI~~L~~ 419 (487)
+. +|++.+..
T Consensus 216 ~~----gdlr~l~~ 225 (337)
T PRK12402 216 AG----GDLRKAIL 225 (337)
T ss_pred cC----CCHHHHHH
Confidence 53 34544443
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=2.2e-14 Score=145.79 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=113.7
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+.+.+++.+|++++|.+.+++.+..++... ..++.+||+||||+|||++|++++++++.+++.+++.+
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 455677889999999999999999988531 23456777999999999999999999999999998876
Q ss_pred hhhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.. .......+........ ...+.+|+|||+|.+... .....|...++.. ...+.+|+++|.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCCh
Confidence 11 1111122222211111 124689999999987321 0112233445432 2335577789999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
..+.+++++||. .+.++.|+.+++..+++.++
T Consensus 142 ~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 142 NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH
Confidence 999999999995 58999999999988876543
No 84
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=2.6e-14 Score=152.46 Aligned_cols=196 Identities=15% Similarity=0.266 Sum_probs=122.7
Q ss_pred CCCCCCCccc-CcH--HHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-GLE--NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G~e--~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.+..+|++++ |.. .+...+.++...+ ....++++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566788854 433 2455555544322 1234569999999999999999999987 56688999
Q ss_pred cccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+...... ....+.+..+ .+.+|+|||+|.+.++.. ....|+..++.....+. .+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits 251 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTS 251 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEEC
Confidence 88876654433221 1122222222 467999999999864421 11234444443322333 345555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
...|.. +++++++||. ..+.+..|+.++|..|++..+...... .+..++.+|+.+.| +.++|..++...
T Consensus 252 ~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l 326 (450)
T PRK00149 252 DRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRL 326 (450)
T ss_pred CCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHH
Confidence 555544 6789999995 468899999999999999998764433 22335667776665 344555444443
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.60 E-value=1.8e-14 Score=151.06 Aligned_cols=132 Identities=24% Similarity=0.361 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh----cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 282 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~----~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g 282 (487)
.|+|++.+|+.|...+..+...-... .....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 38999999999987775433222110 011234578999999999999999999999999999999988764 5777
Q ss_pred CcH-HHHHHHHHH----HHhcCCcEEEechhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCC
Q 011400 283 DSE-KLIKVLFEL----ARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGL 339 (487)
Q Consensus 283 ~se-~~l~~~f~~----a~~~~p~IL~IDEiD~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~ 339 (487)
... ..+..++.. .....++||||||||.+..++.+.... +.....+++.||..|++.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGT 214 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcC
Confidence 643 334444432 223467899999999998763221111 111234777888888753
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.2e-14 Score=154.13 Aligned_cols=177 Identities=21% Similarity=0.281 Sum_probs=125.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|..++... ..++.+||+||||||||++|+++|+.+...
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 35667888999999999999999988542 244567999999999999999999988531
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.+++.+ ......++.+.+.+.. ..+.||+|||+|.+. ....+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHHH
Confidence 34444321 1123344554444332 245699999998763 22355
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
.|+..++. ....+++|.+++.+..+.+.+.+|+. .+.|..|+.++....++..+...+...+ ..++.++..+.|
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777763 23345666678888999999999996 5899999999999999988866554322 235556666665
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.60 E-value=3.5e-14 Score=149.49 Aligned_cols=196 Identities=17% Similarity=0.283 Sum_probs=122.4
Q ss_pred CCCCCCc-ccCcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 202 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 202 ~~~~~~d-i~G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
+..+|++ ++|.+. +...+.+....+ ....+.++||||||+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4566888 556443 333444433221 1234579999999999999999999987 577889998
Q ss_pred ccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 274 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 274 ~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
.++...+...... ....+....+ .+.+|+|||+|.+.++.. ....|+..++.....+. .+|++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~~~~~~~-~iiits~ 240 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER-----------TQEEFFHTFNALHENGK-QIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-CEEEecC
Confidence 8776544322111 1112222222 357999999999864321 11224444433322223 3455555
Q ss_pred CCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 353 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 353 n~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..|.. +++.+++||. ..+.++.|+.++|..|++..+....... +..++.+|+...+ +.++|..++....
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~ 315 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLL 315 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 55543 6688999996 4689999999999999999987655443 3336778877765 4456666555443
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.6e-14 Score=154.71 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|...+... ..++.+||+||||+|||++|+.+|+.++..
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34556778999999999999999888542 345678999999999999999999998542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++++. ......++.+.+.+... ...|++|||+|.+.. ...
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a~ 136 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SAF 136 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HHH
Confidence 22222211 11234456666555321 235999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...+...+...+...+ ..+..+++.+.|
T Consensus 137 naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 137 NAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 568888874 3344566677777888888899999 55999999999988888887765444322 234556666665
Q ss_pred CcHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEA 421 (487)
Q Consensus 409 ~sg~dI~~L~~~A 421 (487)
- .+++..++..+
T Consensus 213 s-lr~al~lldqa 224 (527)
T PRK14969 213 S-MRDALSLLDQA 224 (527)
T ss_pred C-HHHHHHHHHHH
Confidence 3 34444554443
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4.7e-14 Score=153.73 Aligned_cols=187 Identities=21% Similarity=0.241 Sum_probs=131.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++++|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.++.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 45567888999999999999999988542 34567999999999999999999998743
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.++++. +..-..++.+.+.+.. ....|++|||+|.|.. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 233443321 1233456666665543 2346999999998842 235
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+++|.+|+.++.+.+.+++|+.. +.|..|+.++....++..+...+...+ ..+..++..+.|
T Consensus 137 naLLKtLEep---p~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 137 NALLKTLEEP---PAHVIFILATTEPHKIPATILSRCQR-FDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHHHHHhcCC---CCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5678877732 33455666677889999999999965 889999999999999888866554332 335566776665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -~~R~al~~Ld 222 (559)
T PRK05563 213 -GMRDALSILD 222 (559)
T ss_pred -CHHHHHHHHH
Confidence 3444444433
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.59 E-value=1.7e-14 Score=144.23 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~ 274 (487)
.+..++.+++|++|++++..+ ...+...+.. ..-.+++||||||||||+||+.|+.-...+ |+++++.
T Consensus 129 aermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 129 AERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred hhhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 334466778999998886544 2222111111 122469999999999999999999988655 7777654
Q ss_pred cchhhccCCcHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
. ...+.++.+|+.++.. .-.|||||||+.+-...+ ..||-.++ .+..++|-
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-------------D~fLP~VE----~G~I~lIG 255 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-------------DTFLPHVE----NGDITLIG 255 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-------------hcccceec----cCceEEEe
Confidence 4 3445678888887653 346999999998854422 22443332 33434444
Q ss_pred EEeCCC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-----C---CCCC------CCCHHHHHHHhcCCcHHHH
Q 011400 350 AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----Q---TGEE------SLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 350 atTn~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-----~---~~~~------~~~l~~la~~t~G~sg~dI 414 (487)
+||..| ..++.+|++|+.. +.+..........||.+.+.. . +... +.-++.++..+.|-....|
T Consensus 256 ATTENPSFqln~aLlSRC~V-fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRCRV-FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhccce-eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 555444 6799999999955 555555666777777764321 1 0111 1124556776776544443
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 415 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 415 ~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..|--.+.+...| ........++.+|+.+.|+.-.
T Consensus 335 N~Lems~~m~~tr---------------~g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTR---------------SGQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhh---------------cCCcccceecHHHHHHHHhhcc
Confidence 3322211111111 0011224589999999998544
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2e-14 Score=157.03 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=129.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|+||+|++.+++.|..++... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~ 75 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA 75 (618)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC
Confidence 44567788999999999999999988543 234678999999999999999999988641
Q ss_pred -------------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHH
Q 011400 268 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 268 -------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
++.++..+ ...-..++.+.+.+... ...|++|||+|.|...
T Consensus 76 ~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~---------- 139 (618)
T PRK14951 76 TPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT---------- 139 (618)
T ss_pred CCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH----------
Confidence 22332221 01223455555554321 2359999999998532
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLV 403 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la 403 (487)
..+.|+..++. ....+.+|.+|+.+..+...+++|+ ..+.|..++.++....++..+...+...+ ..+..++
T Consensus 140 ---a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 140 ---AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred ---HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 24567777773 3344566677788888888999999 55899999999999999888765554433 2356677
Q ss_pred HHhcCCcHHHHHHHHH
Q 011400 404 ERTEGYSGSDIRLVSK 419 (487)
Q Consensus 404 ~~t~G~sg~dI~~L~~ 419 (487)
+.+.| +.+++..++.
T Consensus 213 ~~s~G-slR~al~lLd 227 (618)
T PRK14951 213 RAARG-SMRDALSLTD 227 (618)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77766 3344444443
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=4.9e-14 Score=145.20 Aligned_cols=177 Identities=21% Similarity=0.269 Sum_probs=123.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
....++.+|++++|++.+++.|.+.+... ..++.+||+||||+|||++|+++++.+...
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34557788999999999999999888532 345679999999999999999999987432
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.++... ......++.+++.+... ...|++|||+|.+.. ...
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~ 134 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAF 134 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHH
Confidence 23332221 12233456666665432 235999999998742 134
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. +..+++|.+|+.++.+.+++++|+. .+.++.|+.++...+++.++...+...+ ..+..+++.+.|
T Consensus 135 ~~Ll~~le~~---~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 135 NALLKTLEEP---PEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHHhCC---ccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5577777642 2345566677888888899999995 5899999999999999988866554322 234556666655
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.3e-14 Score=153.80 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=126.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|+.++... ..++.+||+||+|||||++|+++|+.++..
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 34567888999999999999999988542 345568999999999999999999987532
Q ss_pred ----------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 268 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 268 ----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
++.++++.. ..-..++.+.+.+.. ....|++|||+|.|...
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~------------- 133 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA------------- 133 (584)
T ss_pred cHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------
Confidence 222322211 112334444433322 23459999999988432
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t 406 (487)
..+.|+..|+. ....+++|.+|+.+..+.+++++|+ ..+.|..++.++..+.++.++...+...+ ..+..++..+
T Consensus 134 A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 134 GFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45668888873 3344666777788889999999998 45899999999988888888766554322 2234455544
Q ss_pred cCCcHHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSKE 420 (487)
Q Consensus 407 ~G~sg~dI~~L~~~ 420 (487)
.| +.+++.+++..
T Consensus 210 ~G-dlR~aln~Ldq 222 (584)
T PRK14952 210 GG-SPRDTLSVLDQ 222 (584)
T ss_pred CC-CHHHHHHHHHH
Confidence 44 33444444443
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4e-14 Score=159.37 Aligned_cols=187 Identities=20% Similarity=0.157 Sum_probs=127.0
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+++++.+|++|+|++.+++.|+..+..- ..++.+||+||+|||||++|+.||+.+.+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 35677888999999999999999988542 234568999999999999999999998642
Q ss_pred ----------------EEEEecccchhhccCCcHHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 268 ----------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 268 ----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
++.++..+. ..-..++.+.+.+ ......|+||||+|.|.. .
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~ 135 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------Q 135 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------H
Confidence 223322111 0122333333322 223456999999999853 2
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t 406 (487)
..+.||+.|+.. ...+++|++|+.++.|.+.|++|+. ++.|..++.++...+|+..+.......+ ..+..++..+
T Consensus 136 a~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~s 211 (824)
T PRK07764 136 GFNALLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAG 211 (824)
T ss_pred HHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 355688888743 3345666677888889999999994 5899999999999999888766554322 2245566666
Q ss_pred cCCcHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSK 419 (487)
Q Consensus 407 ~G~sg~dI~~L~~ 419 (487)
.| +.+++..++.
T Consensus 212 gG-dlR~Al~eLE 223 (824)
T PRK07764 212 GG-SVRDSLSVLD 223 (824)
T ss_pred CC-CHHHHHHHHH
Confidence 55 3344444433
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.3e-14 Score=151.40 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=123.7
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+...+++.+|+||+|++.+++.|...+... ..+.++||+||||||||++|+.+|+.+...
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 344567888999999999999999988542 224679999999999999999999988642
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++...- ..-..++.+.+.+. .....||||||+|.|.. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a 135 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EA 135 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------HH
Confidence 333432210 11122333322222 22346999999998842 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|..++.++...+|+..+....... +..++.+++.+.
T Consensus 136 ~naLLk~LEEP---~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 136 FNALLKTLEEP---PARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHHhhcc---CCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46688888742 2346677788888888889999995 589999999999988888776544322 223555666666
Q ss_pred CCc
Q 011400 408 GYS 410 (487)
Q Consensus 408 G~s 410 (487)
|-.
T Consensus 212 Gdl 214 (624)
T PRK14959 212 GSV 214 (624)
T ss_pred CCH
Confidence 533
No 96
>PRK06893 DNA replication initiation factor; Validated
Probab=99.58 E-value=7.5e-14 Score=135.88 Aligned_cols=177 Identities=16% Similarity=0.194 Sum_probs=106.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567799988765422 11111110 111 112358999999999999999999986 3455555543211
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
.....+++... ++.+|+|||++.+.++.. ....|+..++.....+..++|++++..|..
T Consensus 80 --------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 --------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred --------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 11112222222 347999999998864321 111244444433333444555555566665
Q ss_pred cc---HHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 358 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 358 Ld---~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
++ +.+++|+. ..+.++.|+.+++.+|++..+....... +..++.|++...|
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 44 78999874 5678999999999999998876544432 2335667777665
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.9e-14 Score=152.06 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=124.8
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
.+.+++.+|++++|++.+++.|...+... ..++.+||+||||||||++|+.+|+.+..
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34567788999999999999999888542 23466899999999999999999998853
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.++...- ..-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a~ 136 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QSF 136 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HHH
Confidence 2333332111 111233444444332 2346999999998743 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++-...++..+.......+ ..++.++..+.|
T Consensus 137 naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 137 NALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 568888873 2334556666677888888899999 55999999999988888887765443322 224556666654
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -dlR~alnlLe 222 (546)
T PRK14957 213 -SLRDALSLLD 222 (546)
T ss_pred -CHHHHHHHHH
Confidence 3333333333
No 98
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.57 E-value=1.8e-13 Score=134.63 Aligned_cols=181 Identities=20% Similarity=0.228 Sum_probs=126.4
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC------cEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~------~~i 269 (487)
-+.+.+.+.+|+++.|++.+++.|...+.. . ...++|||||||||||+.|+++|.++.. .+.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 345566778899999999999999998855 1 2347999999999999999999999954 244
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhc---------C-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHH---------A-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~---------~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
+.+.++..+..++ ..+++. |...... + +.|++|||+|.|..+ ..+.|...|+..
T Consensus 93 ~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 93 ELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDF 156 (346)
T ss_pred hhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhcc
Confidence 4455554433221 112221 2222211 1 259999999999644 345577788753
Q ss_pred cCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHhcC
Q 011400 340 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 408 (487)
Q Consensus 340 ~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t~G 408 (487)
...+.+|..||.++.|...+.+|+.. +.|+....+.....|+.+....+..-+. .++.+++.++|
T Consensus 157 ---s~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 ---SRTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred ---ccceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 33466778899999999999999977 7777766667777777777666665433 36667777666
No 99
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=1.7e-13 Score=143.27 Aligned_cols=229 Identities=20% Similarity=0.202 Sum_probs=145.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l 276 (487)
+....+.++|.++..++|...+...... ..+.+++|+||||||||++++.+++++ +..+++++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 4445678999999999999888543321 234579999999999999999999987 477899988654
Q ss_pred hhh----------cc-------CC-cHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 277 VSK----------WR-------GD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 277 ~~~----------~~-------g~-se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.+. .. +. ....+..+.+.... ..+.||+|||+|.+..... ...+..|+..++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 221 11 11 12333444444333 3457999999999972111 123445555555
Q ss_pred CCcCCCCcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHhcCCc
Q 011400 338 GLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTEGYS 410 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~---~~~~~~l~~la~~t~G~s 410 (487)
... ...+.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+.... .-.+..++.+++.+.+.+
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 332 22577788887763 47788888874 5689999999999999998874321 112223556666664432
Q ss_pred H--HHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCCh
Q 011400 411 G--SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 467 (487)
Q Consensus 411 g--~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~ 467 (487)
| +.+-.++..|+..+..+ ....|+.+|+..|+..+.++.
T Consensus 246 Gd~r~a~~ll~~a~~~a~~~------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 246 GDARVAIDLLRRAGLIAERE------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred CcHHHHHHHHHHHHHHHHHc------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 2 22334555555444332 113489999999988875443
No 100
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=4.6e-14 Score=136.42 Aligned_cols=191 Identities=21% Similarity=0.250 Sum_probs=134.8
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
....+.+++++|.+..|+.|.+.....+. ..|.+++||||++|||||+++|++.+++ |..+++|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 34567899999999999999998865543 2477899999999999999999999977 788999987776
Q ss_pred hhhccCCcHHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cCCCCcEEEEEEeCC
Q 011400 277 VSKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNL 354 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~VlVIatTn~ 354 (487)
. .+..+++..+. ...-|||+||+. + . . ... -...|-..|+|- ...+.+|+|.+|+|+
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLs-F--e--~---~d~----~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLS-F--E--E---GDT----EYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCC-C--C--C---CcH----HHHHHHHHhcCccccCCCcEEEEEecch
Confidence 3 23444544443 234699999973 1 1 1 111 113355556654 567788999999997
Q ss_pred CCccc---------------------H--HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHH----HHHHh
Q 011400 355 PWELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERT 406 (487)
Q Consensus 355 p~~Ld---------------------~--aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~----la~~t 406 (487)
-..++ + +|.+||+..+.|..|+.++-.+|++.++.......+. .+.. .|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 54321 1 4556999999999999999999999999776655432 2222 33444
Q ss_pred cCCcHHHHHHHHH
Q 011400 407 EGYSGSDIRLVSK 419 (487)
Q Consensus 407 ~G~sg~dI~~L~~ 419 (487)
.|.||+--.+.++
T Consensus 231 g~RSGRtA~QF~~ 243 (249)
T PF05673_consen 231 GGRSGRTARQFID 243 (249)
T ss_pred CCCCHHHHHHHHH
Confidence 5677766555544
No 101
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.57 E-value=3.1e-14 Score=147.41 Aligned_cols=247 Identities=25% Similarity=0.326 Sum_probs=159.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g- 282 (487)
+-|+|++++|+.+..++.....+..+...+ -.+++++||+||||||||++|+++|..++.+|+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 348999999999998886543332221111 124589999999999999999999999999999999887763 6777
Q ss_pred CcHHHHHHHHHHH-------------------------------------------------------------------
Q 011400 283 DSEKLIKVLFELA------------------------------------------------------------------- 295 (487)
Q Consensus 283 ~se~~l~~~f~~a------------------------------------------------------------------- 295 (487)
..+..++.+|+.+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 4556666555544
Q ss_pred ------------------------------------------------------------------------HhcCCcEE
Q 011400 296 ------------------------------------------------------------------------RHHAPSTI 303 (487)
Q Consensus 296 ------------------------------------------------------------------------~~~~p~IL 303 (487)
+..+.+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 01234699
Q ss_pred EechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhccccccC
Q 011400 304 FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILV 372 (487)
Q Consensus 304 ~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~~ 372 (487)
||||||+++.+..+. ...-...-++..||..++|-.. ...++++|++. ..|.+|=|.|.-||..++.+
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L 330 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVEL 330 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEEC
Confidence 999999999764211 1111223477788999887421 22457777665 34666778899999999999
Q ss_pred CCCCHHHHHHHHHHh----CCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHh-------HHHHHHHHHhhc--
Q 011400 373 PLPDTEARRAMFESL----LPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAM-------QPLRRLMVLLEG-- 435 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~----l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~-------~a~rr~~~~le~-- 435 (487)
..++.++...||..- ++.+ ..+- .++| |+...++.+++.|.. .-+|++...++.
T Consensus 331 ~~L~~edL~rILteP~nsLikQy--------~~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQY--------KALM-KTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHH--------HHHH-hhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999988887431 1111 1110 1222 566677777777654 123444333332
Q ss_pred --hhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 436 --RQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 436 --~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.....+... .....|+.+-+.+.+..+-
T Consensus 402 ~d~~fe~p~~~-~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 402 EDISFEAPDLS-GQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHHhcCCCCC-CCEEEECHHHHHhHHHHHH
Confidence 222333322 2335688888877776543
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.56 E-value=2.8e-13 Score=132.37 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=121.6
Q ss_pred CCCCCCccc-C-cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 202 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~-G-~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
+..+|++.+ | ...+...+..+... ....+++||||||||||+|++++++++ +..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 455677766 4 45566666665432 123579999999999999999999976 344556655442
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
... ...+.+.... ..+|+|||++.+.++.. .... |...++.....+...+++++++.|.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-------~~~~----lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-------WEMA----IFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-------HHHH----HHHHHHHHHHcCCCeEEEeCCCChH
Confidence 211 1112222222 26999999998854311 1111 2222222222222234555555555
Q ss_pred c---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 357 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 357 ~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
. +.+.+++|+. .++.+..|+.+++.++++.......... +..++.|++...|- .+.+..++......++
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~l~~~~l---- 218 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE-MRTLFMTLDQLDRASI---- 218 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHH----
Confidence 4 5789999995 6688999999999999998665544332 23356677777653 3344444433211111
Q ss_pred HHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 431 VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 431 ~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....+||.+.+++++.
T Consensus 219 ---------------~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 219 ---------------TAQRKLTIPFVKEILK 234 (235)
T ss_pred ---------------hcCCCCCHHHHHHHHc
Confidence 1124588888888764
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=151.31 Aligned_cols=177 Identities=19% Similarity=0.218 Sum_probs=125.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++++++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 34567788999999999999999988542 345678999999999999999999998532
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++++++.+ ...-..++.+.+.+... ...|++|||+|.|... ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~ 136 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AF 136 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HH
Confidence 23333221 11223455555554322 2359999999988532 34
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..|+. ....+.+|.+|+.++.|.+.+++|+. .+.|..++.++-...+...+...+... +..+..++..+.|
T Consensus 137 naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 137 NALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 668888873 33446677778888999999999995 589998999888888888776554432 2335566666666
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=1.9e-13 Score=145.05 Aligned_cols=226 Identities=17% Similarity=0.244 Sum_probs=130.9
Q ss_pred CCCCCCCccc-CcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 201 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 201 ~~~~~~~di~-G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.|..+|++.+ |... +...+.++...+...+ ..+.++++||||||+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4566788875 5433 2334444332211000 1233679999999999999999999976 6888899887
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++...+.......-...|.... ..+.+|+|||++.+.++.. ....++..++.....+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----------~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----------TQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----------hHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7655433221111111233222 3457999999998864311 1112333332221222 2334444444
Q ss_pred CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHh-HHHH
Q 011400 355 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM-QPLR 427 (487)
Q Consensus 355 p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~-~a~r 427 (487)
|. .+++++++||. ..+.+..|+.++|..|++..+.......+ ..++.++....+- .+.|...+...+. .+..
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~d-ir~L~g~l~~l~~~~a~~ 324 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSN-VKSLLHALTLLAKRVAYK 324 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH
Confidence 54 46789999995 67888999999999999998876554332 2245577766643 3344443333321 1222
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
+. ...+||.++++++|+.+
T Consensus 325 ~~-----------------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 325 KL-----------------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred Hh-----------------hCCCCCHHHHHHHHHHh
Confidence 21 11347888888888765
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.7e-13 Score=149.40 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=127.4
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE---Eec
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---ISA 273 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~---v~~ 273 (487)
+.+.+++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+.+.-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 345678889999999999999999988542 345678999999999999999999988542110 001
Q ss_pred ccch---h---h---ccC---CcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 274 SSVV---S---K---WRG---DSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 274 ~~l~---~---~---~~g---~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... + . ..+ .....++.+.+.+... ...|++|||+|.|... ..+.|+..|+
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE 143 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE 143 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh
Confidence 0000 0 0 001 1234466666655532 3469999999987432 3556888887
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
. .+..+++|.+|+.++.|.+.+++|+. .+.|..++.++....++..+...+...+ ..+..+|..+.|-
T Consensus 144 E---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs 212 (725)
T PRK07133 144 E---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS 212 (725)
T ss_pred c---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 3 33446666777888999999999996 5999999999999888887765544322 2255566666653
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.55 E-value=2.4e-13 Score=131.14 Aligned_cols=184 Identities=15% Similarity=0.183 Sum_probs=113.6
Q ss_pred CCCCccc--CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 204 VKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 204 ~~~~di~--G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
.+|++++ +.+.+.+.+++++.. ..+.+++|+||||||||++|+++++++ +.+++++++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 4567765 466688888876531 245689999999999999999999977 57888999887753
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.. ..++... ..+.+|+|||+|.+..... ....+...++.....+. .+|++++..+..+
T Consensus 80 ~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~~~~~-~iIits~~~~~~~ 137 (226)
T TIGR03420 80 AD--------PEVLEGL--EQADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVREAGG-RLLIAGRAAPAQL 137 (226)
T ss_pred hH--------HHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCC-eEEEECCCChHHC
Confidence 22 2222222 2346999999998853210 01123333332222222 3344344344333
Q ss_pred --c-HHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 359 --D-AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 359 --d-~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
. +.+.+|+. ..+.++.|+.+++..+++.++....... +..++.++.. -+-+.+++..+++++.
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALD 206 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHH
Confidence 2 78888884 6788999999999999988765433321 2224445553 3345556666665543
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.4e-13 Score=146.08 Aligned_cols=196 Identities=18% Similarity=0.333 Sum_probs=118.7
Q ss_pred CCCCCCCccc-CcHH--HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G~e~--~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.+..+|++++ |... +...+.+.... + ...++++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~-------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----P-------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----c-------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667788876 5332 22333333221 1 113569999999999999999999986 46788999
Q ss_pred cccchhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+..... ..+.. |.......+.+|+|||++.+.++.. ....++..++.....+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~-----------~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG-----------VQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH-----------HHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8877655432211 11222 2222223578999999998864311 11223333333322333 345545
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
...|.. +.+.+.+||. ..+.+.+|+.++|..|++..+....... +..++.||+...| +.++|..++...
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 566654 5678888985 4578899999999999999886544332 2235667776665 345555555443
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=1.4e-13 Score=153.19 Aligned_cols=154 Identities=22% Similarity=0.370 Sum_probs=106.9
Q ss_pred hcCCCCCCCCcccCcHHHHH---HHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~---~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
....++.+|+|++|++.+.. .|...+.. ....+++||||||||||++|+++|+.++.+++.+++.
T Consensus 19 aek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 19 ADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred HHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 33455778999999999884 45555532 1234799999999999999999999999999888875
Q ss_pred cchhhccCCcHHHHHHHHHHHH-----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~-----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
... .+.++..+..+. .....+|||||+|.+.... .+.|+..++. ..+++|
T Consensus 87 ~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q-------------QdaLL~~lE~-----g~IiLI 141 (725)
T PRK13341 87 LAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ-------------QDALLPWVEN-----GTITLI 141 (725)
T ss_pred hhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH-------------HHHHHHHhcC-----ceEEEE
Confidence 321 112233333321 1234699999999885321 2335555542 234555
Q ss_pred EEe-CCC-CcccHHHHhhccccccCCCCCHHHHHHHHHHhCC
Q 011400 350 AAT-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 350 atT-n~p-~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
++| ..+ ..+++++++|+ ..+.+++++.++...+++..+.
T Consensus 142 ~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 142 GATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 544 333 56899999997 4589999999999999999875
No 109
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=147.70 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=125.3
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 267 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--------- 267 (487)
+.+.+++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 344567788999999999999999988542 234668999999999999999999987531
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+... .
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------a 135 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------A 135 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------H
Confidence 12222111 0112334454444432 23469999999987422 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~ 407 (487)
.+.|+..++.. ... +++|.+|+.++.+.+++++|+. .+.+..|+.++...+++.++...+...+ ..++.++..+.
T Consensus 136 ~naLLk~LEep--p~~-~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 136 FNALLKTLEEP--PPR-TIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHHhcC--CCC-eEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 45577777732 223 4455566777888889999996 4899999999999999998876554322 23555666666
Q ss_pred CCcHHHHHHHHH
Q 011400 408 GYSGSDIRLVSK 419 (487)
Q Consensus 408 G~sg~dI~~L~~ 419 (487)
|- .+++..+++
T Consensus 212 G~-lr~al~~Ld 222 (486)
T PRK14953 212 GG-MRDAASLLD 222 (486)
T ss_pred CC-HHHHHHHHH
Confidence 53 333333333
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=148.89 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=125.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC----------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~---------- 266 (487)
+.+.+++.+|++++|++.+++.|...+... ..++++||+||||+|||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 445667888999999999999999887432 34577999999999999999999998742
Q ss_pred --------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 267 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 267 --------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
.++.++++.. ..-..++.+.+.+... ...|++|||+|.|... .
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A 135 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------A 135 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------H
Confidence 2333332210 1223355555544332 2359999999988422 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. .+..+++|.+|+.+..+.+++++|+. .+.+..|+.++....++..+...+... +..+..++..+.
T Consensus 136 ~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 136 WNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 3568888873 23345666777888999999999996 599999999999988888776544322 223555666666
Q ss_pred CC
Q 011400 408 GY 409 (487)
Q Consensus 408 G~ 409 (487)
|-
T Consensus 212 Gd 213 (605)
T PRK05896 212 GS 213 (605)
T ss_pred Cc
Confidence 53
No 111
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=4.2e-14 Score=146.51 Aligned_cols=246 Identities=25% Similarity=0.349 Sum_probs=159.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g- 282 (487)
..|+|++++|+.+..++.....+..+.... -..+.++||+||||||||++|+++|+.++.+|+.+++..+.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 348999999999998886543222221111 113578999999999999999999999999999999987775 6887
Q ss_pred CcHHHHHHHHHHHH------------------------------------------------------------------
Q 011400 283 DSEKLIKVLFELAR------------------------------------------------------------------ 296 (487)
Q Consensus 283 ~se~~l~~~f~~a~------------------------------------------------------------------ 296 (487)
..+..++.+++.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44555555555550
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 011400 297 ------------------------------------------------------------------------HHAPSTIF 304 (487)
Q Consensus 297 ------------------------------------------------------------------------~~~p~IL~ 304 (487)
..+.+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01346999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhccccccCC
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 373 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~~~ 373 (487)
|||||+++....+. ...-...-++..||..++|-.. ...+|++|++- ..|.+|-|.|..||..++.+.
T Consensus 255 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 333 (443)
T PRK05201 255 IDEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELD 333 (443)
T ss_pred EEcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 99999999764321 1122223477788999987421 22457777664 346667789999999999999
Q ss_pred CCCHHHHHHHHHH----hCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhc---
Q 011400 374 LPDTEARRAMFES----LLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEG--- 435 (487)
Q Consensus 374 ~Pd~eeR~~IL~~----~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~~-------a~rr~~~~le~--- 435 (487)
..+.++...||.. +++.+. .+- .++| |+...|+.+.+.|... -+|++...++.
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~--------~Lf-~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQ--------ALL-ATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHH--------HHH-hhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 9999998888743 221111 000 0122 5666677777766641 23444333332
Q ss_pred -hhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 436 -RQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 436 -~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
.....+... .....|+.+-+...+..+
T Consensus 405 d~~Fe~p~~~-~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 405 DISFEAPDMS-GETVTIDAAYVDEKLGDL 432 (443)
T ss_pred HHhccCCCCC-CCEEEECHHHHHHHHHHH
Confidence 222233332 223558888877776654
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.53 E-value=4.6e-13 Score=147.55 Aligned_cols=174 Identities=20% Similarity=0.265 Sum_probs=113.4
Q ss_pred HhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh--------
Q 011400 193 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 264 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------- 264 (487)
+.+.+....++.+|++++|.+...+.+...+..+ .+.+++|+||||||||++|+.+++..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 4455555667888999999999999887766332 24579999999999999999998765
Q ss_pred --CCcEEEEecccchh-------hccCCcHHH----HHHHHHH----------HHhcCCcEEEechhhhHHhhhcccchh
Q 011400 265 --KTTFFNISASSVVS-------KWRGDSEKL----IKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 265 --~~~~i~v~~~~l~~-------~~~g~se~~----l~~~f~~----------a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
+.+|+.+++..+.. .+.|..... .+..+.. ......++|||||++.|....
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~------ 281 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL------ 281 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH------
Confidence 35789999876521 111111000 0000110 012234799999998875431
Q ss_pred hHHHHHHHHHHHHHhcCCc--------------------------CCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 322 HEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~--------------------------~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
...|+..++.-. .....+++.+||+.++.+++++++||.. +.++++
T Consensus 282 -------Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pl 353 (615)
T TIGR02903 282 -------QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPL 353 (615)
T ss_pred -------HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCC
Confidence 222333332210 1112344445667788899999999965 688889
Q ss_pred CHHHHHHHHHHhCCCCC
Q 011400 376 DTEARRAMFESLLPSQT 392 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~ 392 (487)
+.++...|++..+....
T Consensus 354 s~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 354 TPEDIALIVLNAAEKIN 370 (615)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999876543
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.5e-13 Score=149.48 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=127.2
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|+||+|++.+++.|+..+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 44567888999999999999999988542 245679999999999999999999988542
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHH
Confidence 22222111 0112344444433322 3346999999998842 235
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++. .+..+++|.+|+.+..+.+++++|+.. +.|..++.++...+++..+....... +..+..++..+.|
T Consensus 137 naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 137 NALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 567777773 334466666777788899999999964 88999999999988888775544332 2335556666665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 213 -dlR~alslLd 222 (563)
T PRK06647 213 -SVRDAYTLFD 222 (563)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
No 114
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=2.5e-13 Score=142.03 Aligned_cols=180 Identities=25% Similarity=0.363 Sum_probs=118.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhh------cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-h
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYF------TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-K 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~------~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~ 279 (487)
+-|+|++++++.+...+..+...-... ........++||+||||||||++|+++|..++.+|..+++..+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 347999999999988774332221110 001122468999999999999999999999999999999887753 5
Q ss_pred ccCCc-HHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCcC----C------C
Q 011400 280 WRGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----S------D 343 (487)
Q Consensus 280 ~~g~s-e~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~-~~~i~~~Ll~~ld~~~~----~------~ 343 (487)
|+|.. +..+..++..+ ....++||||||+|.+..++.+....... ...+++.||..|+|... . .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 77764 34444444322 23456899999999998754322111111 12567778888876531 1 1
Q ss_pred CcEEEEEEeCCCC--------------------------------------------------cccHHHHhhccccccCC
Q 011400 344 ELVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVP 373 (487)
Q Consensus 344 ~~VlVIatTn~p~--------------------------------------------------~Ld~aL~rRf~~~i~~~ 373 (487)
...++|.|+|-.. .+.|+++.|++.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 2356677766510 02345555788878888
Q ss_pred CCCHHHHHHHHHH
Q 011400 374 LPDTEARRAMFES 386 (487)
Q Consensus 374 ~Pd~eeR~~IL~~ 386 (487)
+.+.++..+|+..
T Consensus 317 pL~~~~L~~Il~~ 329 (413)
T TIGR00382 317 KLDEEALIAILTK 329 (413)
T ss_pred CCCHHHHHHHHHH
Confidence 8888888888765
No 115
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.52 E-value=3.7e-13 Score=136.32 Aligned_cols=177 Identities=24% Similarity=0.244 Sum_probs=117.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v 271 (487)
|...+.+.+|+|++|.+.+++.|..++... ...+++|+||||||||++++++++++. ..++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 455667788999999999999999887431 123589999999999999999999873 334555
Q ss_pred ecccchhhccCCcHHHHHHHH-HHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCc
Q 011400 272 SASSVVSKWRGDSEKLIKVLF-ELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f-~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 345 (487)
++++.. ....+...+ ..+.. ..+.+|+|||+|.+... ..+.|+..++.... .
T Consensus 75 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~ 132 (319)
T PRK00440 75 NASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---N 132 (319)
T ss_pred cccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---C
Confidence 443321 111122221 22211 22459999999988432 12335555654332 2
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
..+|.++|.+..+.+++.+|+.. +.++.++.++...+++.++....... +..++.+++.+.|
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred CeEEEEeCCccccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 34555777778888889999964 89999999999999998886655432 2335666666655
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.8e-13 Score=139.85 Aligned_cols=183 Identities=17% Similarity=0.184 Sum_probs=118.5
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN------- 270 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~------- 270 (487)
.+..++.+|++|+|++.+++.|+..+... ..++++||+||||+|||++|+++|+.+...-..
T Consensus 7 ~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 7 ARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 34567888999999999999999887542 345679999999999999999999998652100
Q ss_pred ---Eecccc------h-------hhccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHH
Q 011400 271 ---ISASSV------V-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 327 (487)
Q Consensus 271 ---v~~~~l------~-------~~~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~ 327 (487)
-.|..- . ..+.+ .....++.+.+.+.. ....|++|||+|.+...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------- 142 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------- 142 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------
Confidence 011000 0 00011 113445555444421 12359999999988432
Q ss_pred HHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHh
Q 011400 328 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT 406 (487)
Q Consensus 328 i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t 406 (487)
..+.|+..++. .....++|.+|+.+..+.+++++|+. .+.+..++.++-...++..+....... +..++.++..+
T Consensus 143 ~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 143 AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 23446777763 22234455566667888889999995 589999999888888888776544322 22345566666
Q ss_pred cC
Q 011400 407 EG 408 (487)
Q Consensus 407 ~G 408 (487)
.|
T Consensus 219 ~g 220 (397)
T PRK14955 219 QG 220 (397)
T ss_pred CC
Confidence 55
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=6.3e-13 Score=141.48 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=120.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
+.+++.+|+||+|++.+++.|...+... ..++.+|||||||+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 3456788999999999999999988542 245679999999999999999999987432
Q ss_pred --------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 268 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 268 --------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
++.+++... ..-..++.+.+... .....|++|||+|.+... ..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HH
Confidence 223322111 01123333332222 234579999999988432 24
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..++.. ...+++|++|+.+..+.+++++|+.. +.+..++.++....++..+...+...+ ..++.++..+.|
T Consensus 139 n~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 139 NSLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHHhhcC---CCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888742 23455666778888899999999954 899999999988888887765443322 234556666654
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.52 E-value=6.2e-13 Score=128.86 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=123.4
Q ss_pred CCCCCCccc--CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 202 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 202 ~~~~~~di~--G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
++.+|++++ +.+.+...+.++... .....+++|+||+|||||+||+++++++ +.+++.+++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 456688876 345666666665531 1244689999999999999999999976 678888887765
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p- 355 (487)
... +. ....+.+|+|||+|.+... ....|+..++........+++++++..|
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 321 11 1223579999999987321 1122444444333333333444333333
Q ss_pred -CcccHHHHhhc--cccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 356 -WELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 356 -~~Ld~aL~rRf--~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
..+.+.+++|| ...+.+++|+.+++..+++..........+ ..++.+++...| +.+++..+++.....+..
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~---- 209 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLE---- 209 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHH----
Confidence 23568888898 467899999998998888877654443322 224455554333 344444444432221111
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...+||...++++|.
T Consensus 210 ---------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 ---------------QKRPVTLPLLREMLA 224 (227)
T ss_pred ---------------hCCCCCHHHHHHHHh
Confidence 124689999999886
No 119
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.7e-13 Score=148.28 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=130.1
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS---- 272 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~---- 272 (487)
+.+.+++.+|+||+|++.+++.|...+... +.++++||+||+|+|||++|+.+|+.+.......+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 344567788999999999999999988542 34678999999999999999999998864321111
Q ss_pred ---------cccchhh-------c---cCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 273 ---------ASSVVSK-------W---RGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 273 ---------~~~l~~~-------~---~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
|..+... . ....-..++.+++.+... ...|++|||+|.|.. ...
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHH
Confidence 0000000 0 001234566666655432 346999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. ...+.+|.+|+.++.+.+.+++|+. .+.|..++.++...+++..+.......+ ..++.++..+.|
T Consensus 150 naLLKtLEeP---p~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 150 NALLKTLEEP---PPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHHhC---CCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5677777732 3335556667777788889999995 5999999999999999988866554433 235556666665
Q ss_pred CcHHHHHHHHH
Q 011400 409 YSGSDIRLVSK 419 (487)
Q Consensus 409 ~sg~dI~~L~~ 419 (487)
+.+++..++.
T Consensus 226 -dlr~al~~Ld 235 (598)
T PRK09111 226 -SVRDGLSLLD 235 (598)
T ss_pred -CHHHHHHHHH
Confidence 3444444443
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.51 E-value=2.8e-13 Score=131.02 Aligned_cols=195 Identities=22% Similarity=0.322 Sum_probs=116.3
Q ss_pred CCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 011400 201 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~ 272 (487)
.|..+|+.++ | .+.+..........+- .....++||||+|+|||+|++++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3677899975 5 3445555555443321 123469999999999999999999875 57789999
Q ss_pred cccchhhccCCcHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+.++...+...... .+..+.+..+ ...+|+|||++.+..+ ......|...++.....+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 88876554322211 1222222222 3479999999998643 1233445555554444444 345555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~dI~~L~~~ 420 (487)
...|.. +++.+.+||. ..+.+..|+.++|..|++..+.......+.+ ++.+++...+ +.++|..++..
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 566654 6788999985 4678899999999999999987766654333 4556666553 44556555544
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.5e-13 Score=139.20 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=122.3
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---- 273 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~---- 273 (487)
...+++.+|+|++|++.+++.+...+... ..++++|||||||+|||++|+++++.+..+.....+
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34567888999999999999999988542 345789999999999999999999987542111000
Q ss_pred ---ccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 274 ---SSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 274 ---~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
.++ ..........++.+++.+... .+.||+|||+|.+... ..+.|+..++.. ....
T Consensus 77 ~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~~---~~~~ 139 (367)
T PRK14970 77 FNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP---PAHA 139 (367)
T ss_pred cceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhCC---CCce
Confidence 001 001112234566666655432 3469999999977432 235566666632 2234
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
++|.+++.+..+.+++.+|+. .+.+..|+.++...++...+...+... +..++.++..+.|
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 455567777889999999995 489999999999988888776655432 2335556665554
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3.2e-13 Score=145.22 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=129.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 266 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~----------- 266 (487)
...+++.+|++++|++.+++.|...+... ..++.+|||||+|+|||++|+++|+.+..
T Consensus 5 ~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567888999999999999999988442 34566899999999999999999998732
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++.+- ..-..++.+....... ...|++|||+|.+.. ...
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~ 134 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EAF 134 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 1333332110 1124455555443211 235999999988843 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
+.|+..++.. +..+.+|.+|+.+..+.+++++|+. .+.|..++.++....++..+...+... +..+..++..+.|
T Consensus 135 NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 135 NALLKTLEEP---PSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHHHHHhhc---CCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 3335566667778999999999985 589999999998888888776654432 2335566666665
Q ss_pred CcHHHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKEAA 422 (487)
Q Consensus 409 ~sg~dI~~L~~~A~ 422 (487)
+.+++..++..+.
T Consensus 211 -dlR~alnlLdqai 223 (535)
T PRK08451 211 -SLRDTLTLLDQAI 223 (535)
T ss_pred -cHHHHHHHHHHHH
Confidence 4455555554443
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=6.8e-13 Score=143.76 Aligned_cols=166 Identities=16% Similarity=0.232 Sum_probs=109.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|... -..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 5678999998887665433222222223322 2346899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-C---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
. ....|+..++.....+..+ || |++.+ . .+++.|++||. ..+.+..||.+.|.+||+..+.
T Consensus 394 ~-----------tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S-----------TQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H-----------HHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1122334444333333333 33 55554 3 47889999994 5568889999999999999987
Q ss_pred CCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011400 390 SQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 421 (487)
Q Consensus 390 ~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A 421 (487)
....... ..++.|+....+ +.++|..++...
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 7655433 235667777664 345565555543
No 124
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.47 E-value=1.2e-12 Score=130.11 Aligned_cols=134 Identities=25% Similarity=0.276 Sum_probs=91.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------chhhccCCcHHH-HHH-------------------HHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFE 293 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~------l~~~~~g~se~~-l~~-------------------~f~ 293 (487)
..++||+||||||||++|+++|+.+|.+++.+++.. +.+.+.+..... +.. .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 223332221111 111 111
Q ss_pred HHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----C---------CCCcEEEEEEeCCCC----
Q 011400 294 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----Q---------SDELVFVLAATNLPW---- 356 (487)
Q Consensus 294 ~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----~---------~~~~VlVIatTn~p~---- 356 (487)
.|.. .+.+|+|||++.+.++ +.+.|+..++.-. . ......||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 2469999999986432 3344555554211 0 112456888999763
Q ss_pred -cccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 357 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 357 -~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
.+++++++|| ..+.++.|+.++..+|++...
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 5789999999 558999999999999999875
No 125
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=144.23 Aligned_cols=178 Identities=20% Similarity=0.220 Sum_probs=123.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
..+++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+...
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 4556788999999999999999988642 234579999999999999999999998652
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++.. .......++.+++.+... ...|++|||+|.|.. ..
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a 137 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------AA 137 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------HH
Confidence 2222211 123345667777665432 235999999998842 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~ 407 (487)
.+.|+..++. ....+++|++|+.+..+-+.+++|+.. +.|..++.++....+...+....... ...+..+++.+.
T Consensus 138 ~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~ 213 (620)
T PRK14948 138 FNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQ 213 (620)
T ss_pred HHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 4668888873 233455666777888888999999955 88888888887777777665443322 223555666666
Q ss_pred CCc
Q 011400 408 GYS 410 (487)
Q Consensus 408 G~s 410 (487)
|-.
T Consensus 214 G~l 216 (620)
T PRK14948 214 GGL 216 (620)
T ss_pred CCH
Confidence 543
No 126
>PRK08727 hypothetical protein; Validated
Probab=99.47 E-value=2.6e-12 Score=125.36 Aligned_cols=146 Identities=23% Similarity=0.273 Sum_probs=92.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
..++|+||+|||||+|++++++++ +....+++..++.. .+...++... ...+|+|||++.+.....+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 459999999999999999998875 56666776544321 2223333332 3469999999988643211
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhc--cccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf--~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
. ..++..++.....+. -+|+++...|.. +++++++|| ...+.++.|+.+++.++++.......
T Consensus 112 --------~---~~lf~l~n~~~~~~~-~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 112 --------E---VALFDFHNRARAAGI-TLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred --------H---HHHHHHHHHHHHcCC-eEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 123333332222222 233334445554 478999997 45678999999999999998765443
Q ss_pred CC-CCCCHHHHHHHhcC
Q 011400 393 GE-ESLPYDLLVERTEG 408 (487)
Q Consensus 393 ~~-~~~~l~~la~~t~G 408 (487)
.. ++..++.|++.+.|
T Consensus 180 l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 180 LALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 33 22335667777664
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.47 E-value=3.4e-13 Score=143.53 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=140.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE--EEEec-
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNISA- 273 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~--i~v~~- 273 (487)
+.+.+++.+|+|++|++.+.+.|...+..- +-.+++||.||.|||||++||.+|+.+++.- ..-.|
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 456678888999999999999999998653 3346799999999999999999999886541 10011
Q ss_pred -----ccchhh-------ccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 274 -----SSVVSK-------WRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 274 -----~~l~~~-------~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
.++... +.+ ..-..++.+.+.+.. ..+.|.+|||+|.|. ....+.||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 111100 001 122345555555432 335699999998764 456777888
Q ss_pred HhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 011400 335 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 413 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~d 413 (487)
.++ ..+..|.+|.+|..+..++..+++|+.+ +.|..-+.++-...|...+.......+.+ +..+|+..+| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 887 4556688888999999999999999966 88888888898888998887776664433 5666776666 4456
Q ss_pred HHHHHHHHHh
Q 011400 414 IRLVSKEAAM 423 (487)
Q Consensus 414 I~~L~~~A~~ 423 (487)
...++..+..
T Consensus 217 alslLDq~i~ 226 (515)
T COG2812 217 ALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 128
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.3e-13 Score=146.55 Aligned_cols=187 Identities=25% Similarity=0.386 Sum_probs=144.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--- 264 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el--- 264 (487)
...++..+++.......+++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|...
T Consensus 151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g 218 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNG 218 (786)
T ss_pred hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence 345567777878888889999999999999999988653 33678999999999999999999977
Q ss_pred -------CCcEEEEecccchh--hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 265 -------KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 265 -------~~~~i~v~~~~l~~--~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+..++.++.+.+.. +|.|+.++.++.+.+......+.||||||+|.+.+.....+...++.+-++..|
T Consensus 219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--- 295 (786)
T COG0542 219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--- 295 (786)
T ss_pred CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---
Confidence 57788998888874 799999999999999999888899999999999886443221122333333333
Q ss_pred hcCCcCCCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC
Q 011400 336 MDGLTQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES 396 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~ 396 (487)
.++. +-+|++|+.. -+-|+||-|||.. |.+..|+.++-..||+.+-..+...+.
T Consensus 296 -----ARGe-L~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 296 -----ARGE-LRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred -----hcCC-eEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 2333 4456666433 2468999999977 999999999999999988765554444
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=6.9e-13 Score=141.16 Aligned_cols=168 Identities=13% Similarity=0.202 Sum_probs=108.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHH---HHHHHHHHHHhcCCcEEEechhhhH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~---~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
.++++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3569999999999999999999965 4678899988877665433221 122222222 34579999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFE 385 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~ 385 (487)
.++. .....|...++.....+. . +|.|++. |. .+++.+++||. ..+.+..|+.++|.+|++
T Consensus 219 ~~k~-----------~~~e~lf~l~N~~~~~~k-~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYKE-----------KTNEIFFTIFNNFIENDK-Q-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHcCC-c-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 5431 112234444443333333 2 3445544 43 36789999995 567788899999999999
Q ss_pred HhCCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011400 386 SLLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAM 423 (487)
Q Consensus 386 ~~l~~~~~---~~~~~l~~la~~t~G~sg~dI~~L~~~A~~ 423 (487)
..+..... -.+..++.|+..+.| +.+.+..++..+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~ 325 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNF 325 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHH
Confidence 99876442 122235667777775 45666666665543
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=4e-12 Score=139.41 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=119.9
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE--------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-------- 270 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-------- 270 (487)
+.+++.+|++|+|++.+++.|+..+... .-++++||+||+|||||++|+.+|+.+...--.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 4567888999999999999999877442 345679999999999999999999998652100
Q ss_pred --Eeccc------ch-------hhccC---CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 271 --ISASS------VV-------SKWRG---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 271 --v~~~~------l~-------~~~~g---~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
-.|.. +. ..+.+ .....++.+.+.+.. ....|++|||+|.+... .
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------A 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------H
Confidence 00100 00 00111 112345555444421 22359999999988432 2
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~ 407 (487)
.+.|+..++.. ...+++|.+|+.+..+.+.+++|+. .+.|..++.++-...++..+...... .+..++.++..+.
T Consensus 144 ~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 144 FNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 45688888732 2334455566677888889999994 58999999998888888777654432 2233566666666
Q ss_pred C
Q 011400 408 G 408 (487)
Q Consensus 408 G 408 (487)
|
T Consensus 220 G 220 (620)
T PRK14954 220 G 220 (620)
T ss_pred C
Confidence 5
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.1e-12 Score=141.89 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=123.4
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 267 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------- 267 (487)
.+.+++.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.+...
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35667888999999999999999887542 234568999999999999999999988532
Q ss_pred ---------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHH
Q 011400 268 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 328 (487)
Q Consensus 268 ---------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i 328 (487)
++.++... ......++.+.+.+.. ....|++|||+|.|.. ..
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~a 136 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------AA 136 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------HH
Confidence 12222110 1122334444443332 2245999999998742 23
Q ss_pred HHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhc
Q 011400 329 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 407 (487)
Q Consensus 329 ~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~ 407 (487)
.+.|+..++... ..+++|.+++.++.+.+.+++|+.. +.|..++..+...+++..+...+...+ ..+..++..+.
T Consensus 137 ~naLLk~LEepp---~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 137 FNALLKTLEEPP---PHAIFILATTEVHKVPATILSRCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHHhcCC---CCeEEEEEeCChhhhhHHHHhccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 455777777432 3355566677777888899999954 889999999988888887765543322 22555666666
Q ss_pred CCcHHHHHHHH
Q 011400 408 GYSGSDIRLVS 418 (487)
Q Consensus 408 G~sg~dI~~L~ 418 (487)
| +.+++.+++
T Consensus 213 G-dlr~al~~L 222 (585)
T PRK14950 213 G-SMRDAENLL 222 (585)
T ss_pred C-CHHHHHHHH
Confidence 5 334443333
No 132
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.6e-12 Score=145.64 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=136.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-----hcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-----~~~ 281 (487)
..|+|++++++.|.+.+...... + .....|..++||+||||||||.+|+++|..++.+++.++++++.. ...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~g--l-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAG--L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhcc--c-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 35899999999999988643210 0 001234457999999999999999999999999999999887643 222
Q ss_pred CCcHH-----HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--cC------CCCcEEE
Q 011400 282 GDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------SDELVFV 348 (487)
Q Consensus 282 g~se~-----~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~~~~VlV 348 (487)
|.... .-..+.+..+....+||||||||++.+ .+.+.|+..|+.- .. .-.++++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 21110 011233344555668999999999853 3566688877632 11 1145778
Q ss_pred EEEeCCC-------------------------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-------CCCCCC
Q 011400 349 LAATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEES 396 (487)
Q Consensus 349 IatTn~p-------------------------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-------~~~~~~ 396 (487)
|+|||.- ..+.|.++.|++.++.|++.+.++..+|+...+.. ......
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~ 681 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLE 681 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCce
Confidence 8899832 12567888899999999999999999998876532 122222
Q ss_pred CC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011400 397 LP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 397 ~~---l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
.+ ++.|++.. ..|-.+.|+.+++.-...++.+.
T Consensus 682 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 682 VSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred ECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 22 34455432 23445677777776666666654
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.44 E-value=1.1e-12 Score=134.03 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=101.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcE--EEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~--i~v~ 272 (487)
.+..|++|+|++++++.|.-.+..+ ...|+||+|+||||||++|+++++-+ +.++ ..+.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 3567999999999999888654321 22589999999999999999999988 2211 1110
Q ss_pred c-ccc--------h---------------hhccCCc--HHHHH---HHHHHH--HhcCCcEEEechhhhHHhhhcccchh
Q 011400 273 A-SSV--------V---------------SKWRGDS--EKLIK---VLFELA--RHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 273 ~-~~l--------~---------------~~~~g~s--e~~l~---~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
+ .++ . +...|.. +..+. ..|..- .....++|||||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 000 0 0011100 00000 001100 011126999999998753
Q ss_pred hHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCCH-HHHHHHHHHhC
Q 011400 322 HEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 388 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd~-eeR~~IL~~~l 388 (487)
.+++.|+..|+.-. ..+..+++++++|..+ .+++++++||...+.++.|.. ++|.+|++...
T Consensus 143 -----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 -----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 34455666665321 1234577777777644 589999999999999988855 89999998854
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=6.6e-12 Score=122.66 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=98.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
+.++|+||+|||||+|++++++++ +..+++++..++.... ..+.+.... ..+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 679999999999999999999865 5778888887765421 122222232 26999999998754311
Q ss_pred cchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
....|+..++.....+ ..++++++..|.. ..+.+++||. ..+.+..|+.+++..+++.......
T Consensus 115 ----------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ----------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1123444444333333 3456666655543 3688999994 5567789999999999996554433
Q ss_pred CCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 393 GEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 393 ~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
... +..++.+++...+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 322 2235556666654 3334444333
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=3.1e-12 Score=112.50 Aligned_cols=138 Identities=40% Similarity=0.622 Sum_probs=90.9
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHH
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
|.+...+.+...+.. ...++++++||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666665533 235689999999999999999999998 88999998877654432211111
Q ss_pred ---HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC---CCcEEEEEEeCCCC--ccc
Q 011400 288 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW--ELD 359 (487)
Q Consensus 288 ---l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~---~~~VlVIatTn~p~--~Ld 359 (487)
............+.+|+|||++.+... ....++..+...... ...+.+|++++... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 122233344556789999999987321 112244444433221 34567788888776 788
Q ss_pred HHHHhhccccccCC
Q 011400 360 AAMLRRLEKRILVP 373 (487)
Q Consensus 360 ~aL~rRf~~~i~~~ 373 (487)
+.+.+||..++.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998766665
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.1e-12 Score=130.28 Aligned_cols=224 Identities=21% Similarity=0.239 Sum_probs=141.7
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEecccchhhc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW 280 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-----~i~v~~~~l~~~~ 280 (487)
-+.+.+.+...+++...+.-.+.. ..|.++++|||||||||.+++.+++++... +++|||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 355899999999999887554432 234569999999999999999999998433 8999997765432
Q ss_pred c---------------CCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 281 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 281 ~---------------g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
. |.+ ......+++.... ....||++||+|.|..+.+ .++-.|+...+.. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~---~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN---K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc---c
Confidence 1 222 2233333333333 3456999999999986532 3333344433322 4
Q ss_pred CcEEEEEEeCCCC---cccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCCCC--CC-HHHHHHHhcCCcHHHHH-
Q 011400 344 ELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEES--LP-YDLLVERTEGYSGSDIR- 415 (487)
Q Consensus 344 ~~VlVIatTn~p~---~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~--~~-l~~la~~t~G~sg~dI~- 415 (487)
.++.+|+.+|..+ .+|+.+.+++. ..|.|++++.+|...|++........... .+ ++.+|......+| |.+
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 5688899998874 58899999874 45799999999999999998764322221 12 3333333222222 322
Q ss_pred --HHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 416 --LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 416 --~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.+++.|+..|-++ .. ..++.+++.+|...+.+....
T Consensus 234 aidilr~A~eiAe~~---------------~~---~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 234 AIDILRRAGEIAERE---------------GS---RKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred HHHHHHHHHHHHHhh---------------CC---CCcCHHHHHHHHHHhhHHHHH
Confidence 2444444443332 11 347888888886666555443
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=5.5e-12 Score=142.10 Aligned_cols=204 Identities=22% Similarity=0.235 Sum_probs=135.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~------- 279 (487)
+.|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 56899999999998887542110 01111344468999999999999999999999999999998876432
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcE
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 346 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~V 346 (487)
|+|..+ ...+.+..+....+||+|||+|.+.+ .+.+.|++.+++-. ..-.+.
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 223221 12234445566778999999998753 35566777777431 112346
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC-------CCC
Q 011400 347 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 394 (487)
Q Consensus 347 lVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-------~~~ 394 (487)
++|+|||... .+.|.++.|++.++.|.+.+.++..+|++..+... ...
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887641 14677888999999999999999999999887431 111
Q ss_pred CC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 011400 395 ES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 395 ~~---~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
.. ..++.+++. ...|-.+.|+.+++.....++.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 11 123445554 23455566776666666655554
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.3e-11 Score=135.72 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=123.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC------------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 266 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~------------ 266 (487)
+.+++.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+.+|+.+.+
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 3467788999999999999999988542 34567999999999999999999998753
Q ss_pred -------------cEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 267 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 267 -------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
.++.+++.+ ......++.+.+.+... ...|++|||+|.|.. ...
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHH
Confidence 222332211 11234566666555432 234999999998842 234
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+.|+..|+.. +...++|.+|+.+..+-+++++|+.. +.|..++.++-...++..+...+...+ ..++.++..+.|
T Consensus 139 naLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 139 NAFLKTLEEP---PSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5688888743 23344556666778899999999955 999999999988888887766555433 235667777765
No 139
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.37 E-value=1.5e-11 Score=126.24 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=104.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEe-
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS- 272 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~v~- 272 (487)
.+...|++|+|++++|..|.-.+..| ...+|||.||+|||||++||++++.+. .+|....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 34567999999999999999887664 235899999999999999999988662 2222000
Q ss_pred -----cccchh---------------hc----cCCcHHHH------HHHHHHHH---------hcCCcEEEechhhhHHh
Q 011400 273 -----ASSVVS---------------KW----RGDSEKLI------KVLFELAR---------HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 273 -----~~~l~~---------------~~----~g~se~~l------~~~f~~a~---------~~~p~IL~IDEiD~L~~ 313 (487)
+..+.. .+ .|.++..+ ...+.... ....++|||||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 000000 00 11122211 11111110 11237999999998864
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcC---------Cc-CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCC-HHHHH
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARR 381 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd-~eeR~ 381 (487)
. +++.|+..|+. .. ..+.++++|+|.|..+ .+.+++++||...+.+..|+ .+++.
T Consensus 159 ~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 159 H-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHH
Confidence 3 33446666643 11 1233566777666554 59999999999999999997 69999
Q ss_pred HHHHHhC
Q 011400 382 AMFESLL 388 (487)
Q Consensus 382 ~IL~~~l 388 (487)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998864
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.37 E-value=2e-11 Score=126.75 Aligned_cols=167 Identities=17% Similarity=0.284 Sum_probs=112.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+.+.++||||+|+|||+|++|++++. +..+++++...+...++......-..-|+... +-.+++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999987 45688888888776665444333333344444 447999999999976
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhC
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l 388 (487)
+.. ...+|...+..+...+. -+|+++...|.. +.+.|++||. ..+.+.+|+.+.|..||+...
T Consensus 190 k~~-----------~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KER-----------TQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Chh-----------HHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 522 23334455554444444 345555566655 5589999995 556788999999999999977
Q ss_pred CCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHH
Q 011400 389 PSQTGEESL-PYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 389 ~~~~~~~~~-~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
......... .+..+|..... +.+++..++..
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~ 289 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNR 289 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHH
Confidence 666655333 35556666553 34455544443
No 141
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.35 E-value=3.2e-11 Score=115.26 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=133.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+.+.+.+|+|.+.+|+.|.+....... ..|.++|||||..|||||+|+||+.+++ +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 4557799999999999999987754432 2577899999999999999999999988 6779999887773
Q ss_pred hhccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-CcCCCCcEEEEEEeCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 355 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-~~~~~~~VlVIatTn~p 355 (487)
.+-.+++..+.. ..-|||+||+-- ..+....+. |-..++| +...+.+|+|.+|+|+.
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLSF--------e~gd~~yK~----LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLSF--------EEGDDAYKA----LKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCCC--------CCCchHHHH----HHHHhcCCcccCCCeEEEEEecCCc
Confidence 233445555542 346999999821 111122222 4445554 46777889999999987
Q ss_pred CcccH----------------------HHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHH----HHHHhcC
Q 011400 356 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 408 (487)
Q Consensus 356 ~~Ld~----------------------aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~----la~~t~G 408 (487)
..|++ ++.+||+..+.|.+++.++-..|+..+++......+. .++. .|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 55431 2445999999999999999999999999877665432 2222 2333345
Q ss_pred CcHHHHHHHHHH
Q 011400 409 YSGSDIRLVSKE 420 (487)
Q Consensus 409 ~sg~dI~~L~~~ 420 (487)
-||+--.+.++.
T Consensus 265 RSGR~A~QF~~~ 276 (287)
T COG2607 265 RSGRVAWQFIRD 276 (287)
T ss_pred CccHhHHHHHHH
Confidence 666554444443
No 142
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=3.5e-13 Score=141.76 Aligned_cols=224 Identities=24% Similarity=0.301 Sum_probs=149.2
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.....+|++|+|......++.+.+... ...+..|||.|.+||||..+|++|.+.+ +.||+.+||+.+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 345678999999999888888776432 2455689999999999999999999977 679999999766
Q ss_pred hhh-------------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-----
Q 011400 277 VSK-------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----- 338 (487)
Q Consensus 277 ~~~-------------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----- 338 (487)
-.. |.|+...--..+|+.|.. +.||||||..|.. .++..||..++.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-------------~LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-------------PLQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-------------HHHHHHHHHHhhceEEe
Confidence 321 223222223345666555 7999999977642 344456666652
Q ss_pred ---CcCCCCcEEEEEEeCCCC--ccc-----HHHHhhccccccCCCCCHHHHHHHHHHh----CCCCCCCCCCCHHHHHH
Q 011400 339 ---LTQSDELVFVLAATNLPW--ELD-----AAMLRRLEKRILVPLPDTEARRAMFESL----LPSQTGEESLPYDLLVE 404 (487)
Q Consensus 339 ---~~~~~~~VlVIatTn~p~--~Ld-----~aL~rRf~~~i~~~~Pd~eeR~~IL~~~----l~~~~~~~~~~l~~la~ 404 (487)
.....-.|.||+|||+.- .+. +.|.=|.. ++.+..|...+|.+-+..+ +.+... ...+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~-------~~~~ 443 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSR-------RYGR 443 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHH-------HcCC
Confidence 233334588999999851 122 22222663 3778888887777544333 221111 1223
Q ss_pred HhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH-HHHhc
Q 011400 405 RTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 462 (487)
Q Consensus 405 ~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~-~AL~~ 462 (487)
...|.++..+..|.+..|.+++|++.+.+++.......+.. |+.+|+- .++..
T Consensus 444 ~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 444 NVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred CcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 35678999999999999999999999988877654433322 5666655 44444
No 143
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4.7e-11 Score=121.56 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=115.7
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecccc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 276 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--------~~i~v~~~~l 276 (487)
+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.+-. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 5899999999999999987432 34567899999999999999999998732 222332210
Q ss_pred hhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 277 VSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
+. .-.-..++.+.+.+.. ....|++||++|.+... ..+.|+..++. .+..+++|.+|
T Consensus 70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-------------a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-------------AQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-------------HHHHHHHHhcC---CCCCeEEEEEe
Confidence 01 1122345555543322 23459999999888422 34568888873 23335555666
Q ss_pred CCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 353 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 353 n~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
+.++.+.+.+++|+. .+.+..|+.++....++..+... ....++.++..+.|..+.
T Consensus 131 ~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~~ 186 (313)
T PRK05564 131 ENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPGK 186 (313)
T ss_pred CChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHHH
Confidence 788999999999995 58999999998888887654311 122244566666664443
No 144
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5.4e-11 Score=122.74 Aligned_cols=202 Identities=15% Similarity=0.164 Sum_probs=126.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------cEEE-Eec
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFN-ISA 273 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~~i~-v~~ 273 (487)
.+..+++|+|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.+.. +... ..|
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4567999999999999999988543 34567999999999999999999998844 1100 011
Q ss_pred ---c-----------cch---hhc--------cCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHH
Q 011400 274 ---S-----------SVV---SKW--------RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA 324 (487)
Q Consensus 274 ---~-----------~l~---~~~--------~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~ 324 (487)
. ++. ..+ ..-+-..++.+.+... .....|++|||+|.|...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~---------- 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN---------- 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH----------
Confidence 0 000 000 0011233333333222 233469999999988432
Q ss_pred HHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 011400 325 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE 404 (487)
Q Consensus 325 ~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~ 404 (487)
..+.|+..++.. ....++|..|+.|+.+.+.+++|+ ..+.+++|+.++-..+++....... ..+..+..+++
T Consensus 157 ---aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 157 ---AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred ---HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 345588888742 223445556777888889999999 5699999999999999988532211 11222456677
Q ss_pred HhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 405 RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 405 ~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
.+.|.....+ .+.........+.....+
T Consensus 229 ~s~G~pr~Al-~ll~~~~~~~~~~~~~~l 256 (351)
T PRK09112 229 RSKGSVRKAL-LLLNYGGLEIIATIDQLL 256 (351)
T ss_pred HcCCCHHHHH-HHHhcCcHHHHHHHHHHH
Confidence 7776555444 444444444333333333
No 145
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.31 E-value=1.8e-11 Score=116.45 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=110.5
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-C----CcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~----~~~i~v 271 (487)
|.+.+++..+.||+|.++..+.|.-+... ..-.+++|.|||||||||-+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 66778888899999999999999876643 123479999999999999999999988 3 235677
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHh-cCC---cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARH-HAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~-~~p---~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
++++-.+- ..-+.--..|.+-+- ..| .|+++||+|++....+ ..|-..|+-.++.. .
T Consensus 85 NASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-------------QAlRRtMEiyS~tt---R 145 (333)
T KOG0991|consen 85 NASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-------------QALRRTMEIYSNTT---R 145 (333)
T ss_pred cCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH-------------HHHHHHHHHHcccc---h
Confidence 77664321 111222234444333 222 4999999999864321 11333333223332 2
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHH-HHHHHHHhCCCCCCCCCCCHHHHHHHhcC
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEA-RRAMFESLLPSQTGEESLPYDLLVERTEG 408 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ee-R~~IL~~~l~~~~~~~~~~l~~la~~t~G 408 (487)
+..++|....+-+++.+|+.. +.+...+.++ ...+++..-.+...-.+.-++.+.-..+|
T Consensus 146 FalaCN~s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhhcchhhhhhhHHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 567899999999999999855 5554444443 33333333222222223334544444444
No 146
>PHA02244 ATPase-like protein
Probab=99.31 E-value=7.4e-11 Score=120.83 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=79.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc---CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR---GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~---g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
...+|||+||||||||++|+++|..++.+|+.++...-..... .........-+-.+. ..+++|+|||++.+.+..
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 3457999999999999999999999999999998421111111 111111111122222 235799999999875432
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-----------CcccHHHHhhccccccCCCCCHHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEA 379 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-----------~~Ld~aL~rRf~~~i~~~~Pd~ee 379 (487)
... ....+-..++...++.......+.+|+|+|.+ ..+++++++||. .+.++.|+..|
T Consensus 197 q~~-----L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~~E 265 (383)
T PHA02244 197 LII-----INSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEKIE 265 (383)
T ss_pred HHH-----HHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcHHH
Confidence 110 00000011111222222223457788999974 358999999995 58999998433
No 147
>PRK06620 hypothetical protein; Validated
Probab=99.31 E-value=6.7e-11 Score=114.04 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=99.1
Q ss_pred CCCCCCCcccCcH---HHHHHHHHHHhccccCchhhcCCCCC-CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 201 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 201 ~~~~~~~di~G~e---~~k~~L~e~l~~~l~~~~~~~~~~~~-~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.+..+|++++--+ .+...++++...+- ..| .+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~---------~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGFG---------VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHccc---------cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 4566788865433 35555555432110 122 2679999999999999999999987753322 1110
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
. ...+ ....+|+|||+|.+- .. .|...++.+...+. .++++++..|.
T Consensus 79 -------~----~~~~-----~~~d~lliDdi~~~~-------------~~---~lf~l~N~~~e~g~-~ilits~~~p~ 125 (214)
T PRK06620 79 -------N----EEIL-----EKYNAFIIEDIENWQ-------------EP---ALLHIFNIINEKQK-YLLLTSSDKSR 125 (214)
T ss_pred -------c----hhHH-----hcCCEEEEeccccch-------------HH---HHHHHHHHHHhcCC-EEEEEcCCCcc
Confidence 0 0111 123699999998441 01 13333332223333 55666666664
Q ss_pred c--ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcC
Q 011400 357 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEG 408 (487)
Q Consensus 357 ~--Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G 408 (487)
. + +++++|+. ..+.+..|+.+++..+++..+....... +..++.|++...+
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR 181 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 3 6 78999995 3588899999999999998876544332 2335667776664
No 148
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.31 E-value=6e-11 Score=121.56 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=99.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEE--------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 269 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i-------- 269 (487)
.|..|+|++++|..|.-.+..| ...+++|.|+||+|||+++++++.-+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987766543 23579999999999999999999876 22221
Q ss_pred -EEecc-------------------cch-----hhccCCcH--HHH--------HHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 270 -NISAS-------------------SVV-----SKWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 270 -~v~~~-------------------~l~-----~~~~g~se--~~l--------~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
..+|. ++- +...|... +.+ ..++.. ...++|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 00000 000 01111110 000 001111 12379999999987433
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCC---------c-CCCCcEEEEEEeCCCC-cccHHHHhhccccccCCCCCH-HHHHH
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 382 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~---------~-~~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~Pd~-eeR~~ 382 (487)
+++.|+..|+.- . ..+.+++++++.|..+ .+++++++||...+.++.|+. ++|.+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 344466666421 1 1223567777777554 599999999999999999865 88999
Q ss_pred HHHHhC
Q 011400 383 MFESLL 388 (487)
Q Consensus 383 IL~~~l 388 (487)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.30 E-value=4.1e-11 Score=136.43 Aligned_cols=204 Identities=22% Similarity=0.234 Sum_probs=132.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
+.|+|++.+++.+.+.+...... ......|...+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 56899999999999988553210 00011233348999999999999999999998 457889988776432
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------CC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 343 (487)
|+|..+. ..+....+..+++||+|||||++.+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3333221 1233445667789999999987643 34455677776321 1 11
Q ss_pred CcEEEEEEeCCCCc-----------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC---
Q 011400 344 ELVFVLAATNLPWE-----------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~-----------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~--- 391 (487)
.+.+||+|||.... +.+++++|++ ++.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 34678889885210 4567777996 68889899999999998876432
Q ss_pred -----CCCCCC---CHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHHH
Q 011400 392 -----TGEESL---PYDLLVERTEG--YSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 392 -----~~~~~~---~l~~la~~t~G--~sg~dI~~L~~~A~~~a~rr~ 429 (487)
...... .++.|++...+ |-.+.+..+++.-...++.+.
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~ 834 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQ 834 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 221111 24456665433 456777777776666666553
No 150
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=1.9e-10 Score=115.45 Aligned_cols=129 Identities=22% Similarity=0.157 Sum_probs=83.4
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC------------CCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~------------p~~Ld~aL~rRf~ 367 (487)
|+||||||++.|- -..++.|-..|+ ..-.++ ||.+||+ |+.++..|++|.
T Consensus 292 pGVLFIDEvHmLD-------------IE~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLD-------------IECFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhh-------------HHHHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 7899999998762 223333444444 222334 5567765 456899999999
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 446 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~ 446 (487)
.+|...+++.++-++|++..........+ ..++.|+.....-|-+.--+|+.-|...|.+|
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------------------ 415 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------------------ 415 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------------------
Confidence 56888889999999999999877666533 23566666555444444444544444444443
Q ss_pred CCCCCCHHHHHHHHhccC
Q 011400 447 QIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 447 ~~~~It~eD~~~AL~~~~ 464 (487)
....|..+|++.|-.-+-
T Consensus 416 g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 GSKRVEVEDVERAKELFL 433 (450)
T ss_pred CCCeeehhHHHHHHHHHh
Confidence 113488999999987554
No 151
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.29 E-value=2.5e-11 Score=134.49 Aligned_cols=156 Identities=22% Similarity=0.298 Sum_probs=105.4
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh--------------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 264 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------------------- 264 (487)
.|.+|+|++.+|..|.-....+ ...+|||.|+||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999998887766543 12479999999999999999999987
Q ss_pred ---------------CCcEEEEecccchhhccCCc--HHHHH--------HHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 265 ---------------KTTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 265 ---------------~~~~i~v~~~~l~~~~~g~s--e~~l~--------~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
..+|+.+.+........|.. ++.+. .++.. ...+||||||++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCHH-----
Confidence 24666666554333333321 11110 01111 12269999999988533
Q ss_pred hhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCC-CcccHHHHhhccccccCCCC-CHHHHHHHHHHh
Q 011400 320 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 387 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p-~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~ 387 (487)
+++.|+..|+.-. .....+.+|+|+|.. ..+.++|++||...+.++.+ +.+++.++++..
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 4455777775211 112347788888853 35889999999988888776 567888888765
Q ss_pred C
Q 011400 388 L 388 (487)
Q Consensus 388 l 388 (487)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 152
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=6.2e-11 Score=122.89 Aligned_cols=183 Identities=18% Similarity=0.166 Sum_probs=119.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------------- 267 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-------------- 267 (487)
.+..+++|+|++.+++.|...+... +.++.+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 5667999999999999999988552 345689999999999999999999987211
Q ss_pred --------------------EEEEecc--cchhhc-cCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccch
Q 011400 268 --------------------FFNISAS--SVVSKW-RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 268 --------------------~i~v~~~--~l~~~~-~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
++.+... +-.... ..-.-..++.+...+. ...|.|++|||+|.+..
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------- 155 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------- 155 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------
Confidence 1111100 000000 0001223444443332 24567999999998742
Q ss_pred hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHH
Q 011400 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD 400 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~ 400 (487)
...+.|+..++. .....++|.+|+.++.+.+.+++|+.. +.+++|+.++-.+++...... ..+..+.
T Consensus 156 ------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 156 ------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccceE-EECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 334568888873 223355667888888899999999954 899999999999998876422 1111124
Q ss_pred HHHHHhcCCcHHHHH
Q 011400 401 LLVERTEGYSGSDIR 415 (487)
Q Consensus 401 ~la~~t~G~sg~dI~ 415 (487)
.++..+.|-.+..+.
T Consensus 223 ~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 223 ALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHcCCCHHHHHH
Confidence 566666665554433
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.28 E-value=1.7e-10 Score=121.96 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=94.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccc-chhhccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASS-VVSKWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~-l~~~~~g~ 283 (487)
..++|.+++++.+...+. ...+|||+||||||||++|++++..++. +|..+.+.- ......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 468999999998887762 3468999999999999999999998753 444443321 11222221
Q ss_pred c-HHHH--HHHHHHHHhc---CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------CCCCcEEEEE
Q 011400 284 S-EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 350 (487)
Q Consensus 284 s-e~~l--~~~f~~a~~~---~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~~~~~VlVIa 350 (487)
. -... ..-|...... ...+||+|||..+. ..+.+.|+..|+.-. ..-...++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras-------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC-------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 1112111110 22499999997654 345566777774221 1112244555
Q ss_pred EeCCCCc---ccHHHHhhccccccCCCCC-HHHHHHHHHHh
Q 011400 351 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 387 (487)
Q Consensus 351 tTn~p~~---Ld~aL~rRf~~~i~~~~Pd-~eeR~~IL~~~ 387 (487)
+||...+ ..+++.+||...+.+++|+ .++..+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6674322 3459999998889999996 56667788764
No 154
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.26 E-value=5.6e-11 Score=120.33 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=94.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCcHH----------HHHHHHHHHHhcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEK----------LIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~se~----------~l~~~f~~a~~~~p~IL~IDE 307 (487)
.++|||.||||||||++++.+|..++.+++.+++...... ..|...- .....+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4679999999999999999999999999999988665543 3443211 11122333333 347899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHH-----hcCC---cCCCCcEEEEEEeCCCC------------cccHHHHhhcc
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQ-----MDGL---TQSDELVFVLAATNLPW------------ELDAAMLRRLE 367 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~-----ld~~---~~~~~~VlVIatTn~p~------------~Ld~aL~rRf~ 367 (487)
+|...++. ...++.+|+. +.+. -.......||+|.|... .++.++++||.
T Consensus 143 in~a~p~~----------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGRPDV----------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccCHHH----------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 99874431 1222223331 1110 01223477889999754 37999999998
Q ss_pred ccccCCCCCHHHHHHHHHHhCC
Q 011400 368 KRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
..+.++.|+.++..+|+.....
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhcc
Confidence 8789999999999999987654
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.23 E-value=3e-10 Score=130.02 Aligned_cols=206 Identities=22% Similarity=0.284 Sum_probs=135.1
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
..|+|++.+++.+.+.+...... ......|...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 56999999999999988543210 00111345679999999999999999999987 568999988775432
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------CC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------~~ 343 (487)
|+|..+ ...+....+....+||+||||+.+.+ .+.+.|++.++.-. . .-
T Consensus 642 ~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 642 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCceecCCCeEEec
Confidence 122111 12233444555667999999997743 34556777775321 1 12
Q ss_pred CcEEEEEEeCCCCc-------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCC-------C
Q 011400 344 ELVFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------Q 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~-------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~-------~ 391 (487)
.+.+||+|||.... +.+.|+.|++.++.|.+++.++..+|+...+.. .
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 34678889987321 335677799999999999999999998877642 1
Q ss_pred CCCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 392 TGEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 392 ~~~~~~~---l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
......+ ++.|++.. ..+..+.|+.+++......+.+.+
T Consensus 787 ~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 787 KITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred CCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111222 34455542 245667888888877777766543
No 156
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.8e-11 Score=131.18 Aligned_cols=204 Identities=24% Similarity=0.270 Sum_probs=138.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~---- 279 (487)
..|+|++++...+...+..... -+....+|..++||.||+|+|||-||+++|..+. ..++.+++++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 5689999999999988844221 1112234556789999999999999999999995 78999999988644
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--CC------C
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS------D 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~~------~ 343 (487)
|+|.-+ -..+.+..+.+.++||++|||++-. ..+.+-|++.||.-. .. -
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAH-------------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAH-------------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcC-------------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 444433 2235566677788999999998764 447788999998431 11 1
Q ss_pred CcEEEEEEeCCCCc----------------------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC----
Q 011400 344 ELVFVLAATNLPWE----------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 391 (487)
Q Consensus 344 ~~VlVIatTn~p~~----------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~---- 391 (487)
.+.+||+|||--.. ..|+++.|++.+|.|.+.+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34778899974310 3567777999999999999999999988776332
Q ss_pred ---CCCCCC---CHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHH
Q 011400 392 ---TGEESL---PYDLLVERTE--GYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 392 ---~~~~~~---~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr 428 (487)
...... ..+.++.... .|-++-|+.++++-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 221111 1344555432 344455655555554444443
No 157
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.23 E-value=5.5e-12 Score=119.61 Aligned_cols=46 Identities=46% Similarity=0.650 Sum_probs=37.9
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.|+||+|++.+|+.|.-+... .+++||+||||||||++|+.+..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 389999999999999987743 4689999999999999999999865
No 158
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.22 E-value=7.5e-11 Score=120.92 Aligned_cols=155 Identities=26% Similarity=0.342 Sum_probs=101.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~s 284 (487)
..++|.++++..+...+. ...++||.||||||||++|+++|..++.+|+.+.|...... ..|..
T Consensus 24 ~~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 24 KVVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred CeeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 347887877777766553 34689999999999999999999999999999998654322 22221
Q ss_pred HHHHH----HHHHHHHh--cCC--cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----cC-----CCCcEE
Q 011400 285 EKLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ-----SDELVF 347 (487)
Q Consensus 285 e~~l~----~~f~~a~~--~~p--~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~-----~~~~Vl 347 (487)
.-... ..+..... ... +|+++|||+...+ .+.+.|+..|+.. .. -....+
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p-------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~ 156 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP-------------EVQNALLEALEERQVTVPGLTTIRLPPPFI 156 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccCCH-------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCE
Confidence 11110 00000000 011 3999999987643 3555677777641 11 124467
Q ss_pred EEEEeCC-----CCcccHHHHhhccccccCCCC-CHHHHHHHHHHhC
Q 011400 348 VLAATNL-----PWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 388 (487)
Q Consensus 348 VIatTn~-----p~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~l 388 (487)
|++|.|. ...+++++++||...++++.| +.++...++....
T Consensus 157 viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 7778783 345899999999888999999 5555555555544
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.22 E-value=3.1e-10 Score=129.62 Aligned_cols=204 Identities=22% Similarity=0.282 Sum_probs=128.0
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
.+.|+|++.+++.+...+......- ...-.|...+||+||||||||++|++||+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 3568999999999998885432100 0001233468999999999999999999987 457899988776432
Q ss_pred ---------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--cC------C
Q 011400 280 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------S 342 (487)
Q Consensus 280 ---------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--~~------~ 342 (487)
|+|..+. ..+....+....+||+|||++.+.+ .+.+.|+..++.- .. .
T Consensus 644 ~~LiG~~pgy~g~~~~--g~l~~~v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 644 SRLVGAPPGYVGYEEG--GYLTEAVRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred HHHhCCCCcccccchh--HHHHHHHHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCceecCCceEEe
Confidence 1121111 1122333444558999999987643 2445566766532 11 1
Q ss_pred CCcEEEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC------
Q 011400 343 DELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ------ 391 (487)
Q Consensus 343 ~~~VlVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~------ 391 (487)
-.+.+||+|||... .+.++++.|++.++.|.+++.++...|++..+...
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 13456788988631 14568888999989999999999999888777442
Q ss_pred -CCCCCCC---HHHHHHHhcCCc----HHHHHHHHHHHHhHHHHHH
Q 011400 392 -TGEESLP---YDLLVERTEGYS----GSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 392 -~~~~~~~---l~~la~~t~G~s----g~dI~~L~~~A~~~a~rr~ 429 (487)
......+ ++.|+. .||+ .+.|+.+++.-....+.+.
T Consensus 789 ~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 789 RGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred CCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 1211222 233333 2443 4667776666666655543
No 160
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.22 E-value=2.4e-10 Score=115.90 Aligned_cols=150 Identities=21% Similarity=0.260 Sum_probs=104.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---------------------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 265 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--------------------- 265 (487)
++++|.+.+...+........ ..++.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888888887775321 2334699999999999999999999986
Q ss_pred ---CcEEEEecccchhhccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 266 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 266 ---~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
-.++.++.++..... .....++.+....... ...|++|||+|.+..+ ..+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-
Confidence 467777776654321 1234455544433322 3469999999999653 3445667776
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHH
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~ 385 (487)
.......+|.+||.++.+-+.+++|+.. +.|.+|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence 3344466788999999999999999955 7887776665555544
No 161
>PRK09087 hypothetical protein; Validated
Probab=99.22 E-value=2.1e-10 Score=111.55 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=103.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
..++|+||+|+|||+|++++++..+..+ ++...+... ++..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC------
Confidence 4599999999999999999998876543 333322211 1111111 58999999976211
Q ss_pred hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC
Q 011400 321 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 395 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~ 395 (487)
+ ..|...++.....+ ..+|++++..|.. ..+.+++|+. ..+.+..|+.++|.++++..+.......
T Consensus 103 ~--------~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 E--------TGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred H--------HHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1 11344443333333 3455555555532 3678999994 6688999999999999999987654432
Q ss_pred -CCCHHHHHHHhcCCcHHHHHHHH---HHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 396 -SLPYDLLVERTEGYSGSDIRLVS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 396 -~~~l~~la~~t~G~sg~dI~~L~---~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
+..++.|++...+ +++.+. ......+.. ..++||...++++|+.+
T Consensus 174 ~~ev~~~La~~~~r----~~~~l~~~l~~L~~~~~~-------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER----SLFAAQTIVDRLDRLALE-------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHH-------------------hCCCCCHHHHHHHHHhh
Confidence 2335667776663 333322 222111111 12458999999999865
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=1.9e-10 Score=131.14 Aligned_cols=205 Identities=21% Similarity=0.249 Sum_probs=132.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~---- 279 (487)
+.|+|++.+++.+...+...... ......|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 56899999999999888543210 01112344568999999999999999999987 467888888765321
Q ss_pred --------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCC
Q 011400 280 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 343 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 343 (487)
|+|..+ ...+.+..+....+||+|||+|++.+ .+.+.|++.++.-. ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCcEEec
Confidence 233222 12344555666668999999998743 35566778777421 112
Q ss_pred CcEEEEEEeCCCCc-------------------------------------ccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 344 ~~VlVIatTn~p~~-------------------------------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
.+.++|+|||.... +.|.++.|++.++.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45778889875311 23467779999899999999999999887
Q ss_pred hCCCC-------CCCCCC---CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 387 LLPSQ-------TGEESL---PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 387 ~l~~~-------~~~~~~---~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
.+... ...... ..+.+++. ...|-.+.|+.+++.-...++.+.
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 76432 111111 13445554 223445667777666666655543
No 163
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.21 E-value=2.3e-10 Score=117.28 Aligned_cols=195 Identities=21% Similarity=0.193 Sum_probs=121.3
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 281 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~---- 281 (487)
++|.....+++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 3566666666666553322 234679999999999999999998866 47999999987642211
Q ss_pred -CCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCc
Q 011400 282 -GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 345 (487)
Q Consensus 282 -g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 345 (487)
|... .....+|..+ ..++||||||+.|... ++..|+..++.-. .....
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 1000 0001123333 3479999999988543 3334555554321 11234
Q ss_pred EEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----h-cCCcHHH
Q 011400 346 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----T-EGYSGSD 413 (487)
Q Consensus 346 VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t-~G~sg~d 413 (487)
+.+|++|+.. ..+.+.|..|+.. +.+..|...+|.+-+..++... +..++.. . .+++...
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQEDIMLLAEHF-------AIRMARELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCcCHHH
Confidence 6788888754 2355677778854 6677777777765443332111 1112221 2 4688889
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchh
Q 011400 414 IRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 414 I~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+..|.+..|.++++++.+.++...
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 999999999999998887776543
No 164
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-10 Score=122.47 Aligned_cols=201 Identities=21% Similarity=0.238 Sum_probs=136.2
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK- 279 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~- 279 (487)
....+++|.....+++.+.+... ......|||+|++||||..+|++|.+.. +.||+.+||..+...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45789999999999999887443 2345679999999999999999999987 469999999876432
Q ss_pred ----ccCC----cHHH---HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------c
Q 011400 280 ----WRGD----SEKL---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T 340 (487)
Q Consensus 280 ----~~g~----se~~---l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~ 340 (487)
..|. .... ....|+.|.. ++||||||..+.. .++..|+..++.- .
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCCc
Confidence 1111 1111 1123444433 7999999987753 2444466666522 2
Q ss_pred CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HhcCC
Q 011400 341 QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGY 409 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~----~t~G~ 409 (487)
.-.-.|-||++||..- .+-+.|.-|+ .++.+..|...+|.+-+-.++... +...++ ...++
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hf-------l~~~~~~~~~~~~~~ 343 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHF-------LKRFAAELGRPPKGF 343 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHH-------HHHHHHHcCCCCCCC
Confidence 2223588999998752 1344555577 448888998888886443332111 122222 24578
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 410 SGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++..+..|.+..|.+++|++.+.+++..-
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999988876543
No 165
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=3.3e-10 Score=115.27 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=120.9
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 267 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------- 267 (487)
.|++|+|++.+++.|...+... +-++++||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4899999999999999988553 345689999999999999999999987221
Q ss_pred -EEEEecccch-hh--------ccC--------CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 268 -FFNISASSVV-SK--------WRG--------DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 268 -~i~v~~~~l~-~~--------~~g--------~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
++.+...... ++ ..| -.-..++.+.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222111000 00 000 011234555444432 2346999999998843
Q ss_pred HHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 011400 326 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 405 (487)
Q Consensus 326 ~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~ 405 (487)
...+.|+..++... . .++|..|+.++.+-+.+++|+.. +.|+.++.++..++|+....... .+.+...++..
T Consensus 139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhceE-EecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 23456888887432 3 34566777889999999999955 99999999999999887643211 11124677777
Q ss_pred hcCCcHHHHHHH
Q 011400 406 TEGYSGSDIRLV 417 (487)
Q Consensus 406 t~G~sg~dI~~L 417 (487)
+.|-.+..+..+
T Consensus 211 a~Gs~~~al~~l 222 (314)
T PRK07399 211 AQGSPGAAIANI 222 (314)
T ss_pred cCCCHHHHHHHH
Confidence 777666555533
No 166
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.18 E-value=5.7e-11 Score=106.04 Aligned_cols=111 Identities=28% Similarity=0.341 Sum_probs=69.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh--ccCCcH------HHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE------KLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~--~~g~se------~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+|||+||||||||++|+.+|+.++.+++.+++...... ..|... ......+..+. ..+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999887654321 111100 00000000000 145899999998764
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcC----------CCC------cEEEEEEeCCCC----cccHHHHhhc
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 366 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~----------~~~------~VlVIatTn~p~----~Ld~aL~rRf 366 (487)
..++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 ------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2344456666653210 111 278999999988 7999999998
No 167
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=2.5e-10 Score=107.43 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccchhhccCCcHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~i~v~~~~l~~~~~g~se~~l~~~f~~ 294 (487)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 45679999999999999999999987432 22221110 0 0123455555555
Q ss_pred HHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011400 295 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 370 (487)
Q Consensus 295 a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i 370 (487)
+.. ....|++|||+|.+... ..+.|+..++.. +....+|.+|+.+..+.+++++|+. .+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~~-~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRCQ-VL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhcE-Ee
Confidence 543 23469999999988532 234577888742 2234566667777899999999995 69
Q ss_pred cCCCCCHHHHHHHHHHh
Q 011400 371 LVPLPDTEARRAMFESL 387 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~ 387 (487)
.+.+|+.++...+++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999888876
No 168
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.18 E-value=2e-10 Score=125.30 Aligned_cols=216 Identities=26% Similarity=0.282 Sum_probs=134.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+..++++++|.+...+++.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345689999999998888888775432 234579999999999999999999876 5799999998773
Q ss_pred hhc-----cCCcHHH-------HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C--
Q 011400 278 SKW-----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 341 (487)
Q Consensus 278 ~~~-----~g~se~~-------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~-- 341 (487)
... .|..... ....+.. ...++||||||+.|... +...|+..++.-. .
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 321 1110000 0001222 23479999999998543 3344666664321 0
Q ss_pred ----CCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHh
Q 011400 342 ----SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 406 (487)
Q Consensus 342 ----~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t 406 (487)
....+.+|++|+.. ..+.+.|..|+.. +.+.+|...+|.+ |+.+++...... ....
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~- 394 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINV-VPIFLPPLRERREDIPLLAEAFLEKFNRE-------NGRP- 394 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcC-CeeeCCCcccccccHHHHHHHHHHHHHHH-------cCCC-
Confidence 11236678887654 2355667777743 5566666655543 444444321100 0011
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 011400 407 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 457 (487)
Q Consensus 407 ~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~ 457 (487)
.+++...+..|.+..|.++++++.+.++........ ..|+.+|+.
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~------~~I~~~~l~ 439 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRS------GTITRSDFS 439 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCc
Confidence 368888899999999999999988877765432211 236666653
No 169
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=3.4e-10 Score=118.80 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=89.2
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------EEEEec----c
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~-------~i~v~~----~ 274 (487)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+... .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677888888887776663 24689999999999999999999988431 222322 1
Q ss_pred cchhhc----cCCc--HHHHHHHHHHHHh--cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------
Q 011400 275 SVVSKW----RGDS--EKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 338 (487)
Q Consensus 275 ~l~~~~----~g~s--e~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~-------- 338 (487)
++...+ .|-. ...+..+...|.. ..|.+|+|||++..... ++..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH------------Hhhhhhhhhccccccccccc
Confidence 222122 1110 1123344455554 35789999999875432 222223333331
Q ss_pred -----------CcCCCCcEEEEEEeCCCC----cccHHHHhhccccccCCC
Q 011400 339 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 339 -----------~~~~~~~VlVIatTn~p~----~Ld~aL~rRf~~~i~~~~ 374 (487)
.-..+.++.||+|+|..+ .+|.|++|||.. +.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 012235689999999987 699999999955 66654
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.17 E-value=1.1e-10 Score=101.49 Aligned_cols=128 Identities=30% Similarity=0.413 Sum_probs=81.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhh--------------ccCCcHHHHHHHHHHHHhcCCcE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~--------------~~g~se~~l~~~f~~a~~~~p~I 302 (487)
+.+++|+||||||||++++.+|..+... ++.+++...... .........+.++..++...|.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999765 888887654322 12334556777888888877899
Q ss_pred EEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-CCcccHHHHhhccccccCCCC
Q 011400 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 303 L~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-p~~Ld~aL~rRf~~~i~~~~P 375 (487)
|+|||++.+.......... .......... ........+|+++|. ....+..+.+|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLL----LLEELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHH----hhhhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999999886542211000 0000000001 112233567778886 344555666677777766544
No 171
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.16 E-value=5.2e-10 Score=114.60 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=125.5
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
+++++|.+...+.+.+.+.... .....|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999988888888775543 234579999999999999999998766 478999999886321
Q ss_pred --ccCCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CC
Q 011400 280 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 342 (487)
Q Consensus 280 --~~g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~ 342 (487)
+.|... ......+..+ ..++|||||+|.|... +...|+..++.-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111110 0001122222 3479999999998643 3334555554321 11
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH-----hcCCc
Q 011400 343 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER-----TEGYS 410 (487)
Q Consensus 343 ~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~-----t~G~s 410 (487)
...+.||++|+.. ..+.+.|..||.. +.+.+|...+|.+-+..++... +..++.. ..+++
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~f-------l~~~~~~~~~~~~~~~s 210 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHF-------AIQMCRELGLPLFPGFT 210 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHH-------HHHHHHHhCCCCCCCCC
Confidence 1246778777664 2356778888844 5677777777765333322110 1111221 14688
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
...+..|.+..|.++++++.+.++..
T Consensus 211 ~~al~~L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 211 ERARETLLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 88888899999999988887766654
No 172
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.16 E-value=6.7e-11 Score=127.97 Aligned_cols=204 Identities=24% Similarity=0.267 Sum_probs=123.8
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH-----------hCCcEEEEe
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 272 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e-----------l~~~~i~v~ 272 (487)
..|++++|.....+++.+.+...- ....+|||+|++||||+++|++|.+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468999999998888888774432 23467999999999999999999987 357999999
Q ss_pred cccchhhc-----cCCcH--------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 273 ASSVVSKW-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 273 ~~~l~~~~-----~g~se--------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
|..+.... .|..+ ..-..+|+.+. .++||||||+.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 98764321 11110 01112344333 379999999988543 334466666532
Q ss_pred c--------CCCCcEEEEEEeCCCC-c------ccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHH
Q 011400 340 T--------QSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYD 400 (487)
Q Consensus 340 ~--------~~~~~VlVIatTn~p~-~------Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~ 400 (487)
. ...-.+.+|++|+..- . +.+.+..|+.. +.+.+|...+|.+ ++++++..........
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 1 1122357888887652 1 23345556633 6777887777764 3344443211100111
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 401 LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 401 ~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+.....++....+..|.+..|.+++|++.+.+++..
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~ 462 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLA 462 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 111122223344567778888888888877766543
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=9.6e-10 Score=112.76 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=103.8
Q ss_pred CCCcccC-cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------------
Q 011400 205 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 267 (487)
Q Consensus 205 ~~~di~G-~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------------- 267 (487)
.|++|+| ++.+++.|...+... ..++.+||+||+|+||+++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 3888888 999999999887432 356778999999999999999999987321
Q ss_pred --------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 268 --------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 268 --------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
+..+... +. .-.-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 2222111 00 0122344554444331 2335999999988843 244568888
Q ss_pred hcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 336 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 336 ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
++. .+..+++|.+|+.+..+.+++++|+.. +++..|+.++...+++.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhcee-eeCCCCCHHHHHHHHHH
Confidence 883 334455666888888999999999955 89999998888777764
No 174
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.14 E-value=6.2e-10 Score=120.68 Aligned_cols=198 Identities=21% Similarity=0.206 Sum_probs=126.5
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 280 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~- 280 (487)
...+++|.....+.+.+.+...- .....|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999988888775532 345679999999999999999999976 5799999998874321
Q ss_pred ----cCCcHH-------HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 281 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 281 ----~g~se~-------~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
.|.... .....|..+ ..++|||||||.|... +...|+..++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 111000 001123332 2479999999998643 2334555554321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HhcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~----~t~G~s 410 (487)
....+.||++|+..- .+.+.|..|+.. +.+.+|...+|.+-+..+.... +..++. ...+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~f-------l~~~~~~~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYF-------LEQNRARLGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHH-------HHHHHHHcCCCCCCCC
Confidence 112467888887652 255666667744 6677888777765333222100 111121 223577
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
...+..|.+.-|.++++++.+.++..
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~ra 416 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISRA 416 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 88888888888888888877766654
No 175
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=7.2e-09 Score=102.57 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=113.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC-cEEE---Eec----cc----chhh----ccCCcH-H---HHHHHH-HHHHhcC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT-TFFN---ISA----SS----VVSK----WRGDSE-K---LIKVLF-ELARHHA 299 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~-~~i~---v~~----~~----l~~~----~~g~se-~---~l~~~f-~~a~~~~ 299 (487)
..++|+||+|+|||++++.+++++.. .+.. +++ .+ +... ..+... . .+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998752 2221 111 01 1111 111111 1 122211 2233456
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC---cc----cHHHHhhccccccC
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---EL----DAAMLRRLEKRILV 372 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~---~L----d~aL~rRf~~~i~~ 372 (487)
+.+|+|||++.+... ....+....+........+.|+.+ ..|+ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHhheeeeeeC
Confidence 679999999987422 111121111111112222333333 3332 11 23466788888899
Q ss_pred CCCCHHHHHHHHHHhCCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQ 447 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~-----~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~ 447 (487)
+..+.++..+++...+...... .+..++.+.+.+.|... .|..+|..+...+..+-
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~------------------ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE------------------ 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC------------------
Confidence 9999999999998887543321 22346778889999865 59999999988876631
Q ss_pred CCCCCHHHHHHHHhccC
Q 011400 448 IGPIRPEDVEIALKNTR 464 (487)
Q Consensus 448 ~~~It~eD~~~AL~~~~ 464 (487)
...|+.++++.++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 13599999999998765
No 176
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.13 E-value=8.6e-10 Score=121.48 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=44.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.|..-|++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3455689999999999999987743 2489999999999999999999998654
No 177
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.12 E-value=8.1e-10 Score=119.99 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=125.7
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.....|++++|.....+++.+.+.... .....|||+|++||||+++|+++.... +.+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456789999999987777776664321 223569999999999999999998765 4689999998874
Q ss_pred hhc-----cCCcH-------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-----
Q 011400 278 SKW-----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----- 340 (487)
Q Consensus 278 ~~~-----~g~se-------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----- 340 (487)
... .|... .....+|+.+. .++||||||+.|... +...|+..++.-.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 321 11110 00112343332 379999999998643 2334555554311
Q ss_pred ---CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHH----HHHhCCCCCCCCCCCHHHHHHH-
Q 011400 341 ---QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYDLLVER- 405 (487)
Q Consensus 341 ---~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~I----L~~~l~~~~~~~~~~l~~la~~- 405 (487)
.....+.||++|+.+- .+.+.|..|+.. +.+..|...+|.+- ++.++.. ++..
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~-----------~~~~~ 399 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVAR-----------FADEQ 399 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHH-----------HHHHc
Confidence 1112466788876642 245667778754 67777777776643 2333321 1211
Q ss_pred ---hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 406 ---TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 406 ---t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
..+++...+..|.+..|.++++++.+.++...
T Consensus 400 g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred CCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 22577778888888888888888777666543
No 178
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=9.8e-10 Score=112.47 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=101.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecccchhhccCCcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~i~v~~~~l~~~~~g~se~~l~~~f~ 293 (487)
+.++.+||+||+|+|||++|+++|+.+... ++.+...+- + ..-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHH
Confidence 456789999999999999999999988431 222221100 0 0112345555555
Q ss_pred HHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011400 294 LARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 369 (487)
Q Consensus 294 ~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~ 369 (487)
.+.. ....|++||++|.+.. ...+.|+..++. .+..+++|.+|+.++.+.+.+++|+..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~~- 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQQ- 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhcee-
Confidence 4433 3346999999999853 345668888884 334567778999999999999999966
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011400 370 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 370 i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~d 413 (487)
+.|++|+.++-...+...... ..+.....++..+.|-.+..
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLRA 200 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHHH
Confidence 999999999888888765421 11222344556666655433
No 179
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.12 E-value=2.3e-10 Score=123.84 Aligned_cols=218 Identities=21% Similarity=0.234 Sum_probs=133.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 279 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~ 279 (487)
...|++++|.....+.+.+.+...- ....+|||+|++||||+++|++|.+.. +.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3668999999998888888774432 234679999999999999999999865 579999999876432
Q ss_pred c-----cCCcH--------HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 280 W-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 280 ~-----~g~se--------~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
. .|..+ .....+|+.+. .++||||||+.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 1 11100 01122344333 379999999988543 3344666654321
Q ss_pred --CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHH----HHHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAM----FESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~I----L~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
...-.+.+|++|+..- .+.+.|..|+.. +.+.+|...+|.+- +.+++...... .--
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~----------~~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAA----------LRL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHH----------cCC
Confidence 1112356788887652 133344446633 66777777777653 33444322111 011
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 408 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 408 G~sg~dI~~-------L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
++++..+.. |.+..|.+++|++.+.++...-..... ....|+.+|+...+
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~---~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAM---PAGALTPDVLRALA 467 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC---CCCccCHHHhhhhc
Confidence 356666666 889999999999888777654322110 01247777765433
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=1.7e-09 Score=116.94 Aligned_cols=206 Identities=20% Similarity=0.184 Sum_probs=129.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhcccc------Cc-----------hhhcCC-----CCCCeeEEEEcCCCChH
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK------YP-----------KYFTGL-----LSPWKGILLFGPPGTGK 253 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~------~~-----------~~~~~~-----~~~~~gvLL~GppGtGK 253 (487)
-|+..+.+..|.|+.|.+.+-+.+..++..+-- .. +.+... .++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 355566677899999999999988887733210 00 111111 13335688999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHH--------hcCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 254 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR--------HHAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 254 T~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~--------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
||||+.||++.|..+++|++++-.+ ...++..+..|- ..+|..|+|||||--.
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~------------- 400 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP------------- 400 (877)
T ss_pred hHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------
Confidence 9999999999999999999988643 233333333322 1468899999998432
Q ss_pred HHHHHHHHHHhc-------CCcCC-----------CCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHH
Q 011400 326 RRLKTELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 326 ~~i~~~Ll~~ld-------~~~~~-----------~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~ 385 (487)
...++.++..+. |-... .-...||+.+|+.. -|+|+. -|..+++|..|...-..+=|+
T Consensus 401 ~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 401 RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHH
Confidence 222333333332 11100 01134788999865 455654 678888999888877777777
Q ss_pred HhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 386 SLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 386 ~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
.++...+...+ ..+..|++.+. .||+.-++.....+.
T Consensus 479 ~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 479 EICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLAS 516 (877)
T ss_pred HHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence 77765554432 22444555444 588776665554443
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=7.5e-10 Score=115.74 Aligned_cols=147 Identities=26% Similarity=0.329 Sum_probs=112.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc-CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 316 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~-g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~ 316 (487)
.+-.++||+||||+|||.||..+|...+.||+.+-.++-+-.+. .+--..++.+|+.|....-+||++|+++.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 45578999999999999999999999999999876554332221 112246889999999988899999999999742
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHHhhccccccCCCCCH-HHHHHHHHHh
Q 011400 317 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFESL 387 (487)
Q Consensus 317 ~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~rRf~~~i~~~~Pd~-eeR~~IL~~~ 387 (487)
.......++.++..|+..+......+++.+|++||.+...|.+ .+.+-|+..+++|.-+. ++..+++...
T Consensus 614 -vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 614 -VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred -cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 2334556788889999999988788888999999987655543 46778999888887644 5666666543
No 182
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.10 E-value=4.4e-10 Score=125.09 Aligned_cols=202 Identities=18% Similarity=0.199 Sum_probs=125.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
+..+|++++|.+...+++.+.+.... .....|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 34569999999988888777664432 234569999999999999999999876 47999999987632
Q ss_pred -----hccCCc----HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--C------
Q 011400 279 -----KWRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------ 341 (487)
Q Consensus 279 -----~~~g~s----e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--~------ 341 (487)
...|.. .......|+. ...++||||||+.|... +...|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 122211 0000001222 23479999999988543 3334566654321 0
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH---hcCCcH
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER---TEGYSG 411 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~---t~G~sg 411 (487)
..-.+.||+||+... .+.+.|.-|+.. +.+.+|...+|.+-+..++... +..++.. ..+++.
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~~~~-------l~~~~~~~~~~~~~s~ 525 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALVNNK-------LRSLEKRFSTRLKIDD 525 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHHHHH-------HHHHHHHhCCCCCcCH
Confidence 011466888887642 244455556633 6777888888764333222110 1111111 125778
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 412 SDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
..+..|.+..|.+++|++.+.++...
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~ 551 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLA 551 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 88888888888888888887776543
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.09 E-value=8.9e-10 Score=123.60 Aligned_cols=199 Identities=23% Similarity=0.298 Sum_probs=125.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 279 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~ 279 (487)
...|++++|.....+.+.+.+.... ....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3568899999998888887775432 234579999999999999999999866 579999999876422
Q ss_pred -----ccCC--------cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 280 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 280 -----~~g~--------se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
..|. ..... ..++.+ ..++||||||+.+... +...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhc---CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 11111 223332 2479999999988543 3334555554321
Q ss_pred --CCCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
.....+.+|++|+..- .+...+..|+.. +.+..|...+|.+-+ +.++...... ......
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~-------~~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLVKAFTFKIARR-------MGRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHHHHHHHHHHHH-------cCCCCC
Confidence 1123467888887652 234445556633 667788888887633 3333221100 001123
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+++...+..|.+..|.++++++.+.++..
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~~a 605 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIERA 605 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 57777888888888888888777766554
No 184
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=3.3e-10 Score=105.46 Aligned_cols=115 Identities=26% Similarity=0.325 Sum_probs=76.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecccchhhccCCcHHHHHHHHHH----HHhcCCcEEEechhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFEL----ARHHAPSTIFLDEIDA 310 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~----~~i~v~~~~l~~~~~g~se~~l~~~f~~----a~~~~p~IL~IDEiD~ 310 (487)
|-..+||.||+|||||.+|+++|+.+.. +++.++++++.... ..+..+..+... .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 99999999887611 111111111111 1111225999999999
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCCc
Q 011400 311 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPWE 357 (487)
Q Consensus 311 L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~~ 357 (487)
+.+. .....+.....+.+.|+..+++-. -.-.++++|+|+|--..
T Consensus 80 a~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred cccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 9875 223334445678888999887431 11245889999987543
No 185
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=8e-10 Score=119.74 Aligned_cols=166 Identities=24% Similarity=0.261 Sum_probs=100.7
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC-CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecccchhhcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~-~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v----~~~~l~~~~~ 281 (487)
.+|.|++.+|..|.-.+...... ..... ......+|||+|+||||||++|+++++.+....+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 56899999988887666442111 00011 123445899999999999999999999875443222 2222211100
Q ss_pred CC---cHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEE
Q 011400 282 GD---SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 347 (487)
Q Consensus 282 g~---se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~Vl 347 (487)
.. .+..++ ..+.. ...++++|||+|.+... ....|+..|+.-. ..+....
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00 000000 00111 12379999999988543 2334555554211 1124577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccc-cCCCCCHHHHHHHHHHhCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~l~ 389 (487)
||+|+|... .+++++++||+..+ ..+.|+.+...+|+++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 889998652 58999999998754 4578999999999988653
No 186
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.6e-10 Score=114.36 Aligned_cols=133 Identities=26% Similarity=0.391 Sum_probs=90.8
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC---CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG---LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 282 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~---~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g 282 (487)
+-++|++.+|+.|.-++..+-++-..... .-....++||.||+|||||.||+.+|+.++.||..-++..+.. .|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 34799999999887655333211111101 1123367999999999999999999999999999999988875 6888
Q ss_pred CcH-HHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCC
Q 011400 283 DSE-KLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGL 339 (487)
Q Consensus 283 ~se-~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~ 339 (487)
+-- ..+..++..+. ...-+|++|||||+++.+..+.....+ ...-+...||..++|.
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 754 34444444331 123379999999999987643322222 2245677899999875
No 187
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.05 E-value=1.1e-09 Score=111.51 Aligned_cols=65 Identities=37% Similarity=0.452 Sum_probs=46.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccch
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV 277 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~ 277 (487)
-+.++|+.++++..--.+.+-.. . --..+++||.||||||||.||-++|+++| .||+.++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~-~------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKE-G------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHT-T--------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccccChHHHHHHHHHHHHHHhc-c------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 56899999999987765544221 1 12458999999999999999999999996 788877776653
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.05 E-value=1.1e-09 Score=117.76 Aligned_cols=145 Identities=28% Similarity=0.350 Sum_probs=90.3
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------------------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------------ 265 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------------------ 265 (487)
..|+|+.|++.+++.+.-.+ ....+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 47899999999988776544 3446899999999999999999987431
Q ss_pred ----------CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 266 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 266 ----------~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
.||...+++.......|.........+..|. .++|||||++.+.. .++..|+..
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~-------------~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR-------------SVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH-------------HHHHHHHHH
Confidence 1222222211111111111000111222222 37999999987642 344556666
Q ss_pred hcCCc----------CCCCcEEEEEEeCCC------C-----------------cccHHHHhhccccccCCCCCHH
Q 011400 336 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 336 ld~~~----------~~~~~VlVIatTn~p------~-----------------~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
|+.-. .....+.+|+++|.- . .+..++++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112357788888852 1 3788999999999999887755
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.05 E-value=5.9e-09 Score=114.69 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=89.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhhccCCcH--HHHH-H--HHH--HHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDSE--KLIK-V--LFE--LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~~~g~se--~~l~-~--~f~--~a~~~~p~IL~IDEiD~L 311 (487)
.+|||.|+||||||++|+++++.+.. +|+.+......+...|... ..+. . .|. .......++|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998754 5888875333333333320 0000 0 000 000112269999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCC---cccHHHHhhccccccCC-CCCH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVP-LPDT 377 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~---~Ld~aL~rRf~~~i~~~-~Pd~ 377 (487)
.+. +++.|+..|+.-. .....+.||+|+|..+ .+.+++++||...+.+. .|+.
T Consensus 97 ~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 DDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQ 163 (589)
T ss_pred CHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCH
Confidence 543 4455777775221 1123467888888765 69999999999877665 4688
Q ss_pred HHHHHHHHHhC
Q 011400 378 EARRAMFESLL 388 (487)
Q Consensus 378 eeR~~IL~~~l 388 (487)
++|.+|++..+
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 88999998876
No 190
>PRK04132 replication factor C small subunit; Provisional
Probab=99.05 E-value=2.6e-09 Score=120.35 Aligned_cols=151 Identities=19% Similarity=0.130 Sum_probs=109.3
Q ss_pred eeEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcC------CcEEEech
Q 011400 241 KGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA------PSTIFLDE 307 (487)
Q Consensus 241 ~gvLL~G--ppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~------p~IL~IDE 307 (487)
-+-+..| |++.||||+|+++|+++ +.+++++++++..+ -..++.+...+.... ..|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456678 99999999999999998 56899999987522 234555554433222 35999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+|.|... ..+.|+..|+. ....+.+|++||.+..+.+++++|+.. +.|+.|+.++-...++..
T Consensus 639 aD~Lt~~-------------AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 639 ADALTQD-------------AQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cccCCHH-------------HHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhceE-EeCCCCCHHHHHHHHHHH
Confidence 9998532 34558888873 234567888999999999999999944 899999998888888887
Q ss_pred CCCCCCC-CCCCHHHHHHHhcCCcHHHH
Q 011400 388 LPSQTGE-ESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 388 l~~~~~~-~~~~l~~la~~t~G~sg~dI 414 (487)
+...... .+..+..++..+.|-....|
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 7654433 23346677777777554444
No 191
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-10 Score=120.04 Aligned_cols=152 Identities=28% Similarity=0.354 Sum_probs=99.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
+...+..|||...+..++.+.+.... .....|||.|.+||||..+||+|.+.. ..||+.+||+.+-.
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 35678899999999999998886543 344679999999999999999999987 57999999977642
Q ss_pred h-----ccCCcHHH----H---HHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------C
Q 011400 279 K-----WRGDSEKL----I---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------G 338 (487)
Q Consensus 279 ~-----~~g~se~~----l---~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~ 338 (487)
. ..|..... + +.-|+.|. .+.||+|||-.|... ++..||..++ +
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHH-------------HHHHHHHHHhhcceeecCC
Confidence 2 12221111 1 11233333 379999999776432 2333444443 2
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHh---------hccccccCCCCCHHHHHH
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLR---------RLEKRILVPLPDTEARRA 382 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~r---------Rf~~~i~~~~Pd~eeR~~ 382 (487)
-..-.-.|.||++||+ +|..++++ |. .++.+.+|...||.+
T Consensus 352 ~r~ikVDVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~ 401 (550)
T COG3604 352 DRTIKVDVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPE 401 (550)
T ss_pred CceeEEEEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCc
Confidence 2222224889999998 44444443 45 336666777777653
No 192
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.00 E-value=1.6e-08 Score=100.95 Aligned_cols=200 Identities=18% Similarity=0.247 Sum_probs=114.0
Q ss_pred cccCcHH---HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 208 SIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 208 di~G~e~---~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
..+|... +.+.|.+.+..|.. ....++||+|++|.|||++++.++... ..|++.+.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 3455555 44555555555432 233579999999999999999999755 24666665422
Q ss_pred chh--------------hcc--CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 276 VVS--------------KWR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 276 l~~--------------~~~--g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
--+ .+. ....+....+....+..++-+|+|||++.++.... ...+.+++.| ..+.
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~L-K~L~-- 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNAL-KFLG-- 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHH-HHHh--
Confidence 111 111 11233344455666778889999999999875421 1223333333 3332
Q ss_pred cCCCC-cEEEEEEeCCC--CcccHHHHhhccccccCCCC-CHHHHHHHHHHhCCCCCCC--CCCC----HHHHHHHhcCC
Q 011400 340 TQSDE-LVFVLAATNLP--WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGE--ESLP----YDLLVERTEGY 409 (487)
Q Consensus 340 ~~~~~-~VlVIatTn~p--~~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~~l~~~~~~--~~~~----l~~la~~t~G~ 409 (487)
+.-. .++.++|-.-. -.-|+.+.+||.. +.+|.. ..++...++..+-...+.. ++.. ...+-..++|.
T Consensus 177 -NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~ 254 (302)
T PF05621_consen 177 -NELQIPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL 254 (302)
T ss_pred -hccCCCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc
Confidence 2222 23233322111 2357889999965 555553 2334445555543333322 1222 24466778888
Q ss_pred cHHHHHHHHHHHHhHHHHH
Q 011400 410 SGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr 428 (487)
+| ++..+++.|+..|++.
T Consensus 255 iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 255 IG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred hH-HHHHHHHHHHHHHHhc
Confidence 86 6889999999998873
No 193
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.00 E-value=8.5e-09 Score=111.32 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=148.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV 276 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~~~~l 276 (487)
+.+.+.+....+|..++...+... .....+.+.|-||||||..++.+-.++ ...|++|++-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 557778888888888776655321 123468999999999999999998866 356888888766
Q ss_pred hhh----------ccCCc------HHHHHHHHHHH-HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011400 277 VSK----------WRGDS------EKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 277 ~~~----------~~g~s------e~~l~~~f~~a-~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~ 339 (487)
.+. +.|+. -..+..-|... ....++||+|||+|.|....++ -|.+.++..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd-------------VlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD-------------VLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH-------------HHHHHhcCC
Confidence 542 11221 11122222211 1245789999999999875332 267777877
Q ss_pred cCCCCcEEEEEEeCCCCcc----cHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 340 TQSDELVFVLAATNLPWEL----DAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 340 ~~~~~~VlVIatTn~p~~L----d~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
...+.+++||+.+|..+.. ...+.+|++ .++.|.+++..+..+|+...+.....-....++-+|+.....||..=
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 7777788888888876532 223334654 44888999999999999999987633333334445555555555322
Q ss_pred --HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 415 --RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 415 --~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
..+|++|...+-.+.. .. .......|++-|+.+|+..+..+...
T Consensus 616 raldic~RA~Eia~~~~~---------~~--k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV---------KG--KLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHHHHHhhhhcc---------cc--cccccceeehHHHHHHHHHHhhhhHH
Confidence 2355555544433321 00 01122348999999999999877553
No 194
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=4.9e-09 Score=97.29 Aligned_cols=121 Identities=26% Similarity=0.353 Sum_probs=73.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-----
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 280 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----- 280 (487)
|+|.+...+++.+.+.... ..+..|||+|++||||+++|++|.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4666666666666664432 234679999999999999999999976 4789999998874321
Q ss_pred cCCc-------HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cCCCCc
Q 011400 281 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 345 (487)
Q Consensus 281 ~g~s-------e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~ 345 (487)
.|.. ......+++.|.. ++||||||+.|... ++..|+..++.- ....-.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1110 0011234555444 89999999998644 344466666521 111235
Q ss_pred EEEEEEeCCC
Q 011400 346 VFVLAATNLP 355 (487)
Q Consensus 346 VlVIatTn~p 355 (487)
+.||++|+.+
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 8888899864
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.6e-08 Score=103.23 Aligned_cols=144 Identities=13% Similarity=0.205 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 267 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------ 267 (487)
+....+.|...+... +.++++||+||+|+||+++|+++|+.+-..
T Consensus 7 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD 75 (325)
T PRK06871 7 LQPTYQQITQAFQQG-----------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD 75 (325)
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 445666666665432 346789999999999999999999987321
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
++.+...+ ++ .-.-..++.+.+.+.. ....|++||++|.|.. ...|.||..++ .++
T Consensus 76 ~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp 135 (325)
T PRK06871 76 FHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPR 135 (325)
T ss_pred EEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCC
Confidence 22221110 00 1123445555444432 2335999999999853 24566888887 344
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
..+++|.+|+.++.+.+.+++|+.. +.+++|+.++-.+.|...
T Consensus 136 ~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 PNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCeEEEEEECChHhCchHHHhhceE-EeCCCCCHHHHHHHHHHH
Confidence 5567778898999999999999955 889999988888777764
No 196
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.98 E-value=3.3e-10 Score=99.40 Aligned_cols=106 Identities=30% Similarity=0.359 Sum_probs=58.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-cchh-hccCC------c---HHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVS-KWRGD------S---EKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~-~l~~-~~~g~------s---e~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
||||+|+||+|||++|+++|+.++..|..|.+. ++.. ...|. . +-.-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988763 3321 11111 0 00000111 14999999987
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCC-----cccHHHHhhcc
Q 011400 311 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 367 (487)
Q Consensus 311 L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~-----~Ld~aL~rRf~ 367 (487)
..++ +++.|++.|.+-. .-+...+||+|-|..+ .|++++++||-
T Consensus 74 appk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 APPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 6544 4556777775321 2234578888888765 59999999983
No 197
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4e-09 Score=105.37 Aligned_cols=156 Identities=27% Similarity=0.333 Sum_probs=91.7
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~-~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~ 367 (487)
.+|+||||||+++...+.+.. +.++ -++-.||-.++|-.- +..++++|++. ..|++|=|.|..||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 459999999999987542221 2222 345557777776532 23568888775 567888889999999
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhch
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGR 436 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G----~sg~dI~~L~~~A~~~-------a~rr~~~~le~~ 436 (487)
..+++...+.++-..||..--... -..+..| -.|+| |+-..|..+..-|+.. -.||+-..++.-
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sL----ikQY~aL-lkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErl 403 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASL----IKQYKAL-LKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERL 403 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHH----HHHHHHH-HhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Confidence 999999999988887775321000 0001111 11333 5666666666655532 235555444433
Q ss_pred hcc----CCCCCCCCCCCCCHHHHHHHHhcc
Q 011400 437 QEV----APDDELPQIGPIRPEDVEIALKNT 463 (487)
Q Consensus 437 ~~~----~~~d~~~~~~~It~eD~~~AL~~~ 463 (487)
-+. +++. ..+...|+.+-+.+-|...
T Consensus 404 LediSFeA~d~-~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 404 LEDISFEAPDM-SGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHhCccCCcC-CCCeEEEcHHHHHHHHHHH
Confidence 221 2222 2233557777777777654
No 198
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.8e-08 Score=103.45 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------------------------E
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------F 268 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------------------------~ 268 (487)
....++|...+.. .+.++.+||+||+|+||+++|.++|+.+-.. +
T Consensus 8 ~~~~~~l~~~~~~-----------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 8 RPDYEQLVGSYQA-----------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred hHHHHHHHHHHHc-----------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4455566655533 1456789999999999999999999987221 2
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.+....- . ..-.-..++.+.+.+. .....|++||++|.|.. ...|.||+.++. ++.
T Consensus 77 ~~i~p~~~-~--~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp~ 137 (334)
T PRK07993 77 YTLTPEKG-K--SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLEE---PPE 137 (334)
T ss_pred EEEecccc-c--ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhcC---CCC
Confidence 22211100 0 0012334555444433 23346999999999853 345668888883 445
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
.+++|.+|+.++.+.+.++||+.. +.+++|+.++....|.... ... ......++..+.|-.+..+
T Consensus 138 ~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 138 NTWFFLACREPARLLATLRSRCRL-HYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CeEEEEEECChhhChHHHHhcccc-ccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 577888899999999999999975 8999999888887776432 111 1123345556666554443
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.96 E-value=4.5e-09 Score=96.93 Aligned_cols=133 Identities=23% Similarity=0.282 Sum_probs=86.6
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------------------c
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 267 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----------------------~ 267 (487)
|++.+++.|...+..- ..++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888899999887543 34567999999999999999999998721 1
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
++.++...... .-....++.+...+.. ....|++|||+|.|.. ...+.|+..|+. .+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LEe---pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLEE---PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHHS---TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhcC---CC
Confidence 23332221100 1123455555554432 2345999999998853 345678888883 34
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
..+.+|.+|+.++.+-+.+++|+.. +.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred CCEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 5577888999999999999999954 55543
No 200
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.94 E-value=5e-09 Score=112.44 Aligned_cols=145 Identities=27% Similarity=0.320 Sum_probs=89.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------ 273 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~------ 273 (487)
..|.++.|...+++.+.-.+ ....+++|.||||+|||++++.++..+. ...+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36888899888777654222 3457899999999999999999998652 11122111
Q ss_pred c-----cc-----hh--------hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011400 274 S-----SV-----VS--------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 335 (487)
Q Consensus 274 ~-----~l-----~~--------~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ 335 (487)
. .+ .. ..+|.....-...+..|.. ++|||||++.+. ..++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~-------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFE-------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCC-------------HHHHHHHHHH
Confidence 0 00 00 0111111111122333333 799999997763 2345556666
Q ss_pred hcCCc----------CCCCcEEEEEEeCCCC---------------------cccHHHHhhccccccCCCCCHH
Q 011400 336 MDGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 336 ld~~~----------~~~~~VlVIatTn~p~---------------------~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
|+.-. .....+.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 64221 1234578899998752 3777999999999999988654
No 201
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.93 E-value=1.4e-08 Score=104.02 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.6
Q ss_pred CC-cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 011400 206 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 273 (487)
Q Consensus 206 ~~-di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~~i~v~~ 273 (487)
|+ +++|++++++++.+.+..... +.....+.++|+||||||||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 899999999999988855432 11233467899999999999999999999965 7887765
No 202
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-09 Score=113.24 Aligned_cols=150 Identities=21% Similarity=0.276 Sum_probs=96.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~ 278 (487)
...+++++|.+..-+++.+.+... .+...+||++|++||||+.+|+.|.... +.||+.+||+.+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 345889999988888888777541 2445679999999999999999998644 56899999987753
Q ss_pred hc-------------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-------
Q 011400 279 KW-------------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------- 338 (487)
Q Consensus 279 ~~-------------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~------- 338 (487)
.. .| ....-..+|+.|.. ++||+|||..|.+. ....|+..+|.
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecC
Confidence 21 12 11122234444443 79999999988654 22335666653
Q ss_pred -CcCCCCcEEEEEEeCCC--CcccH--HHHh-hccccccCCCCCHHHHH
Q 011400 339 -LTQSDELVFVLAATNLP--WELDA--AMLR-RLEKRILVPLPDTEARR 381 (487)
Q Consensus 339 -~~~~~~~VlVIatTn~p--~~Ld~--aL~r-Rf~~~i~~~~Pd~eeR~ 381 (487)
-......|.+|++|+.. ..+-. .+.+ |+. +.+.+|+..+|.
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~ 253 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNI--LTITLPPLRERK 253 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhhhcC--ceecCCChhhch
Confidence 12233457788888753 22222 3444 443 455566666654
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=3.3e-08 Score=100.70 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---------------------EEE
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 270 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---------------------~i~ 270 (487)
++.+++.|...+... +.++.+||+||+|+||+++|.++|+.+-.. ++.
T Consensus 9 ~~~~~~~l~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDAG-----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 455677777766432 345789999999999999999999977321 122
Q ss_pred Ee-cccchh-h-ccCCcHHHHHHHHHHHHhc----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 271 IS-ASSVVS-K-WRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 271 v~-~~~l~~-~-~~g~se~~l~~~f~~a~~~----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
+. ..+-.+ + ...-.-..++.+.+.+... ...|++||++|.|.. ...|.||+.++. .+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC---CC
Confidence 21 000000 0 0001233455555444322 235999999999843 245668888873 33
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 416 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~ 416 (487)
..+++|.+|+.++.+.+.+++|+.. +.|+.|+.++-...|... ... ..+...++..+.|..+..+..
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHHHH
Confidence 4456777888899999999999955 889999998888777653 111 122335666777766655443
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=1.1e-08 Score=112.38 Aligned_cols=174 Identities=11% Similarity=0.106 Sum_probs=104.5
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec-
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA- 273 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-v~~- 273 (487)
.+...+.+.++++++|.++..+.|..++...... ..+.+.++|+||||||||++++.+|++++..+++ .+.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 4666778889999999999999999887542210 1334559999999999999999999998765543 111
Q ss_pred --ccchhhc------------cCCcHHHHHHHHHHHHh----------cCCcEEEechhhhHHhhhcccchhhHHHHHHH
Q 011400 274 --SSVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 329 (487)
Q Consensus 274 --~~l~~~~------------~g~se~~l~~~f~~a~~----------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~ 329 (487)
......| .......++.++..+.. ....||||||++.+.... ...+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----------~~~l 215 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----------TRAL 215 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----------HHHH
Confidence 1000000 01122334444444431 234699999999876421 1122
Q ss_pred HHHHH-HhcCCcCCCCcEEEEEEeCCCC----------c----ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCC
Q 011400 330 TELLI-QMDGLTQSDELVFVLAATNLPW----------E----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 330 ~~Ll~-~ld~~~~~~~~VlVIatTn~p~----------~----Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
..++. ... ......+|+++|..+. . +.+++++ |. .+|.|.+.......+.|+..+..
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~ 289 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTI 289 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHh
Confidence 22333 111 1222233444442222 1 3467876 55 35889999998877777777754
No 205
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.5e-10 Score=115.54 Aligned_cols=48 Identities=44% Similarity=0.632 Sum_probs=41.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|.||+|++.+|+.|.... ...+++|++||||||||++|+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 346899999999999999877 345789999999999999999997754
No 206
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=6.7e-08 Score=98.38 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-----------------------cE
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 268 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-----------------------~~ 268 (487)
+....++|...+... +.++.+||+||.|+||+++|+++|+.+-. .+
T Consensus 8 l~~~~~~l~~~~~~~-----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDAG-----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 456677777666432 45678999999999999999999997722 12
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+.+.... .++. -.-..++.+.+.+.. ....|++||++|.+.. ...|.|++.++. .+.
T Consensus 77 ~~i~p~~-~~~~--I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKS--ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLEE---PAP 137 (319)
T ss_pred EEEecCc-CCCc--CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhcC---CCC
Confidence 2232211 0000 122344554443322 2346999999999853 345668888873 444
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
.+++|..|+.++.+-+.+++|+.. +.++.|+.++..+.+...
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRCq~-~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRCQQ-WVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CeEEEEEECChhhChHHHHhccee-EeCCCCCHHHHHHHHHHc
Confidence 577788888899999999999965 899999998888877653
No 207
>PRK08116 hypothetical protein; Validated
Probab=98.89 E-value=7.8e-09 Score=103.03 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----CCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----GDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~----g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
...+++|+|+||||||+||.++++++ +.+++.++..++...+. +........+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34679999999999999999999987 78888988877665432 111111222333322 3469999999542
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHHHhhc---cccccCCCCCH
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRL---EKRILVPLPDT 377 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL~rRf---~~~i~~~~Pd~ 377 (487)
.. .. .....|...++....... .+|.|||.+ .. ++.++.+|+ ...+.+..||.
T Consensus 191 ~~--------t~---~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 RD--------TE---WAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CC--------CH---HHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 11 11 122334445543322222 256678766 33 466788885 23355555654
No 208
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2.7e-08 Score=102.18 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=90.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecccch---------------
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 277 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~-------------------------~i~v~~~~l~--------------- 277 (487)
+.++++||+||+|+||+++|+++|+.+... ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456789999999999999999999987432 1122111000
Q ss_pred ---hh----c-cCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCc
Q 011400 278 ---SK----W-RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 345 (487)
Q Consensus 278 ---~~----~-~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~ 345 (487)
++ . ..-.-..++.+...+.. ....|++||++|.|.. ...|.||..++ ..+..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc---CCCcC
Confidence 00 0 00122345555444332 2235999999999853 24566888888 34455
Q ss_pred EEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 346 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 346 VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+++|.+|++++.|.+.+++|+. .+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHHc
Confidence 7788899999999999999995 5999999999998888764
No 209
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.87 E-value=2e-08 Score=99.94 Aligned_cols=165 Identities=19% Similarity=0.157 Sum_probs=109.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc------EE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------FF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~------~i 269 (487)
.+.+.+++-.++|+++.+++...+.++...+. . .++|+|||||||||+...+.|..+-.+ +.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~-----------l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSGMPG-----------L-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhccCCC-----------C-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 45566777789999999999999998854431 1 289999999999999999999988553 12
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHh-------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~-------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
.+++++-.+ .+ ..+.-...|..++. ..+..+++||+|.+..+.+ ++|-..++...
T Consensus 98 elnaSd~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-------------nALRRviek~t-- 159 (360)
T KOG0990|consen 98 ELNASDDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-------------NALRRVIEKYT-- 159 (360)
T ss_pred HhhccCccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-------------HHHHHHHHHhc--
Confidence 223332211 11 12222334555543 2567999999999975532 22333333222
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 343 ~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
..+.+...+|.|..+.+++++||.+ +.+.+-+...-...+.+++....
T Consensus 160 -~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 160 -ANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred -cceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcch
Confidence 2344557799999999999999977 66665566666666677765443
No 210
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2e-07 Score=96.95 Aligned_cols=236 Identities=18% Similarity=0.217 Sum_probs=148.8
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccchhh-
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSVVSK- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~~~l~~~- 279 (487)
-..+.|.+..++.+++++..++.. ..+.++.+.|-||||||.+...+..... ...++++|.++...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 356899999999999999887653 3456799999999999999997766552 24578888764321
Q ss_pred ---------c----c-CCcHHHHHHHHHH-HHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC
Q 011400 280 ---------W----R-GDSEKLIKVLFEL-ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 343 (487)
Q Consensus 280 ---------~----~-g~se~~l~~~f~~-a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~ 343 (487)
+ . +.+.......|.. .... .+-++++||+|.|....+. + |+..++.-.-..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------v---Ly~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------V---LYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------e---eeeehhcccCCc
Confidence 1 1 1122222333332 2222 3679999999999854322 1 223333233445
Q ss_pred CcEEEEEEeCCCCcccHHHHh---hc---cccccCCCCCHHHHHHHHHHhCCCCCCCCCC--CHHHHHHHhcCCcHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESL--PYDLLVERTEGYSGSDIR 415 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~r---Rf---~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~--~l~~la~~t~G~sg~dI~ 415 (487)
.++++|+.+|..+.-|..|-+ |. ...+.|++|+.++..+|+...+......... .++-.|++..|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 567888999988776655544 22 4568899999999999999999876655433 36668888898887 666
Q ss_pred HHHHHHHhHHHHHHHHHhhchhcc------CCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 416 LVSKEAAMQPLRRLMVLLEGRQEV------APDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 416 ~L~~~A~~~a~rr~~~~le~~~~~------~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
.+..- .|++++..|..... .+.+.......|-.+++..++.++--+.+
T Consensus 367 kaLdv-----~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDV-----CRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHH-----HHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 53321 22233322221111 11111111245678899998888865544
No 211
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.87 E-value=1.7e-08 Score=104.15 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=104.7
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----------
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA---------- 273 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~---------- 273 (487)
..|.-++|++..|..|.-..+.| .-.|+||.|+.|||||+++|+|+.-+.---+...|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 44889999999999887665443 23689999999999999999999977211111111
Q ss_pred ---cc-------------------chhhccCCcHHHH------HHHHH----------HHHhcCCcEEEechhhhHHhhh
Q 011400 274 ---SS-------------------VVSKWRGDSEKLI------KVLFE----------LARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 274 ---~~-------------------l~~~~~g~se~~l------~~~f~----------~a~~~~p~IL~IDEiD~L~~~r 315 (487)
.. +...-.|.++..+ ....+ .++.+. +||+|||+..|.
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL~--- 157 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLLD--- 157 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEecccccc---
Confidence 00 1111112333311 11111 122233 699999998774
Q ss_pred cccchhhHHHHHHHHHHHHHhcC---------Cc-CCCCcEEEEEEeCCC-CcccHHHHhhccccccCCCC-CHHHHHHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAM 383 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~---------~~-~~~~~VlVIatTn~p-~~Ld~aL~rRf~~~i~~~~P-d~eeR~~I 383 (487)
..+++.||+.+.. ++ ..+..+++|+|+|.- ..|-+.|++||...+.+..| +.++|.+|
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 2345556655542 21 123457788888876 46999999999999998776 88999999
Q ss_pred HHHhCCC
Q 011400 384 FESLLPS 390 (487)
Q Consensus 384 L~~~l~~ 390 (487)
+++.+.-
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9987754
No 212
>PRK12377 putative replication protein; Provisional
Probab=98.87 E-value=8.6e-09 Score=101.41 Aligned_cols=141 Identities=20% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCCCCCccc----CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 201 SPDVKWESIK----GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 201 ~~~~~~~di~----G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
....+|+... |...+...+..++.... ....+++|+||||||||+||.+||+++ +..++.++.
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 3445677764 33334444444433221 123689999999999999999999988 677888888
Q ss_pred ccchhhccCCcH--HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 274 SSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 274 ~~l~~~~~g~se--~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
.++......... .....++... ....+|+|||+...... .....+ |...++.-..... .+|.|
T Consensus 138 ~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s--------~~~~~~---l~~ii~~R~~~~~--ptiit 202 (248)
T PRK12377 138 PDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET--------KNEQVV---LNQIIDRRTASMR--SVGML 202 (248)
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC--------HHHHHH---HHHHHHHHHhcCC--CEEEE
Confidence 777654321100 0111223322 34579999999654211 112233 4444442222222 24568
Q ss_pred eCCCC-----cccHHHHhhc
Q 011400 352 TNLPW-----ELDAAMLRRL 366 (487)
Q Consensus 352 Tn~p~-----~Ld~aL~rRf 366 (487)
||... .+..++.+|+
T Consensus 203 SNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 203 TNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred cCCCHHHHHHHhhHHHHHHH
Confidence 98762 2555666766
No 213
>PRK15115 response regulator GlrR; Provisional
Probab=98.87 E-value=1.2e-07 Score=100.77 Aligned_cols=210 Identities=22% Similarity=0.250 Sum_probs=124.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
.++|.....+.+.+.+.... .....++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH---
Confidence 46666555555444432211 233569999999999999999999876 57999999987633211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 285 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 285 e~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
-..+|.. ......++|||||+|.|... ....|+..++.-. .
T Consensus 202 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~ 265 (444)
T PRK15115 202 ---ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRD 265 (444)
T ss_pred ---HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCce
Confidence 1112211 11123479999999998644 2333555554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
....+.+|++|+.+- .+.+.+..|+.. +.+..|...+|.+-+ +.++...... ......+++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~-~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~ 337 (444)
T PRK15115 266 IDIDVRIISATHRDLPKAMARGEFREDLYYRLNV-VSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFS 337 (444)
T ss_pred eeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhce-eeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcC
Confidence 112467788887541 233445555533 677788888886433 3333221000 001123688
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
...+..|.+..|.++++++.+.++....... ...|+.+|+...+
T Consensus 338 ~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~------~~~i~~~~l~~~~ 381 (444)
T PRK15115 338 TDAMKRLMTASWPGNVRQLVNVIEQCVALTS------SPVISDALVEQAL 381 (444)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHhCC------CCccChhhhhhhh
Confidence 8899999999999999998887776543221 1236666665444
No 214
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.86 E-value=1.9e-08 Score=107.93 Aligned_cols=213 Identities=21% Similarity=0.199 Sum_probs=132.7
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 281 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~ 281 (487)
.+.+++|.....+.+.+.+.... .....|+|.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 46788998877777776663321 234579999999999999999999976 4789999998873221
Q ss_pred CCcHHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 282 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 282 g~se~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
.-..+|.. ......+.|||||+|.|... ....|+..++.-.
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCC
Confidence 11111111 01123479999999988643 2334556555321
Q ss_pred --CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHhc
Q 011400 341 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t~ 407 (487)
.....+.+|+||+.. ..+.+.|..|+.. +.+..|...+|.+ ++.+++...... ......
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~ 338 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAK 338 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCC
Confidence 111235678788754 2356778888843 5666666666654 444444221110 001134
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
++++..+..|.+..|.++++++.+.++....... ...|+.+|+-..+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~------~~~i~~~~l~~~~ 385 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA------GQEVLIQDLPGEL 385 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC------CCcccHHHCcHhh
Confidence 6888899999999999999998887776543222 1236666764433
No 215
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.84 E-value=2.4e-08 Score=106.31 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=122.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 281 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~ 281 (487)
.+.+++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIA----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888877777776553321 234579999999999999999998876 46899999988732211
Q ss_pred CCcHHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011400 282 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 340 (487)
Q Consensus 282 g~se~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------ 340 (487)
-..+|.. ......++|||||++.|... +...|+..++.-.
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGG 267 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCC
Confidence 0111110 11123479999999998643 3334555554221
Q ss_pred --CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hc
Q 011400 341 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TE 407 (487)
Q Consensus 341 --~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~ 407 (487)
.....+.+|++|+.. ..+.+.|..|+.. +.+.+|...+|.+-+..+.... +..++.. ..
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~~~~-------l~~~~~~~~~~~~ 339 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLANAF-------LERFARELKRKTK 339 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHHHHH-------HHHHHHHhCCCCC
Confidence 111246677788765 2355667777743 7777888888876333222110 1112221 24
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
+++...+..|.+..|.++++++.+.++...
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 578888888888888888888877776544
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.83 E-value=9.9e-08 Score=93.29 Aligned_cols=183 Identities=15% Similarity=0.213 Sum_probs=120.4
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-C--CcEE-----
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTFF----- 269 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~--~~~i----- 269 (487)
...+.+.+++.+.+.++....|+.... . ..-.++++|||+|+||-|.+-++.+++ | .+=.
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~-~-----------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSS-T-----------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcc-c-----------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 344566678889999999998887663 1 112479999999999999999999988 2 1111
Q ss_pred ----------E---Eecc---cchhhccCCc-HHHHHHHHHHHHhcC---------CcEEEechhhhHHhhhcccchhhH
Q 011400 270 ----------N---ISAS---SVVSKWRGDS-EKLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEARSEHE 323 (487)
Q Consensus 270 ----------~---v~~~---~l~~~~~g~s-e~~l~~~f~~a~~~~---------p~IL~IDEiD~L~~~r~~~~~~~~ 323 (487)
+ ++.. ++.....|.. .-.++.+++...+.+ ..+++|.|+|.|..+.
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-------- 143 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-------- 143 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH--------
Confidence 1 1100 0011112222 234555555544332 3499999999986542
Q ss_pred HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHH
Q 011400 324 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLL 402 (487)
Q Consensus 324 ~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~l 402 (487)
+..|-..|+... ..+.+|..+|....+-+++++|+ ..+.++.|+.++-..++...+.+.+.....+ +..+
T Consensus 144 -----Q~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 144 -----QHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred -----HHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 223445555332 23557778999999999999999 4499999999999999999998777664432 4556
Q ss_pred HHHhcCC
Q 011400 403 VERTEGY 409 (487)
Q Consensus 403 a~~t~G~ 409 (487)
|+.+.|-
T Consensus 215 a~kS~~n 221 (351)
T KOG2035|consen 215 AEKSNRN 221 (351)
T ss_pred HHHhccc
Confidence 6655553
No 217
>PRK08181 transposase; Validated
Probab=98.83 E-value=1.1e-08 Score=101.96 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
...+++|+||||||||+||.++++++ |..+++++..++....... ........+... ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 34689999999999999999999866 7788888888776654211 111122233332 34579999999876432
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc----------ccHHHHhhcc---ccccCCCCCHHHHH
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARR 381 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~----------Ld~aL~rRf~---~~i~~~~Pd~eeR~ 381 (487)
. ..... |...++..... . -+|.|||.+.. +..++++|+- ..+.+.-++...+.
T Consensus 183 ~--------~~~~~---Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~ 248 (269)
T PRK08181 183 Q--------AETSV---LFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT 248 (269)
T ss_pred H--------HHHHH---HHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence 1 11222 33333322222 2 25668887621 3356777763 33555655654444
No 218
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.82 E-value=5.4e-08 Score=103.82 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=120.5
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 280 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~- 280 (487)
.+..++|.......+.+.+.... .....++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 35567887766666655543322 234579999999999999999998865 5789999998774321
Q ss_pred ----cCCcHH-------HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 281 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 281 ----~g~se~-------~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
.|.... .....+.. ...++|||||+|.|... +...|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 110000 00011111 22479999999998643 2344555554321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~G~s 410 (487)
....+.||++|+... .+.+.+..|+.. +.+..|...+|.+-+..+.... +..++.. ..+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~-------l~~~~~~~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHF-------LQKFSSENQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHH-------HHHHHHHcCCCCCCcC
Confidence 112367888887652 355667777744 7778888887765333221110 1222221 24677
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchh
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQ 437 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~ 437 (487)
...+..|.+.-|.++++++.+.++...
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 788888888888888887777666543
No 219
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.76 E-value=1.9e-07 Score=91.88 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=57.3
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-------------CCcccHHHHhhc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRRL 366 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-------------p~~Ld~aL~rRf 366 (487)
|+||||||++.|- -..+..|-..++ ..-.++ ||.+||+ |..+++.+++|.
T Consensus 297 PGVLFIDEVhMLD-------------iEcFTyL~kalE---S~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-------------IECFTYLHKALE---SPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred CcceEeeehhhhh-------------hHHHHHHHHHhc---CCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 8899999997762 234444555554 222334 5566664 345889999999
Q ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHH
Q 011400 367 EKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVER 405 (487)
Q Consensus 367 ~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~ 405 (487)
.+|..-+++.++-++|++..........+. .++.++..
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 557777788888899999887665554332 24444443
No 220
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-08 Score=103.27 Aligned_cols=100 Identities=27% Similarity=0.484 Sum_probs=73.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCCc-HHHHHHHHHHHH----hcCCcEEEechhhhHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~s-e~~l~~~f~~a~----~~~p~IL~IDEiD~L~~ 313 (487)
..+|||.||+|+|||+||+.+|+-++.||...+|..+.. .|+|+- +..+..++..|. ..+-+|+||||+|+|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 367999999999999999999999999999999999875 688864 445555554442 22347999999999985
Q ss_pred hhcccc-hhhHHHHHHHHHHHHHhcCC
Q 011400 314 QRGEAR-SEHEASRRLKTELLIQMDGL 339 (487)
Q Consensus 314 ~r~~~~-~~~~~~~~i~~~Ll~~ld~~ 339 (487)
....-. .-.-...-+...||..++|.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred cCccccccccccchhHHHHHHHHhccc
Confidence 432111 11112345677788888864
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.75 E-value=8.2e-08 Score=94.28 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=68.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc---HHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s---e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
.+++|+|+||||||+|+.+||+++ +..++.++..++........ ......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999988 77888888888765433211 111223343333 457999999976531
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhc
Q 011400 315 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRL 366 (487)
Q Consensus 315 r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf 366 (487)
......++..+++.- .... ..+|.|||... .++..+.+|+
T Consensus 177 -------s~~~~~~l~~Ii~~R---y~~~--~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 177 -------SRYEKVIINQIVDRR---SSSK--RPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -------CHHHHHHHHHHHHHH---HhCC--CCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 122233444444332 1111 22566888762 2455666666
No 222
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.73 E-value=3.6e-08 Score=110.86 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=97.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhc---------CCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-------CcEEE
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 270 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~---------~~~~~~~gvLL~GppGtGKT~LAraiA~el~-------~~~i~ 270 (487)
..|.|.+.+|+.|.-.+........-.. ..++...+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 5689999999988766644321110000 1134455899999999999999999998653 23333
Q ss_pred EecccchhhccCC--cHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011400 271 ISASSVVSKWRGD--SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 340 (487)
Q Consensus 271 v~~~~l~~~~~g~--se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------- 340 (487)
+.+..... +.+. .+..++ ..+.. ...++++|||+|.+... ....|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 33322211 0000 000000 00111 12379999999988533 2234556664211
Q ss_pred ---CCCCcEEEEEEeCCCC-------------cccHHHHhhccccc-cCCCCCHHHHHHHHHHhC
Q 011400 341 ---QSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLL 388 (487)
Q Consensus 341 ---~~~~~VlVIatTn~p~-------------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~l 388 (487)
.-+....|||++|..+ .+++++++||+.++ .++.|+.+.-..|.++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 1224578899998742 27899999998764 457788777666655544
No 223
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.72 E-value=5.1e-08 Score=99.81 Aligned_cols=113 Identities=22% Similarity=0.328 Sum_probs=68.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC---cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~---se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+++|+||+|||||+|+.++|+++ +..+++++..++....... ........+... ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 3789999999999999999999987 7788899888876543211 001111112222 2347999999966532
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHHHhhcc
Q 011400 314 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 367 (487)
Q Consensus 314 ~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL~rRf~ 367 (487)
. .. ....|...++........ +|.|||.+ .. +++++.+|+.
T Consensus 261 t--------~~---~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 T--------EF---SKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred C--------HH---HHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 11 122344444432222222 45577765 32 4567778773
No 224
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.72 E-value=1.5e-07 Score=100.64 Aligned_cols=218 Identities=19% Similarity=0.187 Sum_probs=128.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc-
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 281 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~- 281 (487)
+..++|.....+.+.+.+.... .....+++.|.+||||+++|+++.... +.+|+.++|..+...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4568888777777666553321 234579999999999999999998875 57899999987743211
Q ss_pred ----CCcH----HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCc
Q 011400 282 ----GDSE----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 345 (487)
Q Consensus 282 ----g~se----~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~ 345 (487)
|... ..............+++|||||++.|... +...|+..++.-. .....
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeee
Confidence 1000 00000000011223579999999988543 2334555554221 11123
Q ss_pred EEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHH----HHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011400 346 VFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSGSDI 414 (487)
Q Consensus 346 VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~----IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI 414 (487)
+.||++|+..- .+.+.|..|+.. +.+.+|...+|.+ ++.+++...... ......+++...+
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a~ 341 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKLLDPEAL 341 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCCcCHHHH
Confidence 56777876542 355677777743 5566666555543 444443221100 0011246888999
Q ss_pred HHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 415 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 415 ~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
..|.+.-|.++++++.+.++........ ..|+.+|+...+
T Consensus 342 ~~L~~~~wpgNvreL~~~~~~~~~~~~~------~~i~~~~l~~~~ 381 (463)
T TIGR01818 342 ERLKQLRWPGNVRQLENLCRWLTVMASG------DEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHhchHHH
Confidence 9999999999999888877765433221 236777765544
No 225
>PRK06526 transposase; Provisional
Probab=98.69 E-value=1.9e-08 Score=99.44 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+++|+||||||||+||.+++.++ |..++.++..++....... ....+...+.. ...+.+|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 345689999999999999999999876 6666666666655433211 00111222222 2346799999998764
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.69 E-value=6.9e-07 Score=88.26 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=62.6
Q ss_pred CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 355 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 355 p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
|..++-.+++|+ .+|...+++.++-++||+..+.......+.+ ++.|......-+-+.--.|+..|...+.+|..
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~--- 414 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG--- 414 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC---
Confidence 456899999999 5578888899999999999987765544333 44444444444444444566667777666521
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+..+|++.+.+-+-
T Consensus 415 ---------------~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 ---------------KVVEVDDIERVYRLFL 430 (454)
T ss_pred ---------------ceeehhHHHHHHHHHh
Confidence 3478889999887654
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.68 E-value=2.9e-08 Score=88.87 Aligned_cols=107 Identities=26% Similarity=0.400 Sum_probs=65.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
....|+|+|++||||+++|++|....+ .+++.++|..+. ..+++.+ .+++|||+|+|.+...
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~- 84 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE- 84 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH-
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH-
Confidence 345799999999999999999999775 356666666542 2344443 5589999999998643
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-C------cccHHHHhhccccccCCCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W------ELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~------~Ld~aL~rRf~~~i~~~~P 375 (487)
....|+..++... ...+.+|+++..+ . .+++.|..|+.. +.+..|
T Consensus 85 ------------~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 85 ------------AQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp ------------HHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCST-CEEEE-
T ss_pred ------------HHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCC-CEEeCC
Confidence 2233555554322 2223455555443 3 266777777754 344444
No 228
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.67 E-value=2e-07 Score=102.83 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.3
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34667799999999999999887743 24799999999999999999999774
No 229
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.67 E-value=2.6e-08 Score=95.29 Aligned_cols=181 Identities=21% Similarity=0.270 Sum_probs=94.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEec-ccch--------
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA-SSVV-------- 277 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~-~~l~-------- 277 (487)
+|.+...+.|.+.+.. .+...++|+||+|+|||+|++.+.+..... .+++.. ....
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5667777777776533 234679999999999999999999988321 111111 0000
Q ss_pred -------------h-hc------------cCCcHHHHHHHHHHHHhc-CCcEEEechhhhHH-hhhcccchhhHHHHHHH
Q 011400 278 -------------S-KW------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 329 (487)
Q Consensus 278 -------------~-~~------------~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~-~~r~~~~~~~~~~~~i~ 329 (487)
. .. .......+..+++..... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 0 00 011234455556555543 23799999999997 2110 12344
Q ss_pred HHHHHHhcCCcCCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCC--CCCCCHHHH
Q 011400 330 TELLIQMDGLTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLL 402 (487)
Q Consensus 330 ~~Ll~~ld~~~~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~--~~~~~l~~l 402 (487)
..|...++.........+|++++.... .-...+..|+.. +.+++-+.++..++++..+..... ..+.+++.+
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i 220 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEI 220 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 455555554333444444444444211 112234557766 899999999999999997655411 134456777
Q ss_pred HHHhcCCcH
Q 011400 403 VERTEGYSG 411 (487)
Q Consensus 403 a~~t~G~sg 411 (487)
...+.|+.+
T Consensus 221 ~~~~gG~P~ 229 (234)
T PF01637_consen 221 YSLTGGNPR 229 (234)
T ss_dssp HHHHTT-HH
T ss_pred HHHhCCCHH
Confidence 888887654
No 230
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=2e-07 Score=95.48 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=88.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---hhhc-cCCcHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 288 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~-------------------------~~i~v~~~~l---~~~~-~g~se~~l 288 (487)
+.++.+||+||+|+|||++|+.+|+.+.. .++.++...- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45678999999999999999999998732 2334433110 0000 00123456
Q ss_pred HHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh
Q 011400 289 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 364 (487)
Q Consensus 289 ~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r 364 (487)
+.+.+.+.. ....|++||+++.+... ..+.++..++... .. +.+|.+|+.+..+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--~~-~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--PQ-VVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc--CC-CEEEEEeCChHhChHHHHH
Confidence 666655543 23359999999988432 3445777777543 22 4466688888899999999
Q ss_pred hccccccCCCCCHHHHHHHHHH
Q 011400 365 RLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 365 Rf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
|+.. +.|++|+.++....|..
T Consensus 163 Rc~~-~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RCRK-MVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hhhh-hcCCCCCHHHHHHHHHh
Confidence 9954 88999999888877764
No 231
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.60 E-value=6.5e-07 Score=95.05 Aligned_cols=210 Identities=20% Similarity=0.261 Sum_probs=125.3
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
.++|.......+...+... ......++++|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~--- 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL--- 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhc----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH---
Confidence 4666666666555544321 1334679999999999999999998765 57899999987642211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------C
Q 011400 285 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 341 (487)
Q Consensus 285 e~~l~~~f~~---------------a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~ 341 (487)
-..+|.. .....+++||||||+.|... ....|+..++.-. .
T Consensus 207 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 207 ---ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred ---HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCce
Confidence 0111110 11223579999999998644 2233555554321 0
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH----hcCCc
Q 011400 342 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER----TEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~----t~G~s 410 (487)
....+.+|++|+.+. .+.+.|..|+.. +.+..|...+|.+-+..+.... +..++.. ..+++
T Consensus 271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~~~~-------l~~~~~~~~~~~~~~~ 342 (441)
T PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLAGHF-------LQRFAERNRKAVKGFT 342 (441)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHHHHH-------HHHHHHHhCCCCCCcC
Confidence 111355677776542 244555556643 6777787777765333322111 1222221 24588
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHH
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 460 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL 460 (487)
...+..|.+..|.++++++.+.++....... ...|+.+|+...+
T Consensus 343 ~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~------~~~i~~~~l~~~~ 386 (441)
T PRK10365 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLT------GEYISERELPLAI 386 (441)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC------CCccchHhCchhh
Confidence 8999999999999999998887776443221 1236666665443
No 232
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.59 E-value=3e-08 Score=92.95 Aligned_cols=71 Identities=28% Similarity=0.483 Sum_probs=47.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc-HHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
....+++|+||||||||+||.++++++ |.++..++..++........ .......+.... .+.+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 345789999999999999999999977 88888999888876543210 111222333333 347999999954
No 233
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=1.7e-07 Score=82.78 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=47.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
+.++|+||+|||||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 78888887766432111111 222222222225689999999887
No 234
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.57 E-value=7.3e-07 Score=96.45 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=55.0
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..|...+.+.+.+||+-...-.++++.++...... ..+.+-+||+||||||||++++.+|++++..+.+..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 34566777888899999988888888888643321 123346889999999999999999999998887753
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.7e-07 Score=91.30 Aligned_cols=71 Identities=27% Similarity=0.437 Sum_probs=50.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHH-HHH-HHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LIK-VLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~-~l~-~~f~~a~~~~p~IL~IDEiD~L 311 (487)
...+++|+||||||||+||-||++++ |.+++.++.++++......... ... .+.... ....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 45789999999999999999999988 7889999988887654321111 111 111112 23469999999654
No 236
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.2e-07 Score=100.96 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=93.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------ 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~------ 277 (487)
+.|+|++++...+-+++..... .+... .|.-.+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~--gl~~~--~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA--GLKDP--NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc--ccCCC--CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 4689999999999998855432 11111 467789999999999999999999988 4568999888632
Q ss_pred ---hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------CCCcE
Q 011400 278 ---SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 346 (487)
Q Consensus 278 ---~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~V 346 (487)
..|+|..+. ..+.+..+....+||+|||||.-. ..+++.|++.+|.-.- .-+++
T Consensus 638 gsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh-------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAH-------------PDVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCCcccccchhH--HHHHHHHhcCCceEEEEechhhcC-------------HHHHHHHHHHHhcCccccCCCcEeeccce
Confidence 235555443 366777788888999999998753 3456667777774321 12458
Q ss_pred EEEEEeCC
Q 011400 347 FVLAATNL 354 (487)
Q Consensus 347 lVIatTn~ 354 (487)
+||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 88899875
No 237
>PRK06921 hypothetical protein; Provisional
Probab=98.52 E-value=4.1e-07 Score=90.63 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=45.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
..+++|+||||||||+|+.+||+++ +..+++++..++........ ......+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56777887766544321111 111112222 23457999999944
No 238
>PRK09183 transposase/IS protein; Provisional
Probab=98.52 E-value=1.8e-07 Score=92.86 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+++|+||||||||+|+.+++.+. |..+..+++.++...+... ....+...+... ...+.+++|||++.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345689999999999999999998764 6777777777665433211 111233334332 2456799999997653
No 239
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.51 E-value=1.8e-07 Score=94.28 Aligned_cols=205 Identities=22% Similarity=0.240 Sum_probs=125.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
......|+.+++.....+.+.+..... ..-...+||.|.+||||-.+|++..... ..+|+.++|..+
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 345566888998887777666544211 1122359999999999999999988766 689999999877
Q ss_pred hhhc-----cCCc--HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC-------
Q 011400 277 VSKW-----RGDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS------- 342 (487)
Q Consensus 277 ~~~~-----~g~s--e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~------- 342 (487)
-... .|.. .+....+|+.|.. +.+|+|||-.+.+ ++...|+..+.+-+-+
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp-------------~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP-------------RLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH-------------HHHHHHHHHhcCCceeecCCcce
Confidence 5431 1211 1233456776665 7999999976654 3445577776532211
Q ss_pred -CCcEEEEEEeCCCC-------cccHHHHhhccccccCCCCCHHHHHHHH----HHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 343 -DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMF----ESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 343 -~~~VlVIatTn~p~-------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL----~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
.-.|.||++|..+- ..-+.+.-|.. ++.+..|...+|..-+ +.++.... +++..-...++
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s-------~elg~p~pkl~ 402 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLN-VLTLNLPPLRERPQDIMPLAELFVQQFS-------DELGVPRPKLA 402 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhh-eeeecCCccccCcccchHHHHHHHHHHH-------HHhCCCCCccC
Confidence 12488999997652 23334444763 3677777666655322 22211100 01111122355
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
..-+..|.+..|.+++|++.+.+.+...
T Consensus 403 ~~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 403 ADLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 5666777888888888888777665544
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=7.1e-07 Score=78.16 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccchhh--------------ccC--CcHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WRG--DSEKLIKVLFELA 295 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--------~~~~i~v~~~~l~~~--------------~~g--~se~~l~~~f~~a 295 (487)
.+.++++||||+|||++++.+++.+ ..+++.+++...... ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999987 677888876544310 001 2233444455555
Q ss_pred HhcCCcEEEechhhhHH
Q 011400 296 RHHAPSTIFLDEIDAII 312 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~ 312 (487)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55554599999999974
No 241
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.50 E-value=3.9e-07 Score=97.60 Aligned_cols=171 Identities=19% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----ccchhhcc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA----SSVVSKWR 281 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~----~~l~~~~~ 281 (487)
+..|.|.+.+|.-|.-.+..-.....--...++..-+|++.|.||||||-+.++.+.-+...+|.--- +.|....+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 67899999999988766543322111111114556789999999999999999999977655443211 11111111
Q ss_pred CCcHHHHHHHHHHHHh---cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC----Cc------CCCCcEEE
Q 011400 282 GDSEKLIKVLFELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----LT------QSDELVFV 348 (487)
Q Consensus 282 g~se~~l~~~f~~a~~---~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----~~------~~~~~VlV 348 (487)
...+. -...+ +|-. ...+|-.|||+|++..+.+ ..+.+.|+. +. .-+.+.-|
T Consensus 424 kD~es-gdf~i-EAGALmLADnGICCIDEFDKMd~~dq-------------vAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 424 KDEES-GDFTI-EAGALMLADNGICCIDEFDKMDVKDQ-------------VAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred ecCCC-Cceee-ecCcEEEccCceEEechhcccChHhH-------------HHHHHHHHhheehheecceEEeecchhhh
Confidence 00000 00001 1110 1237999999999854311 123444431 11 11223447
Q ss_pred EEEeCCCC-------------cccHHHHhhcccc-ccCCCCCHHHHHHHHHHhCCCC
Q 011400 349 LAATNLPW-------------ELDAAMLRRLEKR-ILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 349 IatTn~p~-------------~Ld~aL~rRf~~~-i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
+|++|+.. .+++++++||+.. |.++.|++..-..|-++.+..+
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 78888763 2788999999865 4668898888888877776543
No 242
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.47 E-value=1.1e-06 Score=96.40 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=83.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchhhccCCc--HHHHH--------HHHHHHHhcCCcEEEechh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~~~~g~s--e~~l~--------~~f~~a~~~~p~IL~IDEi 308 (487)
.||+|.|++|||||+++++++.-+. .+|..+..+.-....+|.. +..++ .++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 6899999999999999999999875 5888777655444445432 11111 1122211 269999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~P 375 (487)
..+. ..+++.|++.|+.-. ..+...++|++-|.. ..+++++++||+..+.++.|
T Consensus 103 n~~~-------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCC-------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 7764 446677888886321 112346677763322 34899999999999999988
Q ss_pred CHHH
Q 011400 376 DTEA 379 (487)
Q Consensus 376 d~ee 379 (487)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 243
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.44 E-value=1.5e-06 Score=93.97 Aligned_cols=176 Identities=23% Similarity=0.243 Sum_probs=91.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-cccchh--hcc--
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVS--KWR-- 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~-~~~l~~--~~~-- 281 (487)
..|.|+|++|+-|.-.+..-.....-.....+..-+|||+|.||||||.+.+.+++-+..-.+.-- ++.-.+ .|+
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 457899999998876554332211111111334468999999999999999999997744333211 111000 000
Q ss_pred -CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cCCCCcEEEEEEeCCCC---
Q 011400 282 -GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPW--- 356 (487)
Q Consensus 282 -g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-~~~~~~VlVIatTn~p~--- 356 (487)
+++.+.+.+- ...-....+|-+|||||++.....+...+-+..+. +--.-.|+ ..-+.+.-|+|++|...
T Consensus 509 d~dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQT----vSIAKAGII~sLNAR~SVLAaANP~~sky 583 (804)
T KOG0478|consen 509 DPDTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQT----LSIAKAGIIASLNARCSVLAAANPIRSKY 583 (804)
T ss_pred cCccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhh----hhHhhcceeeeccccceeeeeeccccccC
Confidence 0111111000 00001123699999999995332211111111100 00011122 22234455888888542
Q ss_pred ----------cccHHHHhhccccc-cCCCCCHHHHHHHHHHh
Q 011400 357 ----------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 387 (487)
Q Consensus 357 ----------~Ld~aL~rRf~~~i-~~~~Pd~eeR~~IL~~~ 387 (487)
.|++.|++||+.++ .+..||+..-+.|..++
T Consensus 584 np~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 584 NPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred CCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 28899999999865 44667776445554444
No 244
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.41 E-value=1.5e-06 Score=91.00 Aligned_cols=247 Identities=20% Similarity=0.189 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
.+|.|++++|+.|.-++....... ...+ ++..-+|+|.|.||+.||-|.+.+.+-.....|..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 468999999999987775433211 1111 45556799999999999999999998765555443211 1122323
Q ss_pred HHHHHHHH-HHHH-------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH-hcCC-cCCCCcEEEEEEeCC
Q 011400 285 EKLIKVLF-ELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ-MDGL-TQSDELVFVLAATNL 354 (487)
Q Consensus 285 e~~l~~~f-~~a~-------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~-ld~~-~~~~~~VlVIatTn~ 354 (487)
...++.-. .+.. -...+|-+|||+|++...... .-++...+ +-+.. =.|+ +.-+.+..|++++|.
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt--AIHEVMEQ---QTISIaKAGI~TtLNAR~sILaAANP 491 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRT--AIHEVMEQ---QTISIAKAGINTTLNARTSILAAANP 491 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhH--HHHHHHHh---hhhhhhhhccccchhhhHHhhhhcCc
Confidence 22222100 0000 011368999999999643211 11111111 00110 0122 122344567888886
Q ss_pred CC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCCC--CCCCCC-----CCHH------HHHHHhc
Q 011400 355 PW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPS--QTGEES-----LPYD------LLVERTE 407 (487)
Q Consensus 355 p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~~--~~~~~~-----~~l~------~la~~t~ 407 (487)
.+ .|+.||++||+..+.+ ..||.+.-..+.++..-- +..++. .+.+ .+++...
T Consensus 492 ayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~ 571 (721)
T KOG0482|consen 492 AYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKN 571 (721)
T ss_pred cccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcC
Confidence 64 2899999999976654 668877777777665421 111111 2322 2455556
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHH--------------HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMV--------------LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~--------------~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
-+.+.++...+..|-...-+.... .+.-...... +--...|..+|+.+||+-++-|
T Consensus 572 P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~Alar---LRls~~V~~~DV~EALRLme~s 641 (721)
T KOG0482|consen 572 PVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALAR---LRLSDSVEEDDVNEALRLMEMS 641 (721)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHH---hhhccccchhhHHHHHHHHHhh
Confidence 677777777776665544333221 1100000000 0001237889999999887644
No 245
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=3.6e-06 Score=76.18 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=74.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC--------c-EEEEecccchhhc------------cCCcHHHHHH-HHHHHHhcC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT--------T-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA 299 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~--------~-~i~v~~~~l~~~~------------~g~se~~l~~-~f~~a~~~~ 299 (487)
-++|+|+||+|||++++.++..+.. . ++.+.+.+....- .......... +........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4889999999999999999987711 1 2233333222110 0011111111 122233455
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcc--ccccCCCCCH
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 377 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~--~~i~~~~Pd~ 377 (487)
..+|+||.+|.+...... .........+...+...... .+-++.|++ +..... +.+++. ..+.+..-+.
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~~~~~~--~~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLPQALPP--GVKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhhhccCC--CCeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999999753221 11122222333333321112 233343443 222222 444333 3477788899
Q ss_pred HHHHHHHHHhCCC
Q 011400 378 EARRAMFESLLPS 390 (487)
Q Consensus 378 eeR~~IL~~~l~~ 390 (487)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.34 E-value=8.3e-07 Score=90.16 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=49.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
..+|++|+||+|||||+|+.++|+++ |.++..++.+++......... ..+...++... ...+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 45799999999999999999999998 777888887776554321110 11223333322 3479999999643
No 247
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.7e-05 Score=78.40 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE--EEec--------------cc
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SS 275 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i--~v~~--------------~~ 275 (487)
+..+++.|...+... +.++.+||+|| +||+++|+.+|..+-..-- .-.| ++
T Consensus 7 q~~~~~~L~~~~~~~-----------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQD-----------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHcC-----------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 345566666665432 45678999996 6899999999997622100 0000 11
Q ss_pred chhhc-cC--CcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 276 VVSKW-RG--DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 276 l~~~~-~g--~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
+.--. .| -.-..++.+...+.. ....|++||++|.+... ..|.||..++. ++..+++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE---Pp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIEE---PQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcC---CCCCeEE
Confidence 10000 01 123445555444432 22359999999998532 34668888873 3444667
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
|.+|+.++.+-+.+++|+.. +.|+. +.++..+++... +.. .+...++....| ++.....+..
T Consensus 138 iL~t~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L~~~----g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRTQI-FHFPK-NEAYLIQLLEQK----GLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHccee-eeCCC-cHHHHHHHHHHc----CCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 77888899999999999955 77765 555555555432 221 122344445555 4555555543
No 248
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=6.7e-06 Score=82.53 Aligned_cols=118 Identities=13% Similarity=0.117 Sum_probs=77.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEecccchhhccCCcHHHHHHHHHHHHh----
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELARH---- 297 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~---- 297 (487)
..++.+||+||+|+||+.+|.++|+.+-+. ++.+.... .+. .-.-..++.+.+.+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccC
Confidence 456789999999999999999999987331 11121100 000 0123344555444432
Q ss_pred cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 298 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
....|++||++|.+... ..+.|+..++. ++..+++|..|+.++.+.+.+++|+.. +.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LEE---Pp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-------------AISAFLKVLED---PPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhhc---CCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence 22359999999998533 34668888873 445567777888899999999999955 666543
No 249
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.31 E-value=2.3e-06 Score=94.33 Aligned_cols=167 Identities=24% Similarity=0.266 Sum_probs=94.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcC--CCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecc---cchhh
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SAS---SVVSK 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~--~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v-~~~---~l~~~ 279 (487)
...|.|++.+|+.|.-.+..... ..... .++..-+|||.|.||||||.|.+.+++-+...++.- .++ .|...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~--k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVK--KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCc--ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 46789999999988866543322 11111 134456899999999999999999999775544322 111 11111
Q ss_pred ccCCcHHHHHHHHHHHH---hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC----CcC------CCCcE
Q 011400 280 WRGDSEKLIKVLFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----LTQ------SDELV 346 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~---~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~V 346 (487)
.+-... ...+.-.+- ...++|.+|||+|.+.... ...+...|+. +.+ -+.+.
T Consensus 363 v~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm~~~d-------------r~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 363 VVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKMNEED-------------RVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEEccC--CCeEEEeCCEEEEecCCEEEEEeccCCChHH-------------HHHHHHHHHhcEeeecccceeeecchhh
Confidence 000000 000000110 1234799999999874321 1223444431 111 11334
Q ss_pred EEEEEeCCCC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCC
Q 011400 347 FVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLP 389 (487)
Q Consensus 347 lVIatTn~p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~ 389 (487)
-|+|++|... .+++++++||+..+.+ ..|+.+.-..+.++.+.
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 5778888774 2788999999987655 45766655555555543
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.31 E-value=1.5e-06 Score=86.92 Aligned_cols=137 Identities=22% Similarity=0.327 Sum_probs=75.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhhccCCcHHHHHHHHHHHH-----------hcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELAR-----------HHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~~~g~se~~l~~~f~~a~-----------~~~p~IL~ 304 (487)
..+++||.||+|||||++++..-+.+... ...++++... +...++.+++..- ..+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 45789999999999999999988776432 2233333221 2222332222110 11235999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhc--CCcCC-------CCcEEEEEEeCCCC---cccHHHHhhccccccC
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRILV 372 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--~~~~~-------~~~VlVIatTn~p~---~Ld~aL~rRf~~~i~~ 372 (487)
|||++.-..+.-+. ....+-|-+.++ |.-.. -..+.+|++++.+. .+++++.|.| .++.+
T Consensus 106 iDDlN~p~~d~ygt-------q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~ 177 (272)
T PF12775_consen 106 IDDLNMPQPDKYGT-------QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNI 177 (272)
T ss_dssp EETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE-
T ss_pred ecccCCCCCCCCCC-------cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEe
Confidence 99998765543221 122222222232 11111 13477788887543 4888898888 45899
Q ss_pred CCCCHHHHHHHHHHhCC
Q 011400 373 PLPDTEARRAMFESLLP 389 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~ 389 (487)
+.|+.+....|+..++.
T Consensus 178 ~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 178 PYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ---TCCHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHh
Confidence 99999988888777664
No 251
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.23 E-value=1.3e-05 Score=78.26 Aligned_cols=130 Identities=15% Similarity=0.148 Sum_probs=74.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
.+-.++||+|||||..++.+|+.+|..++.++|++.. ....+.+++.-+.... +-+++||++.|...--
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~G-aW~cfdefnrl~~~vL---- 101 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQSG-AWLCFDEFNRLSEEVL---- 101 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHH----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhcC-chhhhhhhhhhhHHHH----
Confidence 4678899999999999999999999999999998864 3456677776655544 7999999998853311
Q ss_pred hhHHHHHHHHHHHHHhcCCcC----------CCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 321 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~ld~~~~----------~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
+... +.+..+...+..-.. -....-++.|.|.. ..+++.++.-| +.+.+..||...-.+++
T Consensus 102 -S~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 102 -SVIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp -HHHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred -HHHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 1111 111222222221110 01123345566643 46888888877 55888899976655544
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=1e-05 Score=72.66 Aligned_cols=72 Identities=25% Similarity=0.418 Sum_probs=48.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----------------------cC--CcHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------RG--DSEKLIKVLFELA 295 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----------------------~g--~se~~l~~~f~~a 295 (487)
++|+||||+|||+++..++... +.+++.++........ .. ............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 4666666554332110 00 1111222334555
Q ss_pred HhcCCcEEEechhhhHHhh
Q 011400 296 RHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~~~ 314 (487)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677889999999998754
No 253
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2.6e-05 Score=76.91 Aligned_cols=121 Identities=11% Similarity=0.022 Sum_probs=77.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--------------ccchhhcc---CCcHHHHHHHHHHHHh---
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------------SSVVSKWR---GDSEKLIKVLFELARH--- 297 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~--------------~~l~~~~~---g~se~~l~~~f~~a~~--- 297 (487)
.+++.+||+||+|+||..+|.++|+.+-..--.-.| +++.--+. .-....++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467889999999999999999999977221000001 11100000 1122334444433221
Q ss_pred --cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCC
Q 011400 298 --HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 375 (487)
Q Consensus 298 --~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~P 375 (487)
....|++|+++|.+.. ...+.||..++ .++..+++|..|+.++.+.+.+++|+.. +.++.+
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 2346999999999853 34566888887 3445577788899999999999999965 566555
No 254
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=0.00013 Score=73.96 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=83.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecccchhhccCCcHHHHHHHHHHHHh-----cCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT-------------TFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAP 300 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~-------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~-----~~p 300 (487)
-++.+||+|+.|.||+.+|+.+++.+-+ .++.++.. +. .-.-..++.+.+.... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCCc
Confidence 3467899999999999999999998721 12222200 00 0122344444444422 244
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 380 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR 380 (487)
.|++||++|.+.. ...+.|+..++. .+..+++|.+|+.+..+-+.+++|+.. +.+.+|+.++.
T Consensus 92 KvvII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHH
Confidence 6999999987742 234568888874 334455666777888899999999955 89999988887
Q ss_pred HHHHHH
Q 011400 381 RAMFES 386 (487)
Q Consensus 381 ~~IL~~ 386 (487)
...+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 766665
No 255
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.15 E-value=8.5e-05 Score=88.38 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=50.0
Q ss_pred HHHHHhhhhhc---CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 189 LAESLCRDIIR---GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 189 ~~~~~~~~~~~---~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+.+..++.. ..+...+++++|.+...++|.+.+.... ...+-+-|+|++|+||||||+++++.+.
T Consensus 163 ~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~----------~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 163 MIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLES----------EEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred HHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHcccc----------CceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 34444444433 2355678999999999999998774321 2345688999999999999999998874
Q ss_pred Cc
Q 011400 266 TT 267 (487)
Q Consensus 266 ~~ 267 (487)
..
T Consensus 233 ~~ 234 (1153)
T PLN03210 233 RQ 234 (1153)
T ss_pred hc
Confidence 43
No 256
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-05 Score=88.24 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=115.4
Q ss_pred hhhcCCCCCCCCcccCc-HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------
Q 011400 196 DIIRGSPDVKWESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 264 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~-e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------- 264 (487)
++......-+++.++|. ++-.+.+.+.+... ..++-+|.|.||+|||.++.-+|+..
T Consensus 175 dl~p~a~~gkldPvigr~deeirRvi~iL~Rr------------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~ 242 (898)
T KOG1051|consen 175 DLTPRARQGKLDPVIGRHDEEIRRVIEILSRK------------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLK 242 (898)
T ss_pred ccChhhhccCCCCccCCchHHHHHHHHHHhcc------------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccc
Confidence 33333333457888887 66666666666442 22678999999999999999999976
Q ss_pred CCcEEEEecccch--hhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC
Q 011400 265 KTTFFNISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 341 (487)
Q Consensus 265 ~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~ 341 (487)
+..++.++...+. .++.|+.+..++.+.+.+. .....||||||++-+.+.....+ .-...+.|-..+ .
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~nlLkp~L----~ 313 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAANLLKPLL----A 313 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHHhhHHHH----h
Confidence 3456777766544 3678899999999999888 44567999999999987643311 111222222111 2
Q ss_pred CCCcEEEEEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 342 SDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 342 ~~~~VlVIatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.+. +.+|+||..- .+-+|++-+||+. +.++.|+.+.-..||......
T Consensus 314 rg~-l~~IGatT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 314 RGG-LWCIGATTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cCC-eEEEecccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 333 6677766532 2358899999976 788999877766666665544
No 257
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.13 E-value=8.8e-06 Score=87.16 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=94.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc---------ch
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS---------VV 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~---------l~ 277 (487)
..|.|++.+|..+.-.+..-.....-....++...+|||.|.||||||-+.|.+++-....++..--.. ..
T Consensus 449 PsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~K 528 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRK 528 (854)
T ss_pred chhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEee
Confidence 468999999999887764433222222222455568999999999999999999997766555432111 00
Q ss_pred hhccCCcHHHHHH-HHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHH---HHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 278 SKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL---KTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 278 ~~~~g~se~~l~~-~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i---~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
.... .++.+.. .+-.| ..+|.+|||+|++-......-.+.+..+.+ +..+...++ .+..||+|+|
T Consensus 529 dPvt--rEWTLEaGALVLA---DkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLq------ArctvIAAan 597 (854)
T KOG0477|consen 529 DPVT--REWTLEAGALVLA---DKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQ------ARCTVIAAAN 597 (854)
T ss_pred CCcc--ceeeeccCeEEEc---cCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHH------hhhhhheecC
Confidence 0000 0000000 00011 126999999999965422222222221111 111222222 2345788888
Q ss_pred CCC-------------cccHHHHhhccccccCCC---C--CHHHHHHHHHHhCCCCC
Q 011400 354 LPW-------------ELDAAMLRRLEKRILVPL---P--DTEARRAMFESLLPSQT 392 (487)
Q Consensus 354 ~p~-------------~Ld~aL~rRf~~~i~~~~---P--d~eeR~~IL~~~l~~~~ 392 (487)
... .+.+++++||+....+.- | |+....-++..+.+.++
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp 654 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHP 654 (854)
T ss_pred CCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCC
Confidence 631 367789999987555433 3 33333345555554443
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=2.9e-05 Score=77.33 Aligned_cols=157 Identities=19% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEecccch----------hh---c-----c-CCcHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W-----R-GDSEKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e--l~~~---~i~v~~~~l~----------~~---~-----~-g~se~~l~~~f~~ 294 (487)
..+-|.|+|++|+|||+||+.+++. .... ++.++...-. .. . . ...+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4567899999999999999999987 4332 2233322110 00 0 0 11223333333 3
Q ss_pred HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 295 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 295 a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
.-...+++|+||+++... ....+...+.. .....-||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLPS---FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------HC---HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------ccccccccccc---ccccccccccccccccc-cccccc-cccccccc
Confidence 333447999999997542 11112222211 11123355577654322 122211 35688888
Q ss_pred CCHHHHHHHHHHhCCCCCC----CCCCCHHHHHHHhcCCcHHHHHHH
Q 011400 375 PDTEARRAMFESLLPSQTG----EESLPYDLLVERTEGYSGSDIRLV 417 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~~~~~----~~~~~l~~la~~t~G~sg~dI~~L 417 (487)
.+.++-.+++......... ........+++.+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 8999999999998755441 1122246688888764 3445443
No 259
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.12 E-value=1.3e-05 Score=80.66 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=101.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecccch------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV------ 277 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~---el~~~~i~v~~~~l~------ 277 (487)
-.+.|..+..+.+.+++...... ...+.|++.||.|+|||++...... +.|-.++.+......
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45778888777887777544332 3457899999999999997765543 556677666543221
Q ss_pred ---------------hhccCCcHHHHHHHHHHHHh-----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 278 ---------------SKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 278 ---------------~~~~g~se~~l~~~f~~a~~-----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.+..|.....+..++...+. ..+.|.++||||.+++.. +++ .+.+.+|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQt--llYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQT--LLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhH--HHHHHHH
Confidence 11223334444444444332 123355568999887542 221 2455555
Q ss_pred CCcCCCCcEEEEEEeCCCCc---ccHHHHhhcccc-ccCCCC-CHHHHHHHHHHhC
Q 011400 338 GLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 388 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~---Ld~aL~rRf~~~-i~~~~P-d~eeR~~IL~~~l 388 (487)
-......++.||+.|.+.+. +...+.+||... |+++++ ...+-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 44455567888888877754 667888999766 555544 6788888888887
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.12 E-value=4e-07 Score=93.56 Aligned_cols=168 Identities=25% Similarity=0.283 Sum_probs=84.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----chhhcc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----VVSKWR 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~-----l~~~~~ 281 (487)
..|.|.+.+|..+.-.+.........-....+..-++||.|.||||||.|.+.+++-....++ +++.. +.....
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceec
Confidence 568899998887664443322211100011244568999999999999999988765544332 22211 111100
Q ss_pred ---CCcHHHHH-HHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----cC------CCCcEE
Q 011400 282 ---GDSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQ------SDELVF 347 (487)
Q Consensus 282 ---g~se~~l~-~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~----~~------~~~~Vl 347 (487)
...+..+. ..+-.| ..+|++|||+|.+-.. ....|.+.|+.- .. -+.+.-
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred cccccceeEEeCCchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 00000000 011122 2379999999998532 133466666631 11 123466
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccccC-CCCCHHHHHHHHHHhCCCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~~i~~-~~Pd~eeR~~IL~~~l~~~ 391 (487)
|++++|... .+++++++||+.++.+ ..|+.+.-..+.++.+...
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 888988764 3778899999987665 6677776666776665443
No 261
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.12 E-value=7.4e-05 Score=79.52 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=51.5
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..+..+..+.+.+++.=+..-+.++++++.... .+.. -...+-+||+||+||||||.++.+++++|..+++.+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~----~~~~-~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVA----EFTP-KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHH----Hhcc-CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345556667778888777776677777664110 0010 123356889999999999999999999999888765
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.09 E-value=1.2e-05 Score=68.82 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 263
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.05 E-value=1.2e-05 Score=83.46 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=57.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccchhh-------ccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~-~~i~v~~~~l~~~-------~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
..+++|++||||+|+|||+|.-.+.+.+.. .-..+.-..++.. +.+.. .-+..+.+..... ..+|+|||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHhc-CCEEEEeee
Confidence 357899999999999999999999998743 1122222222211 11111 1122222222222 249999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 309 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 309 D~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+--- ..+ ..++..|+..+= ...+++|+|+|.+
T Consensus 137 ~V~D------iaD----Amil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVTD------IAD----AMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred eccc------hhH----HHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 6421 122 334444444432 1346788999987
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=4.5e-05 Score=69.49 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...++++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4569999999999999999999887
No 265
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.01 E-value=2.8e-05 Score=75.25 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=58.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc----------chhhccCCcHHHHHHHHHHHH--hcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----------VVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~----------l~~~~~g~se~~l~~~f~~a~--~~~p~IL~IDE 307 (487)
+..+||||+||+|||++|+.++.. .-++..+.+. +.......+-..+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 456999999999999999999742 2222222211 000001112223333333333 24467999999
Q ss_pred hhhHHh------hhcccc--hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 308 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 308 iD~L~~------~r~~~~--~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
++.+.. .+.... .+......+...++..+..+...+..|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999866 221111 112223345555666666554555556555443
No 266
>PHA00729 NTP-binding motif containing protein
Probab=98.01 E-value=2.5e-05 Score=75.59 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+++|+|+||||||++|.+++.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 267
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.99 E-value=4.9e-05 Score=72.46 Aligned_cols=80 Identities=18% Similarity=0.322 Sum_probs=53.4
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-ccC----------------------CcHHH
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WRG----------------------DSEKL 287 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~-~~g----------------------~se~~ 287 (487)
..++++..-++++||||+|||+++..++.+. +...++++..++... ... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3446667779999999999999999988754 567888887652110 000 00112
Q ss_pred HHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 288 IKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 288 l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
+..+...+....+.+|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33344445555789999999999864
No 268
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.90 E-value=0.00011 Score=73.03 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---C--CcEEEE-----ec--cc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---K--TTFFNI-----SA--SS 275 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~--~~~i~v-----~~--~~ 275 (487)
.+.|+.-+++.+...+...+..+.- ..|--+=|+|++||||++.++.||+.+ | .+++.. +. ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p-----~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNP-----RKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCC-----CCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 4688888888888888666654431 223345589999999999999999977 2 222211 11 11
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
-...|..+ ....+...+...+-++.++||+|+|.+.
T Consensus 158 ~ie~Yk~e---L~~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKEE---LKNRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHHH---HHHHHHHHHHhcCCceEEechhhhcCHh
Confidence 11122222 2223334445555689999999998643
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.0016 Score=69.36 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
.+|..++|+|++|+||||++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 356789999999999999999999877 55666665543
No 270
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0006 Score=66.63 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=97.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecccchhh-----cc----CC--------cHHHHHHHHHHHH-hcCC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVVSK-----WR----GD--------SEKLIKVLFELAR-HHAP 300 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~---~~i~v~~~~l~~~-----~~----g~--------se~~l~~~f~~a~-~~~p 300 (487)
-+.++|+.|+|||+++|++...++. ..+.++...+... ++ .. .+..-+.+....+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 4779999999999999977776632 2234443332211 11 11 1122222333333 3456
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc-cH---HHHhhccccccCCCCC
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL-DA---AMLRRLEKRILVPLPD 376 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L-d~---aL~rRf~~~i~~~~Pd 376 (487)
.++++||++.+.... -+..+. |.+.-.+.... -.++.++-..--..+ -+ .+..|+...+.+++.+
T Consensus 133 v~l~vdEah~L~~~~------le~Lrl----l~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA------LEALRL----LTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH------HHHHHH----HHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999885431 111111 21111111111 123333322111111 11 2233887778888889
Q ss_pred HHHHHHHHHHhCCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 377 TEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 377 ~eeR~~IL~~~l~~~~~~----~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
.++-...++..++..... .+..+..+...+.| .|..|.++|..|...+..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 998888888888665433 23346678888888 567788888888777654
No 271
>PHA02624 large T antigen; Provisional
Probab=97.86 E-value=4.2e-05 Score=83.09 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 316 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~ 316 (487)
++..+.++|+||||||||+++.+|++.++...+.|+++.-.+. |+..-...-.+.+|||+-.-+....
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccc
Confidence 4556789999999999999999999999766777875543211 2222111125888898853332110
Q ss_pred ccchhhHHHHHHHHHHHHHhcCC-cCC------C----CcEEEEEEeCCCCcccHHHHhhccccccCCC
Q 011400 317 EARSEHEASRRLKTELLIQMDGL-TQS------D----ELVFVLAATNLPWELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 317 ~~~~~~~~~~~i~~~Ll~~ld~~-~~~------~----~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~ 374 (487)
+-+... .-.-+..|-+.+||. .-. + ..-..|.|||. ..|+..+.-||..++.|..
T Consensus 496 ~Lp~G~--~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQ--GMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cCCccc--ccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 000113356667765 110 0 00123457775 6789999999988887764
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=0.00015 Score=67.45 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cC-----------------------CcH-----
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RG-----------------------DSE----- 285 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g-----------------------~se----- 285 (487)
++++||||||||+++..++.+. |.++++++..+-.... .| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887754 6667666643221110 00 000
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 286 KLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 286 ~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444455567889999999988764
No 273
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.83 E-value=0.00012 Score=70.66 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+++...-++++||||+|||+++..+|.+. +.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 345566678999999999999999998755 6778888776
No 274
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.2e-05 Score=67.95 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
|+|.||||+||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.79 E-value=3e-05 Score=83.84 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=47.6
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 273 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~ 273 (487)
-|+|+.|++++++++.+.+..... ++....+-++|.||||+|||+||++||+.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 378999999999999998833221 111234578999999999999999999977 346666544
No 276
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.79 E-value=1.5e-05 Score=61.41 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhc
Q 011400 450 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 482 (487)
Q Consensus 450 ~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g 482 (487)
+||++||..||++++||+++ ++.+|++|+++||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 69999999999999999996 6899999999998
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00047 Score=72.23 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=73.9
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccch--hh--
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--SK-- 279 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~l~--~~-- 279 (487)
..+.+++.+.+.+...+....... ....+..++|+||+|+||||.+..+|..+ +..+..+++.... ..
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ 224 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ 224 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH
Confidence 345566666555533322111110 01235679999999999999999999865 2344444433221 00
Q ss_pred ------------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 280 ------------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 280 ------------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
........+...+... ....+|+||.+.....+ ...+.++...++........++
T Consensus 225 L~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~L 291 (388)
T PRK12723 225 IQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHL 291 (388)
T ss_pred HHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEE
Confidence 1122333344433333 34579999999655311 1113334444443333335677
Q ss_pred EEEEeCCCCcccHHHHhhc
Q 011400 348 VLAATNLPWELDAAMLRRL 366 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf 366 (487)
|+.+|.....+.. +..+|
T Consensus 292 Vlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 292 AVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred EEcCCCCHHHHHH-HHHHh
Confidence 7777776666663 33444
No 278
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.75 E-value=0.00027 Score=75.57 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=55.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc------CC--------cHHHHHHHHHHHHhc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 298 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~------g~--------se~~l~~~f~~a~~~ 298 (487)
++.+..-++|+|+||+|||+|+..++... +.++++++..+-..... |. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 35566779999999999999999998866 56778887654332210 10 112244566666677
Q ss_pred CCcEEEechhhhHHhh
Q 011400 299 APSTIFLDEIDAIISQ 314 (487)
Q Consensus 299 ~p~IL~IDEiD~L~~~ 314 (487)
.|.+|+||.+..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
No 279
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.74 E-value=8.4e-05 Score=68.73 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=38.6
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 276 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l 276 (487)
++|.++..++|...+. ... ...++.++|+|++|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6788999999998874 111 1345789999999999999999998877433 777766554
No 280
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.72 E-value=0.00033 Score=73.11 Aligned_cols=78 Identities=24% Similarity=0.342 Sum_probs=54.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cCC--------cHHHHHHHHHHHHhcC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHHA 299 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g~--------se~~l~~~f~~a~~~~ 299 (487)
+.+..-++|+|+||+|||+++..+|... +.++++++..+-.... .|. .+..+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4566779999999999999999998765 4567777764322110 010 1223455666667778
Q ss_pred CcEEEechhhhHHhh
Q 011400 300 PSTIFLDEIDAIISQ 314 (487)
Q Consensus 300 p~IL~IDEiD~L~~~ 314 (487)
|.+|+||++..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=8.1e-05 Score=68.99 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
.|++.||||+||||+|+.|++.++.+++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 589999999999999999999999998888743
No 282
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.71 E-value=2.4e-05 Score=84.61 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=117.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccchhh-----ccCCc--------HHHHHHHHHHHHhcCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSK-----WRGDS--------EKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~~~~l~~~-----~~g~s--------e~~l~~~f~~a~~~~p~IL~ 304 (487)
.-.+|+.|.|||||-.++|++.+.. ..+|+.|+|..+... +.|.. .+..+..+..+. .+.||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGtlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGTLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCccH
Confidence 3469999999999999999998876 468999999766432 22211 122222233322 26999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------CCcCCCCcEEEEEEeCCCCc-------ccHHHHhhcccc
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDELVFVLAATNLPWE-------LDAAMLRRLEKR 369 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld--------~~~~~~~~VlVIatTn~p~~-------Ld~aL~rRf~~~ 369 (487)
+|||..|.- .+.+.||..++ +.. ..-.|-||++|+++-. +-+.|.=|...
T Consensus 413 ldeIgd~p~-------------~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~- 477 (606)
T COG3284 413 LDEIGDMPL-------------ALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNA- 477 (606)
T ss_pred HHHhhhchH-------------HHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcC-
Confidence 999977743 23444555554 222 2234788999987521 22333335532
Q ss_pred ccCCCCCHHHHH---HHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCC-----
Q 011400 370 ILVPLPDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAP----- 441 (487)
Q Consensus 370 i~~~~Pd~eeR~---~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~----- 441 (487)
..+.+|...+|. .+|.+++.+... .... .++..+..|....|.+++|++-+.++......+
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~----------l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~ 546 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKREND-WRLQ----------LDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIR 546 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccC-CCcc----------CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeE
Confidence 556667665554 455555544333 1122 334556667777777777777666654332211
Q ss_pred -CCCC--------CCCCCCCHHHHHHHHhccCCChhh
Q 011400 442 -DDEL--------PQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 442 -~d~~--------~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
.|.. .....+..+.+..|+...+.-+++
T Consensus 547 ~~dlp~~l~~~~~~~~~~~~~~~l~~al~~~~~~is~ 583 (606)
T COG3284 547 VSDLPPELLEEQATPREDIEKAALLAALQATNGNISE 583 (606)
T ss_pred cccCCHHHHhhhcccccchHHHHHHHHHHHcCCCHHH
Confidence 1110 112346677788888888777664
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00024 Score=73.91 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=62.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecccchh----------hccC------CcHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVVS----------KWRG------DSEKLIKVLFELA 295 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~-~~~i~v~~~~l~~----------~~~g------~se~~l~~~f~~a 295 (487)
+.....++|.||+|+||||++..||..+ | ..+..++...... ...| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 3445679999999999999999999864 3 3444444433210 0001 11112222222
Q ss_pred HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHH
Q 011400 296 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 362 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL 362 (487)
+.....+|+||.+..... ...+.+.+..+.........++|+.+|+..+.++..+
T Consensus 212 ~l~~~DlVLIDTaG~~~~------------d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQR------------DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HhcCCCEEEEcCCCCCcc------------cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 223457999999843211 1112233444444433445677888888777766543
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.69 E-value=0.00081 Score=79.00 Aligned_cols=136 Identities=24% Similarity=0.244 Sum_probs=88.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh------h-cc----CCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------K-WR----GDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~------~-~~----g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
-.+++||-|.||+|||+|..++|+..|..++.++.++-.. . .+ |+....-..++...+. ..-+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeeh
Confidence 3467999999999999999999999999999999875432 1 11 2222222222222222 36899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhc-----------CCcCCCCcEEEEEEeCCCC------cccHHHHhhccccc
Q 011400 308 IDAIISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRI 370 (487)
Q Consensus 308 iD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld-----------~~~~~~~~VlVIatTn~p~------~Ld~aL~rRf~~~i 370 (487)
+.... +.++..|-..+| -.-.......|+||-|..+ .|+..++.||.. +
T Consensus 1620 iNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V 1685 (4600)
T COG5271 1620 INLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-V 1685 (4600)
T ss_pred hhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-E
Confidence 96543 222322322222 1111223455666555443 499999999955 8
Q ss_pred cCCCCCHHHHHHHHHHhCCC
Q 011400 371 LVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.+...+.++...|+......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 89999999999998888754
No 285
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.66 E-value=0.00029 Score=71.68 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
..+++|+.|||+-|.|||+|.-.....+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457899999999999999999999887743
No 286
>PRK07261 topology modulation protein; Provisional
Probab=97.64 E-value=0.00013 Score=67.71 Aligned_cols=40 Identities=20% Similarity=0.505 Sum_probs=32.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhcc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 281 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~ 281 (487)
.+++.|+||+||||+|+.++..++.+++.++.-.....+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~ 41 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ 41 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc
Confidence 4899999999999999999999999888776544333333
No 287
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.62 E-value=3.9e-05 Score=87.25 Aligned_cols=199 Identities=21% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccC-chhhcCCC--CCCe-eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGLL--SPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~-~~~~~~~~--~~~~-gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
+....++.|.......+.+++...... +..+.... .... .++++||||+|||+.+..+|.++|..+++.+.++..+
T Consensus 316 p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS 395 (871)
T KOG1968|consen 316 PTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS 395 (871)
T ss_pred cccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCcccccc
Confidence 334455666665555666665443111 11122111 1112 3699999999999999999999999999999988765
Q ss_pred hccCC-------cHHHHHHHHH---HHH-hcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 279 KWRGD-------SEKLIKVLFE---LAR-HHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 279 ~~~g~-------se~~l~~~f~---~a~-~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
++... ....+...+. ... ... ..||++||+|.+... .+.....+...+. ... +
T Consensus 396 k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~----------dRg~v~~l~~l~~---ks~--~ 460 (871)
T KOG1968|consen 396 KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE----------DRGGVSKLSSLCK---KSS--R 460 (871)
T ss_pred ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch----------hhhhHHHHHHHHH---hcc--C
Confidence 53311 1112222220 000 011 239999999988651 1222333333333 111 3
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
-+|+++|.........+.|....++|+.|+..+...-+..++...... .+..++++.+.+ ++||++....
T Consensus 461 Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~ 531 (871)
T KOG1968|consen 461 PLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQ 531 (871)
T ss_pred CeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHH
Confidence 367888887776665666665778999999988887666666444333 344567777766 5677765443
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=97.61 E-value=0.0011 Score=68.16 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+.-++|.||||+||||++..+|..+ +..+..+++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35678999999999999999998866 4555555543
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.61 E-value=0.00044 Score=66.39 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=31.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++.+..-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35566779999999999999999999876 5677777653
No 290
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.61 E-value=6.4e-05 Score=68.94 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3567899999999999999999999999888854
No 291
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.61 E-value=0.00051 Score=66.97 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=48.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------c---------------cC--
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W---------------RG-- 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~---------------~g-- 282 (487)
+++..-+++.||||||||+++..++... +...++++..+-... + .+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4566779999999999999986655544 556666654321110 0 00
Q ss_pred CcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 283 DSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 283 ~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
..+..+..+........|.+++|||+-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012344445555555678999999998765
No 292
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.59 E-value=0.00027 Score=62.21 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.6
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|.|+.-+++.+..++...+..+.. ..|--+-|+|+||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p-----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNP-----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCC-----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46899999999999999777654421 222345589999999999999999986
No 293
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.59 E-value=0.00014 Score=68.88 Aligned_cols=121 Identities=14% Similarity=0.101 Sum_probs=56.2
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecccchhhccCC----cHH-------------HHHHHHHHHHhcCCc
Q 011400 243 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWRGD----SEK-------------LIKVLFELARHHAPS 301 (487)
Q Consensus 243 vLL~GppGtGKT~LArai-A~el---~~~~i~v~~~~l~~~~~g~----se~-------------~l~~~f~~a~~~~p~ 301 (487)
.+++|.||+|||+.|-.. .... |.+++. +...+.-..... ... .......-......+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999987555 4432 666554 443232111100 000 000111111111458
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCC
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVP 373 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~ 373 (487)
+|+|||++.+.+.+...... . ...+..+.... ...+-|+.+|..+..+|+.+++..+..+++.
T Consensus 82 liviDEa~~~~~~r~~~~~~---~----~~~~~~l~~hR--h~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK---V----PEIIEFLAQHR--HYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGGGCC--CTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc---c----hHHHHHHHHhC--cCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 99999999998876542110 0 11234443222 2335577899999999999988766666554
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.56 E-value=0.00063 Score=66.23 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=51.5
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------c-----------------
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------W----------------- 280 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~----------------- 280 (487)
.+++.+..++++|+||+|||+++..++.+. +.+.++++..+-... +
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 345667789999999999999999997653 666766665332111 0
Q ss_pred --cCCcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 281 --RGDSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 281 --~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
....+..+..+........|.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00112334444455555688999999998764
No 295
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.54 E-value=0.00059 Score=69.69 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=53.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
++++.+-++|+||||||||+|+-.++.+. +.+.++++.....+. .+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35666779999999999999988876654 566777765432211 11123333444444455
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 667899999999998764
No 296
>PF14516 AAA_35: AAA-like domain
Probab=97.53 E-value=0.0026 Score=65.44 Aligned_cols=174 Identities=17% Similarity=0.110 Sum_probs=94.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC-------------------------------
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 283 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~------------------------------- 283 (487)
.++.-+.+.||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 356679999999999999999987766 6778888776543211100
Q ss_pred cHHHHHHHHHHH---HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--C-CCcEEEEEEeCCCCc
Q 011400 284 SEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--S-DELVFVLAATNLPWE 357 (487)
Q Consensus 284 se~~l~~~f~~a---~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--~-~~~VlVIatTn~p~~ 357 (487)
........|+.. ....|-||+|||+|.+.... .........|-...+.-.. . ....++++.+..+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-------chHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 111122223221 22467899999999997531 1122333333332221111 1 122344444433322
Q ss_pred ccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 358 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 358 Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
....-.+ .+...+.++.-+.++-..+++.+-.. . ....++.+-..|.|.. .=+..+|...+
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP-~Lv~~~~~~l~ 244 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP-YLVQKACYLLV 244 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH-HHHHHHHHHHH
Confidence 2111111 33445666767999988888877422 1 1223788888888864 33444444443
No 297
>PHA02774 E1; Provisional
Probab=97.53 E-value=0.00051 Score=74.50 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=28.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 273 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~-v~~ 273 (487)
+..++++|+||||||||++|-+|++.++..++. ++.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 334689999999999999999999998654433 553
No 298
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.52 E-value=0.00063 Score=65.53 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=31.1
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~------~~~i~v~~~~ 275 (487)
.++.+..-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 345566678999999999999999998764 3 5667776643
No 299
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00077 Score=68.91 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=53.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
+++..+-+.++||||||||+||-.++.+. +...++++...-.+. .+...+..+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 35566778999999999999999887654 667777776432111 11122333333334445
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 667899999999999863
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=0.00024 Score=63.11 Aligned_cols=34 Identities=41% Similarity=0.637 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
|++.||||+||||+|+.++..++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44455544443
No 301
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00075 Score=65.39 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=31.2
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++++..-+.|+||||||||+++..++... +...++++..+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 345666778999999999999999998543 25677777644
No 302
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.43 E-value=0.0001 Score=73.10 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=49.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH------HhCCcEEEEecccchhhcc-CCcHHHHHHHHHH--------HHhcCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWR-GDSEKLIKVLFEL--------ARHHAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~------el~~~~i~v~~~~l~~~~~-g~se~~l~~~f~~--------a~~~~p~IL~ 304 (487)
...+||.||.|.|||+||+.|.. ++..+|++|+|..+.+... ...-..++..|.- .+....++||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 34599999999999999999854 5578999999998864311 0000111222211 1223357999
Q ss_pred echhhhHHhh
Q 011400 305 LDEIDAIISQ 314 (487)
Q Consensus 305 IDEiD~L~~~ 314 (487)
+|||..|..+
T Consensus 288 ldeigelgad 297 (531)
T COG4650 288 LDEIGELGAD 297 (531)
T ss_pred hHhhhhcCcc
Confidence 9999887644
No 303
>PRK06762 hypothetical protein; Provisional
Probab=97.43 E-value=0.0005 Score=63.05 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
+.-++|.|+||+||||+|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 34688999999999999999999997667677665554
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.43 E-value=0.0024 Score=62.42 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..++++...+|++||||+|||+++..++.+. |.+.++++.
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3456778889999999999999998876543 566666654
No 305
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.42 E-value=0.0027 Score=66.95 Aligned_cols=132 Identities=21% Similarity=0.183 Sum_probs=73.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
-++++||.+|||||+++.+.......+++++..++....... ....+ .+..+.......||||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~-~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLR-AYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHH-HHHHhhccCCceEEEecccCchh--------
Confidence 789999999999999999888876556666655554332211 11111 12222222336999999987631
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCCCHHHHHH-------------HHH
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRA-------------MFE 385 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~Pd~eeR~~-------------IL~ 385 (487)
. .+. +-...|.-. . .+++ .+++.. ..+.+.+..|. ..+.+.+-+..|... .++
T Consensus 109 --W-~~~---lk~l~d~~~--~-~v~i-tgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 109 --W-ERA---LKYLYDRGN--L-DVLI-TGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred --H-HHH---HHHHHcccc--c-eEEE-ECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 0 112 222222111 1 3433 333333 23445566685 447777778888754 566
Q ss_pred HhCCCCCCC
Q 011400 386 SLLPSQTGE 394 (487)
Q Consensus 386 ~~l~~~~~~ 394 (487)
.++...+..
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 666555543
No 306
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.42 E-value=0.0019 Score=68.41 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=85.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~s 284 (487)
..|.|.+++|+.+..++..-- ......+ ++..-+|||.|.|||.||-|.+-+-+-...-+|.-.-.. .-.|-+
T Consensus 331 PSIfG~~DiKkAiaClLFgGs--rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGS---SAAGLT 405 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGS--RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGS---SAAGLT 405 (729)
T ss_pred chhcCchhHHHHHHHHhhcCc--cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCc---ccccce
Confidence 468999999999998774321 1222222 345568999999999999999998776544433321100 000100
Q ss_pred HHHHH-----HHHHH--H-HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHH-hcCCc-CCCCcEEEEEEeCC
Q 011400 285 EKLIK-----VLFEL--A-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ-MDGLT-QSDELVFVLAATNL 354 (487)
Q Consensus 285 e~~l~-----~~f~~--a-~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~-ld~~~-~~~~~VlVIatTn~ 354 (487)
...++ .++-+ | -....+|++|||+|++-....- .-+++.. .+-+.. =.|+. .-+.+.-|++++|.
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRV--AIHEAME---QQTISIAKAGITT~LNSRtSVLAAANp 480 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRV--AIHEAME---QQTISIAKAGITTTLNSRTSVLAAANP 480 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhh--HHHHHHH---hhhHHHhhhcceeeecchhhhhhhcCC
Confidence 00000 00000 0 0012379999999998543111 1111111 111111 11221 12234557888887
Q ss_pred CCc-------------ccHHHHhhccccccCCCCCHH
Q 011400 355 PWE-------------LDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 355 p~~-------------Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
+.. +-+.+++||+.++-+.--..+
T Consensus 481 vfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 481 VFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDE 517 (729)
T ss_pred ccccccccCCcccccchhhhHhhhccEEEEEeccCcc
Confidence 621 347899999987766554333
No 307
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.00049 Score=66.30 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=48.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEec-ccchhhccCC-------------cHHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELAR 296 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el--------~~~~i~v~~-~~l~~~~~g~-------------se~~l~~~f~~a~ 296 (487)
.+.+.|+.|||||||||+.|-+|.-+ ...+..++. +++.+...|. ..-+-..++...+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 45679999999999999999999866 233444443 2333222221 1123345667788
Q ss_pred hcCCcEEEechhhh
Q 011400 297 HHAPSTIFLDEIDA 310 (487)
Q Consensus 297 ~~~p~IL~IDEiD~ 310 (487)
.+.|-|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 89999999999954
No 308
>PRK04296 thymidine kinase; Provisional
Probab=97.39 E-value=0.00085 Score=63.44 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
-.+++||||+|||+++..++..+ +..++.++
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999888876 55555553
No 309
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.35 E-value=0.0022 Score=65.92 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=92.0
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh--------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-------- 278 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-------- 278 (487)
..+.+.+...+.|...+...- -.-|..|.|+|-.|||||.+++.+.+.++.+.+.+++-+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 356677888888888763211 134567899999999999999999999999998888755421
Q ss_pred -------hccCCcH----HHHHH---HHHH--HHhc--CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 279 -------KWRGDSE----KLIKV---LFEL--ARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 279 -------~~~g~se----~~l~~---~f~~--a~~~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
...|... ..+.. .|.+ +..+ +...|++|.+|.+-.. ...+++.++..-. +.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~e-l~ 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYE-LL 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHH-Hh
Confidence 1111111 11222 2222 1111 3458899999998521 1234444443332 22
Q ss_pred CCCCcEEEEEEeCCCCcccHHHHhh---c-cccccCCCCCHHHHHHHHHHhCC
Q 011400 341 QSDELVFVLAATNLPWELDAAMLRR---L-EKRILVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~Ld~aL~rR---f-~~~i~~~~Pd~eeR~~IL~~~l~ 389 (487)
+.+. + +|.....++ ......+ + -..++||.|+.++-..|+.+--.
T Consensus 146 ~~~~-i-~iils~~~~--e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 146 NEPT-I-VIILSAPSC--EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CCCc-e-EEEEecccc--HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 2332 2 222222211 1122222 1 24578899999999998877654
No 310
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.35 E-value=0.0028 Score=60.23 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=24.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+..++.||||||||++++.+...+ +..++.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 468889999999999999988765 556665543
No 311
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.34 E-value=0.00058 Score=68.06 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccchhh-
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSK- 279 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~-~~~l~~~- 279 (487)
++++++-.+...+.|.+++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 456666666667777666532 224589999999999999999988773 3344442 1121111
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
............+..+....|++|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 011111234556666777899999999994
No 312
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.34 E-value=0.0016 Score=60.52 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHH--------------------HHHHHHHHHHhcCCc
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS 301 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~--------------------~l~~~f~~a~~~~p~ 301 (487)
.+++.|+||+|||++|..++.+++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777765443211 1111 233333221 13356
Q ss_pred EEEechhhhHHhhh
Q 011400 302 TIFLDEIDAIISQR 315 (487)
Q Consensus 302 IL~IDEiD~L~~~r 315 (487)
+++||-+..+....
T Consensus 79 ~VlID~Lt~~~~n~ 92 (170)
T PRK05800 79 CVLVDCLTTWVTNL 92 (170)
T ss_pred EEEehhHHHHHHHH
Confidence 89999999987643
No 313
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0069 Score=63.40 Aligned_cols=59 Identities=25% Similarity=0.251 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.+.+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..||..+ +..+..+++
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3556666666664444322211 1234679999999999999999999877 444555554
No 314
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.33 E-value=0.002 Score=61.42 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+-++|.||.|+||||+.+.++..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467899999999999999999853
No 315
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.00044 Score=65.83 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=41.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-ccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~----~~i~v~~-~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
-++|.||+|+||||++++++..+.. .++.+.. .++.. ..+|.........+..+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999987742 2232211 11110 01121122344455566667899999999
Q ss_pred h
Q 011400 308 I 308 (487)
Q Consensus 308 i 308 (487)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 316
>PRK13947 shikimate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=65.74 Aligned_cols=31 Identities=42% Similarity=0.548 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999987654
No 317
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.32 E-value=0.00044 Score=68.74 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l~~ 278 (487)
..+++++.-.....+.+.+++.... ....++++.||+|+||||+++++...+. ..++.+.. .++.-
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 3456777666666666666664432 2346899999999999999999999873 33444321 12211
Q ss_pred hcc-------CCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 279 KWR-------GDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 279 ~~~-------g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
... .........++..+-...|++|+++|+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 0122345556677777889999999994
No 318
>PRK03839 putative kinase; Provisional
Probab=97.32 E-value=0.0002 Score=66.75 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999887654
No 319
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.31 E-value=0.0028 Score=61.24 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh--------------------------c----
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------------------W---- 280 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~--------------------------~---- 280 (487)
.+++++..+|+.||||||||+++..++.+. |.+.++++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 445677789999999999999999876533 777777764332110 0
Q ss_pred ---cCCcHHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 281 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 281 ---~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
.......+..+.+......+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123344555556666778899999999999
No 320
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.30 E-value=0.0019 Score=60.01 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=47.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-c----------------cCCcHHHHHHHHHHHHhcCCcEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-W----------------RGDSEKLIKVLFELARHHAPSTIFL 305 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~-~----------------~g~se~~l~~~f~~a~~~~p~IL~I 305 (487)
+|+.|++|+|||++|..++...+.+.+++....-.+. + ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999987777777765433211 0 0112223333332221 4679999
Q ss_pred chhhhHHhhhc
Q 011400 306 DEIDAIISQRG 316 (487)
Q Consensus 306 DEiD~L~~~r~ 316 (487)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99998877643
No 321
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.30 E-value=0.00098 Score=57.33 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
+++++||+|+|||+++-.++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887766
No 322
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.26 E-value=0.00027 Score=63.60 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+|+|+|+||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887654
No 323
>PRK00625 shikimate kinase; Provisional
Probab=97.26 E-value=0.00028 Score=65.83 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988775
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.25 E-value=0.005 Score=61.62 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+++-++|.||+|+||||++..+|..+ +..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445678899999999999999998876 5555555543
No 325
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.0029 Score=60.92 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
No 326
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.001 Score=69.41 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=45.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------chhhccCCcHHHHH---HHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT-----T-FFNISASS---------------VVSKWRGDSEKLIK---VLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~-----~-~i~v~~~~---------------l~~~~~g~se~~l~---~~f~~a~ 296 (487)
...+|.||||+|||+|++.|++.... . ++.+...- +.+.+.......++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45889999999999999999997743 2 22222111 11222222333333 2333333
Q ss_pred h----cCCcEEEechhhhHHhhh
Q 011400 297 H----HAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 297 ~----~~p~IL~IDEiD~L~~~r 315 (487)
. ....+|||||++.+....
T Consensus 250 ~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHHHH
Confidence 2 245699999999997654
No 327
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.22 E-value=0.00041 Score=72.80 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
...++++.||+|||||+++.+++... | -.++.+.+..... ...+.. -....+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~-------~~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS-------TRQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH-------HHHHhh--hccCCEEEEEcCCCCc
Confidence 45689999999999999999988762 3 2222233322111 011111 1235799999998754
No 328
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.21 E-value=0.0078 Score=69.70 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=78.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec--ccch-hhc------------cC---------------CcHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVV-SKW------------RG---------------DSEKLIKV 290 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~--~~l~-~~~------------~g---------------~se~~l~~ 290 (487)
+-++++||+|.|||+++...+...+ ++.-++. .+-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999988776 5544443 2110 000 00 00112233
Q ss_pred HHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHHhhccc
Q 011400 291 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 368 (487)
Q Consensus 291 ~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~rRf~~ 368 (487)
++..... ..|.+|+|||++.+... .....+..|+..+ .....+|| ++.....++- .++- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333333 56889999999877311 1122333343322 22334444 5544222321 2211 111
Q ss_pred cccCC----CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 369 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 369 ~i~~~----~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
.+.+. .-+.+|-.+++...+.... .......+.+.|+|..-
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~--~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPI--EAAESSRLCDDVEGWAT 220 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCC--CHHHHHHHHHHhCChHH
Confidence 23333 4588888888876654321 22345667777777643
No 329
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00027 Score=63.57 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999988874
No 330
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.20 E-value=0.00032 Score=65.29 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
|++.||||+||||+|+.+|+.++. ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999985 445555554
No 331
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.20 E-value=0.0025 Score=68.34 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc------cCC--------cHHHHHHHHHHHHhc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARHH 298 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~------~g~--------se~~l~~~f~~a~~~ 298 (487)
++.+..-++|.|+||+|||+|+..++... +.++++++..+-.... .|. .+..+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 34566779999999999999999998765 4567777764432211 010 011244555666677
Q ss_pred CCcEEEechhhhHHh
Q 011400 299 APSTIFLDEIDAIIS 313 (487)
Q Consensus 299 ~p~IL~IDEiD~L~~ 313 (487)
.|.+|+||.+..+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998864
No 332
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.20 E-value=0.0081 Score=62.22 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.+|+|++|||..|||||+|.-.+...+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999998887554
No 333
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.20 E-value=0.027 Score=59.28 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=27.3
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
..|..+|-.|.-+.|.+.-.+.+.-+..+...+...
T Consensus 197 k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 197 KPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 347778877766778888888888888888877553
No 334
>PRK14532 adenylate kinase; Provisional
Probab=97.19 E-value=0.00034 Score=65.55 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
.++|.||||+||||+++.+|+.++..++ +..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHH
Confidence 4899999999999999999999986554 4445543
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.005 Score=65.50 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~ 275 (487)
.++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 34578999999999999999888754 34566666544
No 336
>PRK09354 recA recombinase A; Provisional
Probab=97.17 E-value=0.0033 Score=64.92 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=51.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
+++..+-++|+||||||||+|+-.++.+. +...++++...-.+. .+...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 35566778999999999999999887544 667777765442111 01112333333333445
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999875
No 337
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.16 E-value=0.0011 Score=70.98 Aligned_cols=149 Identities=23% Similarity=0.289 Sum_probs=84.9
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE---------eccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI---------SASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v---------~~~~ 275 (487)
..|.|.+.+|+.|.-++..-.. .....+ ++..-+||+.|.|-|.||-|.|.+.+-....+-.. .+.-
T Consensus 301 PSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 4689999999999877744321 112222 44556799999999999999999988553222111 1110
Q ss_pred chhhccCCcHHHHHH-HHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHh------cCC-cCCCCcEE
Q 011400 276 VVSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM------DGL-TQSDELVF 347 (487)
Q Consensus 276 l~~~~~g~se~~l~~-~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~l------d~~-~~~~~~Vl 347 (487)
..++ ...++.+.. ..-.| .-+|++|||||++..- .+....+.+++- .|+ ..-+.+.-
T Consensus 379 TtD~--eTGERRLEAGAMVLA---DRGVVCIDEFDKMsDi----------DRvAIHEVMEQqtVTIaKAGIHasLNARCS 443 (818)
T KOG0479|consen 379 TTDQ--ETGERRLEAGAMVLA---DRGVVCIDEFDKMSDI----------DRVAIHEVMEQQTVTIAKAGIHASLNARCS 443 (818)
T ss_pred eecc--ccchhhhhcCceEEc---cCceEEehhcccccch----------hHHHHHHHHhcceEEeEeccchhhhcccee
Confidence 0111 112333321 00111 1269999999998532 122222222211 122 12234577
Q ss_pred EEEEeCCCCc-------------ccHHHHhhccccccC
Q 011400 348 VLAATNLPWE-------------LDAAMLRRLEKRILV 372 (487)
Q Consensus 348 VIatTn~p~~-------------Ld~aL~rRf~~~i~~ 372 (487)
|++++|..+. |+..|++||+..+.+
T Consensus 444 VlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 444 VLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred eeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 8999997642 788999999875433
No 338
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0017 Score=61.87 Aligned_cols=69 Identities=25% Similarity=0.283 Sum_probs=41.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFELAR 296 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~~a~ 296 (487)
|+-++|.||+|+||||.+-.+|..+ +..+.-+++...... +. . .....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998876 444444443322110 00 1 12233445555555
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.....+|+||=.
T Consensus 81 ~~~~D~vlIDT~ 92 (196)
T PF00448_consen 81 KKGYDLVLIDTA 92 (196)
T ss_dssp HTTSSEEEEEE-
T ss_pred hcCCCEEEEecC
Confidence 555579999876
No 339
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.15 E-value=0.0013 Score=66.83 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=46.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-ccch-------hhccCCcHHHHHHHHHHHHhcCCcEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISA-SSVV-------SKWRGDSEKLIKVLFELARHHAPSTIFLD 306 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~-~~l~-------~~~~g~se~~l~~~f~~a~~~~p~IL~ID 306 (487)
..++++.||+|+||||++++++..+. ..++.+.- .++. ....+........++..+-.+.|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 46899999999999999999998862 33433321 1111 00011111145667777888899999999
Q ss_pred hhh
Q 011400 307 EID 309 (487)
Q Consensus 307 EiD 309 (487)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 993
No 340
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.15 E-value=0.0025 Score=64.09 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 275 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~-~~~i~v~~~~ 275 (487)
+.+.+.+.+.+...+........+...+..++|.||+|+||||++..+|..+ + ..+..++...
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3445555555544332111111122345678999999999999999998866 3 5666666544
No 341
>PRK13949 shikimate kinase; Provisional
Probab=97.15 E-value=0.00039 Score=64.53 Aligned_cols=31 Identities=42% Similarity=0.623 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6999999999999999999999999888765
No 342
>PRK10536 hypothetical protein; Provisional
Probab=97.14 E-value=0.0044 Score=61.27 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+..+.+.......+..++.. ..-+++.||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 44455666566655554421 136899999999999999999985
No 343
>PRK04328 hypothetical protein; Provisional
Probab=97.12 E-value=0.0079 Score=59.34 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=28.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.++++...+|++||||||||+++..++.+. |-+.++++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 345667789999999999999998876542 455555543
No 344
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.12 E-value=0.00055 Score=68.37 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=43.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cccchhhcc-------CC------cHHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKT----------TFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~----------~~i~v~-~~~l~~~~~-------g~------se~~l~~~f~~a~ 296 (487)
.+++|.||+|+||||+.+.++..+.. .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999998732 222221 112211111 10 1112334666777
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.+.|.+|++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 345
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.12 E-value=0.00042 Score=64.42 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=29.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+-++|.|+||+||||+|+.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999999887776654433
No 346
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.0068 Score=59.23 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=95.2
Q ss_pred CeeEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEecccchhhc-cCCcHHHHHHHHHHHHh----cCCcEEE
Q 011400 240 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELARH----HAPSTIF 304 (487)
Q Consensus 240 ~~gvLL~GppG-tGKT~LAraiA~el~~---------~~i~v~~~~l~~~~-~g~se~~l~~~f~~a~~----~~p~IL~ 304 (487)
.+..||.|..+ +||..++..+++.+.. .++.+....-..+. ..-.-..++.+.+.+.. ....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 46799999998 9999999998887622 23343321100000 01123445555444432 2345999
Q ss_pred echhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 305 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 305 IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
|+++|.|.. ...+.||..++. ++..+++|..|..+..+.+.+++|+.. +.+..|+...-.++.
T Consensus 95 I~~ae~mt~-------------~AANALLKtLEE---PP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMNL-------------NAANSCLKILED---APKNSYIFLITSRAASIISTIRSRCFK-INVRSSILHAYNELY 157 (263)
T ss_pred EechHHhCH-------------HHHHHHHHhhcC---CCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCHHHHHHHH
Confidence 999999853 345668888873 344566777888889999999999955 889999888888877
Q ss_pred HHhCCCCCCCCCCCHHHHHHH
Q 011400 385 ESLLPSQTGEESLPYDLLVER 405 (487)
Q Consensus 385 ~~~l~~~~~~~~~~l~~la~~ 405 (487)
...+...... ..++.+.+.
T Consensus 158 ~~~~~p~~~~--~~l~~i~~~ 176 (263)
T PRK06581 158 SQFIQPIADN--KTLDFINRF 176 (263)
T ss_pred HHhccccccc--HHHHHHHHH
Confidence 7776554332 224444443
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0019 Score=61.34 Aligned_cols=23 Identities=52% Similarity=0.814 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 011400 243 ILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~ 265 (487)
++|+|+||+|||++|+.+|+++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999983
No 348
>PRK13695 putative NTPase; Provisional
Probab=97.10 E-value=0.0033 Score=58.27 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998775
No 349
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.10 E-value=0.0027 Score=74.92 Aligned_cols=134 Identities=18% Similarity=0.193 Sum_probs=86.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh--hccCC----cHH---HHHHHHHHHHhcCCcEEEechhhhH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--KWRGD----SEK---LIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~--~~~g~----se~---~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
-.+||.||+.+|||++...+|.+.|..|+.++-.+... .|.|. ... .-..++-.|-..+ --|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 35999999999999999999999999999998755432 23332 111 1112233333333 47899999654
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCc-----------CCCCcEEEEEEeCCCC------cccHHHHhhccccccCCC
Q 011400 312 ISQRGEARSEHEASRRLKTELLIQMDGLT-----------QSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 312 ~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-----------~~~~~VlVIatTn~p~------~Ld~aL~rRf~~~i~~~~ 374 (487)
.. .++..|-..+|+.. .+....+++||-|.|. .|..|++.||-. ++|..
T Consensus 968 pT-------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFdd 1033 (4600)
T COG5271 968 PT-------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDD 1033 (4600)
T ss_pred cH-------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhccc
Confidence 32 23333333444321 1223455666667774 388999999954 78877
Q ss_pred CCHHHHHHHHHHhCC
Q 011400 375 PDTEARRAMFESLLP 389 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~ 389 (487)
-.+++...||+..++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 777888888887764
No 350
>PRK06217 hypothetical protein; Validated
Probab=97.10 E-value=0.00053 Score=64.24 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+|.|+||+||||+++.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877654
No 351
>PRK14531 adenylate kinase; Provisional
Probab=97.09 E-value=0.00057 Score=64.08 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
..+++.||||+||||+++.+|+.+|.+.+. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999877654 44443
No 352
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.09 E-value=0.0068 Score=60.12 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
+.+..-++|.||||+|||+++..++... +.++++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4556678999999999999999887764 566666654
No 353
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.09 E-value=0.00049 Score=61.22 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+++.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988775
No 354
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.012 Score=62.05 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=26.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 275 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~ 275 (487)
+.-++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4558899999999999999999754 44455555433
No 355
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.08 E-value=0.0005 Score=61.87 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876553
No 356
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.07 E-value=0.0054 Score=58.32 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+..-++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3445699999999999999999994
No 357
>PF13479 AAA_24: AAA domain
Probab=97.07 E-value=0.004 Score=59.90 Aligned_cols=68 Identities=25% Similarity=0.298 Sum_probs=39.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecccc-hhhc------cCCcHHHHHHHHHHH--HhcCCcEEEechhh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSV-VSKW------RGDSEKLIKVLFELA--RHHAPSTIFLDEID 309 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~-i~v~~~~l-~~~~------~g~se~~l~~~f~~a--~~~~p~IL~IDEiD 309 (487)
+..++|||+||+|||++|..+ +.++ +.+..+.. ...+ .-.+-..+...+..+ ......+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 346999999999999999988 3332 22222211 0011 011233344444332 23456799999888
Q ss_pred hH
Q 011400 310 AI 311 (487)
Q Consensus 310 ~L 311 (487)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 76
No 358
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.07 E-value=0.00051 Score=64.34 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
|+|.||||+|||++++.||+.++..++. ..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 7999999999999999999998876654 44443
No 359
>PRK13948 shikimate kinase; Provisional
Probab=97.06 E-value=0.00066 Score=63.85 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56688999999999999999999999999998655
No 360
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00072 Score=63.39 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.|+|.||||+||||+|+.||+. .++..++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 455566655543
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.05 E-value=0.0015 Score=67.16 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=47.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccchh------------h-ccCCcHHHHHHHHHHHHhcCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS------------K-WRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~-~~~l~~------------~-~~g~se~~l~~~f~~a~~~~p~I 302 (487)
...++++.|++|+||||+++++...+. ..++.+- ..++.- . ..|...-....++..+....|..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 346899999999999999999999874 2333331 112210 0 01122223566778888899999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++.|+.
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999994
No 362
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.04 E-value=0.002 Score=63.68 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
....++|.||+|+|||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 4456999999999999999999998754
No 363
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.0046 Score=60.58 Aligned_cols=134 Identities=12% Similarity=0.213 Sum_probs=74.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccchhhc--------cCC---c---HHHH-------HHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW--------RGD---S---EKLI-------KVLF 292 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~---~i~v~~~~l~~~~--------~g~---s---e~~l-------~~~f 292 (487)
...+-.+++.|++|||||+++..+...+... ++.+.. .....+ +.. . +..+ ....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~-~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP-EYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec-CCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3455679999999999999999998877432 232222 111111 000 0 1111 1111
Q ss_pred HHHHh---cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011400 293 ELARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 369 (487)
Q Consensus 293 ~~a~~---~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~ 369 (487)
..... ..+.+|++||+-. . .........++. ..+--.+.+|..+.....+++.++.-.+..
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~---~--------~~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~ 152 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGD---K--------KLKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYF 152 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCC---c--------hhhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEE
Confidence 11111 2357999999732 0 011222233332 223334777888888889999998877776
Q ss_pred ccCCCCCHHHHHHHHHHhC
Q 011400 370 ILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 370 i~~~~Pd~eeR~~IL~~~l 388 (487)
+.+. .+......|++.+.
T Consensus 153 i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 153 IIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred EEec-CcHHHHHHHHHhcc
Confidence 6554 46666666666553
No 364
>PRK14530 adenylate kinase; Provisional
Probab=97.02 E-value=0.00071 Score=65.03 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.||+.++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776644
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.02 E-value=0.0076 Score=59.83 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++++..-++++||||||||+++..++.+. |-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45667779999999999999999987643 5566666543
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0081 Score=62.59 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=60.1
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----h----
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----K---- 279 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~---- 279 (487)
+.+.+++.+.+.+...+..+..+. ..+++-++|.||+|+||||++..+|..+ +..+..+++..... .
T Consensus 179 ~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 179 HLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred cHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHH
Confidence 357788888887766554443332 3456779999999999999999999866 44555555433211 0
Q ss_pred --------ccCCcHHHHHHHHHHHHh-cCCcEEEechhhh
Q 011400 280 --------WRGDSEKLIKVLFELARH-HAPSTIFLDEIDA 310 (487)
Q Consensus 280 --------~~g~se~~l~~~f~~a~~-~~p~IL~IDEiD~ 310 (487)
+.......+...+..++. ....+|+||=.-.
T Consensus 257 ae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 257 ADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred hhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 112233444444444442 2347888887643
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.01 E-value=0.0013 Score=68.00 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=44.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-ccch---------hhccCCcHHHHHHHHHHHHhcCCcEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 305 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~-~~l~---------~~~~g~se~~l~~~f~~a~~~~p~IL~I 305 (487)
...+++.||+|+||||+.+++...+. ..++.+.- .++. ....|.........+..+-...|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35689999999999999999998774 23333321 1111 0111221223445566666789999999
Q ss_pred chhh
Q 011400 306 DEID 309 (487)
Q Consensus 306 DEiD 309 (487)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.00061 Score=62.23 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+-+.|||||||||+++.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999876
No 369
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.00 E-value=0.0016 Score=62.35 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=29.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
-++|+||+|||||.+|=++|+.+|.+++..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 37899999999999999999999999999987665543
No 370
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00062 Score=63.13 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.+++|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998765
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.98 E-value=0.037 Score=58.79 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---------------hcc----C-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------KWR----G-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---------------~~~----g-~se~~l~~~f~~a 295 (487)
++.-++|.|++|+||||++..+|..+ |..+..+++..... .+. + .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 66666666533210 001 0 1112233345555
Q ss_pred HhcCCcEEEechhh
Q 011400 296 RHHAPSTIFLDEID 309 (487)
Q Consensus 296 ~~~~p~IL~IDEiD 309 (487)
+.....+|+||=.-
T Consensus 179 ~~~~~DvViIDTaG 192 (429)
T TIGR01425 179 KKENFDIIIVDTSG 192 (429)
T ss_pred HhCCCCEEEEECCC
Confidence 55556899998764
No 372
>PTZ00202 tuzin; Provisional
Probab=96.97 E-value=0.02 Score=60.64 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=48.0
Q ss_pred CCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 205 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 205 ~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
...+++|.+.....|.+.+...- ...++-+.|.||+|||||++++.+...++...+.++..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 36789999999999998874311 12335688999999999999999999998777766654
No 373
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.97 E-value=0.0087 Score=56.19 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~ 262 (487)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
No 374
>PRK06547 hypothetical protein; Provisional
Probab=96.97 E-value=0.00088 Score=62.44 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++.-|++.|++|+|||++++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999887776543
No 375
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.96 E-value=0.0028 Score=57.50 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 666777765444
No 376
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.96 E-value=0.00063 Score=62.17 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++|.||+|+||||+++.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866543
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.95 E-value=0.0013 Score=61.74 Aligned_cols=72 Identities=26% Similarity=0.401 Sum_probs=45.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cchhh---cc----------CCcHHHHHHHHHHHHhcCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK---WR----------GDSEKLIKVLFELARHHAPS 301 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-~l~~~---~~----------g~se~~l~~~f~~a~~~~p~ 301 (487)
.....++|.||+|+||||++++++..+. ...+.+... ++... +. +........++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3456799999999999999999998763 223322211 11100 00 11123355566667778899
Q ss_pred EEEechhh
Q 011400 302 TIFLDEID 309 (487)
Q Consensus 302 IL~IDEiD 309 (487)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999993
No 378
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.95 E-value=0.0009 Score=65.27 Aligned_cols=31 Identities=32% Similarity=0.598 Sum_probs=27.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..++|.||||+||||+|+.+|+.++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998766655
No 379
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.95 E-value=0.0013 Score=68.74 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=44.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-cch-----------hhccCCcHHHHHHHHHHHHhcCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~-----~~~i~v~~~-~l~-----------~~~~g~se~~l~~~f~~a~~~~p~IL 303 (487)
..+|+.||+|+||||+++++.+++. ..++.+.-. ++. ...+|.........+..+-...|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4589999999999999999988772 344544211 111 01112111234455666677899999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++.|+.
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999994
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.94 E-value=0.0067 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.++-.++|+||+|||||+|.|.+|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3556679999999999999999999854
No 381
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.93 E-value=0.0063 Score=61.88 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
++....-++++||||+|||+++-.+|... +...++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 34556668999999999999999998763 23677777654
No 382
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.93 E-value=0.0011 Score=61.78 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=29.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
...|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999988877653
No 383
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.92 E-value=0.018 Score=55.53 Aligned_cols=40 Identities=25% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.++++...+++.|+||+|||+++..++.+. +.+.++++..
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 345667789999999999999999887643 6667666653
No 384
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.92 E-value=0.0034 Score=58.76 Aligned_cols=72 Identities=22% Similarity=0.179 Sum_probs=43.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccc--hhhccCCc-HHHHHHHHHHHHhcCCcEEEechhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSV--VSKWRGDS-EKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l--~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.+..-+.|.||.|+|||||++.++..... --+.++...+ ......-+ ...-+..+..+-...|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 45567889999999999999999986521 1122222111 00100011 1223334555666788999999974
No 385
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.92 E-value=0.0053 Score=62.74 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
+++...-++|+||||+|||+++-.+|... +...++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 35566678999999999999999998763 33677777654
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.92 E-value=0.0089 Score=56.80 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred eeEEEEcCCCChHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA 261 (487)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 387
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.90 E-value=0.001 Score=61.29 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
..++|.|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987653
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.90 E-value=0.0039 Score=57.31 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=45.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchh--------hccC----C-cHHHHHHHHHHHHhcCCc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS--------KWRG----D-SEKLIKVLFELARHHAPS 301 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~--------~~~g----~-se~~l~~~f~~a~~~~p~ 301 (487)
+.+...+.|.||+|+|||+|.+.++.... .--+.++..++.. ...+ - .....+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998652 1112333222110 0010 0 112333455666677899
Q ss_pred EEEechhh
Q 011400 302 TIFLDEID 309 (487)
Q Consensus 302 IL~IDEiD 309 (487)
+|++||-.
T Consensus 103 illlDEP~ 110 (163)
T cd03216 103 LLILDEPT 110 (163)
T ss_pred EEEEECCC
Confidence 99999974
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.90 E-value=0.0074 Score=61.65 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++....-+.|+||||+|||+++..+|-.. +...++++...
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 345666678899999999999998877422 35677777544
No 390
>PRK14528 adenylate kinase; Provisional
Probab=96.89 E-value=0.001 Score=62.70 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+++.||||+|||++++.+++.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999998776554
No 391
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0026 Score=61.61 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccch
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 277 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~ 277 (487)
.+.-|.+.|++|+||||+|+.|+..+ |.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34568899999999999999999998 6677777665553
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.88 E-value=0.038 Score=56.62 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhccccCc-hhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 213 ENAKRLLKEAVVMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~-~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+++.+.+.+...+... ..+.....++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 445555655554433211 1111111345678899999999999999999877 445555544
No 393
>PRK13764 ATPase; Provisional
Probab=96.88 E-value=0.0014 Score=72.21 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=41.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----hhhccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~-~~~l-----~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...++|++||||+||||++++++..+. ..+..+. ..++ ...+.. ...........+-...|.+|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 346899999999999999999998874 2232321 1111 111210 00111222233345779999999984
No 394
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.07 Score=53.30 Aligned_cols=89 Identities=20% Similarity=0.249 Sum_probs=54.4
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHH
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
+++-.+++.+.+..+.... ..|..+.||.|.+|+||++++|..|.-.+..++.+....-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 3455556666666544221 14567899999999999999999999989999888754321 11233455
Q ss_pred HHHHHHHHH-hcCCcEEEechh
Q 011400 288 IKVLFELAR-HHAPSTIFLDEI 308 (487)
Q Consensus 288 l~~~f~~a~-~~~p~IL~IDEi 308 (487)
++.++..+. ...|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666555 345777777553
No 395
>PRK13946 shikimate kinase; Provisional
Probab=96.88 E-value=0.00091 Score=62.76 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
++.|+|.|++|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357999999999999999999999999988765
No 396
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.87 E-value=0.0025 Score=62.65 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
|+|.|+||+||||+|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466777765444
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.87 E-value=0.001 Score=61.82 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
-+++.||||+||||+++.+++.+|...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58899999999999999999998765443
No 398
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.86 E-value=0.044 Score=55.86 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHHHh--c-CCcEEEechhhhHHhhhcccc----hhhHHHHHHHHHHHHHhcCCcCCCCcEEE--EEEeCC---C
Q 011400 288 IKVLFELARH--H-APSTIFLDEIDAIISQRGEAR----SEHEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---P 355 (487)
Q Consensus 288 l~~~f~~a~~--~-~p~IL~IDEiD~L~~~r~~~~----~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV--IatTn~---p 355 (487)
+..++++... . .|.++-||++..+.....-.. .-+...-.+...|+..+.+-..-....+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 3444444433 2 477888999999987632110 11112234555566664443332222333 555432 2
Q ss_pred C--cccHHHHhhcc---------------------ccccCCCCCHHHHHHHHHHhCCCCCCC
Q 011400 356 W--ELDAAMLRRLE---------------------KRILVPLPDTEARRAMFESLLPSQTGE 394 (487)
Q Consensus 356 ~--~Ld~aL~rRf~---------------------~~i~~~~Pd~eeR~~IL~~~l~~~~~~ 394 (487)
. .++.++..+=. ..+.++..+.+|-+.+++.+....-..
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 2 35555554321 146788889999999999987665554
No 399
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.86 E-value=0.0019 Score=68.91 Aligned_cols=94 Identities=21% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCee-EEEEcCCCChHHHHHHHHHHHhCCcEEEEe-ccc---c
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASS---V 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~g-vLL~GppGtGKT~LAraiA~el~~~~i~v~-~~~---l 276 (487)
-..++++++......+.+...+.. |.| +|++||.|+||||...++.++++.+...+. ..+ .
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~--------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNR--------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhC--------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 345577777777777777777633 345 678999999999999999999865433221 111 1
Q ss_pred hhhccCCcH--H----HHHHHHHHHHhcCCcEEEechhh
Q 011400 277 VSKWRGDSE--K----LIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 277 ~~~~~g~se--~----~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.-..+.+.. . .....++..-...|+||++.||.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111111100 0 12233444556789999999994
No 400
>PLN02200 adenylate kinase family protein
Probab=96.86 E-value=0.0013 Score=64.39 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+..+++.||||+||||+|+.+|+.+|.. .++.+++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 345678999999999999999999999864 566666653
No 401
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.84 E-value=0.0078 Score=62.16 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=29.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
++....-..|+||||||||+|+..+|-.. +...++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 35555668899999999999999887422 24667776643
No 402
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.00091 Score=57.83 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el 264 (487)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 403
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.84 E-value=0.013 Score=57.05 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 34566679999999999999999887754 677777764
No 404
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.013 Score=56.18 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=72.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---------------------------------hc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------------------------KW 280 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---------------------------------~~ 280 (487)
++.+.-+++.|+.|||||.|.+.++.-+ +....+++...-.- ..
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 5556668999999999999999998744 44444443211000 01
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.....+.+..+.+..+.....|++||-+..+.... +..-...++..+..+...+. + || .|-+|..+++
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-v-Ii-lTvhp~~l~e 172 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-V-II-LTVHPSALDE 172 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-E-EE-EEeChhhcCH
Confidence 12244566677777777777899999998886542 11122334444444443443 3 33 4556788998
Q ss_pred HHHhhcc
Q 011400 361 AMLRRLE 367 (487)
Q Consensus 361 aL~rRf~ 367 (487)
++.-|+.
T Consensus 173 ~~~~rir 179 (235)
T COG2874 173 DVLTRIR 179 (235)
T ss_pred HHHHHHH
Confidence 8887663
No 405
>PF13245 AAA_19: Part of AAA domain
Probab=96.81 E-value=0.002 Score=51.71 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHh
Q 011400 242 GILLFGPPGTGKT-MLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT-~LAraiA~el 264 (487)
-+++.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666999999999 5666666655
No 406
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.81 E-value=0.016 Score=62.74 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh--------------cc--------------CC
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------WR--------------GD 283 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------------~~--------------g~ 283 (487)
.++.+...+|+.||||+|||+|+-.++.+. |-+.++++..+-... +. ..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 345677789999999999999999998865 556666654332211 00 01
Q ss_pred cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 284 SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 284 se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
.+..+..+.+......|.+|+||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 145666777777888899999999998754
No 407
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.81 E-value=0.0039 Score=67.40 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCee-EEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG-ILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSV 276 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~g-vLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l 276 (487)
...++++++-.++..+.+..++.. +.| ++++||+|+||||+..++.+++. ..++.+-- .+.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 345678887777778888776632 234 78999999999999999888774 33444421 111
Q ss_pred hhhccCC------cHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 277 VSKWRGD------SEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 277 ~~~~~g~------se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.-...++ ...........+-...|++|++.|+.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11123345556667889999999994
No 408
>PRK02496 adk adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=61.92 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.++|.||||+|||++++.+|..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
No 409
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.037 Score=56.14 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 356789999999999999999998888444
No 410
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.79 E-value=0.0011 Score=63.38 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
|++.||||+||||+|+.+|+.++...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766553
No 411
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0054 Score=55.70 Aligned_cols=74 Identities=28% Similarity=0.341 Sum_probs=44.8
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchh-------hccC----Cc-HHHHHHHHHHHHhcCCcE
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVS-------KWRG----DS-EKLIKVLFELARHHAPST 302 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~-------~~~g----~s-e~~l~~~f~~a~~~~p~I 302 (487)
+.+...+.|.||+|+|||+|+++++..+... -+.++...+.. ...+ -+ ....+..+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 3566779999999999999999999876321 23333322110 0000 11 122223345555567899
Q ss_pred EEechhhh
Q 011400 303 IFLDEIDA 310 (487)
Q Consensus 303 L~IDEiD~ 310 (487)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999853
No 412
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.78 E-value=0.0042 Score=63.64 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=45.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccchhh------ccCCcHHHHHHHHHHHHhcCCcEEEech
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDE 307 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~-~~~l~~~------~~g~se~~l~~~f~~a~~~~p~IL~IDE 307 (487)
..++|+.|++|+||||++++++..+ +..++.+- ..++... +.....-....++..+-.+.|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4679999999999999999999876 23344332 1222110 0011112355667777789999999999
Q ss_pred h
Q 011400 308 I 308 (487)
Q Consensus 308 i 308 (487)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
No 413
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.77 E-value=0.0094 Score=55.72 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecccchhh----c---cC--------------
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASSVVSK----W---RG-------------- 282 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el-------------~~~~i~v~~~~l~~~----~---~g-------------- 282 (487)
+....-++|+||||+|||+++..++..+ +.++++++...-... + .+
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 3445568999999999999999998865 135666654322100 0 00
Q ss_pred ---------------CcHHHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 283 ---------------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ---------------~se~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
.....+..+.+.+.. ..|.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455555666 57899999999999875
No 414
>PRK04040 adenylate kinase; Provisional
Probab=96.77 E-value=0.0016 Score=61.62 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh--CCcEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 269 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el--~~~~i 269 (487)
+.-++++|+|||||||+++.+++.+ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3568999999999999999999999 55443
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.77 E-value=0.0062 Score=56.22 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
+++.||||+|||++++.++..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 6889999999999999998876 56677776553
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.76 E-value=0.035 Score=59.07 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---CCc-HHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---GDS-EKLIKVLFEL 294 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g~s-e~~l~~~f~~ 294 (487)
+|.-+++.|++|+||||++..+|..+ |..+..+++...... +. +.. .......+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 46779999999999999988888764 456766666533211 00 111 2333455555
Q ss_pred HHhcCCcEEEechhhh
Q 011400 295 ARHHAPSTIFLDEIDA 310 (487)
Q Consensus 295 a~~~~p~IL~IDEiD~ 310 (487)
+....+.+|+||=.-.
T Consensus 178 ~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 178 AKENGFDVVIVDTAGR 193 (428)
T ss_pred HHhcCCCEEEEeCCCc
Confidence 6566667999987643
No 417
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.76 E-value=0.0022 Score=66.49 Aligned_cols=23 Identities=52% Similarity=0.638 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 418
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.76 E-value=0.0013 Score=63.17 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+++||||+|||++++.||..++...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998765553
No 419
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.001 Score=61.40 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.++++|.|||||||+++.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998887765
No 420
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.74 E-value=0.012 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=19.0
Q ss_pred eeEEEEcCCCChHHH-HHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTM-LAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~-LAraiA~el 264 (487)
+.+++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 421
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.031 Score=59.57 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=47.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~ 293 (487)
.++.-+++.||+|+||||++..+|..+ |..+..+++...... +. + ...........
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346778999999999999888887755 556666665432211 10 1 12233344555
Q ss_pred HHHhcCCcEEEechhhhH
Q 011400 294 LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 294 ~a~~~~p~IL~IDEiD~L 311 (487)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 566666789999977443
No 422
>PTZ00035 Rad51 protein; Provisional
Probab=96.73 E-value=0.01 Score=61.25 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=29.7
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~ 275 (487)
.++....-+.|+||||+|||+++..++... +...++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 345666668899999999999999987533 33456666543
No 423
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.73 E-value=0.0077 Score=61.60 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh------C---CcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el------~---~~~i~v~~~~ 275 (487)
++.+..-+.++||||+|||+++..++... + ...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 35666778999999999999999987632 1 2567776654
No 424
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.72 E-value=0.0024 Score=65.14 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+.+...|+|.|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 467788999999999999999999999999998543
No 425
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.72 E-value=0.0062 Score=66.72 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=40.5
Q ss_pred cccchHHHHHH---HHhhhhhhhhhhh------hcccCCC--ceeeeccCCCcccceeeeeecCccchHH
Q 011400 10 LDFDIRALTKC---LKEGIITSRFIIS------KFIIGPP--HAFFYSFGSPPFQFSLAIQLAGCCSVET 68 (487)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (487)
+..||+-+|.- +..|++-+=-.+. -...|++ +++.|+|+||.+-.-+++..++-||..+
T Consensus 154 i~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~ 223 (604)
T COG4178 154 IQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLT 223 (604)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHH
Confidence 34788877652 3345543332222 3346777 5688999999999998888888888876
No 426
>PRK14527 adenylate kinase; Provisional
Probab=96.71 E-value=0.0013 Score=61.89 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.-+++.||||+||||+|+.+++.++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34569999999999999999999999865544
No 427
>PLN02674 adenylate kinase
Probab=96.71 E-value=0.0018 Score=63.70 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=30.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
+...++|.||||+||+|+++.||+.++.. .++..++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~GdllR 67 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDMLR 67 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHHH
Confidence 34569999999999999999999999864 444455543
No 428
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.70 E-value=0.005 Score=58.45 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccchhhc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKW 280 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~~~~ 280 (487)
..|.-+++.|+||+|||+++..+..++ +..++.++..++....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 456779999999999999999999998 7888999887776543
No 429
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.015 Score=60.70 Aligned_cols=113 Identities=20% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccchhhcc------C--------CcHHHHHHHHHHHHhcCC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHAP 300 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~~~~l~~~~~------g--------~se~~l~~~f~~a~~~~p 300 (487)
+-+..-+||-|.||.|||||.-.++..+ ..++.+|++.+-..... | -.+-.+..+...+...+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4556678999999999999988888876 23789998766443211 1 135567788888889999
Q ss_pred cEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 301 STIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
.+++||-|..+....-++ ...-..-+.....|...-. .++-.+++++-.
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK---~~~i~~fiVGHV 219 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK---TKNIAIFIVGHV 219 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH---HcCCeEEEEEEE
Confidence 999999999998764222 2222223444455544432 333334454443
No 430
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.70 E-value=0.02 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=22.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFN 270 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~ 270 (487)
+.+|+++|.|||++|-++|-.. |..+..
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999999998765 444443
No 431
>PRK05973 replicative DNA helicase; Provisional
Probab=96.69 E-value=0.023 Score=55.75 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.++.+..-++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 345677789999999999999998887755 6666666543
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.68 E-value=0.0085 Score=61.02 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=46.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-cccchhh---c---------cCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK---W---------RGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~-~~~l~~~---~---------~g~se~~l~~~f~~a~~~~p~I 302 (487)
....++++.||+|+||||++++++..+. ...+.+. ..++... . .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 4557899999999999999999998773 2222221 1111100 0 0111223455677777789999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
No 433
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.68 E-value=0.0048 Score=55.56 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhhccC-CcH-HHHHHHHHHHHhcCCcEEEechhhh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRG-DSE-KLIKVLFELARHHAPSTIFLDEIDA 310 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~~~g-~se-~~l~~~f~~a~~~~p~IL~IDEiD~ 310 (487)
+.+...+.|.||+|+|||+|++.++..... --+.++..... .|.. -+. ..-+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i-~~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKI-GYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEE-EEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456677999999999999999999986521 11122111000 0100 111 2223344556667889999999753
No 434
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.67 E-value=0.0049 Score=62.10 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=27.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-+++.|+|||||||+|+.+++.+. .++.++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4588999999999999999999983 3344454444
No 435
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.67 E-value=0.0028 Score=49.68 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC-KTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el-~~~~i~v 271 (487)
+.+.|+||+|||++++.+++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2444444
No 436
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.67 E-value=0.0025 Score=60.71 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el 264 (487)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
No 437
>PRK13808 adenylate kinase; Provisional
Probab=96.67 E-value=0.0092 Score=61.24 Aligned_cols=34 Identities=24% Similarity=0.550 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.|+|+||||+|||++++.|+..++...+. ..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec--ccHHH
Confidence 48999999999999999999999875444 44544
No 438
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.67 E-value=0.0066 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+.+..-+.|.||.|+|||||.+.++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 355667899999999999999999743
No 439
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.67 E-value=0.0057 Score=62.65 Aligned_cols=71 Identities=23% Similarity=0.433 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cccchh------hccCCcHHHHHHHHHHHHhcCCcEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS------KWRGDSEKLIKVLFELARHHAPSTIFLD 306 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~-~~~l~~------~~~g~se~~l~~~f~~a~~~~p~IL~ID 306 (487)
...++++.|++|+|||+++++++.+. ...++.+. ..++.- .+.....-....++..+-.+.|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 44689999999999999999999874 12333322 112210 0111112235667778888999999999
Q ss_pred hhh
Q 011400 307 EID 309 (487)
Q Consensus 307 EiD 309 (487)
|+-
T Consensus 227 EiR 229 (319)
T PRK13894 227 EVR 229 (319)
T ss_pred ccC
Confidence 993
No 440
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.66 E-value=0.037 Score=50.99 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=73.4
Q ss_pred EcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHH
Q 011400 246 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 325 (487)
Q Consensus 246 ~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~ 325 (487)
.+.+||||||++.+|++-++- +-.+.-.++.++ ...+.++.+.+........++|+|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 478999999999999998873 344444555443 345566666666644455689998655443322
Q ss_pred HHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHH--------HhhccccccC--CCCCHHHHHHHHHHhCCCCC
Q 011400 326 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM--------LRRLEKRILV--PLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 326 ~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL--------~rRf~~~i~~--~~Pd~eeR~~IL~~~l~~~~ 392 (487)
+++.+.+-..-.........+-+|+-.-..+...+.+ +.|=+.+-.+ ...+...-..|++.++++..
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcC
Confidence 2233322222222222223455555553333322223 2344444444 33456777778888775543
No 441
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.64 E-value=0.0021 Score=75.11 Aligned_cols=141 Identities=20% Similarity=0.243 Sum_probs=81.6
Q ss_pred CCCCeeEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhc---------------CC
Q 011400 237 LSPWKGILLFGPPGTGKTML-AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH---------------AP 300 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~L-AraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~---------------~p 300 (487)
+...++++++||||+|||+| .-++-+++-..++.++.+.-. .++..+.. ++.-..+ ..
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 46668999999999999995 567777777777777755432 12222222 2221111 11
Q ss_pred cEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEEEeCCCCcc-----cHHHHhhcc
Q 011400 301 STIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWEL-----DAAMLRRLE 367 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIatTn~p~~L-----d~aL~rRf~ 367 (487)
.|||.|||+ |...+.-. +..--..+.+. .-+|+.. .-.++++.+++|.+.+. ...+.||-
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~-----e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~- 1637 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPPTVIVFLRPLV-----ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP- 1637 (3164)
T ss_pred eEEEeeccC-CccccccCCCceEEeeHHHH-----HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-
Confidence 399999998 43322111 10000111111 1122221 22458889999988653 34555543
Q ss_pred ccccCCCCCHHHHHHHHHHhCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
..+++..|.......|.+.++..
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHH
Confidence 44778899998888888877643
No 442
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.63 E-value=0.038 Score=53.90 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 011400 243 ILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~e 263 (487)
-+|.||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
No 443
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.63 E-value=0.0092 Score=55.47 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566779999999999999999999865
No 444
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.62 E-value=0.0069 Score=63.46 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+...++|.||||+|||++++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4556699999999999999999999863
No 445
>PRK10436 hypothetical protein; Provisional
Probab=96.61 E-value=0.0054 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccchh
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 278 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~-~~l~~ 278 (487)
..++++++-.+...+.+.+.+.. +..-+|+.||+|+||||+..++..+++ ..++.+-- .+..-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 45678888777778888877633 234588999999999999988887774 33443321 11111
Q ss_pred hc-----cC-CcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 279 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 279 ~~-----~g-~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
.. ++ .........+..+-...|++|+|.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 11 111234455666677889999999994
No 446
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.61 E-value=0.0015 Score=58.98 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=26.0
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 245 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 245 L~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
|.||||+|||++|+.||++++. ..++..++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHH
Confidence 5799999999999999999976 4555556544
No 447
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.01 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3566779999999999999999999975
No 448
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.60 E-value=0.014 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++..++.||.|+|||++.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999986543
No 449
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.59 E-value=0.012 Score=60.76 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh---------hcc---------------C
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS---------KWR---------------G 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~---------~~~---------------g 282 (487)
++.+..-+.++|+||+|||+++..+|-.. +...++++...-.. .+. -
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 34556668899999999999999887432 23577777654110 000 0
Q ss_pred CcHHH---HHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 283 DSEKL---IKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ~se~~---l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
..+.. +..+........+.+|+||-+-.+...
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRT 233 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHH
Confidence 01111 222222234457889999999988754
No 450
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.0022 Score=57.17 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.+..-++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455678999999999999999999999864
No 451
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.59 E-value=0.0078 Score=68.25 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+-++|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997755
No 452
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.003 Score=63.24 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=46.8
Q ss_pred CCee-EEEEcCCCChHHHHHHHHHHHhCC----cEEEEe---------cccch-hhccCCcHHHHHHHHHHHHhcCCcEE
Q 011400 239 PWKG-ILLFGPPGTGKTMLAKAVATECKT----TFFNIS---------ASSVV-SKWRGDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 239 ~~~g-vLL~GppGtGKT~LAraiA~el~~----~~i~v~---------~~~l~-~~~~g~se~~l~~~f~~a~~~~p~IL 303 (487)
.++| ||++||.|+||||...++-.+++. +++.+- -..+. ..-+|.-.......++.|-...|+||
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 3445 788999999999999999988853 333331 11111 12334444445556667777889999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++-|+-
T Consensus 203 lvGEmR 208 (353)
T COG2805 203 LVGEMR 208 (353)
T ss_pred EEeccc
Confidence 999984
No 453
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.57 E-value=0.0051 Score=63.56 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=47.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEec-ccchhh--------c----cCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVSK--------W----RGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~-~~l~~~--------~----~g~se~~l~~~f~~a~~~~p~I 302 (487)
....++++.||+|+||||++++++..+.. .++.+.- .++.-. + .+...-....++..+..+.|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34578999999999999999999998732 3333211 111100 0 0111223456777778889999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999983
No 454
>PRK04182 cytidylate kinase; Provisional
Probab=96.57 E-value=0.0021 Score=59.18 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|+|.|+||||||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999988765
No 455
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.53 E-value=0.017 Score=54.94 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
.|+|+.|++|+|||++++.++..+ ...++.++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999988766 3456666543
No 456
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.083 Score=57.40 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.....+.|.||+|+||||++..||..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999998764
No 457
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.01 Score=65.72 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++|...+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6888899999999999999999997744
No 458
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.0023 Score=64.70 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=34.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
++-++|.||+++|||-+|-.+|++++.++++++...+..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr 41 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYR 41 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcC
Confidence 356899999999999999999999999999998765543
No 459
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.52 E-value=0.0023 Score=58.50 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 77766
No 460
>PRK01184 hypothetical protein; Provisional
Probab=96.52 E-value=0.0023 Score=59.71 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
-|+|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999987 788888777554
No 461
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.52 E-value=0.0025 Score=66.75 Aligned_cols=44 Identities=34% Similarity=0.471 Sum_probs=36.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++|..-.+.++++|.+- ..|+|+.||||.||||+|+++|.-+
T Consensus 244 ~~ledY~L~dkl~eRL~er-----------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 244 LSLEDYGLSDKLKERLEER-----------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred echhhcCCCHHHHHHHHhh-----------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 3467777777788888763 3689999999999999999999966
No 462
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.51 E-value=0.0025 Score=58.33 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
|.++|++|+|||++|+.+++.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999886553
No 463
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.51 E-value=0.0075 Score=61.99 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=44.4
Q ss_pred CC-cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-CcEEEE
Q 011400 206 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNI 271 (487)
Q Consensus 206 ~~-di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-~~~i~v 271 (487)
|+ ++.|+++++.+|.+.+...-.. +....+-++|.||+|+|||+|++.+-+-+. .+++.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l 120 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTL 120 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEe
Confidence 44 8999999999999977443221 123345688999999999999999988773 344444
No 464
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.50 E-value=0.0054 Score=61.31 Aligned_cols=70 Identities=26% Similarity=0.278 Sum_probs=38.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh---hc-cCCcHHHHHHHHH----HHHhcCCcEEEechhhhH
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKVLFE----LARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~---~~-~g~se~~l~~~f~----~a~~~~p~IL~IDEiD~L 311 (487)
|+|+|-||+|||++|+.|+..+ +..++.++...+.- .| ....++.++..+. .+-.. ..|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999999976 56777777544431 12 1234555554333 33223 369999998776
Q ss_pred Hh
Q 011400 312 IS 313 (487)
Q Consensus 312 ~~ 313 (487)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 465
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.50 E-value=0.0073 Score=66.64 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cch--
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVV-- 277 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~-~l~-- 277 (487)
.++++++-.+...+.+.+++.. +...||++||+|+||||+..++.++++ ..++.+--. +..
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 4567777777777777776633 223478999999999999998888774 234433211 111
Q ss_pred ---hhccC-CcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 278 ---SKWRG-DSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 278 ---~~~~g-~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
...+. .........+..+-...|.+|++.|+.
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 00001 111224455666777899999999994
No 466
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.47 E-value=0.016 Score=53.55 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||.|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455678999999999999999999865
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.021 Score=61.87 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=51.0
Q ss_pred cCCCCCCeeEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccchhh--------------cc--------------
Q 011400 234 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSK--------------WR-------------- 281 (487)
Q Consensus 234 ~~~~~~~~gvLL~GppGtGKT~LAraiA~e----l~~~~i~v~~~~l~~~--------------~~-------------- 281 (487)
..++++.+.+|+.||||||||++|..++.+ .|-+.++++..+-... +.
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 344677788999999999999999998543 2566666654321110 00
Q ss_pred --------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 282 --------GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 282 --------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
-.....+..+........+..|+||=+..+..
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~ 134 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQ 134 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhh
Confidence 01123444555566666778999997766643
No 468
>PRK08233 hypothetical protein; Provisional
Probab=96.47 E-value=0.0032 Score=58.20 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK-TTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~-~~~i~v~ 272 (487)
.-|.+.|+||+||||+|+.|+..++ ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477899999999999999999985 4444444
No 469
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.46 E-value=0.0041 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+++-++|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998875
No 470
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.45 E-value=0.0097 Score=67.72 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=25.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+-++|.|+||||||++++++...+ |..++.+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap 404 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL 404 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 457899999999999999997654 555555533
No 471
>PLN02840 tRNA dimethylallyltransferase
Probab=96.44 E-value=0.0024 Score=67.33 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-++|.||+|+|||+++..||.+++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765443
No 472
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.43 E-value=0.013 Score=55.70 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
-+.++|++|+|||++++.+++.+|.+++. +..+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHH
Confidence 48899999999999999999988887764 44443
No 473
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.42 E-value=0.0028 Score=63.83 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=30.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+++.||+|+|||++|..+|.+++..+++++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999998888776444
No 474
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.42 E-value=0.037 Score=60.25 Aligned_cols=78 Identities=22% Similarity=0.202 Sum_probs=50.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh--------------cc------------C---
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------WR------------G--- 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~--------------~~------------g--- 282 (487)
++++..-+|++|+||+|||+++..++.+. |-+.++++..+-... +. .
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 34567789999999999999999886543 556666654332110 00 0
Q ss_pred -------CcHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 283 -------DSEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 283 -------~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
..+..+..+.+......|..++||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 1122344455556667889999999988754
No 475
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.41 E-value=0.0039 Score=57.78 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-++|.|+||+||||+++.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4556799999999999999999999885
No 476
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.032 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.39 E-value=0.028 Score=54.62 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+...++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445689999999999999999988
No 478
>PRK14526 adenylate kinase; Provisional
Probab=96.39 E-value=0.0034 Score=60.46 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||||+++.+|+.++.+.+ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 4889999999999999999999886554 444443
No 479
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.037 Score=57.59 Aligned_cols=116 Identities=11% Similarity=0.015 Sum_probs=60.5
Q ss_pred CcEEEechhhhHHh----hhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe--CCCC--------------ccc
Q 011400 300 PSTIFLDEIDAIIS----QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT--NLPW--------------ELD 359 (487)
Q Consensus 300 p~IL~IDEiD~L~~----~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT--n~p~--------------~Ld 359 (487)
|.++.||++.++.. .+.+...-.-..-.+...+...+.+-...+ .++.++. .-+. .++
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g--~vi~a~s~~~~~~a~~h~gv~~y~pr~llg 393 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFG--SVIMAISGVTTPSAFGHLGVAPYVPRKLLG 393 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccc--eEEEEecccccchhccccccccCCchHhcC
Confidence 56888999999987 322211111122344444555555443333 2233333 1111 122
Q ss_pred HHHHh---hccccccCCCCCHHHHHHHHHHhCCCCCCCC----CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 360 AAMLR---RLEKRILVPLPDTEARRAMFESLLPSQTGEE----SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 360 ~aL~r---Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~----~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
+...+ -| ..|+++.++.+|-..++..++...-... +..++++--.+ +.+|+.++.+|.
T Consensus 394 ~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 394 EEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 22222 34 3377888999999999998875543321 22334333333 667777776664
No 480
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.38 E-value=0.028 Score=63.66 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=50.1
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~e---l~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~ 296 (487)
++.+.+-++++||||||||+|+..++.. .|...++++..+-... .....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 3566677899999999999999765543 3566677765442210 01112333333333344
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999986
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.37 E-value=0.015 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....-+.|.||+|+|||||.|++-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4455689999999999999999965
No 482
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.37 E-value=0.0069 Score=62.19 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=30.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..++|.|+||+|||||++.++..++.+++.-.+.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 469999999999999999999999988865554433
No 483
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.36 E-value=0.0075 Score=63.63 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.|.|.|++|||||||+++||..+|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 3579999999999999999999999877543
No 484
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.34 E-value=0.011 Score=55.09 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+...+.|.||+|+|||+|++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566779999999999999999999865
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.33 E-value=0.0035 Score=58.19 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 486
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.33 E-value=0.005 Score=56.43 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 278 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~ 278 (487)
.-|.|+|.||+|||+||+++.+.+ +.+.+.+++..+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 458899999999999999999977 78888888766643
No 487
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.32 E-value=0.024 Score=56.28 Aligned_cols=113 Identities=20% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh---------hccCC---------------c
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS---------KWRGD---------------S 284 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~---------~~~g~---------------s 284 (487)
....-.=|+||||+|||.|+-.+|-.. +...++++...-.+ .+.-. .
T Consensus 36 ~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 36 PTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCH
Confidence 333335599999999999999887654 34577777543211 11100 0
Q ss_pred H---HHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 285 E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 285 e---~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
+ ..+..+.......+..+|+||-+-.++...-.+..+.......+..++..+..+....+ +.||.|
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 1 11222222223345679999999999865322222222334556666666665544333 444434
No 488
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.32 E-value=0.035 Score=65.43 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=48.9
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
-||+|||+..|..... +.+...+..... ..+.-.|.+|.+|.+|. .|...++.-|..+|.|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 3899999988764311 122222222221 12334577888999986 5777788888888999888888
Q ss_pred HHHHHHHH
Q 011400 379 ARRAMFES 386 (487)
Q Consensus 379 eR~~IL~~ 386 (487)
+-+.||-.
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 87777644
No 489
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.28 E-value=0.021 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..+++.||.|||||++.++|...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 456799999999999999999988773
No 490
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.26 E-value=0.0038 Score=59.51 Aligned_cols=104 Identities=21% Similarity=0.267 Sum_probs=56.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
.....++|.|+-|+|||++.+.|+.+. +.-+.... ........+ .. .-|+.+||++.+...
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~------~~kd~~~~l----~~--~~iveldEl~~~~k~--- 110 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF------DDKDFLEQL----QG--KWIVELDELDGLSKK--- 110 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHh----ccCccccC------CCcHHHHHH----HH--hHheeHHHHhhcchh---
Confidence 344568899999999999999997662 21111111 011111111 11 148999999887522
Q ss_pred cchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCCCccc-HHHHhhc
Q 011400 318 ARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPWELD-AAMLRRL 366 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p~~Ld-~aL~rRf 366 (487)
+ ...+++-+-...+.+. ...+...+|+|||..+-|. +.=-|||
T Consensus 111 ---~---~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf 162 (198)
T PF05272_consen 111 ---D---VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF 162 (198)
T ss_pred ---h---HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE
Confidence 1 1233333322222221 1224466789999876443 3344687
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.25 E-value=0.0087 Score=57.83 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
++.+...+++.||||+|||+++..++.+. +.+.+.++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45677789999999999999999877543 56677776543
No 492
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.25 E-value=0.12 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.-++|.||+|+||||++..||..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34568899999999999999999866
No 493
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.24 E-value=0.0072 Score=59.83 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=32.2
Q ss_pred CCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 235 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 235 ~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
..++..+.+|++|+||||||+++..++.+. |.+.++++..+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 345667789999999999999999998765 66777776543
No 494
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.24 E-value=0.028 Score=51.79 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||+|++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566779999999999999999999875
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.23 E-value=0.0069 Score=56.03 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++.-+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 44568999999999999999999987 4445556543
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=96.23 E-value=0.0035 Score=64.15 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=28.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
+..++|.||+|+|||+|+..||..++..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 3468999999999999999999999877666543
No 497
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.21 E-value=0.0042 Score=63.24 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=30.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.-+++.||+|+|||++|..+|++++..++..+.-.+
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qv 40 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQV 40 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccce
Confidence 468999999999999999999999988777665433
No 498
>PRK14529 adenylate kinase; Provisional
Probab=96.21 E-value=0.0056 Score=59.44 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||||+++.|+..++.+.+ +..++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 4889999999999999999999987654 334443
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.18 E-value=0.0049 Score=57.81 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=24.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
..++|.||+|+||||+++.|+...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998776543
No 500
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.16 E-value=0.006 Score=58.11 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+.-+++.|+||+|||++|+.+|.+++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 34689999999999999999999988754
Done!