Query 011400
Match_columns 487
No_of_seqs 357 out of 3143
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 4.7E-48 1.6E-52 399.9 21.9 258 193-469 134-395 (405)
2 4b4t_H 26S protease regulatory 100.0 1.7E-46 5.9E-51 392.8 23.4 262 198-478 200-467 (467)
3 4b4t_M 26S protease regulatory 100.0 2.7E-46 9.1E-51 391.7 20.5 255 197-470 171-429 (434)
4 4b4t_I 26S protease regulatory 100.0 2.1E-46 7.1E-51 388.9 19.0 254 197-469 172-429 (437)
5 4b4t_L 26S protease subunit RP 100.0 9.9E-46 3.4E-50 387.7 19.2 254 196-468 170-427 (437)
6 3cf2_A TER ATPase, transitiona 100.0 8.1E-47 2.8E-51 420.9 9.2 289 195-484 465-765 (806)
7 4b4t_K 26S protease regulatory 100.0 2.6E-44 8.8E-49 376.4 24.1 253 198-469 163-421 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.4E-43 1.2E-47 356.8 26.6 283 199-484 4-321 (322)
9 3eie_A Vacuolar protein sortin 100.0 1.2E-42 4E-47 352.4 23.5 286 196-484 7-320 (322)
10 2qp9_X Vacuolar protein sortin 100.0 5.2E-42 1.8E-46 352.6 23.7 295 187-484 31-353 (355)
11 2zan_A Vacuolar protein sortin 100.0 4E-41 1.4E-45 355.9 18.7 294 188-484 115-443 (444)
12 3cf2_A TER ATPase, transitiona 100.0 6.3E-41 2.1E-45 373.6 16.0 266 200-469 197-465 (806)
13 3cf0_A Transitional endoplasmi 100.0 5.9E-40 2E-44 329.6 21.5 287 194-481 2-300 (301)
14 3d8b_A Fidgetin-like protein 1 100.0 4.2E-38 1.5E-42 323.6 23.5 289 188-484 65-356 (357)
15 3b9p_A CG5977-PA, isoform A; A 100.0 4E-38 1.4E-42 314.0 21.0 290 189-486 3-296 (297)
16 2x8a_A Nuclear valosin-contain 100.0 5.3E-37 1.8E-41 304.6 20.0 261 200-470 3-271 (274)
17 3vfd_A Spastin; ATPase, microt 100.0 2.3E-36 8E-41 313.8 24.3 288 190-485 98-388 (389)
18 3h4m_A Proteasome-activating n 100.0 9.8E-35 3.4E-39 287.6 23.1 269 199-486 9-284 (285)
19 3hu3_A Transitional endoplasmi 100.0 6.2E-35 2.1E-39 311.6 15.2 279 202-484 199-483 (489)
20 1lv7_A FTSH; alpha/beta domain 100.0 3E-32 1E-36 266.3 24.0 247 199-465 4-254 (257)
21 1ypw_A Transitional endoplasmi 100.0 9.4E-36 3.2E-40 335.6 -1.5 285 198-483 468-764 (806)
22 2ce7_A Cell division protein F 100.0 3.3E-32 1.1E-36 288.9 24.5 246 201-466 10-259 (476)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.9E-32 6.4E-37 267.1 14.9 248 202-469 1-255 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.8E-30 6.3E-35 277.0 21.1 260 201-480 25-295 (499)
25 1ixz_A ATP-dependent metallopr 100.0 5.7E-30 1.9E-34 249.8 22.6 245 197-461 6-254 (254)
26 2r62_A Cell division protease 100.0 9E-33 3.1E-37 271.3 -0.9 253 199-470 3-260 (268)
27 1iy2_A ATP-dependent metallopr 100.0 1.8E-28 6.1E-33 242.8 25.3 244 198-461 31-278 (278)
28 1ypw_A Transitional endoplasmi 100.0 6.7E-28 2.3E-32 271.6 17.1 265 200-468 197-464 (806)
29 3t15_A Ribulose bisphosphate c 99.9 3.1E-26 1.1E-30 229.1 11.8 174 237-416 33-222 (293)
30 2c9o_A RUVB-like 1; hexameric 99.9 5.2E-24 1.8E-28 225.6 -6.1 203 201-420 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.9 2.4E-21 8.4E-26 193.2 13.1 214 207-431 31-268 (309)
32 3m6a_A ATP-dependent protease 99.8 1.3E-21 4.6E-26 211.4 8.8 267 159-465 44-343 (543)
33 3uk6_A RUVB-like 2; hexameric 99.8 7E-20 2.4E-24 187.1 18.3 221 202-464 39-331 (368)
34 1ofh_A ATP-dependent HSL prote 99.8 4.4E-20 1.5E-24 183.4 14.6 180 207-387 15-214 (310)
35 3pfi_A Holliday junction ATP-d 99.8 3.9E-19 1.4E-23 179.8 21.2 224 196-466 18-257 (338)
36 1d2n_A N-ethylmaleimide-sensit 99.8 6.9E-19 2.4E-23 173.0 14.4 195 206-409 32-229 (272)
37 3hws_A ATP-dependent CLP prote 99.8 1.4E-18 4.9E-23 178.1 14.5 244 208-462 16-348 (363)
38 1g41_A Heat shock protein HSLU 99.8 1.1E-17 3.7E-22 175.5 19.4 177 207-385 15-346 (444)
39 3pvs_A Replication-associated 99.8 1.3E-17 4.4E-22 176.1 19.0 217 198-469 17-250 (447)
40 2chg_A Replication factor C sm 99.8 5.7E-17 1.9E-21 151.6 19.9 204 199-461 9-224 (226)
41 1hqc_A RUVB; extended AAA-ATPa 99.7 1.1E-17 3.6E-22 167.8 15.5 195 200-422 5-215 (324)
42 2z4s_A Chromosomal replication 99.7 4.5E-17 1.5E-21 171.6 20.1 223 200-465 98-334 (440)
43 1jbk_A CLPB protein; beta barr 99.7 1.7E-18 5.9E-23 158.2 7.1 166 196-384 11-194 (195)
44 3u61_B DNA polymerase accessor 99.7 1.3E-17 4.4E-22 167.8 13.5 158 197-388 16-178 (324)
45 1njg_A DNA polymerase III subu 99.7 1.1E-16 3.9E-21 151.1 18.7 206 199-461 15-249 (250)
46 1l8q_A Chromosomal replication 99.7 5.3E-17 1.8E-21 163.5 17.4 198 201-424 5-214 (324)
47 3pxg_A Negative regulator of g 99.7 1.7E-17 5.8E-22 176.2 14.3 195 191-423 164-383 (468)
48 2v1u_A Cell division control p 99.7 2.5E-16 8.7E-21 160.5 22.2 227 202-464 14-277 (387)
49 3bos_A Putative DNA replicatio 99.7 1.3E-16 4.5E-21 151.8 18.1 207 202-461 23-241 (242)
50 1um8_A ATP-dependent CLP prote 99.7 5.7E-17 2E-21 166.8 15.7 246 207-464 21-366 (376)
51 4fcw_A Chaperone protein CLPB; 99.7 7.9E-17 2.7E-21 160.5 14.6 208 206-431 16-284 (311)
52 1r6b_X CLPA protein; AAA+, N-t 99.7 9.2E-17 3.2E-21 179.9 16.3 228 201-464 180-434 (758)
53 2r44_A Uncharacterized protein 99.7 5.5E-16 1.9E-20 156.4 18.4 156 206-390 26-200 (331)
54 3pxi_A Negative regulator of g 99.7 7E-17 2.4E-21 181.0 12.0 195 191-423 164-383 (758)
55 1sxj_D Activator 1 41 kDa subu 99.7 8.3E-16 2.8E-20 155.5 18.1 216 196-464 26-264 (353)
56 1sxj_A Activator 1 95 kDa subu 99.7 1.9E-16 6.6E-21 170.0 14.1 199 196-409 28-244 (516)
57 1g8p_A Magnesium-chelatase 38 99.7 3.8E-16 1.3E-20 158.0 15.4 160 201-387 18-231 (350)
58 2qby_B CDC6 homolog 3, cell di 99.7 9.9E-16 3.4E-20 156.7 18.7 213 206-464 19-271 (384)
59 2p65_A Hypothetical protein PF 99.7 4.6E-17 1.6E-21 148.6 7.1 152 203-376 18-187 (187)
60 2chq_A Replication factor C sm 99.7 3.5E-16 1.2E-20 155.6 13.4 181 197-408 7-195 (319)
61 2qby_A CDC6 homolog 1, cell di 99.7 3.9E-15 1.3E-19 151.4 21.3 225 202-464 15-273 (386)
62 1sxj_B Activator 1 37 kDa subu 99.7 1.4E-15 4.9E-20 151.4 17.0 180 199-413 13-205 (323)
63 1qvr_A CLPB protein; coiled co 99.7 1E-16 3.5E-21 181.9 9.1 211 191-424 154-391 (854)
64 1in4_A RUVB, holliday junction 99.7 1.4E-14 4.8E-19 147.0 23.6 219 199-464 17-251 (334)
65 1iqp_A RFCS; clamp loader, ext 99.6 2.2E-15 7.5E-20 150.4 16.9 183 196-409 14-204 (327)
66 1fnn_A CDC6P, cell division co 99.6 1.1E-14 3.6E-19 148.9 21.4 225 202-466 12-277 (389)
67 3te6_A Regulatory protein SIR3 99.6 1.2E-15 4E-20 153.9 12.8 159 209-390 22-213 (318)
68 3pxi_A Negative regulator of g 99.6 1.3E-15 4.3E-20 170.8 14.4 204 207-430 491-729 (758)
69 1jr3_A DNA polymerase III subu 99.6 6.2E-15 2.1E-19 150.2 18.0 188 199-421 8-224 (373)
70 1r6b_X CLPA protein; AAA+, N-t 99.6 2.7E-15 9.4E-20 168.0 14.7 206 207-430 458-720 (758)
71 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 7.1E-15 2.4E-19 156.9 14.1 155 207-389 22-197 (500)
72 2bjv_A PSP operon transcriptio 99.6 2.1E-14 7.1E-19 140.3 13.0 158 204-388 3-194 (265)
73 1sxj_E Activator 1 40 kDa subu 99.5 2.3E-14 7.8E-19 145.4 12.9 181 197-410 4-230 (354)
74 1sxj_C Activator 1 40 kDa subu 99.5 2.9E-13 1E-17 137.2 21.0 160 196-390 14-184 (340)
75 1qvr_A CLPB protein; coiled co 99.5 2.7E-14 9.2E-19 162.1 14.7 207 206-430 557-824 (854)
76 1ojl_A Transcriptional regulat 99.5 7.6E-15 2.6E-19 147.2 7.9 195 207-435 2-230 (304)
77 3f9v_A Minichromosome maintena 99.5 3E-15 1E-19 163.3 2.2 166 207-391 295-493 (595)
78 3n70_A Transport activator; si 99.5 9.1E-14 3.1E-18 123.9 9.4 125 208-368 2-136 (145)
79 3co5_A Putative two-component 99.5 2.6E-14 9E-19 127.2 4.3 125 208-368 5-134 (143)
80 1a5t_A Delta prime, HOLB; zinc 99.4 5.6E-12 1.9E-16 127.8 17.9 168 211-413 6-201 (334)
81 1w5s_A Origin recognition comp 99.4 1E-11 3.6E-16 127.7 19.9 210 202-425 17-273 (412)
82 3k1j_A LON protease, ATP-depen 99.3 6.1E-12 2.1E-16 137.5 12.8 52 200-265 34-85 (604)
83 2gno_A DNA polymerase III, gam 99.3 2.7E-11 9.2E-16 121.5 14.4 142 211-388 1-152 (305)
84 3cmw_A Protein RECA, recombina 99.3 4.7E-12 1.6E-16 150.3 8.9 152 202-355 1015-1218(1706)
85 3vlf_B 26S protease regulatory 99.3 1E-11 3.5E-16 101.7 7.5 85 376-478 2-88 (88)
86 2krk_A 26S protease regulatory 99.2 1.9E-11 6.5E-16 99.6 5.7 78 371-466 7-84 (86)
87 3aji_B S6C, proteasome (prosom 99.2 2.5E-11 8.4E-16 98.1 5.5 81 376-474 2-82 (83)
88 3kw6_A 26S protease regulatory 99.1 7.1E-11 2.4E-15 94.2 7.0 75 373-465 1-75 (78)
89 3ec2_A DNA replication protein 99.1 1.9E-10 6.5E-15 105.4 7.4 100 201-311 4-112 (180)
90 1ny5_A Transcriptional regulat 99.0 6.3E-10 2.2E-14 115.0 10.9 215 206-461 136-385 (387)
91 4akg_A Glutathione S-transfera 99.0 2.3E-10 7.9E-15 141.3 7.9 139 239-389 1266-1432(2695)
92 2kjq_A DNAA-related protein; s 99.0 8.3E-10 2.8E-14 99.0 8.0 107 239-374 35-147 (149)
93 3dzd_A Transcriptional regulat 98.9 4.8E-09 1.6E-13 107.7 13.4 198 206-438 128-359 (368)
94 2fna_A Conserved hypothetical 98.9 9.2E-09 3.2E-13 103.0 13.4 188 201-419 7-251 (357)
95 2qen_A Walker-type ATPase; unk 98.8 2.6E-08 8.9E-13 99.6 14.3 191 202-419 7-247 (350)
96 3f8t_A Predicted ATPase involv 98.8 2.8E-09 9.6E-14 111.7 5.4 147 209-379 215-385 (506)
97 2dzn_B 26S protease regulatory 98.8 1.8E-09 6E-14 87.0 2.8 75 378-470 1-76 (82)
98 2w58_A DNAI, primosome compone 98.8 2.8E-09 9.5E-14 99.2 4.4 100 203-312 21-128 (202)
99 2r2a_A Uncharacterized protein 98.7 7.4E-09 2.5E-13 97.4 5.7 126 241-377 6-155 (199)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.2E-08 4.2E-13 102.3 3.9 119 238-361 121-241 (331)
101 2qgz_A Helicase loader, putati 98.6 3.3E-08 1.1E-12 99.0 5.0 97 204-311 121-226 (308)
102 1tue_A Replication protein E1; 98.5 8.3E-08 2.8E-12 90.3 6.8 110 238-374 56-178 (212)
103 4akg_A Glutathione S-transfera 98.5 3.2E-07 1.1E-11 113.7 13.7 132 240-385 645-790 (2695)
104 3cmu_A Protein RECA, recombina 98.3 1.2E-06 4.3E-11 105.5 9.4 117 237-355 1424-1563(2050)
105 3vkg_A Dynein heavy chain, cyt 98.2 2E-06 6.9E-11 107.4 9.3 139 239-388 1303-1469(3245)
106 1u0j_A DNA replication protein 98.2 2.2E-06 7.5E-11 83.8 6.9 29 238-266 102-130 (267)
107 1ye8_A Protein THEP1, hypothet 98.2 1.3E-05 4.5E-10 73.6 11.7 27 242-268 2-28 (178)
108 3vkg_A Dynein heavy chain, cyt 98.0 2.1E-05 7.1E-10 98.6 13.7 136 241-386 605-751 (3245)
109 1jr3_D DNA polymerase III, del 98.0 3.5E-05 1.2E-09 77.5 12.5 145 239-408 17-176 (343)
110 1svm_A Large T antigen; AAA+ f 98.0 1.6E-06 5.6E-11 89.1 2.4 115 237-373 166-283 (377)
111 1z6t_A APAF-1, apoptotic prote 97.9 0.00018 6.3E-09 77.4 16.8 174 204-417 121-327 (591)
112 2c9o_A RUVB-like 1; hexameric 97.8 6.3E-05 2.1E-09 79.0 10.4 129 300-464 296-438 (456)
113 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.00021 7.2E-09 66.6 11.6 37 237-273 20-59 (235)
114 2cvh_A DNA repair and recombin 97.7 0.00019 6.3E-09 66.7 11.1 39 237-275 17-55 (220)
115 3sfz_A APAF-1, apoptotic pepti 97.7 0.00047 1.6E-08 80.0 16.9 177 202-416 119-326 (1249)
116 2z43_A DNA repair and recombin 97.7 9E-05 3.1E-09 74.3 9.3 78 237-314 104-218 (324)
117 3hr8_A Protein RECA; alpha and 97.7 0.00012 3.9E-09 74.7 9.9 77 237-313 58-153 (356)
118 1n0w_A DNA repair protein RAD5 97.7 6.3E-05 2.1E-09 71.1 7.4 77 237-313 21-133 (243)
119 1v5w_A DMC1, meiotic recombina 97.7 0.00019 6.5E-09 72.6 10.8 79 236-314 118-234 (343)
120 1xp8_A RECA protein, recombina 97.6 0.00017 5.8E-09 73.8 10.4 77 237-313 71-166 (366)
121 4a74_A DNA repair and recombin 97.6 0.00016 5.6E-09 67.5 9.3 28 237-264 22-49 (231)
122 2zr9_A Protein RECA, recombina 97.6 0.00016 5.6E-09 73.4 9.5 77 237-313 58-153 (349)
123 1qhx_A CPT, protein (chloramph 97.5 5.8E-05 2E-09 68.0 4.8 36 241-276 4-39 (178)
124 2orw_A Thymidine kinase; TMTK, 97.5 6.5E-05 2.2E-09 69.2 4.9 31 241-271 4-37 (184)
125 2ehv_A Hypothetical protein PH 97.5 0.0014 4.9E-08 61.8 14.0 25 237-261 27-51 (251)
126 1u94_A RECA protein, recombina 97.5 0.00028 9.6E-09 71.8 9.2 77 237-313 60-155 (356)
127 2b8t_A Thymidine kinase; deoxy 97.4 0.00021 7.1E-09 68.0 7.3 71 240-311 12-101 (223)
128 3trf_A Shikimate kinase, SK; a 97.4 8E-05 2.7E-09 67.6 4.1 32 240-271 5-36 (185)
129 3lda_A DNA repair protein RAD5 97.4 0.00029 9.8E-09 72.9 8.2 79 236-314 174-288 (400)
130 3cmu_A Protein RECA, recombina 97.4 0.00038 1.3E-08 84.3 10.1 79 236-314 1077-1174(2050)
131 3upu_A ATP-dependent DNA helic 97.4 0.00091 3.1E-08 70.2 12.0 55 197-264 14-69 (459)
132 2i1q_A DNA repair and recombin 97.4 0.00038 1.3E-08 69.4 8.3 79 236-314 94-219 (322)
133 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4E-09 67.8 4.2 34 238-271 23-56 (199)
134 1pzn_A RAD51, DNA repair and r 97.3 0.00056 1.9E-08 69.3 9.5 39 237-275 128-175 (349)
135 2a5y_B CED-4; apoptosis; HET: 97.3 0.0023 7.9E-08 68.6 14.6 169 210-416 131-335 (549)
136 2dr3_A UPF0273 protein PH0284; 97.3 0.0017 5.7E-08 61.2 12.0 37 237-273 20-59 (247)
137 2iut_A DNA translocase FTSK; n 97.3 0.0022 7.5E-08 68.9 13.9 74 301-385 345-420 (574)
138 2p5t_B PEZT; postsegregational 97.3 0.00094 3.2E-08 64.2 10.0 39 238-276 30-68 (253)
139 3dm5_A SRP54, signal recogniti 97.3 0.0054 1.9E-07 64.0 16.1 98 212-309 72-192 (443)
140 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.1E-09 63.6 4.3 31 242-272 3-33 (173)
141 3iij_A Coilin-interacting nucl 97.2 0.0002 6.8E-09 64.8 4.2 32 240-271 11-42 (180)
142 2rhm_A Putative kinase; P-loop 97.2 0.00028 9.6E-09 64.1 5.2 33 239-271 4-36 (193)
143 1vma_A Cell division protein F 97.2 0.002 6.8E-08 64.2 11.2 72 238-309 102-196 (306)
144 2iyv_A Shikimate kinase, SK; t 97.2 0.00021 7.1E-09 64.8 3.8 30 242-271 4-33 (184)
145 1zuh_A Shikimate kinase; alpha 97.1 0.00025 8.4E-09 63.4 3.9 31 241-271 8-38 (168)
146 1via_A Shikimate kinase; struc 97.1 0.00029 9.9E-09 63.5 4.4 29 242-270 6-34 (175)
147 1gvn_B Zeta; postsegregational 97.1 0.00058 2E-08 67.2 6.7 39 239-277 32-70 (287)
148 1kag_A SKI, shikimate kinase I 97.1 0.00036 1.2E-08 62.4 4.7 30 241-270 5-34 (173)
149 1g5t_A COB(I)alamin adenosyltr 97.1 0.004 1.4E-07 57.9 11.8 114 241-370 29-175 (196)
150 3io5_A Recombination and repai 97.1 0.0011 3.8E-08 66.3 8.5 76 237-313 26-125 (333)
151 1y63_A LMAJ004144AAA protein; 97.1 0.00027 9.1E-09 64.5 3.7 32 240-271 10-42 (184)
152 1tev_A UMP-CMP kinase; ploop, 97.1 0.00031 1.1E-08 63.7 4.1 31 240-270 3-33 (196)
153 2cdn_A Adenylate kinase; phosp 97.1 0.00034 1.2E-08 64.5 4.3 32 240-271 20-51 (201)
154 1zp6_A Hypothetical protein AT 97.1 0.00033 1.1E-08 63.7 4.1 39 238-276 7-45 (191)
155 2r8r_A Sensor protein; KDPD, P 97.1 0.0012 4.3E-08 62.7 8.2 33 241-273 7-42 (228)
156 3cmw_A Protein RECA, recombina 97.1 0.00078 2.7E-08 80.6 8.2 78 236-313 728-824 (1706)
157 2c95_A Adenylate kinase 1; tra 97.1 0.00035 1.2E-08 63.6 4.0 33 239-271 8-40 (196)
158 2zts_A Putative uncharacterize 97.1 0.0055 1.9E-07 57.6 12.6 79 236-314 26-150 (251)
159 3e1s_A Exodeoxyribonuclease V, 97.1 0.00058 2E-08 73.9 6.4 31 241-271 205-238 (574)
160 2ius_A DNA translocase FTSK; n 97.0 0.008 2.7E-07 63.9 15.0 74 302-386 300-375 (512)
161 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0013 4.6E-08 63.4 8.1 38 240-277 4-44 (260)
162 2ze6_A Isopentenyl transferase 97.0 0.0004 1.4E-08 67.1 4.3 32 242-273 3-34 (253)
163 3lw7_A Adenylate kinase relate 97.0 0.00032 1.1E-08 62.1 3.4 29 242-271 3-31 (179)
164 1aky_A Adenylate kinase; ATP:A 97.0 0.00052 1.8E-08 64.2 4.9 32 240-271 4-35 (220)
165 3crm_A TRNA delta(2)-isopenten 97.0 0.00038 1.3E-08 69.9 4.1 36 240-275 5-40 (323)
166 3cm0_A Adenylate kinase; ATP-b 97.0 0.00047 1.6E-08 62.4 4.2 31 240-270 4-34 (186)
167 1e6c_A Shikimate kinase; phosp 97.0 0.00051 1.8E-08 61.3 4.4 29 242-270 4-32 (173)
168 4gp7_A Metallophosphoesterase; 97.0 0.0032 1.1E-07 56.7 9.6 21 239-259 8-28 (171)
169 1ly1_A Polynucleotide kinase; 96.9 0.00048 1.6E-08 61.7 3.8 27 241-267 3-30 (181)
170 3tlx_A Adenylate kinase 2; str 96.9 0.00055 1.9E-08 65.6 4.3 33 239-271 28-60 (243)
171 2bwj_A Adenylate kinase 5; pho 96.9 0.0005 1.7E-08 62.8 3.8 32 240-271 12-43 (199)
172 2vli_A Antibiotic resistance p 96.9 0.00044 1.5E-08 62.3 3.4 29 241-269 6-34 (183)
173 1zd8_A GTP:AMP phosphotransfer 96.9 0.00047 1.6E-08 65.0 3.7 32 240-271 7-38 (227)
174 3dl0_A Adenylate kinase; phosp 96.9 0.00047 1.6E-08 64.2 3.6 30 242-271 2-31 (216)
175 3t61_A Gluconokinase; PSI-biol 96.9 0.00071 2.4E-08 62.4 4.8 32 240-271 18-49 (202)
176 1qf9_A UMP/CMP kinase, protein 96.9 0.0008 2.7E-08 60.8 5.1 32 240-271 6-37 (194)
177 3fb4_A Adenylate kinase; psych 96.9 0.0005 1.7E-08 64.0 3.7 30 242-271 2-31 (216)
178 1kht_A Adenylate kinase; phosp 96.9 0.00057 2E-08 61.8 4.0 25 241-265 4-28 (192)
179 2pt5_A Shikimate kinase, SK; a 96.9 0.00053 1.8E-08 61.0 3.7 30 242-271 2-31 (168)
180 3kl4_A SRP54, signal recogniti 96.9 0.0068 2.3E-07 63.1 12.6 72 239-310 96-190 (433)
181 1ukz_A Uridylate kinase; trans 96.9 0.00064 2.2E-08 62.6 4.2 32 240-271 15-46 (203)
182 1ak2_A Adenylate kinase isoenz 96.9 0.00081 2.8E-08 63.7 5.1 32 240-271 16-47 (233)
183 1knq_A Gluconate kinase; ALFA/ 96.9 0.0009 3.1E-08 60.0 5.1 31 240-270 8-38 (175)
184 3umf_A Adenylate kinase; rossm 96.9 0.00076 2.6E-08 63.8 4.6 39 237-277 26-64 (217)
185 4eun_A Thermoresistant glucoki 96.8 0.001 3.5E-08 61.4 4.9 31 239-269 28-58 (200)
186 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00056 1.9E-08 69.5 3.3 53 210-270 2-54 (359)
187 2bbw_A Adenylate kinase 4, AK4 96.8 0.0009 3.1E-08 63.8 4.7 33 238-270 25-57 (246)
188 3jvv_A Twitching mobility prot 96.8 0.0016 5.3E-08 66.3 6.5 71 239-309 122-206 (356)
189 1zak_A Adenylate kinase; ATP:A 96.8 0.00077 2.6E-08 63.2 3.8 31 240-270 5-35 (222)
190 3be4_A Adenylate kinase; malar 96.8 0.00092 3.1E-08 62.6 4.3 31 241-271 6-36 (217)
191 3sr0_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 62.4 4.4 34 242-277 2-35 (206)
192 1nlf_A Regulatory protein REPA 96.7 0.01 3.5E-07 57.5 11.7 28 237-264 27-54 (279)
193 2dl1_A Spartin; SPG20, MIT, st 96.7 0.00029 1E-08 59.5 0.4 76 14-90 12-96 (116)
194 2pez_A Bifunctional 3'-phospho 96.7 0.0017 5.8E-08 58.6 5.5 37 239-275 4-43 (179)
195 3foz_A TRNA delta(2)-isopenten 96.7 0.00086 2.9E-08 66.9 3.7 37 240-276 10-46 (316)
196 2pbr_A DTMP kinase, thymidylat 96.7 0.0014 4.8E-08 59.3 4.9 31 242-272 2-35 (195)
197 2eyu_A Twitching motility prot 96.7 0.00091 3.1E-08 65.0 3.7 71 238-309 23-108 (261)
198 1e4v_A Adenylate kinase; trans 96.7 0.0012 4.1E-08 61.5 4.4 30 242-271 2-31 (214)
199 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 60.1 4.6 33 240-272 4-37 (204)
200 2px0_A Flagellar biosynthesis 96.6 0.011 3.6E-07 58.5 11.3 61 213-274 79-143 (296)
201 3uie_A Adenylyl-sulfate kinase 96.6 0.0016 5.4E-08 60.0 5.0 39 238-276 23-64 (200)
202 2r6a_A DNAB helicase, replicat 96.6 0.009 3.1E-07 62.5 11.3 37 237-273 200-240 (454)
203 1vt4_I APAF-1 related killer D 96.6 0.019 6.4E-07 65.9 14.4 44 209-263 130-173 (1221)
204 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.4E-08 60.1 4.1 29 242-270 2-30 (205)
205 1cke_A CK, MSSA, protein (cyti 96.6 0.0018 6.1E-08 60.5 5.0 30 241-270 6-35 (227)
206 1ex7_A Guanylate kinase; subst 96.6 0.0018 6E-08 59.8 4.7 25 241-265 2-26 (186)
207 2xb4_A Adenylate kinase; ATP-b 96.6 0.0015 5.1E-08 61.5 4.4 30 242-271 2-31 (223)
208 1nks_A Adenylate kinase; therm 96.6 0.00093 3.2E-08 60.4 2.8 31 242-272 3-36 (194)
209 2z0h_A DTMP kinase, thymidylat 96.5 0.0019 6.6E-08 58.7 4.8 30 243-272 3-35 (197)
210 2q6t_A DNAB replication FORK h 96.5 0.013 4.3E-07 61.2 11.6 38 236-273 196-237 (444)
211 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.5E-08 60.5 3.3 30 242-272 3-32 (204)
212 2plr_A DTMP kinase, probable t 96.4 0.002 6.9E-08 59.1 4.3 28 240-267 4-31 (213)
213 2fz4_A DNA repair protein RAD2 96.4 0.006 2.1E-07 58.0 7.6 32 242-273 110-141 (237)
214 3ake_A Cytidylate kinase; CMP 96.4 0.0023 7.9E-08 58.7 4.5 31 242-272 4-34 (208)
215 3r20_A Cytidylate kinase; stru 96.4 0.0027 9.1E-08 60.7 4.8 31 240-270 9-39 (233)
216 2wwf_A Thymidilate kinase, put 96.3 0.0011 3.7E-08 61.2 1.8 28 240-267 10-37 (212)
217 2ewv_A Twitching motility prot 96.3 0.0036 1.2E-07 63.9 5.8 72 238-309 134-219 (372)
218 1uf9_A TT1252 protein; P-loop, 96.3 0.0031 1E-07 57.6 4.7 32 239-271 7-38 (203)
219 3nwj_A ATSK2; P loop, shikimat 96.3 0.0028 9.5E-08 61.2 4.6 32 240-271 48-79 (250)
220 1nn5_A Similar to deoxythymidy 96.3 0.0013 4.5E-08 60.7 2.0 27 239-265 8-34 (215)
221 1jjv_A Dephospho-COA kinase; P 96.3 0.0025 8.6E-08 58.7 3.8 28 242-270 4-31 (206)
222 3b6e_A Interferon-induced heli 96.3 0.023 7.7E-07 52.0 10.3 24 241-264 49-72 (216)
223 2qor_A Guanylate kinase; phosp 96.2 0.0026 9E-08 58.7 3.9 28 238-265 10-37 (204)
224 2yvu_A Probable adenylyl-sulfa 96.2 0.0046 1.6E-07 56.0 5.4 36 239-274 12-50 (186)
225 2grj_A Dephospho-COA kinase; T 96.2 0.0025 8.6E-08 59.0 3.6 30 242-271 14-43 (192)
226 1uj2_A Uridine-cytidine kinase 96.2 0.0046 1.6E-07 59.2 5.5 38 240-277 22-67 (252)
227 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.9E-08 64.1 3.8 35 240-274 40-74 (339)
228 1w4r_A Thymidine kinase; type 96.2 0.014 4.7E-07 54.2 8.3 34 240-273 20-56 (195)
229 4e22_A Cytidylate kinase; P-lo 96.2 0.0042 1.4E-07 59.7 5.0 31 240-270 27-57 (252)
230 1vht_A Dephospho-COA kinase; s 96.1 0.0046 1.6E-07 57.5 5.0 31 240-271 4-34 (218)
231 1q57_A DNA primase/helicase; d 96.1 0.058 2E-06 56.9 14.0 79 195-273 188-279 (503)
232 3bh0_A DNAB-like replicative h 96.1 0.038 1.3E-06 54.8 11.7 37 237-273 65-104 (315)
233 1q3t_A Cytidylate kinase; nucl 96.1 0.0052 1.8E-07 58.1 5.1 32 239-270 15-46 (236)
234 2qt1_A Nicotinamide riboside k 96.1 0.003 1E-07 58.3 3.3 33 238-270 19-52 (207)
235 3zvl_A Bifunctional polynucleo 96.1 0.0072 2.5E-07 62.6 6.5 32 239-270 257-288 (416)
236 1zu4_A FTSY; GTPase, signal re 96.1 0.041 1.4E-06 54.9 11.7 37 237-273 102-141 (320)
237 1m7g_A Adenylylsulfate kinase; 96.0 0.0044 1.5E-07 57.5 4.2 38 239-276 24-65 (211)
238 2j41_A Guanylate kinase; GMP, 96.0 0.0038 1.3E-07 57.2 3.6 26 239-264 5-30 (207)
239 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0037 1.3E-07 62.8 3.8 71 239-309 170-250 (330)
240 2h92_A Cytidylate kinase; ross 96.0 0.0052 1.8E-07 57.0 4.5 31 241-271 4-34 (219)
241 2j37_W Signal recognition part 95.9 0.097 3.3E-06 55.5 14.5 35 239-273 100-137 (504)
242 3eab_A Spastin; spastin, MIT, 95.9 0.0012 4.3E-08 53.0 -0.1 70 15-84 7-85 (89)
243 1ltq_A Polynucleotide kinase; 95.9 0.0053 1.8E-07 60.0 4.2 29 241-269 3-32 (301)
244 3thx_B DNA mismatch repair pro 95.8 0.034 1.2E-06 63.1 11.2 25 238-262 671-695 (918)
245 3tau_A Guanylate kinase, GMP k 95.8 0.0049 1.7E-07 57.2 3.6 27 239-265 7-33 (208)
246 1kgd_A CASK, peripheral plasma 95.8 0.0055 1.9E-07 55.5 3.9 26 240-265 5-30 (180)
247 3exa_A TRNA delta(2)-isopenten 95.8 0.0059 2E-07 60.9 4.3 33 241-273 4-36 (322)
248 1xx6_A Thymidine kinase; NESG, 95.8 0.013 4.3E-07 54.2 6.3 33 240-272 8-43 (191)
249 2yhs_A FTSY, cell division pro 95.8 0.073 2.5E-06 56.2 12.8 28 237-264 290-317 (503)
250 2bdt_A BH3686; alpha-beta prot 95.8 0.0059 2E-07 55.3 4.0 31 242-273 4-34 (189)
251 1rz3_A Hypothetical protein rb 95.8 0.022 7.5E-07 52.4 7.9 35 239-273 21-58 (201)
252 2f6r_A COA synthase, bifunctio 95.8 0.0073 2.5E-07 59.1 4.8 31 240-271 75-105 (281)
253 3d3q_A TRNA delta(2)-isopenten 95.8 0.0052 1.8E-07 62.0 3.7 33 241-273 8-40 (340)
254 1t6n_A Probable ATP-dependent 95.8 0.064 2.2E-06 49.5 11.0 60 204-264 14-75 (220)
255 1qde_A EIF4A, translation init 95.7 0.068 2.3E-06 49.3 11.2 58 204-263 14-75 (224)
256 4b3f_X DNA-binding protein smu 95.7 0.044 1.5E-06 59.8 11.1 48 212-273 191-241 (646)
257 3tr0_A Guanylate kinase, GMP k 95.7 0.0069 2.4E-07 55.4 4.0 27 239-265 6-32 (205)
258 2xxa_A Signal recognition part 95.7 0.19 6.4E-06 52.3 15.3 71 238-308 98-192 (433)
259 2axn_A 6-phosphofructo-2-kinas 95.7 0.023 7.8E-07 60.6 8.5 38 239-276 34-74 (520)
260 1j8m_F SRP54, signal recogniti 95.7 0.11 3.8E-06 51.1 13.0 69 240-308 98-189 (297)
261 1p9r_A General secretion pathw 95.7 0.031 1.1E-06 57.9 9.3 49 204-265 144-192 (418)
262 2qmh_A HPR kinase/phosphorylas 95.7 0.0053 1.8E-07 57.3 3.1 34 239-273 33-66 (205)
263 2gxq_A Heat resistant RNA depe 95.6 0.028 9.6E-07 51.2 8.0 23 241-263 39-62 (207)
264 3e70_C DPA, signal recognition 95.6 0.056 1.9E-06 54.1 10.8 27 238-264 127-153 (328)
265 3fdi_A Uncharacterized protein 95.6 0.0077 2.6E-07 55.9 4.1 29 242-270 8-36 (201)
266 4a1f_A DNAB helicase, replicat 95.6 0.042 1.4E-06 55.3 9.8 37 237-273 43-82 (338)
267 3asz_A Uridine kinase; cytidin 95.6 0.0081 2.8E-07 55.4 4.1 27 239-265 5-31 (211)
268 3eph_A TRNA isopentenyltransfe 95.6 0.0081 2.8E-07 61.9 4.4 33 240-272 2-34 (409)
269 1lvg_A Guanylate kinase, GMP k 95.5 0.0072 2.5E-07 55.7 3.4 27 239-265 3-29 (198)
270 3c8u_A Fructokinase; YP_612366 95.5 0.0081 2.8E-07 55.6 3.6 28 238-265 20-47 (208)
271 3thx_A DNA mismatch repair pro 95.4 0.053 1.8E-06 61.7 10.5 23 240-262 662-684 (934)
272 1tf7_A KAIC; homohexamer, hexa 95.4 0.051 1.7E-06 57.8 9.9 76 237-312 278-384 (525)
273 3a00_A Guanylate kinase, GMP k 95.3 0.0098 3.3E-07 54.0 3.5 25 241-265 2-26 (186)
274 3bgw_A DNAB-like replicative h 95.3 0.085 2.9E-06 55.0 11.0 38 236-273 193-233 (444)
275 2oap_1 GSPE-2, type II secreti 95.2 0.012 4.2E-07 62.6 4.4 70 239-308 259-342 (511)
276 1g41_A Heat shock protein HSLU 95.2 0.0013 4.5E-08 68.8 -3.1 58 324-384 127-188 (444)
277 3b9q_A Chloroplast SRP recepto 95.1 0.03 1E-06 55.4 6.7 52 213-264 70-124 (302)
278 1htw_A HI0065; nucleotide-bind 95.1 0.016 5.5E-07 51.8 4.3 27 238-264 31-57 (158)
279 1ls1_A Signal recognition part 95.1 0.061 2.1E-06 52.9 8.8 70 239-308 97-189 (295)
280 1gtv_A TMK, thymidylate kinase 95.1 0.0063 2.2E-07 56.0 1.5 24 242-265 2-25 (214)
281 3ney_A 55 kDa erythrocyte memb 95.1 0.014 4.7E-07 54.3 3.8 27 239-265 18-44 (197)
282 1x6v_B Bifunctional 3'-phospho 95.0 0.019 6.5E-07 62.5 5.3 38 239-276 51-91 (630)
283 2v3c_C SRP54, signal recogniti 95.0 0.1 3.5E-06 54.3 10.7 36 239-274 98-136 (432)
284 4eaq_A DTMP kinase, thymidylat 95.0 0.019 6.5E-07 54.3 4.7 32 239-270 25-58 (229)
285 1znw_A Guanylate kinase, GMP k 95.0 0.015 5.2E-07 53.7 3.9 28 238-265 18-45 (207)
286 1z6g_A Guanylate kinase; struc 95.0 0.014 4.8E-07 54.6 3.7 27 238-264 21-47 (218)
287 1vec_A ATP-dependent RNA helic 94.9 0.095 3.2E-06 47.6 9.2 18 241-258 41-58 (206)
288 1c9k_A COBU, adenosylcobinamid 94.9 0.016 5.4E-07 53.1 3.6 32 243-275 2-33 (180)
289 2j9r_A Thymidine kinase; TK1, 94.9 0.037 1.3E-06 52.1 6.1 32 241-272 29-63 (214)
290 3hdt_A Putative kinase; struct 94.9 0.018 6E-07 54.5 4.0 30 241-270 15-44 (223)
291 3gmt_A Adenylate kinase; ssgci 94.8 0.02 6.8E-07 54.6 4.2 30 242-271 10-39 (230)
292 3bor_A Human initiation factor 94.8 0.097 3.3E-06 49.1 9.1 19 240-258 67-85 (237)
293 2ffh_A Protein (FFH); SRP54, s 94.8 0.15 5.2E-06 52.8 11.3 70 239-308 97-189 (425)
294 1s96_A Guanylate kinase, GMP k 94.8 0.018 6.2E-07 54.2 3.9 28 238-265 14-41 (219)
295 2og2_A Putative signal recogni 94.8 0.035 1.2E-06 56.3 6.3 52 213-264 127-181 (359)
296 2jeo_A Uridine-cytidine kinase 94.8 0.021 7.1E-07 54.3 4.3 30 238-267 23-52 (245)
297 1tf7_A KAIC; homohexamer, hexa 94.8 0.079 2.7E-06 56.3 9.3 36 238-273 37-76 (525)
298 1sky_E F1-ATPase, F1-ATP synth 94.8 0.063 2.2E-06 56.3 8.2 24 241-264 152-175 (473)
299 2xau_A PRE-mRNA-splicing facto 94.7 0.086 2.9E-06 58.9 9.8 60 204-263 72-132 (773)
300 2v9p_A Replication protein E1; 94.7 0.02 6.8E-07 56.8 4.1 29 237-265 123-151 (305)
301 1rj9_A FTSY, signal recognitio 94.6 0.038 1.3E-06 54.7 6.0 26 239-264 101-126 (304)
302 3iuy_A Probable ATP-dependent 94.6 0.13 4.5E-06 47.7 9.3 19 240-258 57-75 (228)
303 1cr0_A DNA primase/helicase; R 94.6 0.022 7.6E-07 55.5 4.0 35 238-272 33-71 (296)
304 1wb9_A DNA mismatch repair pro 94.5 0.12 4.1E-06 57.9 10.4 25 239-263 606-630 (800)
305 1odf_A YGR205W, hypothetical 3 94.5 0.043 1.5E-06 54.0 5.9 27 239-265 30-56 (290)
306 2ged_A SR-beta, signal recogni 94.4 0.046 1.6E-06 49.0 5.5 26 239-264 47-72 (193)
307 3p32_A Probable GTPase RV1496/ 94.4 0.086 2.9E-06 53.1 8.1 34 239-272 78-114 (355)
308 1bif_A 6-phosphofructo-2-kinas 94.4 0.086 2.9E-06 55.2 8.3 27 239-265 38-64 (469)
309 1a7j_A Phosphoribulokinase; tr 94.3 0.018 6.3E-07 56.5 2.8 36 241-276 6-44 (290)
310 3fe2_A Probable ATP-dependent 94.2 0.12 4.2E-06 48.5 8.3 19 240-258 66-84 (242)
311 1m8p_A Sulfate adenylyltransfe 94.2 0.028 9.5E-07 60.7 4.2 37 239-275 395-435 (573)
312 2gza_A Type IV secretion syste 94.2 0.046 1.6E-06 55.4 5.5 71 239-309 174-262 (361)
313 2i3b_A HCR-ntpase, human cance 94.2 0.027 9.2E-07 51.8 3.5 23 242-264 3-25 (189)
314 2ocp_A DGK, deoxyguanosine kin 94.1 0.038 1.3E-06 52.2 4.5 26 240-265 2-27 (241)
315 3lnc_A Guanylate kinase, GMP k 94.1 0.016 5.3E-07 54.5 1.8 27 238-264 25-52 (231)
316 3oiy_A Reverse gyrase helicase 94.1 0.1 3.5E-06 53.0 8.0 22 241-262 37-58 (414)
317 3tqf_A HPR(Ser) kinase; transf 94.1 0.031 1.1E-06 50.9 3.6 25 239-263 15-39 (181)
318 2qm8_A GTPase/ATPase; G protei 94.0 0.15 5.2E-06 51.0 8.9 26 239-264 54-79 (337)
319 3aez_A Pantothenate kinase; tr 94.0 0.038 1.3E-06 54.9 4.3 27 238-264 88-114 (312)
320 3dkp_A Probable ATP-dependent 94.0 0.19 6.3E-06 47.2 9.0 17 241-257 67-83 (245)
321 1xti_A Probable ATP-dependent 93.9 0.44 1.5E-05 47.4 12.2 23 240-262 45-67 (391)
322 1xjc_A MOBB protein homolog; s 93.9 0.063 2.2E-06 48.5 5.2 32 241-272 5-39 (169)
323 3cr8_A Sulfate adenylyltranfer 93.9 0.046 1.6E-06 58.7 5.0 39 238-276 367-409 (552)
324 1p5z_B DCK, deoxycytidine kina 93.8 0.018 6.3E-07 55.2 1.7 27 239-265 23-49 (263)
325 1sq5_A Pantothenate kinase; P- 93.8 0.04 1.4E-06 54.4 4.0 27 239-265 79-105 (308)
326 3ice_A Transcription terminati 93.7 0.12 4.2E-06 52.9 7.5 27 238-264 172-198 (422)
327 3tif_A Uncharacterized ABC tra 93.6 0.033 1.1E-06 52.9 2.9 29 237-265 28-56 (235)
328 4edh_A DTMP kinase, thymidylat 93.6 0.079 2.7E-06 49.6 5.5 32 240-271 6-40 (213)
329 3lxx_A GTPase IMAP family memb 93.5 0.13 4.5E-06 48.2 7.1 24 240-263 29-52 (239)
330 2cbz_A Multidrug resistance-as 93.5 0.035 1.2E-06 52.9 2.9 28 237-264 28-55 (237)
331 2gk6_A Regulator of nonsense t 93.5 0.063 2.1E-06 58.4 5.3 23 242-264 197-219 (624)
332 1ewq_A DNA mismatch repair pro 93.5 0.25 8.5E-06 55.1 10.2 24 240-263 576-599 (765)
333 3k53_A Ferrous iron transport 93.4 0.093 3.2E-06 50.5 5.9 23 241-263 4-26 (271)
334 4f4c_A Multidrug resistance pr 93.4 0.15 5.2E-06 60.2 8.8 28 237-264 441-468 (1321)
335 3tbk_A RIG-I helicase domain; 93.4 0.41 1.4E-05 49.9 11.3 24 241-264 20-43 (555)
336 3kta_A Chromosome segregation 93.3 0.048 1.6E-06 48.8 3.4 24 242-265 28-51 (182)
337 3dz8_A RAS-related protein RAB 93.3 0.27 9.3E-06 43.9 8.6 24 241-264 24-47 (191)
338 2pcj_A ABC transporter, lipopr 93.3 0.032 1.1E-06 52.6 2.3 27 238-264 28-54 (224)
339 1np6_A Molybdopterin-guanine d 93.3 0.059 2E-06 48.9 3.9 24 241-264 7-30 (174)
340 3tqc_A Pantothenate kinase; bi 93.3 0.06 2E-06 53.8 4.3 27 239-265 91-117 (321)
341 3vkw_A Replicase large subunit 93.3 0.048 1.6E-06 56.9 3.7 25 239-263 160-184 (446)
342 3lxw_A GTPase IMAP family memb 93.2 0.59 2E-05 44.2 11.2 24 240-263 21-44 (247)
343 1mv5_A LMRA, multidrug resista 93.2 0.042 1.4E-06 52.4 3.0 28 237-264 25-52 (243)
344 2p67_A LAO/AO transport system 93.2 0.26 8.8E-06 49.3 9.0 26 239-264 55-80 (341)
345 3pey_A ATP-dependent RNA helic 93.1 0.24 8.1E-06 49.2 8.6 22 240-261 44-65 (395)
346 1b0u_A Histidine permease; ABC 93.1 0.043 1.5E-06 53.0 2.9 29 237-265 29-57 (262)
347 2onk_A Molybdate/tungstate ABC 93.1 0.049 1.7E-06 52.0 3.2 27 237-264 22-48 (240)
348 3tmk_A Thymidylate kinase; pho 93.0 0.11 3.7E-06 48.9 5.5 30 240-269 5-34 (216)
349 2dyk_A GTP-binding protein; GT 93.0 0.062 2.1E-06 46.2 3.6 22 242-263 3-24 (161)
350 1nrj_B SR-beta, signal recogni 93.0 0.066 2.3E-06 49.1 3.9 25 240-264 12-36 (218)
351 2f9l_A RAB11B, member RAS onco 92.9 0.055 1.9E-06 49.1 3.3 23 241-263 6-28 (199)
352 1oix_A RAS-related protein RAB 92.9 0.053 1.8E-06 49.0 3.1 23 242-264 31-53 (191)
353 2zu0_C Probable ATP-dependent 92.9 0.056 1.9E-06 52.4 3.4 27 237-263 43-69 (267)
354 2ghi_A Transport protein; mult 92.9 0.048 1.7E-06 52.6 2.9 28 237-264 43-70 (260)
355 2wsm_A Hydrogenase expression/ 92.9 0.084 2.9E-06 48.5 4.5 26 240-265 30-55 (221)
356 3lv8_A DTMP kinase, thymidylat 92.9 0.066 2.3E-06 51.0 3.8 25 240-264 27-51 (236)
357 1g8f_A Sulfate adenylyltransfe 92.8 0.056 1.9E-06 57.4 3.6 27 240-266 395-421 (511)
358 2ixe_A Antigen peptide transpo 92.8 0.051 1.7E-06 52.8 2.9 28 237-264 42-69 (271)
359 2d2e_A SUFC protein; ABC-ATPas 92.8 0.052 1.8E-06 52.0 2.9 26 238-263 27-52 (250)
360 2zj8_A DNA helicase, putative 92.8 0.3 1E-05 53.7 9.5 19 239-257 38-56 (720)
361 2j0s_A ATP-dependent RNA helic 92.8 0.19 6.5E-06 50.7 7.3 22 240-261 74-95 (410)
362 3b85_A Phosphate starvation-in 92.7 0.043 1.5E-06 51.2 2.2 23 241-263 23-45 (208)
363 2olj_A Amino acid ABC transpor 92.7 0.053 1.8E-06 52.6 2.9 29 237-265 47-75 (263)
364 2pze_A Cystic fibrosis transme 92.7 0.045 1.5E-06 51.7 2.4 27 238-264 32-58 (229)
365 1g6h_A High-affinity branched- 92.7 0.045 1.6E-06 52.7 2.4 27 238-264 31-57 (257)
366 2gks_A Bifunctional SAT/APS ki 92.7 0.22 7.6E-06 53.3 8.0 37 240-276 372-411 (546)
367 2f1r_A Molybdopterin-guanine d 92.7 0.049 1.7E-06 49.3 2.4 24 242-265 4-27 (171)
368 3fvq_A Fe(3+) IONS import ATP- 92.6 0.06 2E-06 54.6 3.3 27 238-264 28-54 (359)
369 4i1u_A Dephospho-COA kinase; s 92.6 0.071 2.4E-06 49.9 3.6 30 242-272 11-40 (210)
370 2ff7_A Alpha-hemolysin translo 92.6 0.047 1.6E-06 52.3 2.4 27 238-264 33-59 (247)
371 2o8b_B DNA mismatch repair pro 92.6 0.44 1.5E-05 54.8 10.8 23 240-262 789-811 (1022)
372 1sgw_A Putative ABC transporte 92.6 0.044 1.5E-06 51.4 2.2 27 238-264 33-59 (214)
373 1ji0_A ABC transporter; ATP bi 92.6 0.048 1.7E-06 51.9 2.4 27 238-264 30-56 (240)
374 3sop_A Neuronal-specific septi 92.6 0.064 2.2E-06 52.1 3.3 23 242-264 4-26 (270)
375 1lw7_A Transcriptional regulat 92.6 0.069 2.4E-06 53.9 3.7 28 240-267 170-197 (365)
376 1z2a_A RAS-related protein RAB 92.6 0.074 2.5E-06 46.0 3.5 23 241-263 6-28 (168)
377 1u8z_A RAS-related protein RAL 92.6 0.072 2.5E-06 45.9 3.4 23 241-263 5-27 (168)
378 1s2m_A Putative ATP-dependent 92.6 0.22 7.6E-06 49.9 7.5 22 241-262 59-80 (400)
379 2yz2_A Putative ABC transporte 92.5 0.058 2E-06 52.2 2.9 28 237-264 30-57 (266)
380 1vpl_A ABC transporter, ATP-bi 92.5 0.058 2E-06 52.0 2.9 28 237-264 38-65 (256)
381 2wjy_A Regulator of nonsense t 92.5 0.1 3.6E-06 58.4 5.3 23 242-264 373-395 (800)
382 2hf9_A Probable hydrogenase ni 92.5 0.16 5.6E-06 46.7 5.9 25 240-264 38-62 (226)
383 1kao_A RAP2A; GTP-binding prot 92.4 0.076 2.6E-06 45.7 3.3 23 241-263 4-26 (167)
384 2ce2_X GTPase HRAS; signaling 92.4 0.076 2.6E-06 45.5 3.3 23 242-264 5-27 (166)
385 2fwr_A DNA repair protein RAD2 92.4 0.088 3E-06 54.6 4.4 34 241-274 109-142 (472)
386 2qi9_C Vitamin B12 import ATP- 92.4 0.052 1.8E-06 52.1 2.4 28 238-265 24-51 (249)
387 2i4i_A ATP-dependent RNA helic 92.4 0.37 1.3E-05 48.4 9.0 17 240-256 52-68 (417)
388 3gfo_A Cobalt import ATP-bindi 92.4 0.051 1.8E-06 53.0 2.4 27 238-264 32-58 (275)
389 3v9p_A DTMP kinase, thymidylat 92.4 0.068 2.3E-06 50.7 3.1 25 240-264 25-49 (227)
390 1upt_A ARL1, ADP-ribosylation 92.4 0.099 3.4E-06 45.4 4.1 25 239-263 6-30 (171)
391 4g1u_C Hemin import ATP-bindin 92.4 0.052 1.8E-06 52.6 2.4 27 238-264 35-61 (266)
392 2yyz_A Sugar ABC transporter, 92.3 0.072 2.5E-06 54.0 3.5 27 238-264 27-53 (359)
393 2it1_A 362AA long hypothetical 92.3 0.071 2.4E-06 54.1 3.4 27 238-264 27-53 (362)
394 3d31_A Sulfate/molybdate ABC t 92.2 0.063 2.2E-06 54.2 2.9 27 238-264 24-50 (348)
395 1w36_D RECD, exodeoxyribonucle 92.2 0.075 2.6E-06 57.6 3.7 24 241-264 165-188 (608)
396 1ek0_A Protein (GTP-binding pr 92.2 0.086 2.9E-06 45.6 3.5 24 241-264 4-27 (170)
397 3ld9_A DTMP kinase, thymidylat 92.2 0.1 3.6E-06 49.2 4.2 27 240-266 21-47 (223)
398 1v43_A Sugar-binding transport 92.2 0.075 2.5E-06 54.2 3.4 28 237-264 34-61 (372)
399 2wji_A Ferrous iron transport 92.2 0.077 2.6E-06 46.5 3.1 23 241-263 4-26 (165)
400 2zej_A Dardarin, leucine-rich 92.2 0.063 2.2E-06 48.0 2.5 21 242-262 4-24 (184)
401 3rlf_A Maltose/maltodextrin im 92.2 0.077 2.6E-06 54.3 3.4 27 238-264 27-53 (381)
402 2nq2_C Hypothetical ABC transp 92.2 0.058 2E-06 51.9 2.4 27 238-264 29-55 (253)
403 2lkc_A Translation initiation 92.1 0.099 3.4E-06 45.8 3.8 24 239-262 7-30 (178)
404 1z47_A CYSA, putative ABC-tran 92.1 0.068 2.3E-06 54.2 2.9 27 238-264 39-65 (355)
405 2ihy_A ABC transporter, ATP-bi 92.1 0.059 2E-06 52.6 2.4 28 238-265 45-72 (279)
406 1z0j_A RAB-22, RAS-related pro 92.1 0.091 3.1E-06 45.5 3.4 24 241-264 7-30 (170)
407 1ky3_A GTP-binding protein YPT 92.0 0.089 3E-06 46.1 3.3 24 240-263 8-31 (182)
408 1wms_A RAB-9, RAB9, RAS-relate 92.0 0.092 3.1E-06 46.0 3.4 23 241-263 8-30 (177)
409 2nzj_A GTP-binding protein REM 92.0 0.082 2.8E-06 46.1 3.1 23 241-263 5-27 (175)
410 2ykg_A Probable ATP-dependent 92.0 0.37 1.3E-05 52.4 8.9 23 241-263 29-51 (696)
411 1g16_A RAS-related protein SEC 92.0 0.092 3.2E-06 45.5 3.3 23 241-263 4-26 (170)
412 1z08_A RAS-related protein RAB 92.0 0.089 3.1E-06 45.6 3.2 23 241-263 7-29 (170)
413 3iby_A Ferrous iron transport 91.9 0.19 6.6E-06 48.1 5.8 22 242-263 3-24 (256)
414 1g29_1 MALK, maltose transport 91.8 0.075 2.6E-06 54.1 2.9 27 238-264 27-53 (372)
415 1r2q_A RAS-related protein RAB 91.8 0.098 3.3E-06 45.2 3.3 23 241-263 7-29 (170)
416 2gj8_A MNME, tRNA modification 91.8 0.1 3.5E-06 46.2 3.4 24 240-263 4-27 (172)
417 1oxx_K GLCV, glucose, ABC tran 91.8 0.065 2.2E-06 54.2 2.4 28 237-264 28-55 (353)
418 1c1y_A RAS-related protein RAP 91.7 0.1 3.6E-06 45.0 3.4 23 241-263 4-26 (167)
419 2erx_A GTP-binding protein DI- 91.7 0.084 2.9E-06 45.7 2.7 23 241-263 4-26 (172)
420 1r8s_A ADP-ribosylation factor 91.7 0.11 3.7E-06 44.9 3.4 22 242-263 2-23 (164)
421 3q85_A GTP-binding protein REM 91.6 0.097 3.3E-06 45.5 3.1 21 242-262 4-24 (169)
422 3bc1_A RAS-related protein RAB 91.6 0.11 3.7E-06 46.1 3.5 23 241-263 12-34 (195)
423 3gd7_A Fusion complex of cysti 91.6 0.094 3.2E-06 53.8 3.3 28 237-264 44-71 (390)
424 3q72_A GTP-binding protein RAD 91.6 0.09 3.1E-06 45.5 2.8 21 242-262 4-24 (166)
425 1wrb_A DJVLGB; RNA helicase, D 91.6 0.37 1.3E-05 45.3 7.4 18 241-258 61-78 (253)
426 4a2p_A RIG-I, retinoic acid in 91.6 0.73 2.5E-05 48.1 10.4 24 241-264 23-46 (556)
427 1nij_A Hypothetical protein YJ 91.5 0.18 6.3E-06 49.9 5.4 23 242-264 6-28 (318)
428 2xzl_A ATP-dependent helicase 91.5 0.15 5E-06 57.2 5.1 22 242-263 377-398 (802)
429 2y8e_A RAB-protein 6, GH09086P 91.5 0.1 3.5E-06 45.6 3.1 23 241-263 15-37 (179)
430 2wjg_A FEOB, ferrous iron tran 91.5 0.1 3.6E-06 46.3 3.2 23 241-263 8-30 (188)
431 3clv_A RAB5 protein, putative; 91.5 0.13 4.5E-06 45.7 3.9 24 240-263 7-30 (208)
432 2bbs_A Cystic fibrosis transme 91.5 0.086 2.9E-06 51.8 2.8 28 237-264 61-88 (290)
433 3eiq_A Eukaryotic initiation f 91.5 0.32 1.1E-05 48.8 7.2 20 240-259 77-96 (414)
434 2a9k_A RAS-related protein RAL 91.4 0.11 3.9E-06 45.6 3.4 23 241-263 19-41 (187)
435 1z0f_A RAB14, member RAS oncog 91.4 0.11 3.8E-06 45.3 3.3 24 241-264 16-39 (179)
436 4dsu_A GTPase KRAS, isoform 2B 91.4 0.11 3.8E-06 45.9 3.2 24 241-264 5-28 (189)
437 3i8s_A Ferrous iron transport 91.4 0.34 1.2E-05 46.7 6.9 23 241-263 4-26 (274)
438 2fn4_A P23, RAS-related protei 91.3 0.12 4E-06 45.3 3.3 23 241-263 10-32 (181)
439 4ag6_A VIRB4 ATPase, type IV s 91.3 0.18 6E-06 51.2 5.1 35 239-273 34-71 (392)
440 4tmk_A Protein (thymidylate ki 91.3 0.13 4.5E-06 48.1 3.8 24 241-264 4-27 (213)
441 1yrb_A ATP(GTP)binding protein 91.3 0.25 8.4E-06 46.7 5.8 34 239-272 13-48 (262)
442 3nh6_A ATP-binding cassette SU 91.3 0.08 2.7E-06 52.5 2.4 28 237-264 77-104 (306)
443 1m7b_A RND3/RHOE small GTP-bin 91.3 0.11 3.8E-06 46.2 3.1 23 241-263 8-30 (184)
444 3con_A GTPase NRAS; structural 91.3 0.12 4E-06 46.1 3.3 24 241-264 22-45 (190)
445 3a1s_A Iron(II) transport prot 91.2 0.26 8.9E-06 47.2 5.9 22 241-262 6-27 (258)
446 2hxs_A RAB-26, RAS-related pro 91.2 0.11 3.9E-06 45.4 3.1 23 241-263 7-29 (178)
447 1pui_A ENGB, probable GTP-bind 91.2 0.077 2.6E-06 48.2 2.0 26 238-263 24-49 (210)
448 2oil_A CATX-8, RAS-related pro 91.2 0.12 4.1E-06 46.2 3.3 23 241-263 26-48 (193)
449 2pjz_A Hypothetical protein ST 91.1 0.095 3.3E-06 50.7 2.7 25 240-264 30-54 (263)
450 1svi_A GTP-binding protein YSX 91.1 0.12 4E-06 46.3 3.1 24 240-263 23-46 (195)
451 2efe_B Small GTP-binding prote 91.1 0.12 4.2E-06 45.3 3.2 23 241-263 13-35 (181)
452 3fmp_B ATP-dependent RNA helic 91.1 0.37 1.3E-05 50.0 7.4 51 204-257 92-148 (479)
453 2bme_A RAB4A, RAS-related prot 91.1 0.12 4E-06 45.7 3.1 23 241-263 11-33 (186)
454 3fmo_B ATP-dependent RNA helic 91.1 0.48 1.7E-05 46.3 7.8 52 203-257 91-148 (300)
455 3kkq_A RAS-related protein M-R 91.0 0.14 4.7E-06 45.2 3.5 24 240-263 18-41 (183)
456 3t1o_A Gliding protein MGLA; G 91.0 0.12 4.1E-06 46.0 3.1 24 241-264 15-38 (198)
457 3tw8_B RAS-related protein RAB 91.0 0.11 3.9E-06 45.4 2.9 22 241-262 10-31 (181)
458 2npi_A Protein CLP1; CLP1-PCF1 90.9 0.13 4.4E-06 53.9 3.6 26 239-264 137-162 (460)
459 2g6b_A RAS-related protein RAB 90.9 0.15 5E-06 44.8 3.5 23 241-263 11-33 (180)
460 1m2o_B GTP-binding protein SAR 90.8 0.14 4.7E-06 46.1 3.4 23 241-263 24-46 (190)
461 2vp4_A Deoxynucleoside kinase; 90.8 0.094 3.2E-06 49.2 2.3 31 238-269 18-48 (230)
462 3fht_A ATP-dependent RNA helic 90.8 0.4 1.4E-05 48.0 7.2 18 240-257 64-81 (412)
463 1mh1_A RAC1; GTP-binding, GTPa 90.8 0.14 4.7E-06 45.1 3.3 23 241-263 6-28 (186)
464 2v6i_A RNA helicase; membrane, 90.8 0.21 7.3E-06 51.5 5.1 21 241-261 3-24 (431)
465 1f2t_A RAD50 ABC-ATPase; DNA d 90.8 0.16 5.6E-06 44.5 3.6 24 241-264 24-47 (149)
466 1ko7_A HPR kinase/phosphatase; 90.7 0.19 6.5E-06 50.0 4.5 29 239-268 143-171 (314)
467 2orv_A Thymidine kinase; TP4A 90.7 0.46 1.6E-05 45.1 7.0 32 241-272 20-54 (234)
468 2atv_A RERG, RAS-like estrogen 90.7 0.17 5.8E-06 45.5 3.9 24 240-263 28-51 (196)
469 2dpy_A FLII, flagellum-specifi 90.7 0.21 7.2E-06 51.9 5.0 29 239-267 156-184 (438)
470 2gf9_A RAS-related protein RAB 90.6 0.14 4.9E-06 45.6 3.3 24 241-264 23-46 (189)
471 2cxx_A Probable GTP-binding pr 90.6 0.13 4.3E-06 45.6 2.9 22 242-263 3-24 (190)
472 3bwd_D RAC-like GTP-binding pr 90.6 0.18 6.1E-06 44.3 3.8 23 241-263 9-31 (182)
473 3pqc_A Probable GTP-binding pr 90.6 0.14 4.9E-06 45.4 3.1 23 241-263 24-46 (195)
474 1moz_A ARL1, ADP-ribosylation 90.6 0.12 4E-06 45.6 2.5 24 239-262 17-40 (183)
475 3tkl_A RAS-related protein RAB 90.5 0.15 5.1E-06 45.5 3.3 24 241-264 17-40 (196)
476 1ksh_A ARF-like protein 2; sma 90.5 0.17 5.6E-06 44.9 3.5 25 239-263 17-41 (186)
477 2gf0_A GTP-binding protein DI- 90.5 0.18 6.3E-06 45.0 3.9 24 240-263 8-31 (199)
478 2bov_A RAla, RAS-related prote 90.5 0.16 5.6E-06 45.6 3.5 23 241-263 15-37 (206)
479 1wp9_A ATP-dependent RNA helic 90.5 0.33 1.1E-05 49.2 6.2 32 242-273 25-60 (494)
480 1vg8_A RAS-related protein RAB 90.5 0.16 5.3E-06 45.9 3.3 25 240-264 8-32 (207)
481 3i5x_A ATP-dependent RNA helic 90.4 1.1 3.8E-05 47.3 10.5 18 239-256 110-127 (563)
482 3ihw_A Centg3; RAS, centaurin, 90.4 0.15 5.2E-06 45.7 3.2 23 241-263 21-43 (184)
483 3c5c_A RAS-like protein 12; GD 90.4 0.15 5.2E-06 45.6 3.2 23 241-263 22-44 (187)
484 2iwr_A Centaurin gamma 1; ANK 90.4 0.12 4.1E-06 45.4 2.5 23 241-263 8-30 (178)
485 3tui_C Methionine import ATP-b 90.4 0.15 5.1E-06 51.8 3.4 28 237-264 51-78 (366)
486 2obl_A ESCN; ATPase, hydrolase 90.4 0.2 6.9E-06 50.4 4.4 29 239-267 70-98 (347)
487 1x3s_A RAS-related protein RAB 90.3 0.16 5.4E-06 45.2 3.3 23 241-263 16-38 (195)
488 3t5g_A GTP-binding protein RHE 90.3 0.15 5.3E-06 44.8 3.1 22 241-262 7-28 (181)
489 1gm5_A RECG; helicase, replica 90.3 1.2 4.2E-05 49.6 11.1 33 240-272 389-424 (780)
490 2p5s_A RAS and EF-hand domain 90.3 0.19 6.4E-06 45.4 3.7 24 240-263 28-51 (199)
491 2fg5_A RAB-22B, RAS-related pr 90.2 0.15 5.2E-06 45.7 3.1 23 241-263 24-46 (192)
492 1zd9_A ADP-ribosylation factor 90.2 0.16 5.6E-06 45.3 3.3 23 241-263 23-45 (188)
493 3hjn_A DTMP kinase, thymidylat 90.2 0.3 1E-05 44.8 5.1 30 243-272 3-35 (197)
494 4hlc_A DTMP kinase, thymidylat 90.2 0.27 9.3E-06 45.5 4.8 30 242-271 4-35 (205)
495 3reg_A RHO-like small GTPase; 90.1 0.17 5.7E-06 45.4 3.3 24 241-264 24-47 (194)
496 2a5j_A RAS-related protein RAB 90.1 0.17 5.8E-06 45.3 3.3 23 241-263 22-44 (191)
497 1z06_A RAS-related protein RAB 90.1 0.18 6E-06 45.0 3.3 23 241-263 21-43 (189)
498 2b6h_A ADP-ribosylation factor 90.1 0.22 7.6E-06 44.8 4.0 24 239-262 28-51 (192)
499 2bcg_Y Protein YP2, GTP-bindin 90.1 0.16 5.5E-06 45.9 3.1 23 241-263 9-31 (206)
500 3cph_A RAS-related protein SEC 90.0 0.2 6.9E-06 45.3 3.7 24 240-263 20-43 (213)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-48 Score=399.89 Aligned_cols=258 Identities=34% Similarity=0.549 Sum_probs=235.0
Q ss_pred HhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 193 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.+....+.|+++|+||+|++++|++|++.+.+|+.+|++|... +.+|+|+|||||||||||++|+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34566778899999999999999999999999999999999875 88999999999999999999999999999999999
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
+++++.++|+|++++.++.+|..|+..+||||||||+|+++++|.... ..+....+++++||..||++... ..|+||+
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIa 292 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIM 292 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEe
Confidence 999999999999999999999999999999999999999999876433 33445678899999999998654 4588999
Q ss_pred EeCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011400 351 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 428 (487)
Q Consensus 351 tTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr 428 (487)
|||+|+.||+|++| ||+..|++++|+.++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|++.|+++
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999988888899999999999999999999999999999874
Q ss_pred HHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 429 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 429 ~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
. ...||.+||..|++++.+...+
T Consensus 373 ~------------------~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 R------------------RIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp T------------------CSBCCHHHHHHHHHHHHHHHTC
T ss_pred C------------------CCCcCHHHHHHHHHHHhCcccc
Confidence 1 1358999999999998766544
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-46 Score=392.81 Aligned_cols=262 Identities=33% Similarity=0.551 Sum_probs=230.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|.++|+||+|++++|++|++.+.+|+.+|++|..+ +.+++|||||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 446799999999999999999999999999999999875 7999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......++++++|..||+..... .|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEeCCCCc
Confidence 9999999999999999999999999999999999998876432 344556778899999999886554 58899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.||+|++| ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999888888999999999999999999999999999998851
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh--hHHHHHHHH
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 478 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~--~~~~y~~~~ 478 (487)
...||.+||.+|++++.++... ...+|.+||
T Consensus 435 --------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1348999999999998765543 357788886
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-46 Score=391.71 Aligned_cols=255 Identities=33% Similarity=0.556 Sum_probs=232.6
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...+.|.++|+||+|++++|+.|++.+.+|+.+|++|... +++++|||||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3456799999999999999999999999999999999765 889999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+.++|+|++++.++.+|..|+..+||||||||+|.+++.|..... ......++++.||..||++.... .|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeCCC
Confidence 999999999999999999999999999999999999998865433 23345678899999999987654 4789999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.||+|++| ||++.|+|++|+.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999988 99999999999999999999999988888888999999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
...|+.+||.+|+++++|+.+..
T Consensus 407 ---------------~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---------------QSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------CSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------CCCcCHHHHHHHHHHHhCCCCcC
Confidence 13589999999999999987754
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-46 Score=388.85 Aligned_cols=254 Identities=33% Similarity=0.532 Sum_probs=231.4
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
...+.|.++|+||+|++++|++|++.+.+|+.+|++|... +.+++|||||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 3457899999999999999999999999999999999865 789999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... ......+++++||..+|++.... .|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCC
Confidence 999999999999999999999999999999999999998854332 23345678889999999886554 4889999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.||+|++| ||+..|+|++||.++|.+||+.+++......+++++.+|+.|+||||+||.++|++|++.|+++.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999 99999999999999999999999999888888999999999999999999999999999998741
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
...||.+||.+|++++.|+..+
T Consensus 408 ---------------~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 ---------------RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp ---------------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred ---------------CCccCHHHHHHHHHHHhCCCCh
Confidence 1348999999999999887664
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-46 Score=387.69 Aligned_cols=254 Identities=34% Similarity=0.582 Sum_probs=230.9
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
....+.|.++|+||+|++++|+.|++.+.+|+.+|++|... +.+++|||||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34556899999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 353 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn 353 (487)
++.++|.|++++.++.+|..|+..+||||||||+|.++++|.... .......+++++||..||++.... .|+||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEEecC
Confidence 999999999999999999999999999999999999998875432 234456778899999999987654 477999999
Q ss_pred CCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 354 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 354 ~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
+|+.||+|++| ||+..|+|++|+.++|.+||+.++.+.....+.+++.+|+.|+||||+||.++|++|++.|+++-
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-- 406 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-- 406 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT--
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999998 69999999999999999999999998888888999999999999999999999999999998741
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
...|+.+||.+|++++.|+..
T Consensus 407 ----------------~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 407 ----------------RDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp ----------------CSSBCHHHHHHHHHHHHHTCC
T ss_pred ----------------CCCCCHHHHHHHHHHHHhccC
Confidence 134899999999999988755
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.1e-47 Score=420.94 Aligned_cols=289 Identities=34% Similarity=0.618 Sum_probs=198.8
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
++.....|.++|+|++|++++|+.|++.+.+|+.+++.|... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 344456788999999999999999999999999999999876 8899999999999999999999999999999999999
Q ss_pred ccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe
Q 011400 274 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 352 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT 352 (487)
+++.++|+|++++.++.+|..|+..+||||||||+|++++.|+.. ...+...++++++||.+||++.... .|+||+||
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~-~V~vi~aT 623 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGAT 623 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS-SEEEECC-
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC-CEEEEEeC
Confidence 999999999999999999999999999999999999999988643 3345567899999999999997654 58999999
Q ss_pred CCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 353 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 353 n~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
|+|+.||+|++| ||++.+++++|+.++|.+||+.++++.....+++++.||+.|+||||+||.++|++|++.|+|+.+
T Consensus 624 N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHH
T ss_pred CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999998888889999999999999999999999999999999876
Q ss_pred HHhhchhc-------cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchh
Q 011400 431 VLLEGRQE-------VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSE 484 (487)
Q Consensus 431 ~~le~~~~-------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~ 484 (487)
........ ...........+|+++||++|+++++||++++ +..|++|.+.|++.
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 704 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp C-----------------------CCC----CCTTTC---------------CCCC------
T ss_pred HhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 43211100 00001111235699999999999999999975 79999998888753
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=376.36 Aligned_cols=253 Identities=36% Similarity=0.594 Sum_probs=228.9
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+.|+++|+||+|++++|+.|++.+.+|+.+|++|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 456799999999999999999999999999999999875 8999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... ..+....+++++||..||++.... .|+||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 9999999999999999999999999999999999999875432 233456789999999999987654 48899999999
Q ss_pred CcccHHHHh--hccccccCC-CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 356 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~-~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
+.||+|++| ||+..|++| +|+.++|..||+.++.+.....+.+++.+|..|+||||+||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 999999999 999999996 89999999999999998888888999999999999999999999999999998851
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHhc-cCCChhh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALKN-TRPSAHL 469 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~~-~~ps~~~ 469 (487)
...|+.+||.+|+.+ ++++.+.
T Consensus 399 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 399 ---------------RYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---------------CSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---------------CCCCCHHHHHHHHHHhhCccCCc
Confidence 134899999999976 4665543
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-43 Score=356.82 Aligned_cols=283 Identities=48% Similarity=0.834 Sum_probs=246.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~ 277 (487)
.+.|.++|+||+|++.+|+.|++.+.+|+.+++++.....+++++||+||||||||++|+++|+++ +.+++.++++++.
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457889999999999999999999999999999998777888999999999999999999999999 8999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCc
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 357 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~ 357 (487)
++|.|.+++.++.+|..++..+|+||||||+|.+.+.+... ......+++++|+..++++......++||++||.|+.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 99999999999999999999999999999999999876543 3445678899999999998665677999999999999
Q ss_pred ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 358 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 358 Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
+|++++|||+..+++++|+.++|.+|++.++...... .+.+++.+++.+.||+|+||..+|++|+..++++......-.
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999998776543 456688999999999999999999999999999876421100
Q ss_pred h--c------------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhch
Q 011400 437 Q--E------------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGS 483 (487)
Q Consensus 437 ~--~------------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~ 483 (487)
. . ..+.+. ....+||++||..|+++++||++.+ +..|++|+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 0 0 000000 0124799999999999999999974 7999999999998
Q ss_pred h
Q 011400 484 E 484 (487)
Q Consensus 484 ~ 484 (487)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-42 Score=352.39 Aligned_cols=286 Identities=49% Similarity=0.793 Sum_probs=245.2
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.+....|+++|++|+|++.+|+.|++.+.+|+.+++++.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 45667899999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.|.|.+++.++.+|..++...|+||||||+|.+.+.+... ......++.+.++..+++.......++||++||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 23345778899999999886666779999999999
Q ss_pred CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 356 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 356 ~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
+.+|+++++||+..+++++|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|+..++++..+...
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999876644 4456889999999999999999999999999999876421
Q ss_pred chhc--------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 011400 435 GRQE--------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 484 (487)
Q Consensus 435 ~~~~--------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 484 (487)
.... ..+.+ .....+||++||.+|++.++||++. +...|++|++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1100 00001 1123579999999999999999987 479999999999986
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=5.2e-42 Score=352.60 Aligned_cols=295 Identities=48% Similarity=0.789 Sum_probs=233.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 187 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
..+.+.+...+....|.++|++|+|++.+++.|.+.+.+++.+++++.....+++++||+||||||||++|+++|++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 31 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp ----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44455566667778899999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+++.++++++.+.+.|.+++.++.+|..++...|+||||||+|.+.+.+... .....+++.++|+..++++......+
T Consensus 111 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 111 TFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp EEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred CEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCe
Confidence 9999999999999999999999999999999999999999999998776543 34456788899999999886656679
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.|+.+++++++||+..+++++|+.++|.+||+.++...... .+.+++.|++.+.||+|+||..+|++|+..+
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999776543 4556889999999999999999999999999
Q ss_pred HHHHHHHhhchh----------------------c----cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHH
Q 011400 426 LRRLMVLLEGRQ----------------------E----VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFN 478 (487)
Q Consensus 426 ~rr~~~~le~~~----------------------~----~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~ 478 (487)
+++......-.. . ....+ .....+|+++||..|++.++||++.+ +..|++|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~ 347 (355)
T 2qp9_X 269 IRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFT 347 (355)
T ss_dssp HHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGG-GBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccccccccccCcCCccccchhhccccccccc-ccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 998654210000 0 00000 01135699999999999999999975 79999999
Q ss_pred HHhchh
Q 011400 479 ADYGSE 484 (487)
Q Consensus 479 ~~~g~~ 484 (487)
+.||++
T Consensus 348 ~~~~~~ 353 (355)
T 2qp9_X 348 RDFGQE 353 (355)
T ss_dssp HHTC--
T ss_pred HHhccC
Confidence 999986
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=4e-41 Score=355.92 Aligned_cols=294 Identities=47% Similarity=0.803 Sum_probs=237.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-CC
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KT 266 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-~~ 266 (487)
.+.+.+...+....|.++|+||+|++.+++.|.+.+.+|+.++++|.....+++++||+||||||||++|+++|+++ +.
T Consensus 115 ~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~ 194 (444)
T 2zan_A 115 KLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS 194 (444)
T ss_dssp ---------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS
T ss_pred HHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34445666777788999999999999999999999999999999988767788999999999999999999999999 89
Q ss_pred cEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 267 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 267 ~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
+|+.++++++.+.|.|.+++.++.+|..++...|+||||||+|.+.+.+... ......++.+.|+..++++......+
T Consensus 195 ~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 195 TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp EEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred CEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCE
Confidence 9999999999999999999999999999999999999999999998876543 23445788899999999886556678
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||+|||.|+.+|++++|||+..+++++|+.++|..|++.++...... .+.+++.|+..+.||+|+||..+|++|+..+
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQP 352 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766543 4567889999999999999999999999999
Q ss_pred HHHHHHHhhch-----hc---------------------------cCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHH
Q 011400 426 LRRLMVLLEGR-----QE---------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 472 (487)
Q Consensus 426 ~rr~~~~le~~-----~~---------------------------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~ 472 (487)
+++......-. .. ..+.+. ....+||++||..|++.++||++. ++.
T Consensus 353 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~a~~~~~ps~~~~~~~ 431 (444)
T 2zan_A 353 VRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMWDMLRSLSSTKPTVNEQDLL 431 (444)
T ss_dssp HHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTC-BCCCCEEHHHHHHHHHTCCCSCCHHHHH
T ss_pred HHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhh-ccCCccCHHHHHHHHHhCCCCCCHHHHH
Confidence 99976531000 00 000000 012479999999999999999997 479
Q ss_pred HHHHHHHHhchh
Q 011400 473 RYEKFNADYGSE 484 (487)
Q Consensus 473 ~y~~~~~~~g~~ 484 (487)
.|++|++.||++
T Consensus 432 ~~~~~~~~~~~~ 443 (444)
T 2zan_A 432 KLKKFTEDFGQE 443 (444)
T ss_dssp HHHHHTSSCTTT
T ss_pred HHHHHHHHHcCC
Confidence 999999999986
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.3e-41 Score=373.60 Aligned_cols=266 Identities=34% Similarity=0.558 Sum_probs=236.7
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..|.++|+||+|++++|++|++.+.+|+.+|+.|..+ +.+|+|||||||||||||+||+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4578999999999999999999999999999999887 789999999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+|.|++++.++.+|..|+.++||||||||+|.|++++.+.. ++..++++++|+..|+++.... .|+||++||+|+.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986554 58899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||++.|++++|+.++|.+||+.+++......++++..+|..|.||+|+||..+|++|+..+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999998888899999999999999999999999999999999987655432
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
......+. .....|+.+||..|++.++|+...
T Consensus 434 ~~~~~~e~-~~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 434 DETIDAEV-MNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp CCCCSHHH-HHHCEECTTHHHHHHSSSSCCCCC
T ss_pred ccccchhh-hccceeeHHHHHHHHHhCCCcccc
Confidence 22111110 112358999999999999998753
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=5.9e-40 Score=329.62 Aligned_cols=287 Identities=34% Similarity=0.618 Sum_probs=241.7
Q ss_pred hhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 194 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 194 ~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|+.....|.++|+||+|++.+++.|.+.+.+++.+++.+... +.+++++||+||||||||++|+++|++++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 3566777899999999999999999999999999999988765 678899999999999999999999999999999999
Q ss_pred cccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 273 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 273 ~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
++++.+.+.|.+++.++.+|..+....|+||||||+|.+...++.... ......++++.|+..++++... ..++||++
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~a 160 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGA 160 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEe
Confidence 999999999999999999999999999999999999999987643211 1122346778899999987543 45889999
Q ss_pred eCCCCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 352 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 352 Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
||.++.+|+++++ ||+..+++++|+.++|.+|++.++.......+.+++.++..+.||+|+||.++|++|+..++++.
T Consensus 161 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 161 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999988777777889999999999999999999999999999887
Q ss_pred HHHhhchhcc-------CCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHh
Q 011400 430 MVLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADY 481 (487)
Q Consensus 430 ~~~le~~~~~-------~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~ 481 (487)
+......... ...+.......|+++||..||++++||++.+ +..|++|.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 6432111000 0000011224699999999999999999974 79999999988
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=323.59 Aligned_cols=289 Identities=43% Similarity=0.741 Sum_probs=241.7
Q ss_pred HHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 188 ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.+.+.+.+++....++.+|++|+|++.+++.|.+.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp HHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 34556778888889999999999999999999999999999999887777788999999999999999999999999999
Q ss_pred EEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcE
Q 011400 268 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELV 346 (487)
Q Consensus 268 ~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~V 346 (487)
++.++++++...+.|..++.++.+|..+....|+||||||+|.+...+... ......++++.++..+++... ....+
T Consensus 145 ~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 145 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCE
Confidence 999999999999999999999999999999999999999999998765432 234557788899999998753 34568
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.++.+++++++||...+++++|+.++|.++++.++...... .+.+++.+++.+.||+++||..+|++|+..+
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ 302 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP 302 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988655433 2345788999999999999999999999999
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh-hHHHHHHHHHHhchh
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 484 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 484 (487)
++++.+..... . ......+|+.+||..|+++++||++. ++..|++|.+.||+.
T Consensus 303 ir~l~~~~~~~--~----~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 303 IRSLQTADIAT--I----TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHhhhhhhcc--c----cccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 98642211110 0 01223579999999999999999886 589999999999974
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4e-38 Score=314.02 Aligned_cols=290 Identities=46% Similarity=0.764 Sum_probs=235.3
Q ss_pred HHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 189 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+++.+.+++....++.+|++++|++.+++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 56678888888999999999999999999999999999999998887777789999999999999999999999999999
Q ss_pred EEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC--CCcE
Q 011400 269 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV 346 (487)
Q Consensus 269 i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~--~~~V 346 (487)
+.++++++...+.|..+..++.+|..+....|+||||||+|.+...+.... ......+.+.++..+++.... ...+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcE
Confidence 999999999999999999999999999999999999999999987654321 222356777888888876432 2468
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
+||++||.++.+++++++||...+++++|+.++|..|++.++...... .+..++.+++.+.||+++||..+|++|+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988765443 2345788999999999999999999999999
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchhhc
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSEIL 486 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~~~ 486 (487)
+++......... .......|+.+||..|+..++||.+.+ +..|++|.+.||+-.+
T Consensus 241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (297)
T 3b9p_A 241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296 (297)
T ss_dssp HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC--------
T ss_pred HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCeec
Confidence 986432111110 112235699999999999999998864 7999999999998543
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=304.61 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=207.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..|.++|+||+|++++|+.|++.+.+|+.+++.+... +.+++|++|+||||||||+|++++|.+++..++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578899999999999999999999999999988776 678889999999999999999999999999999999999988
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.+.++.++.+..+|..++...|+++|+||+|.+...+... ......++.++++..|++.... ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8989899999999999988899999999999987654321 1122345778899999987543 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~---~~~~~~~l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
|++++| ||+..+++++|+.++|.+||+.+++.. ....+.+++.+|..+ +||+|+||..+|++|+..++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998643 334678899999874 5999999999999999999987543
Q ss_pred HhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 432 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 432 ~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
..... . ......|+++||++|+++++||++.+
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 11124699999999999999998864
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=313.78 Aligned_cols=288 Identities=43% Similarity=0.706 Sum_probs=231.4
Q ss_pred HHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 190 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.+.+.+++....+.++|++|+|++.+++.|.+.+..++.+++++.....+++++||+||||||||++|+++|++++.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 98 ANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 33566778888899999999999999999999999999999988877778899999999999999999999999999999
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-CCCcEEE
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 348 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-~~~~VlV 348 (487)
.+++.++.+.+.|..+..++.+|..+....|+||||||||.+...+... ......++++.|+..+++... ....++|
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 9999999999999999999999999999999999999999998765432 233456788889999987754 3456899
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 427 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~r 427 (487)
|++||.++.+++++++||...++++.|+.++|.+|++.++...... .+..+..++..+.||++++|..++++|+..+++
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~r 335 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999889999999999999999998765443 234578899999999999999999999999998
Q ss_pred HHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhchhh
Q 011400 428 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGSEI 485 (487)
Q Consensus 428 r~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~~~ 485 (487)
++.+.... .........|+.+||..+++.++|+.+.+ +..|++|.+.||+..
T Consensus 336 el~~~~~~------~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 336 ELKPEQVK------NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp TSCCC---------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhhhh------ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 64321111 11112235699999999999999998864 799999999999864
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9.8e-35 Score=287.55 Aligned_cols=269 Identities=35% Similarity=0.561 Sum_probs=219.3
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...|.++|++|+|++.+++.|.+.+..++..++.+... ..+++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678999999999999999999999999888887765 57889999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~-~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..+.|.....+..+|..+....|+||||||+|.+.+++.+... ........+..++..+++.... ..++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 9999999999999999999999999999999999877654322 2333456667788888776544 3588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++||..+|++|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988777778889999999999999999999999998887641
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh---hHHHHHHHHHHhchhhc
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGSEIL 486 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~---~~~~y~~~~~~~g~~~~ 486 (487)
...|+.+||.+|++++.+.... .-..|..|...||++-+
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 1359999999999998755433 35889999999998743
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.2e-35 Score=311.57 Aligned_cols=279 Identities=33% Similarity=0.537 Sum_probs=228.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
+.++|++|+|++.++++|.+.+..++.+++.+..+ ..++++|||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45789999999999999999999999999988876 68889999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
.|+.+..++.+|..+....|++|||||+|.+.++++.. ..+...++++.|+..|++.... ..++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345678889999999977544 45889999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 361 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 361 aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
++++ ||...+++++|+.++|.+||+.++.......+.++..++..+.||+++||..+|++|+..++++....+.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9998 99999999999999999999999998888888889999999999999999999999999999875432211111
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh---HHHHHHHHHHhchh
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSE 484 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~---~~~y~~~~~~~g~~ 484 (487)
.... .......||++||.+|+++++||...+ ...-..|.+..|-+
T Consensus 436 ~~~~-~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 436 TIDA-EVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp SCCH-HHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ccch-hhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 0000 001124599999999999999998865 46667899998854
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3e-32 Score=266.31 Aligned_cols=247 Identities=33% Similarity=0.513 Sum_probs=208.7
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...+..+|+||+|++.+++.|.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.+++.++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456788999999999999999998765 5556555544 56778999999999999999999999999999999999999
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 356 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~ 356 (487)
..+.|..++.++.+|..+....|+++||||+|.+...++... .......++++.++..+++.... ..++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCch
Confidence 999999999999999999988899999999999987654321 12223456788899999987543 4588999999999
Q ss_pred cccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 357 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 357 ~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
.+++++++ ||+..+.+++|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++.
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~----- 236 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN----- 236 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988777777888999999999999999999999998876631
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
...|+.+||.+|++.+..
T Consensus 237 -------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 237 -------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -------------CSSBCHHHHHHHHHHHTT
T ss_pred -------------CCcccHHHHHHHHHHHhc
Confidence 135999999999998764
No 21
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=9.4e-36 Score=335.55 Aligned_cols=285 Identities=34% Similarity=0.623 Sum_probs=217.1
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....+.++|++++|++.+|+.|.+.+.+++.+++.+... +.++.++||+||||||||++|+++|++++.+++.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 445678999999999999999999999999998887765 6788899999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.++|+|++++.++.+|..++...|+||||||+|.+...+... ........+++++|+..|++.... ..++||+|||+|
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRP 626 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecCCc
Confidence 999999999999999999999999999999999998877543 233456788999999999988544 457899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|++++| ||+..+++++|+.++|.+||+.++.......+.+++.+++.+.||+++||..+|++|+..++++.+...
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999888877788899999999999999999999999999998754321
Q ss_pred hchh-c------cCCCCCCCCCCCCCHHHHHHHHhccCCChhhh-HHHHHHHHHHhch
Q 011400 434 EGRQ-E------VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH-AHRYEKFNADYGS 483 (487)
Q Consensus 434 e~~~-~------~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~-~~~y~~~~~~~g~ 483 (487)
.... . ............|+.+||.+|++.++||++.+ +..|++|.+.|..
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC----------------------
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 1000 0 00001111234699999999999999999975 7999999987643
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.3e-32 Score=288.90 Aligned_cols=246 Identities=37% Similarity=0.567 Sum_probs=209.2
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++++|++|++.+.. +..+..+... ...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998865 4556656554 6778899999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~-~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..+....|+||||||+|.+..+++... ..+....++++.|+..++++... ..++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 9999999999999999999999999999999987765321 22334457889999999977543 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||+..+.+++|+.++|.+|++.+++......+.++..++..+.||+|+||.++|++|+..+.++.
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~------- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG------- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-------
Confidence 999988 99999999999999999999999988777777889999999999999999999999998876531
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
...|+.+||..|+.++.+.
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--
T ss_pred -----------CCeecHHHHHHHHHHHhcC
Confidence 1359999999999998754
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.98 E-value=1.9e-32 Score=267.13 Aligned_cols=248 Identities=34% Similarity=0.518 Sum_probs=191.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 280 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~ 280 (487)
|.++|++|+|++.+|+.|.+.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 567899999999999999998765 5556655443 57788999999999999999999999999999999999999888
Q ss_pred cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 281 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 281 ~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.+.....++.+|..+....|+||||||+|.+..++..... ........+..++..+++.... ..++||++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-DHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT-CCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC-CCEEEEecCCChhhc
Confidence 8888999999999999888999999999999876543211 1222345667788888876443 458899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 434 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~--l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le 434 (487)
|+++++ ||+..+++++|+.++|.+|++.++.......+.+ ...++..+.||++++|..++++|+..+.++.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~----- 233 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG----- 233 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 999999 9999999999999999999999987665544333 3678999999999999999999998877642
Q ss_pred chhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 435 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 435 ~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
...|+.+||..|++++.++...
T Consensus 234 -------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 -------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHHC
T ss_pred -------------CCCCCHHHHHHHHHHhccChhh
Confidence 1348999999999998776543
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.8e-30 Score=276.96 Aligned_cols=260 Identities=34% Similarity=0.534 Sum_probs=216.1
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
.+.++|+||+|++++|+++.+.+.. +..+..+... ...+++++|+||||||||+||+++|.+++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3788999999999999999998765 4455555554 6778899999999999999999999999999999999999988
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
+.|.....++.+|..+....|+|+||||+|.+...++.. ........+.+++++..|++.... ..++++++||+|+.+
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~-~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-TAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS-CCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC-ccEEEEEecCChhhc
Confidence 999888899999999888889999999999998765421 112334467788999999987643 457899999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|++++| ||+..+.+++|+.++|.+||+.+++......+.++..++..+.|++|+||.++|++|+..+.++
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~-------- 254 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE-------- 254 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT--------
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--------
Confidence 999998 8999999999999999999999998777777888999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh-------hhHHHHHHHHHH
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNAD 480 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~-------~~~~~y~~~~~~ 480 (487)
....|+.+||..|+.++.+... ++..+...|++.
T Consensus 255 ----------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~ 295 (499)
T 2dhr_A 255 ----------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEA 295 (499)
T ss_dssp ----------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHH
T ss_pred ----------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHH
Confidence 1135999999999999876532 234445555543
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=5.7e-30 Score=249.76 Aligned_cols=245 Identities=36% Similarity=0.569 Sum_probs=200.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+....|.++|++++|++.++.++++..... ..+..+... ...++|++|+||||||||++++++++.++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 345678999999999999999999877653 344444433 566788999999999999999999999999999999998
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
+...+.+...+.+..+|..+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~ 163 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNR 163 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCC
Confidence 8888888888888999999887789999999999998665321 11223345677888899987754 345788999999
Q ss_pred CCcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011400 355 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 432 (487)
Q Consensus 355 p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~ 432 (487)
|+.+|+++++ ||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++||..+|++|+..+.++
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---- 239 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---- 239 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 8999999999999999999999887776667788999999999999999999999998877653
Q ss_pred hhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 433 LEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 433 le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....||.+||++|++
T Consensus 240 --------------~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 240 --------------GRRKITMKDLEEAAS 254 (254)
T ss_dssp --------------TCSSBCHHHHHHHTC
T ss_pred --------------cCCCcCHHHHHHHhC
Confidence 113599999999873
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=9e-33 Score=271.29 Aligned_cols=253 Identities=34% Similarity=0.526 Sum_probs=205.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...+..+|++++|++.+++.|.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 356788999999999999999998765 5666665543 56778899999999999999999999999999999999998
Q ss_pred hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 278 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 278 ~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~--~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
..+.|.....++.+|..+....|+||||||+|.+...+..... ......++++.|+..+++.......++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 8888887777888899999889999999999999876422110 00011234456777777765555668899999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+++++++ ||+..++++.|+.++|.++++.++.......+.+++.++..+.||+|+||..++++|+..+.++
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~----- 236 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN----- 236 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS-----
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998777666777888999999999999999999987764321
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhhh
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 470 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~~ 470 (487)
....|+.+|+.+|+..+.|+...+
T Consensus 237 -------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 113599999999999999987653
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=1.8e-28 Score=242.78 Aligned_cols=244 Identities=36% Similarity=0.567 Sum_probs=198.6
Q ss_pred hcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 198 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
....|.++|++++|.+++++++....... ..+..+... ...+++++|+||||||||+|+++++..++..++.+++.++
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 33458899999999999999999877653 334444433 5667789999999999999999999999999999999988
Q ss_pred hhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 277 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
...+.+...+.+..+|..+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.|
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p 188 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRP 188 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCT
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCc
Confidence 887778788888999999988889999999999997654321 01122345667788888887653 3457889999999
Q ss_pred CcccHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011400 356 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 433 (487)
Q Consensus 356 ~~Ld~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~l 433 (487)
+.+|+++++ ||+..++++.|+.++|.+||+.++.......+.++..++..+.|++++||..+|++|+..+.++
T Consensus 189 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~----- 263 (278)
T 1iy2_A 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 263 (278)
T ss_dssp TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999987776667788999999999999999999999998876542
Q ss_pred hchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 434 EGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 434 e~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
....|+.+||++|++
T Consensus 264 -------------~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 -------------GRRKITMKDLEEAAS 278 (278)
T ss_dssp -------------TCCSBCHHHHHHHTC
T ss_pred -------------CCCCcCHHHHHHHhC
Confidence 113599999999873
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=6.7e-28 Score=271.62 Aligned_cols=265 Identities=34% Similarity=0.567 Sum_probs=226.4
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCC-CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~-~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
..+.++|+||+|++.++++|.+.+..++.+++++..+ +.++.++||+||||||||++|+++|++++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 3467899999999999999999999999999999887 788899999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcc
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 358 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~L 358 (487)
.+.|+.+..++.+|..+....|+++||||+|.+...+... ..+...++...|+..+++.... ..+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876532 2345577888999999988655 447788999999999
Q ss_pred cHHHHh--hccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhch
Q 011400 359 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 436 (487)
Q Consensus 359 d~aL~r--Rf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~ 436 (487)
|+++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.||+++++..++++|+..++++....+...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999998 999999999999999999999999888888888899999999999999999999999999888654322211
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhccCCChh
Q 011400 437 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 468 (487)
Q Consensus 437 ~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~ 468 (487)
......+ ......++.+|+..++....|+..
T Consensus 434 ~~~~~~~-~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 434 DETIDAE-VMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHCCHH-HHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhccchh-hhhhhhhhhhhhhccccccCchhh
Confidence 1110000 011245889999999999888754
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=3.1e-26 Score=229.09 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=134.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHH----HhcCCcEEEechhhhHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 312 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a----~~~~p~IL~IDEiD~L~ 312 (487)
..+++++|||||||||||++|+++|++++.+++.++++++.+.+.|.++..++.+|..+ +...|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46778999999999999999999999999999999999999999999999999999988 56789999999999998
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEEEEEEeCCCCcccHHHHh--hccccccCCCCCHHHH
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 380 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~~Pd~eeR 380 (487)
+.+..........+.+.+.|+..+|+.. .....++||+|||.++.+|++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654333223344567788999987543 123458899999999999999997 8988776 5799999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011400 381 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 416 (487)
Q Consensus 381 ~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~ 416 (487)
.+|++.++... ..+.+.+++.+.||++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887643 566899999999999998864
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=5.2e-24 Score=225.58 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=139.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccchh
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS 278 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~l~~ 278 (487)
.|...|++++|++++++.+.+++... .....+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 35567999999999999998877432 22235678999999999999999999999999 9999999999999
Q ss_pred hccCCcHHHHHHHHHHH---HhcCCcEEEechhhhHHhhhcccchhhH--HHH---------------HHHHHHHHHhcC
Q 011400 279 KWRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--ASR---------------RLKTELLIQMDG 338 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a---~~~~p~IL~IDEiD~L~~~r~~~~~~~~--~~~---------------~i~~~Ll~~ld~ 338 (487)
++.|+++. +..+|..+ +...|+||||||+|.+++++........ ... ++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999987 89999998 7788999999999999987754321100 000 122335555542
Q ss_pred C-cCCCCcEEEEEEeCCCCcccHHHHh--hccc--cccCCCC--CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 339 L-TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 339 ~-~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~--~i~~~~P--d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
. ...+..++|++|||.++.+|++++| ||+. .++++.| +.++|.+|++.+.. .+++.++..+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 2 1234556677999999999999876 9988 5566777 44778877766542 268888999999 9
Q ss_pred HHHHHHHHH
Q 011400 412 SDIRLVSKE 420 (487)
Q Consensus 412 ~dI~~L~~~ 420 (487)
+||.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999854
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2.4e-21 Score=193.25 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=161.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcC----CCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccc
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 275 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~----~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~~ 275 (487)
.+|+|++.+|+.|.+.+..+.. +..+.. ...++.++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 4799999999999998876542 222211 12455689999999999999999999988 34899999999
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+.+.+.|.....+..+|..+ .++||||||+|.+...+++ ......+++.|+..++.. ...+++|+++|.+
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~ 179 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN---RDDLVVILAGYAD 179 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC---CCCEEEEEeCChH
Confidence 99999999998888888776 3589999999999755332 112345667788888742 3346778888765
Q ss_pred C-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCC-CHHHHHHHh-------cCCcHHHHHHHHHHHH
Q 011400 356 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-------EGYSGSDIRLVSKEAA 422 (487)
Q Consensus 356 ~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~-~l~~la~~t-------~G~sg~dI~~L~~~A~ 422 (487)
. .+++++++||+..+.|+.|+.+++..|++.++.......+. .++.++... ..-+++++..+++.|.
T Consensus 180 ~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 3 25789999999999999999999999999998765443222 244455552 2245899999999999
Q ss_pred hHHHHHHHH
Q 011400 423 MQPLRRLMV 431 (487)
Q Consensus 423 ~~a~rr~~~ 431 (487)
..+..|...
T Consensus 260 ~~~~~r~~~ 268 (309)
T 3syl_A 260 LRQANRLFT 268 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887664
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.84 E-value=1.3e-21 Score=211.39 Aligned_cols=267 Identities=18% Similarity=0.148 Sum_probs=169.8
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcHHHHHHHHHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCC
Q 011400 159 TCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~ 238 (487)
+....+.+++++.....||......... .......-+++++|++++++.+.+.+.........
T Consensus 44 ~~e~~~~~~~l~~~~~lp~~~~~~~~~~-----------~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------ 106 (543)
T 3m6a_A 44 SAESSVIRNYIDWLVALPWTDETDDKLD-----------LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL------ 106 (543)
T ss_dssp CTTTTHHHHHHHHHHHSCSSCCCCCCCC-----------TTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------
T ss_pred CchHhHHHHHHHHHhcCCCCcccccccc-----------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC------
Confidence 3456678888888888777554322111 01112223578999999999998877654432221
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh---------hccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
++.+++|+||||||||++|+++|..++.++..+++..+.. .|.|.....+...|..+....| ||||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 5668999999999999999999999999999999877543 4566666677777777766665 99999999
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC------------CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCH
Q 011400 310 AIISQRGEARSEHEASRRLKTELLIQMDGLTQS------------DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 377 (487)
Q Consensus 310 ~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~------------~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~ 377 (487)
.+..+++. ...+.|+..++..... ...++||+|||.++.++++|++||. .+.++.|+.
T Consensus 186 ~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 186 KMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp SCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred hhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 99765321 1344577777643211 1457899999999999999999995 689999999
Q ss_pred HHHHHHHHHhCCC-----CCCC---CCCC---HHHHHHHhcC-CcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 011400 378 EARRAMFESLLPS-----QTGE---ESLP---YDLLVERTEG-YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445 (487)
Q Consensus 378 eeR~~IL~~~l~~-----~~~~---~~~~---l~~la~~t~G-~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~ 445 (487)
+++..|++.++.. .... ...+ +..++....+ ...++|+..+..+...+..+... . .
T Consensus 256 ~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~---~---------~ 323 (543)
T 3m6a_A 256 IEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA---E---------E 323 (543)
T ss_dssp HHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT---T---------C
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHh---c---------C
Confidence 9999999988622 1111 1112 3444443332 33455555555444444333321 0 0
Q ss_pred CCCCCCCHHHHHHHHhccCC
Q 011400 446 PQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 446 ~~~~~It~eD~~~AL~~~~p 465 (487)
.....||.+|+.+++...+.
T Consensus 324 ~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 324 RKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp CSCCEECTTTTHHHHCSCCS
T ss_pred CcceecCHHHHHHHhCCccc
Confidence 12245899999999986554
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=7e-20 Score=187.12 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=154.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccchhh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSK 279 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--~~i~v~~~~l~~~ 279 (487)
|...|++++|.+.+++.+..+..... ....+++++||+||||||||++|+++|++++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 45559999999999998776553321 12235679999999999999999999999974 7888887664332
Q ss_pred cc-------------------------------------------------CCcHHHHHHHHHHHHh----c-----CCc
Q 011400 280 WR-------------------------------------------------GDSEKLIKVLFELARH----H-----APS 301 (487)
Q Consensus 280 ~~-------------------------------------------------g~se~~l~~~f~~a~~----~-----~p~ 301 (487)
+. |.....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 22 2222334444443322 1 267
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEe-----------CCCCcccHHHHhhccccc
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI 370 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatT-----------n~p~~Ld~aL~rRf~~~i 370 (487)
||||||+|.+.. ...+.|+..++.. ...++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998842 2344566666632 2235454443 3467899999999977 8
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCC
Q 011400 371 LVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG 449 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~ 449 (487)
.+++|+.+++.++++..+....... +..++.+++.+.+.+++++..+++.|...+..+ ...
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------------~~~ 316 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------------KGT 316 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------------------TCS
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------------------CCC
Confidence 9999999999999998876544332 233677888888667889999999888776542 114
Q ss_pred CCCHHHHHHHHhccC
Q 011400 450 PIRPEDVEIALKNTR 464 (487)
Q Consensus 450 ~It~eD~~~AL~~~~ 464 (487)
.||.+|+.+++..+.
T Consensus 317 ~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 317 EVQVDDIKRVYSLFL 331 (368)
T ss_dssp SBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHhc
Confidence 599999999999743
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=4.4e-20 Score=183.44 Aligned_cols=180 Identities=22% Similarity=0.324 Sum_probs=130.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCC--CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~--~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~ 283 (487)
++++|++.+++.+...+..+.....+.... ...+.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 579999999999999886643332221111 135678999999999999999999999999999999988865 45543
Q ss_pred c-HHHHHHHHHHH-----HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC-------CCCcEEEEE
Q 011400 284 S-EKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 350 (487)
Q Consensus 284 s-e~~l~~~f~~a-----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------~~~~VlVIa 350 (487)
. ...++.++..+ ....++||||||+|.+........ .......+.+.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 2 34455555422 112358999999999987643222 222334456778888885421 123466777
Q ss_pred E----eCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHh
Q 011400 351 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 387 (487)
Q Consensus 351 t----Tn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~ 387 (487)
+ ++.+..+++++++||+..+.++.|+.+++.+|++..
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhh
Confidence 7 456788999999999988999999999999999853
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=3.9e-19 Score=179.76 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=154.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
.+.....+.+|++++|.+.+++.+...+...... ..++.++||+||||||||++|+++|++++.+++.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 3445566778999999999999999988654321 134568999999999999999999999999999999876
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------------
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------------- 341 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~-------------- 341 (487)
+. ....+...+.. ...+++|||||+|.+... ....|+..++....
T Consensus 91 ~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 149 (338)
T 3pfi_A 91 IE------KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIK 149 (338)
T ss_dssp CC------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCC
T ss_pred cc------chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCcccccee
Confidence 63 22333333332 245689999999988532 33445555553220
Q ss_pred -CCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 342 -SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 342 -~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
....+.+|++||....+++++++||+..+.++.|+.+++..+++..+....... +..++.++..+.|. .+++..+++
T Consensus 150 ~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~ 228 (338)
T 3pfi_A 150 IDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLK 228 (338)
T ss_dssp CCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHH
T ss_pred cCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHH
Confidence 112378899999999999999999988899999999999999998876544322 22355667755554 466666666
Q ss_pred HHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 420 EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 420 ~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.+...+... ....|+.+++..++.....+
T Consensus 229 ~~~~~a~~~------------------~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 229 RVRDFADVN------------------DEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHT------------------TCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHhh------------------cCCccCHHHHHHHHHHhCCc
Confidence 654332210 01236677777766655433
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=6.9e-19 Score=173.00 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=130.1
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCCc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGDS 284 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~s 284 (487)
.+.++|.+...+.+........ ..+......++.++||+||||||||++|+++|++++.+++.+++++... ...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3567887776666655311100 0000111356689999999999999999999999999999998875321 111122
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH-HHH
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 363 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~-aL~ 363 (487)
...++.+|..+....+++|||||+|.+.+.+.... .....+++.|...+++.......++||+|||.++.+++ .++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677888888777789999999999976543211 12245666677777766556667889999999988888 678
Q ss_pred hhccccccCCCCCH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCC
Q 011400 364 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGY 409 (487)
Q Consensus 364 rRf~~~i~~~~Pd~-eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~ 409 (487)
+||...+.+|.++. ++...++... ... .+..+..+++.+.||
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCC
Confidence 89988888876654 4444444442 111 233456667777765
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=1.4e-18 Score=178.07 Aligned_cols=244 Identities=19% Similarity=0.262 Sum_probs=157.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhh---cCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-ccCC
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 283 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~---~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~-~~g~ 283 (487)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999999885443222211 1122467899999999999999999999999999999999988743 6766
Q ss_pred c-HHHHHHHHHHH----HhcCCcEEEechhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCcC----------------
Q 011400 284 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQ---------------- 341 (487)
Q Consensus 284 s-e~~l~~~f~~a----~~~~p~IL~IDEiD~L~~~r~~~~~~-~~~~~~i~~~Ll~~ld~~~~---------------- 341 (487)
. ...+..++..+ ....++||||||+|.+...+...... ......+.+.|+..|++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 45666676654 33456899999999998775543322 22334588899999984310
Q ss_pred --CCCcEEEEEEeCCC----------Cc-----------------------------------ccHHHHhhccccccCCC
Q 011400 342 --SDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 374 (487)
Q Consensus 342 --~~~~VlVIatTn~p----------~~-----------------------------------Ld~aL~rRf~~~i~~~~ 374 (487)
...++++|++++.. .. +.++|++||+.++.+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11234455555532 01 68899999999999999
Q ss_pred CCHHHHHHHHHHhCCC-----------CCCC---CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 375 PDTEARRAMFESLLPS-----------QTGE---ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 375 Pd~eeR~~IL~~~l~~-----------~~~~---~~~~l~~la~~--t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
|+.+++.+|+...+.. .... .+..++.|++. ...+..++|++++.++...++.+.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~--------- 326 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL--------- 326 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc---------
Confidence 9999999999872211 1111 11123445542 233445677777766665554432
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhc
Q 011400 439 VAPDDELPQIGPIRPEDVEIALKN 462 (487)
Q Consensus 439 ~~~~d~~~~~~~It~eD~~~AL~~ 462 (487)
+.........|+.+++++.+..
T Consensus 327 --~~~~~~~~~~I~~~~v~~~~~~ 348 (363)
T 3hws_A 327 --PSMEDVEKVVIDESVIDGQSEP 348 (363)
T ss_dssp --TTCCCSEEEECHHHHTTCCSCC
T ss_pred --ccccCCceeEEcHHHHhCcCCc
Confidence 1111112235788887776643
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=1.1e-17 Score=175.49 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=133.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCC--CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh-hccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLL--SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~--~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~-~~~g~ 283 (487)
++|+|++++|+.|..++..+..++..+.... .+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5799999999999999988766666554432 35689999999999999999999999999999999998887 58885
Q ss_pred -cHHHHHHHHHHHH------------------------------------------------------------------
Q 011400 284 -SEKLIKVLFELAR------------------------------------------------------------------ 296 (487)
Q Consensus 284 -se~~l~~~f~~a~------------------------------------------------------------------ 296 (487)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 6666666554431
Q ss_pred -------------------------------------------------------------------------hcCCcEE
Q 011400 297 -------------------------------------------------------------------------HHAPSTI 303 (487)
Q Consensus 297 -------------------------------------------------------------------------~~~p~IL 303 (487)
....++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0023489
Q ss_pred EechhhhHHhhhcccchhhHHH-HHHHHHHHHHhcCCcC-------CCCcEEEEEEe----CCCCcccHHHHhhcccccc
Q 011400 304 FLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 371 (487)
Q Consensus 304 ~IDEiD~L~~~r~~~~~~~~~~-~~i~~~Ll~~ld~~~~-------~~~~VlVIatT----n~p~~Ld~aL~rRf~~~i~ 371 (487)
++||+|+++.+... ...+.+ .-++..||..+++... ....|++|+|. +.|.++-+.|++||..++.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865331 122222 3477789999997421 23557888887 3455566889999999999
Q ss_pred CCCCCHHHHHHHHH
Q 011400 372 VPLPDTEARRAMFE 385 (487)
Q Consensus 372 ~~~Pd~eeR~~IL~ 385 (487)
++.++.++..+|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999994
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.76 E-value=1.3e-17 Score=176.08 Aligned_cols=217 Identities=21% Similarity=0.241 Sum_probs=140.7
Q ss_pred hcCCCCCCCCcccCcHHHH---HHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 198 IRGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 198 ~~~~~~~~~~di~G~e~~k---~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
.....+.+|++++|++.++ +.|...+... ...++||+||||||||++|++|++.++.+++.+++.
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~ 84 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV 84 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence 3345667899999999999 7777777542 226899999999999999999999999999999875
Q ss_pred cchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEE
Q 011400 275 SVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 350 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIa 350 (487)
.. ..+.++.++..+.. ..+.||||||+|.+.... .+.|+..++. .. +.+|+
T Consensus 85 ~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-------------q~~LL~~le~----~~-v~lI~ 139 (447)
T 3pvs_A 85 TS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-------------QDAFLPHIED----GT-ITFIG 139 (447)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TS-CEEEE
T ss_pred cC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-------------HHHHHHHHhc----Cc-eEEEe
Confidence 43 23445555555542 357899999999885432 2336666663 23 44555
Q ss_pred Ee--CCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC--------CCCCHHHHHHHhcCCcHHHHHHHHHH
Q 011400 351 AT--NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE--------ESLPYDLLVERTEGYSGSDIRLVSKE 420 (487)
Q Consensus 351 tT--n~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~--------~~~~l~~la~~t~G~sg~dI~~L~~~ 420 (487)
+| |....+++++++|+. ++.++.|+.++...+++..+...... .+..++.++..+.|. .+.+.+++..
T Consensus 140 att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd-~R~lln~Le~ 217 (447)
T 3pvs_A 140 ATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD-ARRALNTLEM 217 (447)
T ss_dssp EESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC-HHHHHHHHHH
T ss_pred cCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC-HHHHHHHHHH
Confidence 44 333579999999996 57899999999999999987652211 111234455554442 2333333333
Q ss_pred HHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCChhh
Q 011400 421 AAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 469 (487)
Q Consensus 421 A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps~~~ 469 (487)
+... ...+ ......||.+++.+++....+....
T Consensus 218 a~~~---------------a~~~-~~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 218 MADM---------------AEVD-DSGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp HHHH---------------SCBC-TTSCEECCHHHHHHHHTCCCCC---
T ss_pred HHHh---------------cccc-cCCCCccCHHHHHHHHhhhhhccCC
Confidence 2221 1100 0012459999999999987665443
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=5.7e-17 Score=151.56 Aligned_cols=204 Identities=18% Similarity=0.148 Sum_probs=137.9
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
...++..|++++|.+..++.|.+.+... ...+++|+||||||||++|+++++++ ...++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3456778999999999999999988542 22359999999999999999999986 456788877
Q ss_pred ccchhhccCCcHHHHHHHHHHHH------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEE
Q 011400 274 SSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 347 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~Vl 347 (487)
..... ...+...+.... ...+.+|+|||+|.+... ..+.|+..++.. ...+.
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~---~~~~~ 134 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMY---SKSCR 134 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEE
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHhc---CCCCe
Confidence 65422 122222222222 245789999999987532 123355555432 23466
Q ss_pred EEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011400 348 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 348 VIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~ 426 (487)
+|++||.+..+++++.+||. .+.+++|+.++..+++...+....... +..++.++..+.|. .+.+..+++.++..
T Consensus 135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l~~~l~~~~~~-- 210 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGAAAI-- 210 (226)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHHHT--
T ss_pred EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhc--
Confidence 78889999999999999997 799999999999999998875433321 12245566655553 23333333322211
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
. ..|+.+|+++++.
T Consensus 211 -------------~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 211 -------------G--------EVVDADTIYQITA 224 (226)
T ss_dssp -------------C--------SCBCHHHHHHHHH
T ss_pred -------------C--------ceecHHHHHHHhc
Confidence 0 2499999999986
No 41
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=1.1e-17 Score=167.77 Aligned_cols=195 Identities=18% Similarity=0.166 Sum_probs=138.1
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 279 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~ 279 (487)
...+.+|++++|.+.+++.+.+.+...... ..++.++||+||||||||++|++++++++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345668999999999999999887543211 124568999999999999999999999999999999877632
Q ss_pred ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------CCCC
Q 011400 280 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 344 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~---------------~~~~ 344 (487)
...+...+..+ ...+++|||||+|.+... ....|+..++... ....
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22222222220 145689999999987532 1223444444221 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
.+.+|++||.+..+++++++||...+.++.|+.+++..+++.++.......+ ..++.++..+.|. ++++..+++.+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHH
Confidence 4678899999999999999999888999999999999999998765443322 2356677777664 466666666554
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=4.5e-17 Score=171.63 Aligned_cols=223 Identities=16% Similarity=0.234 Sum_probs=146.1
Q ss_pred CCCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 011400 200 GSPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 271 (487)
Q Consensus 200 ~~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v 271 (487)
..+..+|++++ | ...+...+......+- . +++++|+||||||||+||+++++++ +.+++++
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~----------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPG----------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTT----------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCC----------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 34667899987 5 3344445554443321 1 4689999999999999999999988 8889999
Q ss_pred ecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
++.++...+.+.........|.......++||||||++.+..+. .....|+..++..... +..+|+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt 234 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICS 234 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 98887554433222111112322223367899999999986431 1112233343322222 23445555
Q ss_pred eCCCCc---ccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011400 352 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 352 Tn~p~~---Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~dI~~L~~~A~~~a 425 (487)
.+.+.. +++++++||. ..+.+++|+.++|..|++..+....... +..++.++..+.| +.+++..+++.+...+
T Consensus 235 ~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp SSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 455554 8899999996 6789999999999999999876444332 2336778887775 6678887777765543
Q ss_pred HHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCC
Q 011400 426 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 465 (487)
Q Consensus 426 ~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~p 465 (487)
... ...||.+++.++++...+
T Consensus 314 ~~~-------------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ETT-------------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHS-------------------SSCCCHHHHHHHTSTTTC
T ss_pred HHh-------------------CCCCCHHHHHHHHHHHhh
Confidence 210 124899999999988764
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=1.7e-18 Score=158.23 Aligned_cols=166 Identities=21% Similarity=0.340 Sum_probs=118.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------C
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------K 265 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~ 265 (487)
.+....++..|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++++ +
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 78 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 78 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 333444556799999999999999887643 235689999999999999999999987 7
Q ss_pred CcEEEEecccch--hhccCCcHHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 266 TTFFNISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 266 ~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
.+++.+++..+. ..+.+.....+..++..+. ...+.||+|||+|.+...+..... ..+.+.+...++ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~----~ 149 (195)
T 1jbk_A 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA----R 149 (195)
T ss_dssp CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH----T
T ss_pred CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc----c
Confidence 888999887765 3444556667777777554 345789999999999754321100 111222323332 1
Q ss_pred CCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 343 DELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 343 ~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
..+.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 150 -~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 2355777888775 68999999998 5899999999998775
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.73 E-value=1.3e-17 Score=167.79 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=118.0
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+...+++.+|++++|.+.+++.|..++... ..++.+|++||||||||++|+++|++++.+++++++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 344566778999999999999999988631 345678889999999999999999999999999998764
Q ss_pred hhhccCCcHHHHHHHHHHHHhc-----CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE
Q 011400 277 VSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 351 (487)
Q Consensus 277 ~~~~~g~se~~l~~~f~~a~~~-----~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat 351 (487)
. ...++..+...... .+.||||||+|.+.+. ...+.|+..++.. ...+.+|++
T Consensus 85 ~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~------------~~~~~L~~~le~~---~~~~~iI~~ 142 (324)
T 3u61_B 85 K-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA------------ESQRHLRSFMEAY---SSNCSIIIT 142 (324)
T ss_dssp C-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH------------HHHHHHHHHHHHH---GGGCEEEEE
T ss_pred C-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH------------HHHHHHHHHHHhC---CCCcEEEEE
Confidence 2 33444444433222 4689999999998511 1223455555532 233567889
Q ss_pred eCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 352 TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 352 Tn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
||.+..+++++++||. .+.++.|+.+++.+|++.++
T Consensus 143 ~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 143 ANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp ESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred eCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 9999999999999995 59999999999877765543
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=1.1e-16 Score=151.07 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=142.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
....+..|++++|.+..++.|.+.+... ..++.++|+||||||||+++++++++++..
T Consensus 15 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 15 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 3456667999999999999999887542 234579999999999999999999987432
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++... ......+..++..+. ...+.+|+|||+|.+.. ...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~ 144 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFN 144 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHH
T ss_pred HHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHH
Confidence 22222211 112233444444432 23468999999998732 1234
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~ 409 (487)
.|+..++.. ...+.+|++|+.+..+++++++|+ ..+.+++|+.++..++++.++....... +..++.+++.+.|
T Consensus 145 ~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 145 ALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp HHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred HHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 466666532 345678888998889999999997 5689999999999999998875443322 2236678888877
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 410 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 410 sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
.++.+..+++.|...+ ...||.+|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 220 SLRDALSLTDQAIASG----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp CHHHHHHHHHHHHTTT----------------------TSSBCHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcc----------------------CceecHHHHHHHhC
Confidence 6677777776653210 02599999999874
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.73 E-value=5.3e-17 Score=163.51 Aligned_cols=198 Identities=22% Similarity=0.229 Sum_probs=130.3
Q ss_pred CCCCCCCccc-C--cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 201 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 201 ~~~~~~~di~-G--~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
.+..+|++++ | ...+...+...+..+- ..+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4667899997 4 4556666666554421 235689999999999999999999998 8999999998
Q ss_pred cchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC
Q 011400 275 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 354 (487)
Q Consensus 275 ~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~ 354 (487)
++...+.+.........|.... ..+++|||||++.+..++. ....++..++..... +..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8765544333222112222222 2368999999999864311 111233333322222 23556666666
Q ss_pred CC---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011400 355 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 355 p~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~ 424 (487)
+. .+++++++||. ..+.+++ +.+++..|++..+.......+ ..++.++..+ | ..+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 58999999996 5688888 999999999998865443322 2356678887 4 456676666655443
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=1.7e-17 Score=176.20 Aligned_cols=195 Identities=21% Similarity=0.294 Sum_probs=135.8
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+...+++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 164 ~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p 231 (468)
T 3pxg_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (468)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCC
Confidence 34455566666777899999999999999988754 234689999999999999999999997
Q ss_pred ----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 265 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 265 ----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
+.+++.++++ ..|.|..+..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 232 ~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~--- 288 (468)
T 3pxg_A 232 EILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA--- 288 (468)
T ss_dssp TTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT---
T ss_pred hhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc---
Confidence 7889998887 67788888889999999998889999999 10 011222333332
Q ss_pred CCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-----CCHHHHHHHhcCCc
Q 011400 341 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-----LPYDLLVERTEGYS 410 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-----~~l~~la~~t~G~s 410 (487)
.+.+.+|++||.+. .+++++++||.. +.++.|+.+++..|++.++........ ..+..++..+.+|.
T Consensus 289 --~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 23477888998886 589999999975 999999999999999998876432222 22455666666554
Q ss_pred -----HHHHHHHHHHHHh
Q 011400 411 -----GSDIRLVSKEAAM 423 (487)
Q Consensus 411 -----g~dI~~L~~~A~~ 423 (487)
+...-.++.+|+.
T Consensus 366 ~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 366 SDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp CCSCTTHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHH
Confidence 3355566666553
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=2.5e-16 Score=160.53 Aligned_cols=227 Identities=20% Similarity=0.176 Sum_probs=152.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNIS 272 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~ 272 (487)
+....++++|.+..++.|...+...+. ...+.+++|+||||||||++++++++++ +.+++.++
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 344458999999999999987744321 1345689999999999999999999988 78899999
Q ss_pred cccchhh----------------ccCCcH-HHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011400 273 ASSVVSK----------------WRGDSE-KLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 334 (487)
Q Consensus 273 ~~~l~~~----------------~~g~se-~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~ 334 (487)
+....+. ..|... ..+..++...... .|++|+|||+|.+...+ .....+..++.
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~ 157 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITR 157 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhh
Confidence 8754321 112222 3344455444333 37799999999996532 01234444555
Q ss_pred HhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCC--CCCC-CCCCHHHHHHHhc
Q 011400 335 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE 407 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~--~~~~-~~~~l~~la~~t~ 407 (487)
.++.... ...+.+|++||.+ ..+++++++||.. .+.+++|+.++..++++..+.. .... .+..++.+++.+.
T Consensus 158 ~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 158 INQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 4443211 3456788888887 6789999999975 7999999999999999988653 1111 2333667777777
Q ss_pred ---CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 ---GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 ---G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|. ++.+..+++.|+..+..+ ....|+.+|+.+++....
T Consensus 237 ~~~G~-~r~~~~~l~~a~~~a~~~------------------~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 237 REHGD-ARRALDLLRVAGEIAERR------------------REERVRREHVYSARAEIE 277 (387)
T ss_dssp SSSCC-HHHHHHHHHHHHHHHHHT------------------TCSCBCHHHHHHHHHHHH
T ss_pred HhccC-HHHHHHHHHHHHHHHHHc------------------CCCCcCHHHHHHHHHHHh
Confidence 64 455667777775543321 113488999998887764
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=1.3e-16 Score=151.80 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=136.9
Q ss_pred CCCCCCcccC---cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 202 PDVKWESIKG---LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G---~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
+..+|++++| .+.+.+.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3467999987 34667777666543 235789999999999999999999987 47888999887
Q ss_pred chhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 276 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 276 l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
+....... +. ....+.+|+|||+|.+..... ....|+..++.........+|++++..+
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCCHH-----------HHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 76543211 11 113468999999998854310 1122333333222222222444444444
Q ss_pred C---cccHHHHhhcc--ccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011400 356 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 429 (487)
Q Consensus 356 ~---~Ld~aL~rRf~--~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~ 429 (487)
. .+++++.+||. ..+.++.|+.+++.+++..++.......+ ..++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999996 77999999999999999998864443222 235667777765 5667777777666554321
Q ss_pred HHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 430 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 430 ~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...||.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 13489999999986
No 50
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=5.7e-17 Score=166.82 Aligned_cols=246 Identities=17% Similarity=0.217 Sum_probs=144.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchh------------------hcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~------------------~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
+.|+|++.+|+.|...+..+..+... ......++.++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46899999999999888543322211 112234567899999999999999999999999999
Q ss_pred EEEecccch-hhccCCc-HHHHHHHHHHHH----hcCCcEEEechhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCCc-
Q 011400 269 FNISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT- 340 (487)
Q Consensus 269 i~v~~~~l~-~~~~g~s-e~~l~~~f~~a~----~~~p~IL~IDEiD~L~~~r~~~~~~~~-~~~~i~~~Ll~~ld~~~- 340 (487)
+.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+........ ....+.+.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 444555554322 235689999999999876432111111 11236778888888531
Q ss_pred ---C--------------CCCcEEEEEEeCC-----------------------------------------CCcccHHH
Q 011400 341 ---Q--------------SDELVFVLAATNL-----------------------------------------PWELDAAM 362 (487)
Q Consensus 341 ---~--------------~~~~VlVIatTn~-----------------------------------------p~~Ld~aL 362 (487)
. ....+++|+++|. ...+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 0 0133566777762 01256788
Q ss_pred HhhccccccCCCCCHHHHHHHHHHhCCCC-----------CCC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHH
Q 011400 363 LRRLEKRILVPLPDTEARRAMFESLLPSQ-----------TGE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPL 426 (487)
Q Consensus 363 ~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-----------~~~---~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~ 426 (487)
++||+.++.+++++.++...|+...+... ... .+..++.+++... ....+.+..++..+...++
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~ 340 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIM 340 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHH
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 88998889999999999999887422110 000 1111344444432 2344566666655555444
Q ss_pred HHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 427 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 427 rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.+... . ......||.+++.++++.+.
T Consensus 341 ~~~~~---~---------~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 341 FDLPK---L---------KGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HTGGG---G---------TTSEEEECHHHHTTSSCCEE
T ss_pred hhccC---C---------CCCEEEEeHHHhcCCCCcee
Confidence 33211 0 01123589999988665543
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=7.9e-17 Score=160.47 Aligned_cols=208 Identities=22% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
.++++|.+.+++.+...+....... .....|..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3578999999999998885542110 1112345689999999999999999999998 567999998776432
Q ss_pred --cc-------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------C
Q 011400 280 --WR-------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 342 (487)
Q Consensus 280 --~~-------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 342 (487)
.. |... ...+........++||||||+|.+.. .+.+.|+..++.... .
T Consensus 93 ~~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEE
T ss_pred HHhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEE
Confidence 11 1110 01222333344458999999998743 244556666653321 1
Q ss_pred CCcEEEEEEeCC--------------------------CCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----
Q 011400 343 DELVFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 392 (487)
Q Consensus 343 ~~~VlVIatTn~--------------------------p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~---- 392 (487)
-..+++|+|||. ...+++++++||+..+.+++|+.+++..|++.++....
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 135678899998 34678899999998899999999999999999875421
Q ss_pred ---CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHHH
Q 011400 393 ---GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLMV 431 (487)
Q Consensus 393 ---~~---~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr~~~ 431 (487)
.. .+..++.+++..- ..+.++|..+++.+...++.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 11 1122455666544 567889999999988887776553
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=9.2e-17 Score=179.91 Aligned_cols=228 Identities=23% Similarity=0.285 Sum_probs=157.9
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 270 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~ 270 (487)
..+.+|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +..++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 3445799999999999999887743 245789999999999999999999987 667888
Q ss_pred Eecccch--hhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 271 ISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 271 v~~~~l~--~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
++...+. .++.|..+..++.++..+....++||||||+|.+.+........ .... ..+....... .+.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~----~~L~~~l~~~-~~~~ 318 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAA----NLIKPLLSSG-KIRV 318 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHH----HHHSSCSSSC-CCEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHH----HHHHHHHhCC-CeEE
Confidence 8887776 46788999999999999988788999999999998654321111 1122 2233332333 4567
Q ss_pred EEEeCCC-----CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----CC-CCCCHHHHHHHhcC-----CcHHH
Q 011400 349 LAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERTEG-----YSGSD 413 (487)
Q Consensus 349 IatTn~p-----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~----~~-~~~~l~~la~~t~G-----~sg~d 413 (487)
|++|+.+ ..+|+++.+||. .+.++.|+.+++.+|++.++.... .. .+..++.++..+.+ +.+..
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 7788764 357889999998 599999999999999998764321 11 11224556665554 34556
Q ss_pred HHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 414 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 414 I~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
+..++.+|+... +. . +. ......|+.+|+.+++..+.
T Consensus 398 ~i~lld~a~~~~--~~----~------~~--~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 398 AIDVIDEAGARA--RL----M------PV--SKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHH--HH----S------SS--CCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH--hc----c------cc--cccCCccCHHHHHHHHHHhc
Confidence 666777665321 11 0 00 01124589999999998864
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.69 E-value=5.5e-16 Score=156.43 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=107.3
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch--hhccCC
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--SKWRGD 283 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~--~~~~g~ 283 (487)
+++++|.+.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... ....|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 68999999999998877643 25799999999999999999999999999998874211 111110
Q ss_pred cH-HHHHHHHHHHHhcC---CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cCCCCcEEEEEE
Q 011400 284 SE-KLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFVLAA 351 (487)
Q Consensus 284 se-~~l~~~f~~a~~~~---p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~~~~~VlVIat 351 (487)
.. ......+ ..... .+||||||+|.+.+. ..+.|+..++.. ...+..++||+|
T Consensus 92 ~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 92 MIYNQHKGNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEETTTTEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred eeecCCCCce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 00 0000000 00111 279999999987432 233455555421 112334667788
Q ss_pred eCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 352 TNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 352 Tn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
+|... .+++++++||...+.++.|+.+++.+|++..+..
T Consensus 157 ~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88543 3899999999888999999999999999988754
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=7e-17 Score=181.02 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=136.0
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+...+++.......++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 164 ~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p 231 (758)
T 3pxi_A 164 DSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (758)
T ss_dssp HSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCC
Confidence 34455666666777899999999999999988754 234689999999999999999999997
Q ss_pred ----CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 265 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 265 ----~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
+.+++.+++ ..+|.|+.+..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 232 ~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~--- 288 (758)
T 3pxi_A 232 EILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA--- 288 (758)
T ss_dssp TTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT---
T ss_pred hhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh---
Confidence 788888887 566888899999999999999899999999 00 011222333332
Q ss_pred CCCCcEEEEEEeCCCC-----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC-----HHHHHHHhc---
Q 011400 341 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-----YDLLVERTE--- 407 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~-----l~~la~~t~--- 407 (487)
.+.+.+|++||... .+|+++++||. .+.++.|+.+++.+||+.++.......... +..++..+.
T Consensus 289 --~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 289 --RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp --SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred --cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 23477888888887 69999999995 599999999999999998876643322222 444555443
Q ss_pred --CCcHHHHHHHHHHHHh
Q 011400 408 --GYSGSDIRLVSKEAAM 423 (487)
Q Consensus 408 --G~sg~dI~~L~~~A~~ 423 (487)
++.+.....++.+|+.
T Consensus 366 ~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 366 SDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp CCSCTTHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHH
Confidence 4455666666666654
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=8.3e-16 Score=155.47 Aligned_cols=216 Identities=14% Similarity=0.123 Sum_probs=142.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC------CcEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFF 269 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~------~~~i 269 (487)
.+...+++.+|++++|.+++++.|...+... ...++||+||||||||++|+++++.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 3444567788999999999999998887431 123499999999999999999999864 4678
Q ss_pred EEecccchhhccCCcHHHHHHHHHHHH----------------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 270 NISASSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 270 ~v~~~~l~~~~~g~se~~l~~~f~~a~----------------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
.+++++..+ ...++..+.... ...+.||+|||+|.+... ..+.|+
T Consensus 94 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll 154 (353)
T 1sxj_D 94 ELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALR 154 (353)
T ss_dssp EECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHH
T ss_pred EEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHH
Confidence 888766421 111222111111 123469999999988543 223466
Q ss_pred HHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHH
Q 011400 334 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGS 412 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~ 412 (487)
..++... ....+|.++|.+..+++++++|+. .+.+++|+.++...+++..+....... +..++.+++.+.|...
T Consensus 155 ~~le~~~---~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r- 229 (353)
T 1sxj_D 155 RTMETYS---GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLR- 229 (353)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHH-
T ss_pred HHHHhcC---CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHH-
Confidence 6665332 234566788999999999999996 689999999999999998875444322 2336677787776533
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
.+.++++.++..+-+. . ....||.+|+.+++....
T Consensus 230 ~~~~~l~~~~~~~~~~---------~--------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 230 RGITLLQSASKGAQYL---------G--------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHHHTHHHHHHH---------C--------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCC---------c--------cCccccHHHHHHHhCCCC
Confidence 3334444443321110 0 001478888888877543
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=1.9e-16 Score=169.98 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=127.1
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccC-chhhcCC----CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~-~~~~~~~----~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.+.+++.+|++++|.+.+++.|.+++...... +..+... ..+++++||+||||||||++|+++|++++.+++.
T Consensus 28 lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 28 LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4555677789999999999999999998653221 1112211 1256799999999999999999999999999999
Q ss_pred EecccchhhccCCcH-------HHHHHHHHHH-----HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011400 271 ISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 338 (487)
Q Consensus 271 v~~~~l~~~~~g~se-------~~l~~~f~~a-----~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~ 338 (487)
++++++......... ..+..+|..+ ....++||||||+|.+..... ..+..|+..++.
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~ 177 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRK 177 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHHH
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHHh
Confidence 999886543211000 0011222222 124578999999999865421 112334444442
Q ss_pred CcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHhcCC
Q 011400 339 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGY 409 (487)
Q Consensus 339 ~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~-~~~~l~~la~~t~G~ 409 (487)
....+++++++.....+. ++++|+ ..+.|+.|+.+++.+++...+...... .+..++.+++.+.|-
T Consensus 178 ---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 178 ---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp ---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC
T ss_pred ---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 223344444333333444 355555 579999999999999998876543332 233467788777653
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.68 E-value=3.8e-16 Score=157.95 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=101.8
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T------ 267 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~-------~------ 267 (487)
.++.+|++++|.+.+++.+......+ ...++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46778999999999888765544321 2246999999999999999999998863 1
Q ss_pred --------------------EEEEecccchhhccCCcHHHHHHHHHHH---------HhcCCcEEEechhhhHHhhhccc
Q 011400 268 --------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGEA 318 (487)
Q Consensus 268 --------------------~i~v~~~~l~~~~~g~se~~l~~~f~~a---------~~~~p~IL~IDEiD~L~~~r~~~ 318 (487)
++.+..........|... +...+... ....+++|||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 221111111111111100 01111111 1113589999999988533
Q ss_pred chhhHHHHHHHHHHHHHhcC----CcC------CCCcEEEEEEeCCCC-cccHHHHhhccccccCCCC-CHHHHHHHHHH
Q 011400 319 RSEHEASRRLKTELLIQMDG----LTQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFES 386 (487)
Q Consensus 319 ~~~~~~~~~i~~~Ll~~ld~----~~~------~~~~VlVIatTn~p~-~Ld~aL~rRf~~~i~~~~P-d~eeR~~IL~~ 386 (487)
..+.|+..++. +.. ....+++|+++|... .+++++++||...+.++.| +.+++.+|++.
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 23345555542 111 112578889999754 7999999999888999998 67788788877
Q ss_pred h
Q 011400 387 L 387 (487)
Q Consensus 387 ~ 387 (487)
.
T Consensus 231 ~ 231 (350)
T 1g8p_A 231 R 231 (350)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.68 E-value=9.9e-16 Score=156.69 Aligned_cols=213 Identities=20% Similarity=0.180 Sum_probs=142.6
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEecc
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 274 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----------~~~~i~v~~~ 274 (487)
.++++|.+..++.|.+.+...... ..+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 488999999999999887553321 345689999999999999999999988 8899999976
Q ss_pred cch-hh-----------------ccCC-cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHH-HHHHHH
Q 011400 275 SVV-SK-----------------WRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 334 (487)
Q Consensus 275 ~l~-~~-----------------~~g~-se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i-~~~Ll~ 334 (487)
... .. ..+. ....+..++..+....+ ||+|||+|.+..... ... +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhc
Confidence 543 11 0111 13334555554544444 999999999965321 011 222322
Q ss_pred HhcCCcCCCCcEEEEEEeCCC---CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC---CCCCCCCHHHHHHHhc-
Q 011400 335 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERTE- 407 (487)
Q Consensus 335 ~ld~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~---~~~~~~~l~~la~~t~- 407 (487)
. . ..+.+|++||.+ ..+++++++||...+.+++|+.++..++++..+... ....+..++.+++.+.
T Consensus 161 ~----~---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 161 S----D---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S----S---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C----C---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 1 457788888887 678999999997789999999999999999876421 1112223556666666
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 --G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|. .+.+..+++.|+..+. ....|+.+|+.+++....
T Consensus 234 ~~G~-~r~a~~~l~~a~~~a~--------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGD-ARKAVNLLFRAAQLAS--------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCC-HHHHHHHHHHHHHHTT--------------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCC-HHHHHHHHHHHHHHhc--------------------CCCccCHHHHHHHHHHHh
Confidence 32 2333344444432211 113489999999888764
No 59
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.67 E-value=4.6e-17 Score=148.60 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=109.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 272 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~ 272 (487)
+..|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45699999999999998887743 234689999999999999999999987 77888888
Q ss_pred cccchh--hccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 273 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 273 ~~~l~~--~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+...... ..+.+.|...++. ..+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~~-----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLAR-----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHHT-----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHhc-----CCeeEE
Confidence 877653 24455566677777776654 67899999999997543211111 1122223333331 335677
Q ss_pred EEeCCCC-----cccHHHHhhccccccCCCCC
Q 011400 350 AATNLPW-----ELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 350 atTn~p~-----~Ld~aL~rRf~~~i~~~~Pd 376 (487)
+++|.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888764 589999999985 8888885
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.66 E-value=3.5e-16 Score=155.62 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=124.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 271 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v 271 (487)
+...+++.+|++++|.+.+++.|...+... .. .++||+||||||||++|+++++.+ +.+++.+
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK-----------NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTTT-----------CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhCC-----------CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 445667788999999999999998876431 12 349999999999999999999986 3467888
Q ss_pred ecccchhhccCCcHHHHHHHHHHHH--hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEE
Q 011400 272 SASSVVSKWRGDSEKLIKVLFELAR--HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 349 (487)
Q Consensus 272 ~~~~l~~~~~g~se~~l~~~f~~a~--~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVI 349 (487)
++++..+. ......+..+..... ...+.||+|||+|.+... ..+.|+..++. ....+.+|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 75 NASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp ETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEE
T ss_pred eCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 88764321 122222222221100 134689999999988532 22335555553 33456788
Q ss_pred EEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 350 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 350 atTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
++||.+..+.+++++|+. .+.+++|+.++...++...+.......+ ..++.++..+.|
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 889999999999999996 6999999999999999988765443322 224455555554
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=3.9e-15 Score=151.44 Aligned_cols=225 Identities=18% Similarity=0.176 Sum_probs=148.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------CCcEEEEeccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------~~~~i~v~~~~ 275 (487)
+....++++|.+...+.|.+.+...+. ...+..++|+||||||||++++++++.+ +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 445568999999999999987754321 1345689999999999999999999988 88899998754
Q ss_pred chhh----------------ccCC-cHHHHHHHHHHHHhcC-CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 276 VVSK----------------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 276 l~~~----------------~~g~-se~~l~~~f~~a~~~~-p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ..+. .......++....... |.||+|||++.+..... ...+..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 3211 1122 2233445555554443 88999999999975421 123445666665
Q ss_pred CCcCCCCcEEEEEEeCCC---CcccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHhc---
Q 011400 338 GLTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLLVERTE--- 407 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p---~~Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~~~~~---~~~~l~~la~~t~--- 407 (487)
.. ....+.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+++...+...... .+..++.+++.+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 23457778888877 457888999985 379999999999999999876422111 1122455666666
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 408 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 408 G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
|.. +.+..+++.++..+..+ ....|+.+|+..|+....
T Consensus 236 G~~-r~~~~ll~~a~~~a~~~------------------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 236 GDA-RRALDLLRVSGEIAERM------------------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CCH-HHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHhc------------------CCCccCHHHHHHHHHHHh
Confidence 544 44455677665443321 113478888888777654
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.4e-15 Score=151.44 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=127.5
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 273 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~ 273 (487)
...++..|++++|.+.+++.|...+... ..+ +++|+||||+|||++|+++++.+ +..++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3456778999999999999999987531 223 39999999999999999999986 355788877
Q ss_pred ccchhhccCCcHHHHHHHHHHHH-------hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcE
Q 011400 274 SSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 346 (487)
Q Consensus 274 ~~l~~~~~g~se~~l~~~f~~a~-------~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~V 346 (487)
++.. ....++.++.... ...+.||+|||+|.+... ..+.|+..++. ....+
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~ 138 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNST 138 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCc
Confidence 6532 1334444454443 223689999999988532 12335555552 22345
Q ss_pred EEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCCcHHH
Q 011400 347 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 347 lVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~sg~d 413 (487)
.+|++||.+..+.+++++|+. .+.+++|+.++..++++..+....... +..++.+++.+.|.....
T Consensus 139 ~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a 205 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA 205 (323)
T ss_dssp EEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred eEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 677788889999999999996 699999999999999998775433321 223566777777654433
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=1e-16 Score=181.91 Aligned_cols=211 Identities=18% Similarity=0.251 Sum_probs=137.8
Q ss_pred HHHhhhhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------
Q 011400 191 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------ 264 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------ 264 (487)
+++.+++.....+.+|++++|.+...+.+.+.+.. ...++++|+||||||||++|+++|+.+
T Consensus 154 ~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p 221 (854)
T 1qvr_A 154 EQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP 221 (854)
T ss_dssp HHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCc
Confidence 35556666666677899999999999998887743 234679999999999999999999988
Q ss_pred ----CCcEEEEecccch--hhccCCcHHHHHHHHHHHHhc-CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 265 ----KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 265 ----~~~~i~v~~~~l~--~~~~g~se~~l~~~f~~a~~~-~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+.....+ ...+.+.|...++
T Consensus 222 ~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~ 296 (854)
T 1qvr_A 222 EGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA 296 (854)
T ss_dssp TTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH
T ss_pred hhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh
Confidence 8899999998886 568889999999999988875 688999999999986543211 1222333444443
Q ss_pred CCcCCCCcEEEEEEeCCCC----cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-----CCCHHHHHHHhc-
Q 011400 338 GLTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-----SLPYDLLVERTE- 407 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~----~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-----~~~l~~la~~t~- 407 (487)
. ..+.+|++||.++ .+++++.+||.. +.++.|+.+++.+|++.++....... +..+..++..+.
T Consensus 297 ----~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 297 ----R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp ----T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred ----C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 1 2355778888764 478999999986 99999999999999987765332111 122444555543
Q ss_pred ----CCcHHHHHHHHHHHHhH
Q 011400 408 ----GYSGSDIRLVSKEAAMQ 424 (487)
Q Consensus 408 ----G~sg~dI~~L~~~A~~~ 424 (487)
.|.+.....++.+|+..
T Consensus 371 ~i~~~~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 371 YITERRLPDKAIDLIDEAAAR 391 (854)
T ss_dssp HCCSSCTHHHHHHHHHHHHHH
T ss_pred hcccccChHHHHHHHHHHHHH
Confidence 45566666666666543
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=1.4e-14 Score=146.98 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=145.6
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchh
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 278 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~ 278 (487)
......+|++++|.+.+++.+...+...... ..++.+++|+||||||||||++++|++++.++...++..+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3445567999999999999888776432111 124467999999999999999999999999887776544321
Q ss_pred hccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------C--------CC
Q 011400 279 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------SD 343 (487)
Q Consensus 279 ~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------~--------~~ 343 (487)
...+..++.. ...+.|+||||++.+.+.. .+.|+..++... . ..
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~-------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l 148 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDI 148 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC---------------
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCHHH-------------HHHHHHHHHhcccceeeccCcccccccccC
Confidence 1223333322 2245799999999885321 112223332111 0 01
Q ss_pred CcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011400 344 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 422 (487)
Q Consensus 344 ~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~sg~dI~~L~~~A~ 422 (487)
..+.++++++.+..+++++++||...+.+++|+.++..++++..........+ ..+..+++.+.|.. +++..+++.+.
T Consensus 149 ~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~ 227 (334)
T 1in4_A 149 QPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVR 227 (334)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHH
Confidence 23556778999999999999999888899999999999999987654333322 22566788777754 66667777664
Q ss_pred hHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccC
Q 011400 423 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 423 ~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ 464 (487)
..+..+ + ...||.+++.+++....
T Consensus 228 ~~a~~~------~------------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 228 DMLTVV------K------------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHH------T------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHc------C------------CCCcCHHHHHHHHHHhC
Confidence 443221 0 12478888888887765
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=2.2e-15 Score=150.36 Aligned_cols=183 Identities=21% Similarity=0.190 Sum_probs=125.3
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~ 270 (487)
.+....++.+|++++|.+.+++.|...+... ...++||+||||||||++|+++++.+. ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 3455577888999999999999999887542 223599999999999999999999863 34778
Q ss_pred EecccchhhccCCcHHHHHHHHHHH--HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEE
Q 011400 271 ISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 348 (487)
Q Consensus 271 v~~~~l~~~~~g~se~~l~~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlV 348 (487)
+++++..+. ......+....... ....+.+|+|||+|.+... ..+.|+..++.. ...+.+
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~---~~~~~~ 143 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMF---SSNVRF 143 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHT---TTTEEE
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc---CCCCeE
Confidence 877654221 11111222211100 0134689999999988432 234456666532 234667
Q ss_pred EEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHhcCC
Q 011400 349 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGY 409 (487)
Q Consensus 349 IatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t~G~ 409 (487)
|+++|.+..+.+++.+|+. .+.+++|+.++...+++..+....... +..++.++..+.|.
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 7789999999999999997 689999999999999998875544321 22355666666653
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=1.1e-14 Score=148.95 Aligned_cols=225 Identities=15% Similarity=0.096 Sum_probs=149.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCe--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 275 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~--gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~ 275 (487)
+....++++|.+...+.|.+.+...... ..+. +++|+||||||||++++++++.+ +..++.++|..
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 3445589999999999999888553321 1233 89999999999999999999998 57889998765
Q ss_pred chhh----------------ccCCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 276 VVSK----------------WRGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 276 l~~~----------------~~g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ..+.. ......+...... ..|.||+|||+|.+. ...+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHH
Confidence 4321 01111 2223333333322 447899999999871 234455666665
Q ss_pred CCcC-CCCcEEEEEEeCCC---CcccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHh---
Q 011400 338 GLTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERT--- 406 (487)
Q Consensus 338 ~~~~-~~~~VlVIatTn~p---~~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~~---~~~~~~l~~la~~t--- 406 (487)
.... ....+.+|+++|.+ ..+++.+.+||.. .+.+++++.++..++++..+.... .-.+..++.+++.+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 4322 01357788888887 5688999999975 799999999999999988775311 11222356677888
Q ss_pred ------cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHhccCCC
Q 011400 407 ------EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 466 (487)
Q Consensus 407 ------~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~~~~ps 466 (487)
.| ..+.+..+++.|+..+..+ ....|+.+|+..++......
T Consensus 231 ~~~~~~~G-~~r~~~~~l~~a~~~a~~~------------------~~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 231 TPLDTNRG-DARLAIDILYRSAYAAQQN------------------GRKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp STTCTTSC-CHHHHHHHHHHHHHHHHHT------------------TCSSCCHHHHHHHHHHHSCC
T ss_pred ccCCCCCC-cHHHHHHHHHHHHHHHHHh------------------CCCCcCHHHHHHHHHHHhhh
Confidence 44 3456667777776554331 01247788888777776554
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=153.88 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=115.8
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccchh
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 278 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----------~~~~i~v~~~~l~~ 278 (487)
+.|.++..+.|...+...+.. ..+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~--------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS--------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 667777778877776544321 356789999999999999999999998 34688999876543
Q ss_pred h----------c------cCCcHHHHHHHHHHH--HhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011400 279 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 340 (487)
Q Consensus 279 ~----------~------~g~se~~l~~~f~~a--~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~ 340 (487)
. . .+.+...+..+|... ....+.||+|||+|.+. . +.++..|+.+..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 234566778888764 34567899999999996 1 223344444432
Q ss_pred CCCCcEEEEEEeCCCCc----ccHHHHhhcc-ccccCCCCCHHHHHHHHHHhCCC
Q 011400 341 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 341 ~~~~~VlVIatTn~p~~----Ld~aL~rRf~-~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
.....+.||+++|..+. +++++++||. .++.|++|+.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23456888999988764 4556678996 57999999999999999998754
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.63 E-value=1.3e-15 Score=170.80 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=141.2
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCC
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 283 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~ 283 (487)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998886532110 0111333479999999999999999999998 6899999999998776654
Q ss_pred cHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCCCcEEEEEEeCCC
Q 011400 284 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 355 (487)
Q Consensus 284 se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~~~VlVIatTn~p 355 (487)
...+....+...++||||||||.+.+ .+.+.|+..++.-. .....++||+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233444555678999999988742 35566777776421 122346788999976
Q ss_pred Cc------------ccHHHHhhccccccCCCCCHHHHHHHHHHhCCCC-------CCCCCC---CHHHHHHH--hcCCcH
Q 011400 356 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGEESL---PYDLLVER--TEGYSG 411 (487)
Q Consensus 356 ~~------------Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~-------~~~~~~---~l~~la~~--t~G~sg 411 (487)
.. +.+++++||+..+.|++|+.+++..|++.++... ...... .++.+++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 43 7889999998899999999999999998876432 111111 23445443 223556
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 011400 412 SDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~ 430 (487)
++|+.+++++...++.+.+
T Consensus 711 R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp TTHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7888888888777776544
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.63 E-value=6.2e-15 Score=150.16 Aligned_cols=188 Identities=22% Similarity=0.249 Sum_probs=130.1
Q ss_pred cCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------
Q 011400 199 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 267 (487)
Q Consensus 199 ~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------- 267 (487)
..+.+.+|++++|.+.+++.|...+... ..++.+||+||||||||++|+++++.++..
T Consensus 8 ~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 8 RKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred HhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 3456678999999999999999987432 234579999999999999999999988542
Q ss_pred -------------EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHH
Q 011400 268 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 330 (487)
Q Consensus 268 -------------~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~ 330 (487)
++.++...- .....++.++..+.. ..+.||+|||+|.+... ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~ 137 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFN 137 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HHH
T ss_pred HHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HHH
Confidence 233332210 111224445544432 23579999999987421 234
Q ss_pred HHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHhcCC
Q 011400 331 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGY 409 (487)
Q Consensus 331 ~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~-~~l~~la~~t~G~ 409 (487)
.|+..++. ....+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..++.+++.+.|
T Consensus 138 ~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G- 212 (373)
T 1jr3_A 138 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 212 (373)
T ss_dssp HHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-
T ss_pred HHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-
Confidence 56677763 2345677778888889999999998 56899999999999999988765443322 225667787876
Q ss_pred cHHHHHHHHHHH
Q 011400 410 SGSDIRLVSKEA 421 (487)
Q Consensus 410 sg~dI~~L~~~A 421 (487)
+.+++..++..+
T Consensus 213 ~~r~~~~~l~~~ 224 (373)
T 1jr3_A 213 SLRDALSLTDQA 224 (373)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 445666666554
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.61 E-value=2.7e-15 Score=167.96 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=143.5
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhh-------
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~------- 279 (487)
++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 35889999999888877542210 00112345679999999999999999999999999999999887543
Q ss_pred -----ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------CCCcE
Q 011400 280 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 346 (487)
Q Consensus 280 -----~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~~~~V 346 (487)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|+..|+.-.- .-..+
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 2222111 1234444555679999999998742 356667777773211 11357
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC---------
Q 011400 347 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT--------- 392 (487)
Q Consensus 347 lVIatTn~p~-------------------------~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~--------- 392 (487)
+||+|||.+. .+++++++||+.++.|++|+.+++..|++.++....
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 7899999754 578899999998899999999999999998875321
Q ss_pred CC-CCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011400 393 GE-ESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 393 ~~-~~~~l~~la~~t--~G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
.. .+..++.+++.. ..+..+++..+++.+...++.+.+
T Consensus 680 ~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 680 LEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 11 112245566543 345678899998888888776643
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.59 E-value=7.1e-15 Score=156.87 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=99.3
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-----cchhh
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSK 279 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-----~l~~~ 279 (487)
..++|.+++++.+...+.. ..+|||+||||||||++|+++|+.++ .+|..+++. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4689999999988876633 35899999999999999999999884 455555553 22222
Q ss_pred ccCCcHHHHHHHHHHHHh-c--CCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-------cCCCCcEEEE
Q 011400 280 WRGDSEKLIKVLFELARH-H--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVL 349 (487)
Q Consensus 280 ~~g~se~~l~~~f~~a~~-~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~-------~~~~~~VlVI 349 (487)
+.+..... ...|..+.. . .++|||||||+.+.+ .+.+.|+..|+.- .......++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22211111 111221111 1 367999999986532 3455677777532 1111222457
Q ss_pred EEeCCCCc---ccHHHHhhccccccCCCCCH-HHHHHHHHHhCC
Q 011400 350 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 389 (487)
Q Consensus 350 atTn~p~~---Ld~aL~rRf~~~i~~~~Pd~-eeR~~IL~~~l~ 389 (487)
+|||.+.. ..+++++||...+.+++|+. +++..|++....
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 77876432 55799999988899999976 778899987653
No 72
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.55 E-value=2.1e-14 Score=140.26 Aligned_cols=158 Identities=22% Similarity=0.200 Sum_probs=94.7
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhhc
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 280 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~~ 280 (487)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 358999999999988887775432 2346799999999999999999999874 689999998763321
Q ss_pred -----cCCcHHH-------HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------
Q 011400 281 -----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 340 (487)
Q Consensus 281 -----~g~se~~-------l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~-------- 340 (487)
.|..... ....+.. ..+++|||||+|.+... ....|+..++.-.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1111000 0112222 23479999999988532 2334555555211
Q ss_pred CCCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHH----HHHHHHHhC
Q 011400 341 QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEA----RRAMFESLL 388 (487)
Q Consensus 341 ~~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~ee----R~~IL~~~l 388 (487)
.....+.+|+|||.+ ..+.+++.+||.. +.+..|+..+ ...+++.++
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 112246688888875 2367899999954 3444444443 444444443
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=2.3e-14 Score=145.36 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=119.9
Q ss_pred hhcCCCCCCCCcccCcHHHHHHHHHHH-hccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCC---------
Q 011400 197 IIRGSPDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 266 (487)
Q Consensus 197 ~~~~~~~~~~~di~G~e~~k~~L~e~l-~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~--------- 266 (487)
+.+.+++.+|++++|.+.+++.|...+ .. ...+. ++|+||+|+|||++++++++++..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~-----------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhhC-----------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 556778889999999999999888765 21 12234 999999999999999999996511
Q ss_pred --------------------cEEEEecccchhhccCCcHHHHHHHHHHHH--------------hcCCcEEEechhhhHH
Q 011400 267 --------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAII 312 (487)
Q Consensus 267 --------------------~~i~v~~~~l~~~~~g~se~~l~~~f~~a~--------------~~~p~IL~IDEiD~L~ 312 (487)
.++.++..+.. ......++..+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12222222110 001112344443332 2256799999999863
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
.. ..+.|+..++... ....+|.+|+.+..+.+++++|+ ..+.+++|+.++...+++..+....
T Consensus 148 ~~-------------~~~~L~~~le~~~---~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 KD-------------AQAALRRTMEKYS---KNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp HH-------------HHHHHHHHHHHST---TTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HH-------------HHHHHHHHHHhhc---CCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 21 2334556665332 23567778899999999999999 6699999999999999998875544
Q ss_pred CC-C-CCCHHHHHHHhcCCc
Q 011400 393 GE-E-SLPYDLLVERTEGYS 410 (487)
Q Consensus 393 ~~-~-~~~l~~la~~t~G~s 410 (487)
.. . +..++.+++.+.|-.
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNL 230 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCH
T ss_pred CCCCcHHHHHHHHHHcCCCH
Confidence 33 2 233566777776643
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2.9e-13 Score=137.18 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=112.9
Q ss_pred hhhcCCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC-----CcEEE
Q 011400 196 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 270 (487)
Q Consensus 196 ~~~~~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~-----~~~i~ 270 (487)
.+...+++.+|++++|.+.+++.|...+... ..+ +++|+||||||||++|+++|+.+. ..+..
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 3455567788999999999999998877431 122 499999999999999999999873 24667
Q ss_pred EecccchhhccCCcHHHHHHHHHHHHh------cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCC
Q 011400 271 ISASSVVSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 344 (487)
Q Consensus 271 v~~~~l~~~~~g~se~~l~~~f~~a~~------~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~ 344 (487)
+++++.. ....++..+..... ..+.|++|||+|.+... ..+.|+..++.. ..
T Consensus 82 ~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~ 139 (340)
T 1sxj_C 82 LNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TK 139 (340)
T ss_dssp ECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TT
T ss_pred EcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CC
Confidence 7665431 12233333332221 13579999999988432 234466666532 23
Q ss_pred cEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCC
Q 011400 345 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 390 (487)
Q Consensus 345 ~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~ 390 (487)
...+|.+||.+..+.+++++|+. .+.+..++.++..+++...+..
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~ 184 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVH 184 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHH
Confidence 35566788999999999999996 5888888888888888887743
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=2.7e-14 Score=162.08 Aligned_cols=207 Identities=24% Similarity=0.288 Sum_probs=143.1
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--- 279 (487)
+++|+|.+.+++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999999888543210 00111344689999999999999999999998 789999999876543
Q ss_pred ---------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC--------C
Q 011400 280 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 342 (487)
Q Consensus 280 ---------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~--------~ 342 (487)
|+|..+ ...+....+...++||||||+|.+. ..+++.|+..++.-.- .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC-------------HHHHHHHHHHhccCceECCCCCEec
Confidence 222221 1223344455556899999998763 2456778888874321 1
Q ss_pred CCcEEEEEEeCCC--------------------------CcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCC----
Q 011400 343 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---- 392 (487)
Q Consensus 343 ~~~VlVIatTn~p--------------------------~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~---- 392 (487)
-..++||+|||.. ..+.++++.||+..+.+.+|+.++...|++.++....
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1357789999972 2356788899998899988999999999988775211
Q ss_pred ---C--C-CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011400 393 ---G--E-ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 430 (487)
Q Consensus 393 ---~--~-~~~~l~~la~~t~--G~sg~dI~~L~~~A~~~a~rr~~ 430 (487)
. . .+..++.|++..- .+..++|..+++.+...++.+.+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1122455666655 57788999999998888877654
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.53 E-value=7.6e-15 Score=147.19 Aligned_cols=195 Identities=19% Similarity=0.253 Sum_probs=116.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc---
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 280 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~--- 280 (487)
++++|.+...+.+.+.+.... ..+.+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468899988888888775432 245689999999999999999999976 5789999998764321
Q ss_pred --cCC----cHH---HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CCC
Q 011400 281 --RGD----SEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 343 (487)
Q Consensus 281 --~g~----se~---~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~~ 343 (487)
.|. ... .....|..+. +++|||||+|.+... ....|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 111 000 1122344433 379999999988532 3344666666432 112
Q ss_pred CcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHH----HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHH
Q 011400 344 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSGS 412 (487)
Q Consensus 344 ~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR----~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~ 412 (487)
..+.||++||.+ ..+++.|..||. .+.+..|+..+| ..++++++........ .....++..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~-------~~~~~~s~~ 207 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNR-------KVVKGFTPQ 207 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT-------CCCCCBCHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc-------cCccCCCHH
Confidence 346788899876 236778888985 355555554444 3455554422110000 001234455
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhc
Q 011400 413 DIRLVSKEAAMQPLRRLMVLLEG 435 (487)
Q Consensus 413 dI~~L~~~A~~~a~rr~~~~le~ 435 (487)
.+..+.+..|.+++|++.+.++.
T Consensus 208 a~~~L~~~~wpGnvReL~~~l~~ 230 (304)
T 1ojl_A 208 AMDLLIHYDWPGNIRELENAIER 230 (304)
T ss_dssp HHHHHHHCCCSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHH
Confidence 55555555555555555554443
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=3e-15 Score=163.25 Aligned_cols=166 Identities=21% Similarity=0.235 Sum_probs=103.4
Q ss_pred CcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE----ecccchhhcc-
Q 011400 207 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR- 281 (487)
Q Consensus 207 ~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v----~~~~l~~~~~- 281 (487)
..|+|++.+|+.+...+..... ............+|||+||||||||++|+++|+.++..++.. ++.++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~-~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP-KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC-EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCCc-ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 5689999999887544422110 000001123345899999999999999999999987665543 2222222111
Q ss_pred ----CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------CCCCcEE
Q 011400 282 ----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 347 (487)
Q Consensus 282 ----g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~----------~~~~~Vl 347 (487)
|..... ...+..+ ..+||||||+|.+... ..+.|+..|+.-. ..+..+.
T Consensus 374 ~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cccccccccc-CCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 111000 0112222 2379999999987432 2344667776321 1124577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccc-cccCCCCCHHHHHHHHHHhCCCC
Q 011400 348 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 391 (487)
Q Consensus 348 VIatTn~p~-------------~Ld~aL~rRf~~-~i~~~~Pd~eeR~~IL~~~l~~~ 391 (487)
||+|||.+. .+++++++||+. .+..+.|+.+ ...|+++.+...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999999886 899999999974 4556777777 888888776543
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=9.1e-14 Score=123.89 Aligned_cols=125 Identities=12% Similarity=0.128 Sum_probs=86.1
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCc
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~s 284 (487)
+++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57888888888888775432 244679999999999999999999987 77899 999887544
Q ss_pred HHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC-------c
Q 011400 285 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 357 (487)
Q Consensus 285 e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~-------~ 357 (487)
......+..+. +++|||||+|.+... ....|+..+... ...+.+|++||.+. .
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~---~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQE---HRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHSS---SCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhhc---CCCEEEEEECCcCHHHHHHcCC
Confidence 22334455443 379999999988543 223355555422 22355778888752 3
Q ss_pred ccHHHHhhccc
Q 011400 358 LDAAMLRRLEK 368 (487)
Q Consensus 358 Ld~aL~rRf~~ 368 (487)
+.+.+..|+..
T Consensus 126 ~~~~L~~rl~~ 136 (145)
T 3n70_A 126 IIAELYYCFAM 136 (145)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHhcC
Confidence 66777777743
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.45 E-value=2.6e-14 Score=127.18 Aligned_cols=125 Identities=11% Similarity=0.115 Sum_probs=84.7
Q ss_pred cccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHH
Q 011400 208 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 287 (487)
Q Consensus 208 di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~ 287 (487)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57898888888888875432 2346799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC-Cc----ccHHH
Q 011400 288 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 362 (487)
Q Consensus 288 l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p-~~----Ld~aL 362 (487)
...++..+. +++|||||+|.+... ....|+..++... ...+.+|++||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHH
Confidence 344555443 479999999988543 1223444444221 2335577777754 33 45566
Q ss_pred Hhhccc
Q 011400 363 LRRLEK 368 (487)
Q Consensus 363 ~rRf~~ 368 (487)
..|+..
T Consensus 129 ~~rl~~ 134 (143)
T 3co5_A 129 AGLFSE 134 (143)
T ss_dssp HHHSSS
T ss_pred HHHhcC
Confidence 677643
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.40 E-value=5.6e-12 Score=127.77 Aligned_cols=168 Identities=13% Similarity=0.120 Sum_probs=114.6
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc-----------------------
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------- 267 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~----------------------- 267 (487)
-++++.+.|...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3566777777766431 345679999999999999999999988532
Q ss_pred -EEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCC
Q 011400 268 -FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 342 (487)
Q Consensus 268 -~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~ 342 (487)
++.++..+- ........++.+++.+.. ..+.|++|||+|.+... ..+.|+..++. .
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p 135 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---C
Confidence 333332210 011233456666666543 23579999999988432 24567788873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011400 343 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 413 (487)
Q Consensus 343 ~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~d 413 (487)
+..+++|.+|+.++.+.+++++|+. .+.++.|+.++..++++... .. .+..++.++..+.|..+..
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCHHHH
T ss_pred CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHH
Confidence 3456677788889999999999995 59999999999999998876 11 2223466777777655433
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.40 E-value=1e-11 Score=127.74 Aligned_cols=210 Identities=14% Similarity=0.082 Sum_probs=128.6
Q ss_pred CCCCCCcccCcHHHHHHHHHHH-hccccCchhhcCCCCCCeeEEE--EcCCCChHHHHHHHHHHHh---------CCcEE
Q 011400 202 PDVKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFF 269 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l-~~~l~~~~~~~~~~~~~~gvLL--~GppGtGKT~LAraiA~el---------~~~~i 269 (487)
|....++++|.+...+.|.+.+ ....... ...+..++| +||||+|||++++.+++++ +..++
T Consensus 17 ~~~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 17 ENYIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TTCCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CccCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 3344588999999999998877 4332110 013467999 9999999999999999876 45678
Q ss_pred EEecccchhh------c----------cCCc-HHHHHHHHHHHH-hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 270 NISASSVVSK------W----------RGDS-EKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 270 ~v~~~~l~~~------~----------~g~s-e~~l~~~f~~a~-~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
.+++...... . .+.. ......+..... ...|.||+|||+|.+...... ....+..
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~ 163 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYT 163 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHH
Confidence 8886432110 0 0111 122233333322 245789999999998642100 0123333
Q ss_pred HHHHhcCCcCCC--CcEEEEEEeCCCC---ccc---HHHHhhccccccCCCCCHHHHHHHHHHhCCCCCC---CCCCCHH
Q 011400 332 LLIQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG---EESLPYD 400 (487)
Q Consensus 332 Ll~~ld~~~~~~--~~VlVIatTn~p~---~Ld---~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~---~~~~~l~ 400 (487)
++..++...... ..+.+|++++.+. .++ +.+.+++...+.+++++.++..+++...+..... ..+..+.
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 444444332112 5577887887664 344 6677787666899999999999999876532211 1122356
Q ss_pred HHHHHhc------CCcHHHHHHHHHHHHhHH
Q 011400 401 LLVERTE------GYSGSDIRLVSKEAAMQP 425 (487)
Q Consensus 401 ~la~~t~------G~sg~dI~~L~~~A~~~a 425 (487)
.+++.+. |. +..+..+++.++..+
T Consensus 244 ~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 244 LISDVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 6777887 65 456667777665443
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=6.1e-12 Score=137.47 Aligned_cols=52 Identities=35% Similarity=0.521 Sum_probs=44.6
Q ss_pred CCCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 200 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 200 ~~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..++..|++++|.+.+++.+...+. ...+++|+||||||||++|+++|..+.
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4566779999999999998887773 235899999999999999999999874
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.7e-11 Score=121.50 Aligned_cols=142 Identities=11% Similarity=0.108 Sum_probs=102.8
Q ss_pred CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccchhhccCCc
Q 011400 211 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 284 (487)
Q Consensus 211 G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el------~~~~i~v~~~~l~~~~~g~s 284 (487)
|++++.+.|...+... . ..++|||||||+|||++|+++|+.+ ...++.+++.+- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 5677788888877442 1 4589999999999999999999974 346777765420 123
Q ss_pred HHHHHHHHHHHHhcC----CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccH
Q 011400 285 EKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 360 (487)
Q Consensus 285 e~~l~~~f~~a~~~~----p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~ 360 (487)
-..++.+++.+.... ..|++|||+|.+... ..+.|+..++. .+..+++|.+|+.+..+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 345677777765432 359999999988432 24568888873 3344566677788999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHhC
Q 011400 361 AMLRRLEKRILVPLPDTEARRAMFESLL 388 (487)
Q Consensus 361 aL~rRf~~~i~~~~Pd~eeR~~IL~~~l 388 (487)
++++| .+.++.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 78999999999998888876
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.27 E-value=4.7e-12 Score=150.32 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=108.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccC----------chhhcC-----------------C--CCCCeeEEEEcCCCCh
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-----------------L--LSPWKGILLFGPPGTG 252 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~----------~~~~~~-----------------~--~~~~~gvLL~GppGtG 252 (487)
+.++|+|+.|++++|+.+.+.+.+++.+ ++.+.. . .+..+.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4478999999999999999999999844 334433 1 2233449999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEEecccch------------hhccCC----cHHHHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 253 KTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 253 KT~LAraiA~el---~~~~i~v~~~~l~------------~~~~g~----se~~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
||+||++++.+. +-+.+.|+..+.. ++|.++ +++.++.++..|+...|++||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999977 4566666655533 566677 899999999999999999999999999998
Q ss_pred hhc---cc-chhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 314 QRG---EA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 314 ~r~---~~-~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.+. +. ..+.....+++++++..+++.....+ |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 843 11 11235667788999999998755544 4455 67665
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.25 E-value=1e-11 Score=101.66 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 011400 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 455 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD 455 (487)
|.++|.+||+.++++.+...+++++.||+.|+||||+||.++|++|++.++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999888889999999999999999999999999999999872 13599999
Q ss_pred HHHHHhccCCChhhh--HHHHHHHH
Q 011400 456 VEIALKNTRPSAHLH--AHRYEKFN 478 (487)
Q Consensus 456 ~~~AL~~~~ps~~~~--~~~y~~~~ 478 (487)
|..|++++.++.... ...|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 999999999998753 68888886
No 86
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=99.63 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=70.7
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCC
Q 011400 371 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 450 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~ 450 (487)
+-.+||.++|.+||+.++++.....+++++.||+.|+||||+||.++|++|++.++++. ...
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 45789999999999999999888888999999999999999999999999999999862 145
Q ss_pred CCHHHHHHHHhccCCC
Q 011400 451 IRPEDVEIALKNTRPS 466 (487)
Q Consensus 451 It~eD~~~AL~~~~ps 466 (487)
|+.+||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999999875
No 87
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.16 E-value=2.5e-11 Score=98.06 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHH
Q 011400 376 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 455 (487)
Q Consensus 376 d~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD 455 (487)
|.++|.+||+.++++.....+++++.+|+.|+||||+||..+|++|+..++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999998887788999999999999999999999999999987742 14599999
Q ss_pred HHHHHhccCCChhhhHHHH
Q 011400 456 VEIALKNTRPSAHLHAHRY 474 (487)
Q Consensus 456 ~~~AL~~~~ps~~~~~~~y 474 (487)
|..|+++++|+.+.++..|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999998545555
No 88
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=94.23 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCC
Q 011400 373 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 452 (487)
Q Consensus 373 ~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It 452 (487)
|+|+.++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|+..++++. ...|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 689999999999999999888788999999999999999999999999999999851 14599
Q ss_pred HHHHHHHHhccCC
Q 011400 453 PEDVEIALKNTRP 465 (487)
Q Consensus 453 ~eD~~~AL~~~~p 465 (487)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=1.9e-10 Score=105.44 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=62.1
Q ss_pred CCCCCCCcccC----cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 011400 201 SPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 272 (487)
Q Consensus 201 ~~~~~~~di~G----~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~ 272 (487)
....+|+++++ .+.+.+.+.+++.... ..++.+++|+||||||||+|++++++.+ |..++.++
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45567888886 3344445554443221 1345789999999999999999999987 66777777
Q ss_pred cccchhhccCCcHHH-HHHHHHHHHhcCCcEEEechhhhH
Q 011400 273 ASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 273 ~~~l~~~~~g~se~~-l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
..++...+....... ...++.. ...|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 766654322110000 0011111 235789999999743
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.03 E-value=6.3e-10 Score=115.03 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=132.9
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccchhh---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK--- 279 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l~~~--- 279 (487)
++.++|.....+++.+.+.... .....|+|+|++|||||++|++++.... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4578888777777776664321 2345699999999999999999998774 78999999876432
Q ss_pred ----------ccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------cC
Q 011400 280 ----------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 341 (487)
Q Consensus 280 ----------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~--------~~ 341 (487)
+.|.... ....|+.|.. ++||||||+.+... ++..|+..++.- ..
T Consensus 206 ~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1111110 1223444433 79999999988533 334455555421 11
Q ss_pred CCCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHHH----HHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 342 SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 342 ~~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR~----~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
....+.||++||.. ..+.+.+..|+.. +.+..|...+|. .++++++....... .....+++
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~-------~~~~~~~~ 340 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKY-------AKEVEGFT 340 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHT-------TCCCCEEC
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHc-------CCCCCCCC
Confidence 11246788999874 2355667767743 556666665554 34444432211000 00123577
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHHHHHh
Q 011400 411 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 461 (487)
Q Consensus 411 g~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~~AL~ 461 (487)
...+..+....|.+++|++.+.++........ ..|+.+|+-..++
T Consensus 341 ~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~------~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 341 KSAQELLLSYPWYGNVRELKNVIERAVLFSEG------KFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS------SEECHHHHHHHC-
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC------CcCcHHHCcHhhh
Confidence 88888888899999999888877765443221 3488888865543
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.02 E-value=2.3e-10 Score=141.28 Aligned_cols=139 Identities=19% Similarity=0.289 Sum_probs=92.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH-HhCCcEEEEecccchhhccCCcHHHHHHHHHHHH---------------hcCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 302 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~-el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~---------------~~~p~I 302 (487)
..++|||+||||||||++|+.+.. ..+..++.++++...+ ...+...++... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 347899999999999999955544 4477888888766532 233444444321 112369
Q ss_pred EEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCC-------CcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011400 303 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 370 (487)
Q Consensus 303 L~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~-------~~VlVIatTn~p~-----~Ld~aL~rRf~~~i 370 (487)
|||||+|....++.... ...+++.++++ ..+..... ..+.+|+|+|+|. .++++++||| .++
T Consensus 1340 lFiDEinmp~~d~yg~q----~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ----NVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCC----HHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCch----hHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 99999987443321111 12233333332 12221111 2478999999994 7999999999 669
Q ss_pred cCCCCCHHHHHHHHHHhCC
Q 011400 371 LVPLPDTEARRAMFESLLP 389 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l~ 389 (487)
.++.|+.+++..|+..++.
T Consensus 1414 ~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=8.3e-10 Score=98.97 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=68.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
+...++|+||+|+|||+|+++++..+ |...++++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 34679999999999999999999988 677888887776533 112357899999998753221
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeC-CCCccc--HHHHhhccccccCCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 374 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn-~p~~Ld--~aL~rRf~~~i~~~~ 374 (487)
... +...++.....+..++|+ |++ .|..+. +++.+|+..-..+.+
T Consensus 100 ----------~~~---l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------QAL---LFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----------HHH---HHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----------HHH---HHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 112 223332222222223444 555 454332 899999966554443
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.95 E-value=4.8e-09 Score=107.75 Aligned_cols=198 Identities=21% Similarity=0.233 Sum_probs=123.0
Q ss_pred CCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchhhc---
Q 011400 206 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKW--- 280 (487)
Q Consensus 206 ~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~~~--- 280 (487)
-.+++|......++.+.+.... .....++++|++||||+++|+++....+.. |+.++|+.+....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 3568888887777776654321 233469999999999999999999987543 9999998764221
Q ss_pred ----------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------CC
Q 011400 281 ----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 342 (487)
Q Consensus 281 ----------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~--------~~ 342 (487)
.|.... ....|+.+.. ++||||||+.+... ++..|+..++.-. ..
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~ 260 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKI 260 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBE
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcce
Confidence 111110 1123444433 79999999988533 3344666665221 01
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhccccccCCCCCHHHH----HHHHHHhCCCCCCCCCCCHHHHHHHhcCCcH
Q 011400 343 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSG 411 (487)
Q Consensus 343 ~~~VlVIatTn~p-------~~Ld~aL~rRf~~~i~~~~Pd~eeR----~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg 411 (487)
.-.+.+|++||.. ..+.+.|..|+.. +.+.+|...+| ..++.+++...... ......+++.
T Consensus 261 ~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 332 (368)
T 3dzd_A 261 EVDIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAEYFLKKFAKE-------YKKNCFELSE 332 (368)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHHHHHHHHHHH-------TTCCCCCBCH
T ss_pred eeeeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCH
Confidence 1236678888864 1245577778744 45555555444 34444444221100 0011245788
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhchhc
Q 011400 412 SDIRLVSKEAAMQPLRRLMVLLEGRQE 438 (487)
Q Consensus 412 ~dI~~L~~~A~~~a~rr~~~~le~~~~ 438 (487)
..+..|.+..|.+++|++.+.++....
T Consensus 333 ~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 333 ETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 889999999999999998888776543
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.90 E-value=9.2e-09 Score=103.00 Aligned_cols=188 Identities=16% Similarity=0.143 Sum_probs=112.3
Q ss_pred CCCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch---
Q 011400 201 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--- 277 (487)
Q Consensus 201 ~~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~--- 277 (487)
.+....+.++|.+...+.|.+ +.. ..++|+||+|+|||+|++.++++.+..++.+++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 344556789999998888887 521 3799999999999999999999987777888765420
Q ss_pred --h--h-------------------------c-----cC---C------cHHHHHHHHHHHHhc--CCcEEEechhhhHH
Q 011400 278 --S--K-------------------------W-----RG---D------SEKLIKVLFELARHH--APSTIFLDEIDAII 312 (487)
Q Consensus 278 --~--~-------------------------~-----~g---~------se~~l~~~f~~a~~~--~p~IL~IDEiD~L~ 312 (487)
+ . . .+ . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 0 0 00 0 011233344444332 38899999999886
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc---------HHHHhhccccccCCCCCHHHHHHH
Q 011400 313 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAM 383 (487)
Q Consensus 313 ~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld---------~aL~rRf~~~i~~~~Pd~eeR~~I 383 (487)
...... . ...+..+ ++.. ..+.+|.+++....+. ..+..|+...+.+++.+.++..++
T Consensus 151 ~~~~~~-----~-~~~l~~~---~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 151 KLRGVN-----L-LPALAYA---YDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp GCTTCC-----C-HHHHHHH---HHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccCchh-----H-HHHHHHH---HHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 420000 0 1111222 2211 2355555665432111 123335556688999999999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 384 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 384 L~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
+...+.......+ +...+...+.|+.. .+..++.
T Consensus 218 l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 9876643222222 34778888888754 4555544
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.85 E-value=2.6e-08 Score=99.56 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=110.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch----
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 277 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~---- 277 (487)
|...-+.++|.+...+.|.+.+.. .+.++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 445567899999999999887742 14799999999999999999999876 6666654321
Q ss_pred --------h---hcc-------------------------CCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccchh
Q 011400 278 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 321 (487)
Q Consensus 278 --------~---~~~-------------------------g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~ 321 (487)
. ... ......+..+...+....|.+|+|||++.+..... ..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~ 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RG 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TT
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cc
Confidence 0 000 01112222222223323489999999998853100 00
Q ss_pred hHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCccc---------HHHHhhccccccCCCCCHHHHHHHHHHhCCCCC
Q 011400 322 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---------AAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 392 (487)
Q Consensus 322 ~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld---------~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~ 392 (487)
. ..+...|...++.. ..+.+|.++.....+. ..+..|+...+.+++.+.++-.+++...+....
T Consensus 148 ~---~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 G---KELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp T---HHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h---hhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0 11222222222211 2344555554321111 123335555788898999999999987664333
Q ss_pred CC-CCCCHHHHHHHhcCCcHHHHHHHHH
Q 011400 393 GE-ESLPYDLLVERTEGYSGSDIRLVSK 419 (487)
Q Consensus 393 ~~-~~~~l~~la~~t~G~sg~dI~~L~~ 419 (487)
.. ....+..+...+.|+.. -+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 22 12235667788888653 4555543
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.80 E-value=2.8e-09 Score=111.73 Aligned_cols=147 Identities=19% Similarity=0.135 Sum_probs=84.2
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHH-HHHhCCcEEEEec-c---cchhhccCC
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA-S---SVVSKWRGD 283 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LArai-A~el~~~~i~v~~-~---~l~~~~~g~ 283 (487)
|+|++.+|+.|.-.+...-.. ....-+|||.|+||| ||++|+++ ++.+....+.... + .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 899999998888766442111 122337999999999 99999999 7765443332111 1 111000000
Q ss_pred cHH-HHHHHHHHHHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------CCCCcEEEEEEeCCCC
Q 011400 284 SEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLPW 356 (487)
Q Consensus 284 se~-~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~------~~~~~VlVIatTn~p~ 356 (487)
+.. .-...+..|. .+++|||||+.+..+ .+..|++.|+.-. .-+..+.||+|+|...
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~ 350 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGE 350 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCccc
Confidence 000 0001122222 279999999987533 3444666665211 2234578999999864
Q ss_pred -----------cccHHHHhhcccc-ccCCCCCHHH
Q 011400 357 -----------ELDAAMLRRLEKR-ILVPLPDTEA 379 (487)
Q Consensus 357 -----------~Ld~aL~rRf~~~-i~~~~Pd~ee 379 (487)
.|++++++||+.. +.++.|+.++
T Consensus 351 ~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp --CCSCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred ccCCCCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 7899999999764 4456665544
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.79 E-value=1.8e-09 Score=87.00 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCCCCCCCCCHHHHH
Q 011400 378 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 457 (487)
Q Consensus 378 eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~~~~~~It~eD~~ 457 (487)
++|.+||+.++++.....+++++.+|+.|+||||+||.++|++|++.++++. ...|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4789999999988887778899999999999999999999999999999861 1359999999
Q ss_pred HHHhccC-CChhhh
Q 011400 458 IALKNTR-PSAHLH 470 (487)
Q Consensus 458 ~AL~~~~-ps~~~~ 470 (487)
.|++++. |+.++.
T Consensus 63 ~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 63 EAYATQVKTDNTVD 76 (82)
T ss_dssp HHHHTTCC------
T ss_pred HHHHHHHcCcCChH
Confidence 9999994 666653
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.79 E-value=2.8e-09 Score=99.23 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=61.3
Q ss_pred CCCCCcccCcHH----HHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 203 DVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 203 ~~~~~di~G~e~----~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
..+|+++++... +.+.+..++... +. ...+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 457899987553 333444443221 00 0123789999999999999999999988 67888888877
Q ss_pred chhhccCCcH-HHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 276 VVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 276 l~~~~~g~se-~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
+......... ..+..++..... +.+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 6543321110 001222333222 3699999997643
No 99
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.74 E-value=7.4e-09 Score=97.37 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=78.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh--------C-CcEEEEecccchhhcc----------CC-----cHHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC--------K-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELAR 296 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el--------~-~~~i~v~~~~l~~~~~----------g~-----se~~l~~~f~~a~ 296 (487)
.-.|++|+||||||++|..++... | .+++..+..++..... .. ....+..++.. .
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-P 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-G
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-c
Confidence 357899999999999998875442 4 6777677665543221 11 11222222211 2
Q ss_pred hcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCC
Q 011400 297 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 376 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd 376 (487)
...++||+|||++.+.+.+.+.... ..++..+.... ...+-||.+++.+..++.++++|+...+++..|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~~r--~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNTHR--HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGGTT--TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchh--------HHHHHHHHhcC--cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 2346899999999997654221111 01444454322 2334567788889999999999999988887764
Q ss_pred H
Q 011400 377 T 377 (487)
Q Consensus 377 ~ 377 (487)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.63 E-value=1.2e-08 Score=102.33 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=66.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 315 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~--~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r 315 (487)
.+.+.++|+||||||||+||.++|.+.+.+ |+.+...+..+.+....+..+..+.+...... +|+||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 345668999999999999999999876544 55552233334444455666666666665544 99999999986543
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHH
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 361 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~a 361 (487)
..... .....+...+++..+.++....+ +.+|+++| +...+++
T Consensus 199 ~~~s~-~G~v~~~lrqlL~~L~~~~k~~g-vtVIlttn-p~s~dea 241 (331)
T 2vhj_A 199 GGNTT-SGGISRGAFDLLSDIGAMAASRG-CVVIASLN-PTSNDDK 241 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHT-CEEEEECC-CSSCSSS
T ss_pred ccccc-cchHHHHHHHHHHHHHHHHhhCC-CEEEEEeC-Ccccchh
Confidence 22100 00001222333344433322222 45667777 4444444
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.57 E-value=3.3e-08 Score=99.05 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=59.2
Q ss_pred CCCCcccCcH----HHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 011400 204 VKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 275 (487)
Q Consensus 204 ~~~~di~G~e----~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~ 275 (487)
.+|+++.+.. .+.+.+.+++... +. .+..+++|+||||||||+||+++|+++. .+++.+++.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~---~~------~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY---PS------AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC---SC------SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc---cc------cCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 5789988643 2333333444221 10 1257899999999999999999998664 7888888877
Q ss_pred chhhccCCc-HHHHHHHHHHHHhcCCcEEEechhhhH
Q 011400 276 VVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 311 (487)
Q Consensus 276 l~~~~~g~s-e~~l~~~f~~a~~~~p~IL~IDEiD~L 311 (487)
+........ ......++.... .+.+|+|||++..
T Consensus 192 l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 192 FAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 655433211 111122222222 3469999999654
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.55 E-value=8.3e-08 Score=90.33 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=62.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 317 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~ 317 (487)
+..+++||+||||||||++|.++|+.+...++.+..+.. ..+ +..+ ....|++|||+|.-.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~----- 116 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC----- 116 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH-----
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh-----
Confidence 334689999999999999999999998654433211100 000 1111 113599999998421
Q ss_pred cchhhHHHHHHHHHHHHHhcCCc------CCC----CcEEEEEEeCCC---CcccHHHHhhccccccCCC
Q 011400 318 ARSEHEASRRLKTELLIQMDGLT------QSD----ELVFVLAATNLP---WELDAAMLRRLEKRILVPL 374 (487)
Q Consensus 318 ~~~~~~~~~~i~~~Ll~~ld~~~------~~~----~~VlVIatTn~p---~~Ld~aL~rRf~~~i~~~~ 374 (487)
.+.+...+...+++.. .+. ....+|.|||.+ +..-+.|.+|+. .+.++.
T Consensus 117 -------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~ 178 (212)
T 1tue_A 117 -------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPN 178 (212)
T ss_dssp -------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCS
T ss_pred -------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCC
Confidence 1222234555666641 001 112356688875 223367888984 355553
No 103
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.54 E-value=3.2e-07 Score=113.69 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=91.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 319 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~ 319 (487)
..++++.||+|||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+...+ +.+++||++.+...--
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHH---
Confidence 367999999999999999999999999999999987643 345566776666554 7999999998754311
Q ss_pred hhhHHHHHHHHHHHHHhcC----Cc------CCCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHHH
Q 011400 320 SEHEASRRLKTELLIQMDG----LT------QSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFE 385 (487)
Q Consensus 320 ~~~~~~~~i~~~Ll~~ld~----~~------~~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~ 385 (487)
+ ...+.+..+...+.. +. .-.....|++|.|.. ..|++++++|| +.+.+..||.+...+|+-
T Consensus 715 --s-~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 715 --S-AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp --H-HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred --H-HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 1 111112222222211 00 112335567788743 46999999999 559999999988888753
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.27 E-value=1.2e-06 Score=105.49 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=77.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----hc------------cCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KW------------RGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~~------------~g~se~~l~~~f~~a~~ 297 (487)
+.++++++|+||||||||+||.+++.+. |.....++..+... .. +...++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4678899999999999999999998876 55666666554321 11 12456677777778888
Q ss_pred cCCcEEEechhhhHHhhhc---ccchhhH-HHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCC
Q 011400 298 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 355 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~~r~---~~~~~~~-~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p 355 (487)
.+|++|+||+++.+.+... +....+. ...++.++++..|.+...... +.|| +||.+
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 9999999999998876431 1111111 234566777777776654443 4344 55543
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.20 E-value=2e-06 Score=107.43 Aligned_cols=139 Identities=20% Similarity=0.293 Sum_probs=86.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccchhhccCCcHHHHHHHHHHH----H----h--------cCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----R----H--------HAPS 301 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a----~----~--------~~p~ 301 (487)
..++|||+||||||||++++.....+ +.+++.++++.-. +...+...++.. + . .+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 34689999999999998876655544 6667788876543 233444444321 0 0 1124
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcC------CCCcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------SDELVFVLAATNLPW-----ELDAAMLRRLEKRI 370 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~------~~~~VlVIatTn~p~-----~Ld~aL~rRf~~~i 370 (487)
|+||||++.-..+.-+.. ..-.++.+++..-.-... .-..+.+|+|+|.|. .++++++|||.. +
T Consensus 1377 VlFiDDiNmp~~D~yGtQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-L 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-E
T ss_pred EEEecccCCCCccccccc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-E
Confidence 999999986433221111 112333333332110111 113477899999883 599999999955 9
Q ss_pred cCCCCCHHHHHHHHHHhC
Q 011400 371 LVPLPDTEARRAMFESLL 388 (487)
Q Consensus 371 ~~~~Pd~eeR~~IL~~~l 388 (487)
.++.|+.++...|+..++
T Consensus 1452 ~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999976543
No 106
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.17 E-value=2.2e-06 Score=83.83 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
++.++++|+||||||||++|++||+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998654
No 107
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.16 E-value=1.3e-05 Score=73.55 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999886544
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.05 E-value=2.1e-05 Score=98.55 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=88.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhhhcccch
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 320 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~r~~~~~ 320 (487)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+ ...+..+|.-+...+ +-.++|||+.+-..--+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~G-aW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQCG-AWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhcC-cEEEehhhhcCCHHHHHH--
Confidence 46789999999999999999999999999999987542 345566666655544 799999999874321100
Q ss_pred hhHHHHHHHHHHHHH-----hc-CC-cCCCCcEEEEEEeCCC----CcccHHHHhhccccccCCCCCHHHHHHHHHH
Q 011400 321 EHEASRRLKTELLIQ-----MD-GL-TQSDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMFES 386 (487)
Q Consensus 321 ~~~~~~~i~~~Ll~~-----ld-~~-~~~~~~VlVIatTn~p----~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~ 386 (487)
-......+...+... +. |. -.-.....|++|.|.- ..|++.+++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 000001111111111 01 11 0111235567777742 46999999999 4499999999888887543
No 109
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.02 E-value=3.5e-05 Score=77.51 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=87.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEecccchhhccCCcHHHHHHHHHHHHh----cCCcEEEechhhh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDA 310 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~-~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~----~~p~IL~IDEiD~ 310 (487)
..+.+||+||+|+||++.++.+++.+ +. ++..+... +. ..++.+.+.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998866 32 22222111 10 123334433332 2346999999987
Q ss_pred -HHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCC-----CCcccHHHHhhccccccCCCCCHHHHHHHH
Q 011400 311 -IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMF 384 (487)
Q Consensus 311 -L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~-----p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL 384 (487)
+... ..+.|+..++.. ....++|+++++. ...+.+++.+|+. .+.+..++..+....+
T Consensus 88 kl~~~-------------~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 88 GPNAA-------------INEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWV 151 (343)
T ss_dssp CCCTT-------------HHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHH
T ss_pred CCChH-------------HHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHH
Confidence 5321 234477777632 3344555554432 2357778888984 4888888888888888
Q ss_pred HHhCCCCCCCCC-CCHHHHHHHhcC
Q 011400 385 ESLLPSQTGEES-LPYDLLVERTEG 408 (487)
Q Consensus 385 ~~~l~~~~~~~~-~~l~~la~~t~G 408 (487)
+..+...+..-+ ..++.++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 888765543322 224445555544
No 110
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.00 E-value=1.6e-06 Score=89.07 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=68.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccchhhccCCcHHHHHHHHHHHHhcCCcEEEechhhhHHh-hh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 315 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~~~~~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~-~r 315 (487)
+.++..++|+||||+||||++++++..++..++.+....- .....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4667789999999999999999999998776655332221 0011111 122346789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHh--hccccccCC
Q 011400 316 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP 373 (487)
Q Consensus 316 ~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~r--Rf~~~i~~~ 373 (487)
.-....... ....+...++|. +.|++++|+++.+ +++++ |++..+...
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 110101110 123344555542 3467789999888 45555 565555443
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.92 E-value=0.00018 Score=77.38 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=95.5
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH-------hCCcEEEEecccc
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 276 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e-------l~~~~i~v~~~~l 276 (487)
.....++|.+...+.|.+.+... ....+-|+|+||+|+|||+||+.+++. +...++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34577999999999999987431 023456899999999999999999652 2122333332221
Q ss_pred -----hhhc----------------cCCc-HHHHHHHHHHHHh-cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHH
Q 011400 277 -----VSKW----------------RGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 333 (487)
Q Consensus 277 -----~~~~----------------~g~s-e~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll 333 (487)
.... .... +.....+...... ..|.+|+|||++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 0000 0011 1222222222222 267899999997421 11
Q ss_pred HHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccC---CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 334 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV---PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 334 ~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~---~~Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
..+ .....||.||..+..... +. ...+.+ ...+.++-.+++...+.............+++.+.|..
T Consensus 252 ~~l------~~~~~ilvTsR~~~~~~~-~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 KAF------DSQCQILLTTRDKSVTDS-VM---GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HTT------CSSCEEEEEESCGGGGTT-CC---SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHh------cCCCeEEEECCCcHHHHh-cC---CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 112 122345667765432211 00 112222 35688888888888764322122334677888888865
Q ss_pred HHHHHHH
Q 011400 411 GSDIRLV 417 (487)
Q Consensus 411 g~dI~~L 417 (487)
- .|..+
T Consensus 322 L-al~~~ 327 (591)
T 1z6t_A 322 L-VVSLI 327 (591)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 34443
No 112
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.80 E-value=6.3e-05 Score=79.03 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=84.6
Q ss_pred CcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEE---------eC---CCCcccHHHHhhcc
Q 011400 300 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 367 (487)
Q Consensus 300 p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIat---------Tn---~p~~Ld~aL~rRf~ 367 (487)
|.|+||||+|.|. ....+.|+..++.. ...++|+++ ++ .|..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999884 23566788888733 223545454 22 16779999999997
Q ss_pred ccccCCCCCHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhchhccCCCCCC
Q 011400 368 KRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 445 (487)
Q Consensus 368 ~~i~~~~Pd~eeR~~IL~~~l~~~~~~~-~~~l~~la~~t-~G~sg~dI~~L~~~A~~~a~rr~~~~le~~~~~~~~d~~ 445 (487)
. +.+++|+.++..++++..+....... +..+..++..+ .| +++..-.+++.|...|..+
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~----------------- 420 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN----------------- 420 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT-----------------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc-----------------
Confidence 7 69999999999999998764333221 12244566665 44 4455555555554333221
Q ss_pred CCCCCCCHHHHHHHHhccC
Q 011400 446 PQIGPIRPEDVEIALKNTR 464 (487)
Q Consensus 446 ~~~~~It~eD~~~AL~~~~ 464 (487)
....|+.+|+.+|+..+-
T Consensus 421 -~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 421 -GKDSIEKEHVEEISELFY 438 (456)
T ss_dssp -TCSSBCHHHHHHHHHHSC
T ss_pred -CCCccCHHHHHHHHHHhc
Confidence 113599999999998653
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.72 E-value=0.00021 Score=66.63 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+...++|.||||+|||+|++.++... +..++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3455678999999999999999999654 455555543
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=0.00019 Score=66.69 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+.+..-++|+||||+|||++++.++...+.++++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 456677999999999999999999986677777777654
No 115
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.72 E-value=0.00047 Score=79.96 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=100.0
Q ss_pred CCCCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 011400 202 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 274 (487)
Q Consensus 202 ~~~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el-------~~~~i~v~~~ 274 (487)
.+.....++|.+...++|.+.+...- ...+-|.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 44456779999999999999874321 234568899999999999999998752 1223344433
Q ss_pred cchh------------h---------ccCCcHHHHHHHHHHHHhc--CCcEEEechhhhHHhhhcccchhhHHHHHHHHH
Q 011400 275 SVVS------------K---------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 331 (487)
Q Consensus 275 ~l~~------------~---------~~g~se~~l~~~f~~a~~~--~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~ 331 (487)
.... . ........+...+...... ++.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 0011122222223222222 36899999997431
Q ss_pred HHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCC-CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhcCCc
Q 011400 332 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 410 (487)
Q Consensus 332 Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~-Pd~eeR~~IL~~~l~~~~~~~~~~l~~la~~t~G~s 410 (487)
.++.+. . ...||.||..+..... + ......+.++. .+.++-.+++................++++.+.|..
T Consensus 250 ---~~~~~~-~--~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 ---VLKAFD-N--QCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp ---HHTTTC-S--SCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred ---HHHhhc-C--CCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 122221 1 2345667776533211 0 11234466665 788888888887764333222333667888888764
Q ss_pred HHHHHH
Q 011400 411 GSDIRL 416 (487)
Q Consensus 411 g~dI~~ 416 (487)
-.|..
T Consensus 322 -Lal~~ 326 (1249)
T 3sfz_A 322 -LVVSL 326 (1249)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 33443
No 116
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=9e-05 Score=74.29 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccch-hh-------ccC----------------C
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D 283 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~-~~-------~~g----------------~ 283 (487)
+++..-++|+||||+|||+++..+|... +...++++..... .. ..| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4566779999999999999999999875 4567777765421 00 000 1
Q ss_pred cH---HHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 284 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 284 se---~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
.+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 123334444455 67899999999998754
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=0.00012 Score=74.69 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccCCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g~se~~l~~~f~~a~~ 297 (487)
+.+..-++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 4566779999999999999999999875 566777776543211 011223333333333445
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..|.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 6789999999988875
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.69 E-value=6.3e-05 Score=71.07 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=49.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecccchh--------hccC---------------Cc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVVS--------KWRG---------------DS 284 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e--l-------~~~~i~v~~~~l~~--------~~~g---------------~s 284 (487)
+.+..-++|+||||+|||++++.++.. . +...++++...... ...+ ..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456667999999999999999999985 2 45677776654100 0001 01
Q ss_pred -HH---HHHHHHHHHHhcCCcEEEechhhhHHh
Q 011400 285 -EK---LIKVLFELARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 285 -e~---~l~~~f~~a~~~~p~IL~IDEiD~L~~ 313 (487)
.. .+..+........|.+|+||++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 11 122233444556789999999988764
No 119
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.65 E-value=0.00019 Score=72.58 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchh-h-------ccC----------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG---------------- 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~-~-------~~g---------------- 282 (487)
.+.+..-++|+||||+|||+++..+|... +...++++...... . ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 35666778999999999999999999873 45677777654211 0 000
Q ss_pred CcH---HHHHHHHHHHHh--cCCcEEEechhhhHHhh
Q 011400 283 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ~se---~~l~~~f~~a~~--~~p~IL~IDEiD~L~~~ 314 (487)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 122223344445 67889999999998754
No 120
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.64 E-value=0.00017 Score=73.76 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=51.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----c------------CCcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----~------------g~se~~l~~~f~~a~~ 297 (487)
+++..-++|+||||+|||+||..++... +.++++++...-.... . ...+..+..+....+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 5677777765422111 0 1122333333333344
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..+.+|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 6789999999999874
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.63 E-value=0.00016 Score=67.50 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566679999999999999999999854
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=0.00016 Score=73.37 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=51.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----ccC------------CcHHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----~~g------------~se~~l~~~f~~a~~ 297 (487)
+.+..-++|+||||+|||+|+..++... +..+++++....... ..| ..+..+..+...++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 566777765432211 011 122333333333445
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 6789999999999874
No 123
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.55 E-value=5.8e-05 Score=68.01 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..|+|.|+||+||||+++.+++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 468999999999999999999999988887765443
No 124
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=6.5e-05 Score=69.20 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=23.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997666654 5555444
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.50 E-value=0.0014 Score=61.77 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA 261 (487)
+.+..-+.|.||+|+|||||++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4566679999999999999999998
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.00028 Score=71.85 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=51.1
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhc----cC-----------CcHHHHHHHHH-HHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH 297 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~----~g-----------~se~~l~~~f~-~a~~ 297 (487)
+++..-++|+||||+|||+||..++... +.++++++........ .| .....+..++. ..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4566779999999999999999998765 5677888764322110 00 11222233332 3345
Q ss_pred cCCcEEEechhhhHHh
Q 011400 298 HAPSTIFLDEIDAIIS 313 (487)
Q Consensus 298 ~~p~IL~IDEiD~L~~ 313 (487)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999874
No 127
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.44 E-value=0.00021 Score=68.04 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=43.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------chhhccCCc-----HHHHHHHHHHHHh----cCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 300 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~-------l~~~~~g~s-----e~~l~~~f~~a~~----~~p 300 (487)
..-++++||+|+|||+++..++..+ +..++.+.... +.+. .|.. ......++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3457889999999999999888766 55666664221 1111 1100 0011234444444 347
Q ss_pred cEEEechhhhH
Q 011400 301 STIFLDEIDAI 311 (487)
Q Consensus 301 ~IL~IDEiD~L 311 (487)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
No 128
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.43 E-value=8e-05 Score=67.62 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+.|+|.|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999988764
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.40 E-value=0.00029 Score=72.89 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccchhh--------ccCC---------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK--------WRGD--------------- 283 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------~~~~i~v~~~~l~~~--------~~g~--------------- 283 (487)
.+.+..-++|+||||+|||+|++.++-.. +...++++..+.... ..|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 35666779999999999999999876433 234677766442110 0010
Q ss_pred -c---HHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 284 -S---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 284 -s---e~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
. ...+..+...+....|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1 112223334444567899999999887653
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00038 Score=84.27 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.2
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhhcc----------------CCcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~~~----------------g~se~~l~~~f~~a~ 296 (487)
++++...++|+||||||||+||.+++.+. |.+.++++..+...... ...+...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46778899999999999999999998765 77788888766533221 112223333333445
Q ss_pred hcCCcEEEechhhhHHhh
Q 011400 297 HHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~~ 314 (487)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999998554
No 131
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.38 E-value=0.00091 Score=70.15 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=35.5
Q ss_pred hhcCCCCCCCCccc-CcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 197 IIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 197 ~~~~~~~~~~~di~-G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+...+.+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34455667788775 555555555555432 12379999999999999999999877
No 132
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.36 E-value=0.00038 Score=69.42 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=51.0
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEecccch-hh----c---cC------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV-SK----W---RG------ 282 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---------------~----~~~i~v~~~~l~-~~----~---~g------ 282 (487)
.+++..-++|+||||+|||++|..+|... | ..+++++...-. .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34566779999999999999999999753 2 467777765421 00 0 00
Q ss_pred ----------CcH---HHHHHHHHHHHh-cCCcEEEechhhhHHhh
Q 011400 283 ----------DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 283 ----------~se---~~l~~~f~~a~~-~~p~IL~IDEiD~L~~~ 314 (487)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 111 122233344444 56789999999998753
No 133
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.00012 Score=67.81 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+...++|.||||+||||+++.+|+.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3456799999999999999999999999887654
No 134
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.34 E-value=0.00056 Score=69.35 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=31.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISASS 275 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~---------~~~i~v~~~~ 275 (487)
+.+..-+.|+||||+|||+|++.++.... -..++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 56667799999999999999999998762 3557776543
No 135
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.32 E-value=0.0023 Score=68.57 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=90.6
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEecccc-----h
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTTF---FNISASSV-----V 277 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~----el~~~~---i~v~~~~l-----~ 277 (487)
+|.+..+++|.+.+...- ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999999999884320 02346788999999999999999997 232221 22332221 0
Q ss_pred -------hhcc------------CCcHHHHHHHHHH-HHhcCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011400 278 -------SKWR------------GDSEKLIKVLFEL-ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 337 (487)
Q Consensus 278 -------~~~~------------g~se~~l~~~f~~-a~~~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld 337 (487)
.... ......+...+.. ....+..+|+||+++.... + .+...
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--------------~--~~~~~-- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--------------I--RWAQE-- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--------------H--HHHHH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--------------h--ccccc--
Confidence 0000 0011122222332 2332368999999975310 0 11110
Q ss_pred CCcCCCCcEEEEEEeCCCCcccHHHHhhccccccCCCCCHHHHHHHHHHhCCCCCCCCCCC----HHHHHHHhcCCcHHH
Q 011400 338 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP----YDLLVERTEGYSGSD 413 (487)
Q Consensus 338 ~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~~~i~~~~Pd~eeR~~IL~~~l~~~~~~~~~~----l~~la~~t~G~sg~d 413 (487)
.+ ..||.||....... .. ......+.++..+.++-.+++......... ... ...+++.+.|.. -.
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlP-LA 332 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-AA-SQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNP-AT 332 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-GC-CSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH-HH
T ss_pred ----CC--CEEEEEcCCHHHHH-Hc-CCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCCh-HH
Confidence 22 23556776532211 00 012245778888999999999988533221 112 345667777654 33
Q ss_pred HHH
Q 011400 414 IRL 416 (487)
Q Consensus 414 I~~ 416 (487)
|..
T Consensus 333 l~~ 335 (549)
T 2a5y_B 333 LMM 335 (549)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.32 E-value=0.0017 Score=61.19 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.||||+|||+++..++... +...++++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4566779999999999999998887654 556666654
No 137
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.30 E-value=0.0022 Score=68.93 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=51.5
Q ss_pred cEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHH
Q 011400 301 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 378 (487)
Q Consensus 301 ~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~e 378 (487)
.+|+|||+..+..... ......+..+.. ..+.-.|.+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~------~~~~~~L~~Iar-----~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------KKVEELIARIAQ-----KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC------HHHHHHHHHHHH-----HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh------HHHHHHHHHHHH-----HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998875321 111122222222 12344578888999997 7999999999888999999988
Q ss_pred HHHHHHH
Q 011400 379 ARRAMFE 385 (487)
Q Consensus 379 eR~~IL~ 385 (487)
+...|+-
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887774
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.29 E-value=0.00094 Score=64.21 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445679999999999999999999999877777776655
No 139
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.26 E-value=0.0054 Score=64.04 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh---------
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------- 279 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~--------- 279 (487)
.+.+++.+.+.+...+..+......-.++.-+++.|++|+||||++..+|..+ |..+..+++......
T Consensus 72 ~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 72 KEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 34455555555544332211111111346778999999999999999999876 666666665432110
Q ss_pred -----------ccCCcHHHHHHHHHHHHhcCCcEEEechhh
Q 011400 280 -----------WRGDSEKLIKVLFELARHHAPSTIFLDEID 309 (487)
Q Consensus 280 -----------~~g~se~~l~~~f~~a~~~~p~IL~IDEiD 309 (487)
........+...+..++...+.+++||..-
T Consensus 152 ~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 152 DRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAG 192 (443)
T ss_dssp GGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred HhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 011233445666777777778999999874
No 140
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00021 Score=63.61 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4889999999999999999999998876554
No 141
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.22 E-value=0.0002 Score=64.82 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999877654
No 142
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00028 Score=64.13 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+.-|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 456789999999999999999999999877653
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.002 Score=64.16 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=46.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh-------c-------------cCCcHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-------W-------------RGDSEKLIKVLFEL 294 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~-------~-------------~g~se~~l~~~f~~ 294 (487)
.++.-++|.||+|+||||++..+|..+ +..+..+++...... | .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456678999999999999999999876 455555544221100 0 01122222334555
Q ss_pred HHhcCCcEEEechhh
Q 011400 295 ARHHAPSTIFLDEID 309 (487)
Q Consensus 295 a~~~~p~IL~IDEiD 309 (487)
+....|.+++||+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 566778999999874
No 144
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.17 E-value=0.00021 Score=64.85 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887654
No 145
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.15 E-value=0.00025 Score=63.43 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..++|.|+|||||||+++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4699999999999999999999999988764
No 146
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.14 E-value=0.00029 Score=63.48 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.++|.||||+||||+++.+|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987765
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00058 Score=67.25 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.+..++|.||||+||||+++.++.+++..++.+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 456789999999999999999999986566777764443
No 148
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.11 E-value=0.00036 Score=62.40 Aligned_cols=30 Identities=30% Similarity=0.750 Sum_probs=26.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.|.||+|+||||+++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999875543
No 149
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.10 E-value=0.004 Score=57.88 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc---------cchhhcc-------------CC----cHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------GD----SEKLIKVL 291 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~---------~l~~~~~-------------g~----se~~l~~~ 291 (487)
..|++|+++|.||||+|-++|-.. |.++..+... .+..... .. ........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 358999999999999999998866 7777666321 1222210 00 12333444
Q ss_pred HHHHHh----cCCcEEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCCcccHHHHhhcc
Q 011400 292 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 367 (487)
Q Consensus 292 f~~a~~----~~p~IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~~Ld~aL~rRf~ 367 (487)
+..++. ..+.+|+|||+-....-.- .+ ...++..+. .+....-||.|+|.+ ++.|...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~-------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP-------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC-------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC-------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 554444 3578999999976543211 01 112445554 344445577788864 567776555
Q ss_pred ccc
Q 011400 368 KRI 370 (487)
Q Consensus 368 ~~i 370 (487)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 443
No 150
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0011 Score=66.26 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=48.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccchhh----ccC-----------CcHHHH-HHHHHH-
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----WRG-----------DSEKLI-KVLFEL- 294 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el-----~~~~i~v~~~~l~~~----~~g-----------~se~~l-~~~f~~- 294 (487)
+.+. -++|+||||+|||+|+-.++.+. +..+++++..+-... ..| .+...+ -.+.+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3444 58999999999999988876654 567788876543211 001 111222 222222
Q ss_pred --HHhcCCcEEEechhhhHHh
Q 011400 295 --ARHHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 295 --a~~~~p~IL~IDEiD~L~~ 313 (487)
.+...|.+|+||-+..+.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2456799999999999974
No 151
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.10 E-value=0.00027 Score=64.54 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH-hCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e-l~~~~i~v 271 (487)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 68766554
No 152
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00031 Score=63.68 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+.-|+|.|+||+||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4568999999999999999999999977654
No 153
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.08 E-value=0.00034 Score=64.50 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999886654
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.08 E-value=0.00033 Score=63.72 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
.++..+.|.||||+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 455678999999999999999999987777777765543
No 155
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.08 E-value=0.0012 Score=62.74 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=26.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..|++.|+||+|||+++-.+|..+ |..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666654444
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.07 E-value=0.00078 Score=80.63 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=52.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----hccC------------CcHHHHHHHHHHHH
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 296 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----~~~g------------~se~~l~~~f~~a~ 296 (487)
.+.++..++|+||||+|||+||..+|..+ +.++.+++...... ...| ..+..+..+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35677889999999999999999998876 45777777654331 1111 11222222222233
Q ss_pred hcCCcEEEechhhhHHh
Q 011400 297 HHAPSTIFLDEIDAIIS 313 (487)
Q Consensus 297 ~~~p~IL~IDEiD~L~~ 313 (487)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.05 E-value=0.00035 Score=63.63 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
++.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999876654
No 158
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.0055 Score=57.59 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccchhhc-------------------------------
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSKW------------------------------- 280 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~e----l~~~~i~v~~~~l~~~~------------------------------- 280 (487)
++++..-++|+|+||+|||++|..+|.. .+.++++++...-....
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 3456677999999999999999887653 25667666543211000
Q ss_pred -----------cCCcHHHHHHHHHHHHhcCCcEEEechhhhHHhh
Q 011400 281 -----------RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 314 (487)
Q Consensus 281 -----------~g~se~~l~~~f~~a~~~~p~IL~IDEiD~L~~~ 314 (487)
.......+..+........+.++++|.+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 0001223344455566678899999999988654
No 159
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.05 E-value=0.00058 Score=73.91 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=25.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
..++|.||||||||+++.+++..+ +.++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 568999999999999999998865 5555544
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.05 E-value=0.008 Score=63.94 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=49.3
Q ss_pred EEEechhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcCCCCcEEEEEEeCCCC--cccHHHHhhccccccCCCCCHHH
Q 011400 302 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 379 (487)
Q Consensus 302 IL~IDEiD~L~~~r~~~~~~~~~~~~i~~~Ll~~ld~~~~~~~~VlVIatTn~p~--~Ld~aL~rRf~~~i~~~~Pd~ee 379 (487)
+|+|||+..+.... ......++..+... .+.-.+.+|.+|.+|. .++..+++.|...+.+...+..+
T Consensus 300 vlvIDE~~~ll~~~------~~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMTV------GKKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHHH------HHHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhhh------hHHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 89999998876421 01111222222221 1222466778898886 58999999998889999999999
Q ss_pred HHHHHHH
Q 011400 380 RRAMFES 386 (487)
Q Consensus 380 R~~IL~~ 386 (487)
.+.++..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8888754
No 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.02 E-value=0.0013 Score=63.43 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e---l~~~~i~v~~~~l~ 277 (487)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 356899999999999999999998 68888766655443
No 162
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.02 E-value=0.0004 Score=67.07 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
-++|.|||||||||+|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887664
No 163
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00032 Score=62.09 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
-|+|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4889999999999999999 8888887654
No 164
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.01 E-value=0.00052 Score=64.24 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+|+.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45699999999999999999999999876554
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.01 E-value=0.00038 Score=69.90 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+..++|.||+|+|||++++.+|+.++..++.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 356899999999999999999999998888886543
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.98 E-value=0.00047 Score=62.37 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=26.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..++|.|+||+||||+++.+++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999876544
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.98 E-value=0.00051 Score=61.27 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999987665
No 168
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.0032 Score=56.69 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.3
Q ss_pred CCeeEEEEcCCCChHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKA 259 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAra 259 (487)
++.-+.|.||+|+|||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445689999999999999994
No 169
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.94 E-value=0.00048 Score=61.71 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=22.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHH-HhCCc
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT-ECKTT 267 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~-el~~~ 267 (487)
.-|+|.|+||+||||+++.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4689999999999999999998 45543
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.93 E-value=0.00055 Score=65.59 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
++..|+|.||||+||||+++.+++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 556799999999999999999999998766654
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.92 E-value=0.0005 Score=62.78 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 34699999999999999999999999665543
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.92 E-value=0.00044 Score=62.34 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.-|+|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998876
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.92 E-value=0.00047 Score=64.97 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45699999999999999999999998776654
No 174
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.91 E-value=0.00047 Score=64.24 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998876655
No 175
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.91 E-value=0.00071 Score=62.37 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=27.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45699999999999999999999998776653
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.91 E-value=0.0008 Score=60.81 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999766554
No 177
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.90 E-value=0.0005 Score=63.98 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999877654
No 178
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.90 E-value=0.00057 Score=61.80 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.-++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00053 Score=60.96 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999877653
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.0068 Score=63.14 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----------h------cc---C-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K------WR---G-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----------~------~~---g-~se~~l~~~f~~a 295 (487)
++.-+++.||+|+||||++..+|..+ +..+..+++..... . +. + .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999999866 66666555432110 0 00 1 1122334445555
Q ss_pred HhcCCcEEEechhhh
Q 011400 296 RHHAPSTIFLDEIDA 310 (487)
Q Consensus 296 ~~~~p~IL~IDEiD~ 310 (487)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556789999998843
No 181
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00064 Score=62.58 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|+|.|+||+||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766554
No 182
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.88 E-value=0.00081 Score=63.68 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+..|+|.|+||+||||+++.||+.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999776654
No 183
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.87 E-value=0.0009 Score=60.04 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=26.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
...++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4568999999999999999999998765543
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.00076 Score=63.85 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=31.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
...++-|+|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 35567789999999999999999999998654 4555554
No 185
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.80 E-value=0.001 Score=61.40 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=26.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
++.-+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4456899999999999999999999976443
No 186
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.80 E-value=0.00056 Score=69.46 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=38.0
Q ss_pred cCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 210 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 210 ~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..+.+.+.+...+...+.. ....+++|.||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 44556666666665443321 122469999999999999999999999888754
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.80 E-value=0.0009 Score=63.84 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=27.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.-+.|.||+|+||||+++.|++.+|...+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 345679999999999999999999999876543
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.77 E-value=0.0016 Score=66.31 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=44.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec-ccchh---------hccCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~-~~l~~---------~~~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
+...+++.||+|+||||+.++++..+ +..++.+.- .++.. ...+.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 33468999999999999999998876 334443321 11100 00111111233466667778999999
Q ss_pred echhh
Q 011400 305 LDEID 309 (487)
Q Consensus 305 IDEiD 309 (487)
+||.-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99983
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00077 Score=63.17 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..|+|.||||+||||+++.+|+.++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3569999999999999999999999975544
No 190
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.75 E-value=0.00092 Score=62.58 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..|+|.|+||+||||+++.+|+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877654
No 191
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.74 E-value=0.001 Score=62.39 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccch
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 277 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l~ 277 (487)
.++|.||||+||+|.|+.||+.++.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987654 444543
No 192
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.72 E-value=0.01 Score=57.55 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-++|+||+|+|||+|+..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456679999999999999999998754
No 193
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.72 E-value=0.00029 Score=59.48 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhhhhhhhhhhhcccCCCcee--eeccCCCcccceeeeeecCc-cchH--HH----HHHHHHHHHHHHHHH
Q 011400 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAGC-CSVE--TE----RERFFFFLIFILSAI 84 (487)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~~~~~~~~~~~~~~~ 84 (487)
+..+..||+.+|.+++-+|.-|+.|.++-| +|..|+.++..|++|.+.|+ |+.. ++ .+||..++.....+|
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL 91 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRL 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999998 99999999999999999986 5554 23 345888888888888
Q ss_pred HHHHhh
Q 011400 85 SLLLRL 90 (487)
Q Consensus 85 ~~~~~~ 90 (487)
- .|.-
T Consensus 92 ~-~Le~ 96 (116)
T 2dl1_A 92 E-ILEK 96 (116)
T ss_dssp H-HHHH
T ss_pred H-HHHh
Confidence 4 4443
No 194
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.70 E-value=0.0017 Score=58.56 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~ 275 (487)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34568899999999999999999988 88888887543
No 195
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.69 E-value=0.00086 Score=66.86 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~~l 276 (487)
+.-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999988877765444
No 196
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.68 E-value=0.0014 Score=59.29 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
-|.|.|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887764
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.68 E-value=0.00091 Score=65.02 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=43.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc---h--------hhccCCcHHHHHHHHHHHHhcCCcE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV---V--------SKWRGDSEKLIKVLFELARHHAPST 302 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l---~--------~~~~g~se~~l~~~f~~a~~~~p~I 302 (487)
.+..-++|.||+|+||||++++++..+. ..++.. ...+ . ....|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 3556789999999999999999998652 222221 1111 0 0001101122355566666678999
Q ss_pred EEechhh
Q 011400 303 IFLDEID 309 (487)
Q Consensus 303 L~IDEiD 309 (487)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999983
No 198
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.67 E-value=0.0012 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877665
No 199
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.65 E-value=0.0014 Score=60.05 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el-~~~~i~v~ 272 (487)
+.-|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777664
No 200
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.011 Score=58.52 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 011400 213 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 274 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~ 274 (487)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34556665555443322211 1112345678999999999999999999765 5566666543
No 201
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.0016 Score=60.05 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=29.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.++.-+.|.||+|+||||+++.++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678899999999999999999988 554445554433
No 202
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.009 Score=62.48 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5666779999999999999999998854 556777664
No 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.63 E-value=0.019 Score=65.88 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=35.5
Q ss_pred ccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 209 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 209 i~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+|.+..+++|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 399999999999887431 12356889999999999999999863
No 204
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.61 E-value=0.0013 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986653
No 205
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.59 E-value=0.0018 Score=60.46 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999876654
No 206
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.57 E-value=0.0018 Score=59.85 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.|+|.||+|+|||+|++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999988763
No 207
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.57 E-value=0.0015 Score=61.49 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998765443
No 208
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.56 E-value=0.00093 Score=60.38 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK---TTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~---~~~i~v~ 272 (487)
-|+|.|+||+||||+++.+++.++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 488999999999999999999885 3355554
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.55 E-value=0.0019 Score=58.66 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
|.|.|++|+||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887654
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.54 E-value=0.013 Score=61.18 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666779999999999999999998754 556777665
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0013 Score=60.49 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|.|.|++|+||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887766543
No 212
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.44 E-value=0.002 Score=59.11 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+.-|+|.|+||+||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999998763
No 213
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.42 E-value=0.006 Score=58.02 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.+++.||+|+|||.++..++...+.+++.+..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 49999999999999999999988766665543
No 214
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.41 E-value=0.0023 Score=58.66 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.+.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998777643
No 215
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.37 E-value=0.0027 Score=60.74 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
+..+.|.||||+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3568999999999999999999999976654
No 216
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.34 E-value=0.0011 Score=61.17 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+.-|+|.|+||+||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987543
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.0036 Score=63.95 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=43.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-cch--h--hcc-----CCcHHHHHHHHHHHHhcCCcEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SVV--S--KWR-----GDSEKLIKVLFELARHHAPSTI 303 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~-~l~--~--~~~-----g~se~~l~~~f~~a~~~~p~IL 303 (487)
.+...++|.||+|+||||++++++..+. ..++.+... ++. . .++ |.....+...+..+-...|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3456689999999999999999998652 333333211 100 0 001 1011122345555556789999
Q ss_pred Eechhh
Q 011400 304 FLDEID 309 (487)
Q Consensus 304 ~IDEiD 309 (487)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 218
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.32 E-value=0.0031 Score=57.59 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+..|.|.|++|+||||+++.+++. |.+++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3456899999999999999999998 7766543
No 219
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.32 E-value=0.0028 Score=61.22 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
...|.|.|++|+||||+++.+|..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45799999999999999999999999887764
No 220
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0013 Score=60.67 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|+|.|+||+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345699999999999999999999874
No 221
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0025 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.|.||+|+||||+++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999988 7877654
No 222
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.26 E-value=0.023 Score=51.97 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||.++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877653
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.24 E-value=0.0026 Score=58.73 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=24.9
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999885
No 224
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0046 Score=56.02 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=28.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++..++|.|+||+||||+++.++..+ +.++..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 45668999999999999999999987 3445555543
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.23 E-value=0.0025 Score=58.97 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.|.|+|++||||||+++.+++.+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 477999999999999999999989877654
No 226
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.21 E-value=0.0046 Score=59.16 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecccch
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 277 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~--------~i~v~~~~l~ 277 (487)
+.-|.|.|++|+||||+++.|+..++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4568899999999999999999999876 3356665553
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.21 E-value=0.0026 Score=64.11 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
+.-|+|.||+|+|||+|+..||+.++..++..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35689999999999999999999999888776543
No 228
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.18 E-value=0.014 Score=54.23 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=26.9
Q ss_pred CeeEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEec
Q 011400 240 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISA 273 (487)
Q Consensus 240 ~~gvLL~GppGtGKT-~LAraiA~el--~~~~i~v~~ 273 (487)
..-.++|||.|+||| .|.+++.+.. +..++.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 345788999999999 8999987754 677777764
No 229
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.16 E-value=0.0042 Score=59.66 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=27.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
...+.|.||+|+||||+++.+|+.+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3568899999999999999999999986653
No 230
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.14 E-value=0.0046 Score=57.53 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35689999999999999999998 78766553
No 231
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.12 E-value=0.058 Score=56.94 Aligned_cols=79 Identities=6% Similarity=-0.097 Sum_probs=46.5
Q ss_pred hhhhcCCCCCCCCcccCcHHHHHHHHHHHhc------cc-cCchh--hcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh-
Q 011400 195 RDIIRGSPDVKWESIKGLENAKRLLKEAVVM------PI-KYPKY--FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC- 264 (487)
Q Consensus 195 ~~~~~~~~~~~~~di~G~e~~k~~L~e~l~~------~l-~~~~~--~~~~~~~~~gvLL~GppGtGKT~LAraiA~el- 264 (487)
.+......+...+.++...+..+.+.+.... +. ..+.+ ...++.+..-++|.|+||+|||+++..+|...
T Consensus 188 ~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~~~~~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 188 MEQVWNAGPWIPDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHTTCCCCCCSSEEEGGGGHHHHHHHHHHSCTTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHhcChHHHHHHHHhhhcccccCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 3344444445556666544555555443310 01 11111 11235666779999999999999999998865
Q ss_pred ---CCcEEEEec
Q 011400 265 ---KTTFFNISA 273 (487)
Q Consensus 265 ---~~~~i~v~~ 273 (487)
+.++..++.
T Consensus 268 ~~~g~~vl~~s~ 279 (503)
T 1q57_A 268 TAMGKKVGLAML 279 (503)
T ss_dssp TTSCCCEEEEES
T ss_pred HhcCCcEEEEec
Confidence 456777664
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.09 E-value=0.038 Score=54.79 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=29.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4566779999999999999999998765 456666654
No 233
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.07 E-value=0.0052 Score=58.13 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
++..+.|.|++|+||||+++.++..+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44568999999999999999999999977654
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.07 E-value=0.003 Score=58.33 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=26.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFN 270 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el-~~~~i~ 270 (487)
.++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 445568899999999999999999987 554443
No 235
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.06 E-value=0.0072 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.+.-|+|.|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 44568899999999999999999988765443
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.05 E-value=0.041 Score=54.93 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
..++.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3556779999999999999999999866 555555544
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.01 E-value=0.0044 Score=57.50 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l 276 (487)
++.-++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456789999999999999999999764 55777765433
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.00 E-value=0.0038 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568999999999999999999976
No 239
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.00 E-value=0.0037 Score=62.76 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-chh----h---ccCCcHHHHHHHHHHHHhcCCcEEEechh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVS----K---WRGDSEKLIKVLFELARHHAPSTIFLDEI 308 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~-l~~----~---~~g~se~~l~~~f~~a~~~~p~IL~IDEi 308 (487)
+...++|.||+|+||||++++++.... ...+.+.... +.. . +........+..+..+-...|.+|++||.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 345799999999999999999999763 2344444321 110 0 11001122344556666788999999998
Q ss_pred h
Q 011400 309 D 309 (487)
Q Consensus 309 D 309 (487)
-
T Consensus 250 ~ 250 (330)
T 2pt7_A 250 R 250 (330)
T ss_dssp C
T ss_pred C
Confidence 4
No 240
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0052 Score=57.05 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
..+.|.|++|+|||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999999876654
No 241
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.92 E-value=0.097 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++..|+|.|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999766 666666665
No 242
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=95.92 E-value=0.0012 Score=53.03 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhccc---CCCc--eeeeccCCCcccceeeeeecCccchHHHHHH----HHHHHHHHHHHH
Q 011400 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETERER----FFFFLIFILSAI 84 (487)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 84 (487)
..+..||+.+|.+++-+|.-|+. |.++ +-+|..|+.+...|++|.+.|-|..-+++++ |...+.-...+|
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999 9898 6689999999999999999998888888776 555555555555
No 243
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.86 E-value=0.0053 Score=60.03 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 269 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el-~~~~i 269 (487)
.-|+|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 54444
No 244
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.85 E-value=0.034 Score=63.14 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+..-++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3455689999999999999999875
No 245
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.83 E-value=0.0049 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999999875
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.0055 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
..-+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34688999999999999999998764
No 247
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.82 E-value=0.0059 Score=60.93 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=28.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.-++|.||+|+|||+|+..+|+.++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999999877666554
No 248
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.81 E-value=0.013 Score=54.23 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
..-.+++||+|+|||+.+-.++..+ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3457889999999999988888766 56655553
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.073 Score=56.23 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.++.-++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3556678999999999999999999876
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.81 E-value=0.0059 Score=55.33 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
-++|.||+|+||||+++.++...+.. +.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~ 34 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEG 34 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcc
Confidence 47899999999999999999865432 34443
No 251
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.78 E-value=0.022 Score=52.38 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=27.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++.-+.|.||+|+||||+++.++..+ +.+++.++.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 34568899999999999999999876 555655543
No 252
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.78 E-value=0.0073 Score=59.05 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4568999999999999999999 678766543
No 253
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.76 E-value=0.0052 Score=61.99 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
.-|+|.||+|+|||++|+.||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999876666543
No 254
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.75 E-value=0.064 Score=49.47 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=32.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhc-cccCch-hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 204 VKWESIKGLENAKRLLKEAVVM-PIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~-~l~~~~-~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+|+++.-.+.+.+.|.+.-.. +..+.. .... +...+.+++.+|+|+|||..+-..+-+.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQ-AILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHH-HHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 3477776566666666542110 100000 0011 1123569999999999998766555443
No 255
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.74 E-value=0.068 Score=49.33 Aligned_cols=58 Identities=19% Similarity=0.045 Sum_probs=31.6
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchh---hcCCCCCCeeEEEEcCCCChHHHH-HHHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKY---FTGLLSPWKGILLFGPPGTGKTML-AKAVATE 263 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~---~~~~~~~~~gvLL~GppGtGKT~L-AraiA~e 263 (487)
.+|+++.-.+.+.+.+.+.-.. ..++.. +.. +...+.+++.+|+|+|||.. +-.+...
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~-~~~~~Q~~~i~~-~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFE-EPSAIQQRAIMP-IIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCC-SCCHHHHHHHHH-HHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCC-CCcHHHHHHHHH-HhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4577776666666666543110 001100 011 12336799999999999987 3344443
No 256
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.71 E-value=0.044 Score=59.84 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 212 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 212 ~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
.+.+++.+..++.. ..-.||+||||||||+.+-.+..++ +.++..+..
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 56677777766532 1237899999999998655554433 555555443
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.70 E-value=0.0069 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
No 258
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.68 E-value=0.19 Score=52.27 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccchhh----------------cc---C-CcHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR---G-DSEKLIKVLFE 293 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~~~l~~~----------------~~---g-~se~~l~~~f~ 293 (487)
.+++.+++.|++|+||||++-.+|..+ |..+..+++...... +. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356788999999999999999998765 667777766532110 00 0 11233355666
Q ss_pred HHHhcCCcEEEechh
Q 011400 294 LARHHAPSTIFLDEI 308 (487)
Q Consensus 294 ~a~~~~p~IL~IDEi 308 (487)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 666555689999875
No 259
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.68 E-value=0.023 Score=60.59 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.+.-|+|.|.||+||||+++.++..+ +.....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 34568999999999999999999988 455555555443
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.68 E-value=0.11 Score=51.12 Aligned_cols=69 Identities=23% Similarity=0.103 Sum_probs=44.8
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------ccC----CcHHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRG----DSEKLIKVLFELAR 296 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~g----~se~~l~~~f~~a~ 296 (487)
+.-+++.|++|+||||++..+|..+ +..+..+++...... +.+ .....+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 566666654321100 001 12233345666666
Q ss_pred hcCCcEEEechh
Q 011400 297 HHAPSTIFLDEI 308 (487)
Q Consensus 297 ~~~p~IL~IDEi 308 (487)
.....+++||=.
T Consensus 178 ~~~~D~ViIDTp 189 (297)
T 1j8m_F 178 SEKMEIIIVDTA 189 (297)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEeCC
Confidence 556689999975
No 261
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.68 E-value=0.031 Score=57.93 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchhhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+++++.-....+..|..++. .+...++|.||+|+||||++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 345565544444455555431 2334589999999999999999999874
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.66 E-value=0.0053 Score=57.27 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~ 273 (487)
..++++|.||+|+|||++|..+++..+ +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 457899999999999999999999876 6555443
No 263
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.65 E-value=0.028 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.5
Q ss_pred eeEEEEcCCCChHHHHH-HHHHHH
Q 011400 241 KGILLFGPPGTGKTMLA-KAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA-raiA~e 263 (487)
+.+++.+|+|+|||..+ -.+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 57999999999999864 334443
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.64 E-value=0.056 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999876
No 265
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.63 E-value=0.0077 Score=55.94 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
-|.|.|++|||||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999884
No 266
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.63 E-value=0.042 Score=55.33 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=29.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
+.+..-++|.|+||+|||+++..+|... +.++..++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3566679999999999999999998864 666666654
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.59 E-value=0.0081 Score=55.37 Aligned_cols=27 Identities=33% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
++.-+.|.||+|+||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345688999999999999999999887
No 268
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.58 E-value=0.0081 Score=61.91 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
+.-++|.||+|+|||+|+..+|..++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 345889999999999999999999987776654
No 269
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.51 E-value=0.0072 Score=55.74 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++.+.|.||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445699999999999999999998763
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.46 E-value=0.0081 Score=55.62 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455688999999999999999999874
No 271
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.37 E-value=0.053 Score=61.74 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
..-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999954
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.36 E-value=0.051 Score=57.80 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=49.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------------c----c--CCcH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----R--GDSE 285 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------------~----~--g~se 285 (487)
+.+...++|.||+|+|||+|++.++... |.+.+++...+-... + . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 3455679999999999999999998765 444555543221000 0 0 0123
Q ss_pred HHHHHHHHHHHhcCCcEEEechhhhHH
Q 011400 286 KLIKVLFELARHHAPSTIFLDEIDAII 312 (487)
Q Consensus 286 ~~l~~~f~~a~~~~p~IL~IDEiD~L~ 312 (487)
...+.++..+....|.+|+||=+..+.
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 455566677777889999999665554
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.29 E-value=0.0098 Score=54.05 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=21.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998763
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.27 E-value=0.085 Score=55.02 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred CCCCCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 236 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 236 ~~~~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
++.+..-++|.|+||+|||+++-.+|... |.++..++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 35666779999999999999999998765 667777764
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.19 E-value=0.012 Score=62.55 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=43.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-chhh---c--------cCCcHHHHHHHHHHHHhcCCcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 304 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~~-l~~~---~--------~g~se~~l~~~f~~a~~~~p~IL~ 304 (487)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... + .+...-.+...+..+-.+.|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 345799999999999999999998773 3455554322 2100 0 011111233344455567899999
Q ss_pred echh
Q 011400 305 LDEI 308 (487)
Q Consensus 305 IDEi 308 (487)
++|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9987
No 276
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.18 E-value=0.0013 Score=68.77 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCcCCCCcEEEEEE-eCCCCcccHHHHh--hccccccCCCCCHH-HHHHHH
Q 011400 324 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 384 (487)
Q Consensus 324 ~~~~i~~~Ll~~ld~~~~~~~~VlVIat-Tn~p~~Ld~aL~r--Rf~~~i~~~~Pd~e-eR~~IL 384 (487)
..+++++.|+..||++..... + +++ ||+|+.+|++|++ ||++.|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 446788899999998865433 3 444 9999999999998 99999999999987 677765
No 277
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.13 E-value=0.03 Score=55.45 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhccccCch---hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 213 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~---~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+.+.+...+.... ...--..++.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555666655544332221 111113456678999999999999999999976
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.12 E-value=0.016 Score=51.78 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345568899999999999999999987
No 279
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.09 E-value=0.061 Score=52.90 Aligned_cols=70 Identities=24% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchh----------------hc---cC-CcHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------------KW---RG-DSEKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~----------------~~---~g-~se~~l~~~f~~a 295 (487)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... .+ .+ ......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678888999999999999999866 45555554321100 00 01 1122335566666
Q ss_pred HhcCCcEEEechh
Q 011400 296 RHHAPSTIFLDEI 308 (487)
Q Consensus 296 ~~~~p~IL~IDEi 308 (487)
....+.+|+||+-
T Consensus 177 ~~~~~D~viiDtp 189 (295)
T 1ls1_A 177 RLEARDLILVDTA 189 (295)
T ss_dssp HHHTCCEEEEECC
T ss_pred HhCCCCEEEEeCC
Confidence 5567789999997
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.08 E-value=0.0063 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999885
No 281
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.08 E-value=0.014 Score=54.31 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++-+.|.||+|+|||+|++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998765
No 282
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.03 E-value=0.019 Score=62.51 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
.+.-|+|.|.||+||||+++.+++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34568999999999999999999999 999998875433
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.03 E-value=0.1 Score=54.28 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 274 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~ 274 (487)
++..++|.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4566666653
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.01 E-value=0.019 Score=54.33 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 270 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~ 270 (487)
.+.-+.|.||||+||||+++.+++.++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 445688999999999999999999986 34443
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.99 E-value=0.015 Score=53.67 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||+|+|||||++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4455688999999999999999999874
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.97 E-value=0.014 Score=54.62 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+|||||++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455668999999999999999999976
No 287
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.95 E-value=0.095 Score=47.60 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.5
Q ss_pred eeEEEEcCCCChHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAr 258 (487)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999997544
No 288
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.90 E-value=0.016 Score=53.15 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 011400 243 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 275 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el~~~~i~v~~~~ 275 (487)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 289
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.87 E-value=0.037 Score=52.08 Aligned_cols=32 Identities=13% Similarity=-0.050 Sum_probs=24.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 335689999999999888887755 66666664
No 290
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.86 E-value=0.018 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFN 270 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~ 270 (487)
.-|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 457899999999999999999999998865
No 291
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.82 E-value=0.02 Score=54.55 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v 271 (487)
.+-|.||||+||||+++.|++.++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 477899999999999999999998876644
No 292
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.81 E-value=0.097 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.8
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||..+-
T Consensus 67 ~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp TCCEEECCCSSHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 3679999999999997643
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.81 E-value=0.15 Score=52.81 Aligned_cols=70 Identities=26% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccchhh----------------cc---CCc-HHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WR---GDS-EKLIKVLFELA 295 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l~~~----------------~~---g~s-e~~l~~~f~~a 295 (487)
++..+++.|++|+||||++..+|..+ +..+..+++...... +. +.. .......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 56678899999999999999999876 455555554211100 00 011 22335566666
Q ss_pred HhcCCcEEEechh
Q 011400 296 RHHAPSTIFLDEI 308 (487)
Q Consensus 296 ~~~~p~IL~IDEi 308 (487)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455679999854
No 294
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.80 E-value=0.018 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.++.-+.|.||+|+|||||++.++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556688999999999999999999764
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.79 E-value=0.035 Score=56.32 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhccccCch---hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 213 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 213 e~~k~~L~e~l~~~l~~~~---~~~~~~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+.+.+...+.... ...--..++.-+.|.||.|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4556666655544333221 111113456778999999999999999999976
No 296
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.78 E-value=0.021 Score=54.30 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344558899999999999999999988753
No 297
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.78 E-value=0.079 Score=56.31 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISA 273 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LArai--A~el--~~~~i~v~~ 273 (487)
.+...++|.||+|+|||||++.+ +... +...++++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45567999999999999999994 4433 344555544
No 298
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.76 E-value=0.063 Score=56.31 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999988754
No 299
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.75 E-value=0.086 Score=58.86 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=33.2
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCch-hhcCCCCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPK-YFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~-~~~~~~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+|+++.-.+...+.+.+.-..|..... -+...+.....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3466665555555555444333321110 01111223356999999999999977777554
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.72 E-value=0.02 Score=56.85 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+++...+.|.||+|+|||||++.|+..+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 35667799999999999999999999873
No 301
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.65 E-value=0.038 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 302
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.61 E-value=0.13 Score=47.66 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.8
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3579999999999998543
No 303
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.56 E-value=0.022 Score=55.54 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNIS 272 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el----~~~~i~v~ 272 (487)
.+..-++|.||||+|||+|++.++..+ |.+++.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456679999999999999999998865 43555554
No 304
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.54 E-value=0.12 Score=57.86 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+..-++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456899999999999999999874
No 305
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.48 E-value=0.043 Score=53.97 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445688999999999999999999875
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.046 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....|++.|++|+|||+|+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.41 E-value=0.086 Score=53.10 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
....|.|.|+||+|||+++..++..+ |..+..++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34568999999999999999999876 55544443
No 308
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.38 E-value=0.086 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..|+|.|.||+||||+++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999999874
No 309
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.32 E-value=0.018 Score=56.55 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 276 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~---~~~i~v~~~~l 276 (487)
.-|.|.||+|+||||+++.+++.++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3488999999999999999999875 44555665544
No 310
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.24 E-value=0.12 Score=48.53 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.0
Q ss_pred CeeEEEEcCCCChHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAr 258 (487)
.+.+++.+|+|+|||...-
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 3579999999999998743
No 311
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.24 E-value=0.028 Score=60.65 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 275 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~ 275 (487)
.+..|+|.|+||+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345689999999999999999999986 7788877544
No 312
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.20 E-value=0.046 Score=55.38 Aligned_cols=71 Identities=23% Similarity=0.268 Sum_probs=44.2
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cchhh-------ccC-C-------cHHHHHHHHHHHHhcCC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK-------WRG-D-------SEKLIKVLFELARHHAP 300 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~--~~~i~v~~~-~l~~~-------~~g-~-------se~~l~~~f~~a~~~~p 300 (487)
+...++|.||+|+||||++++++.... ...+.+... ++... ++- + ....++..+..+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 456799999999999999999999763 234444321 11100 111 0 01123455556666788
Q ss_pred cEEEechhh
Q 011400 301 STIFLDEID 309 (487)
Q Consensus 301 ~IL~IDEiD 309 (487)
..++++|+.
T Consensus 254 d~~l~~e~r 262 (361)
T 2gza_A 254 TRILLAELR 262 (361)
T ss_dssp SEEEESCCC
T ss_pred CEEEEcCch
Confidence 999999974
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.19 E-value=0.027 Score=51.79 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 314
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.14 E-value=0.038 Score=52.21 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.-|.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.14 E-value=0.016 Score=54.47 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=17.0
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHH-HHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVA-TEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA-~el 264 (487)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 344568899999999999999999 765
No 316
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.10 E-value=0.1 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.+++.+|+|+|||..+-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999995444433
No 317
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.09 E-value=0.031 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..++|||.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4579999999999999999999884
No 318
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.00 E-value=0.15 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+..-+.|.||||+|||||.+.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568899999999999999999765
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.00 E-value=0.038 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.++.-+.|.||+|+|||||++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455568899999999999999999976
No 320
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.99 E-value=0.19 Score=47.16 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.0
Q ss_pred eeEEEEcCCCChHHHHH
Q 011400 241 KGILLFGPPGTGKTMLA 257 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA 257 (487)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 321
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.92 E-value=0.44 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
.+.+++.+|+|+|||..+-..+-
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999987654444
No 322
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.88 E-value=0.063 Score=48.55 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-+.|.|++|+||||++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 358899999999999999999876 45555444
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.87 E-value=0.046 Score=58.65 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 276 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~----~~~i~v~~~~l 276 (487)
.++..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3456789999999999999999999884 34545655444
No 324
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.83 E-value=0.018 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-|.|.|++|+||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445689999999999999999999983
No 325
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.78 E-value=0.04 Score=54.43 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345588999999999999999999765
No 326
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.71 E-value=0.12 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.....++|.||+|+|||+|++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345679999999999999999998865
No 327
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.59 E-value=0.033 Score=52.94 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.++.-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45666789999999999999999988653
No 328
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.57 E-value=0.079 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 271 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v 271 (487)
+.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457889999999999999999987 4555444
No 329
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.52 E-value=0.13 Score=48.18 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|++|+|||+|+.++...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 356999999999999999999874
No 330
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.51 E-value=0.035 Score=52.85 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3566678999999999999999998865
No 331
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.49 E-value=0.063 Score=58.41 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999887776654
No 332
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.48 E-value=0.25 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..-++|.||.|+||||+.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346889999999999999999874
No 333
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.43 E-value=0.093 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999764
No 334
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.40 E-value=0.15 Score=60.22 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+++...+.|.||+|+|||||++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4667789999999999999999999876
No 335
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.35 E-value=0.41 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||..+-..+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 579999999999998876665543
No 336
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.33 E-value=0.048 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999998775
No 337
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.33 E-value=0.27 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|+|.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 459999999999999999998754
No 338
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.30 E-value=0.032 Score=52.64 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++.-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455668899999999999999999865
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.27 E-value=0.059 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.27 E-value=0.06 Score=53.79 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.-+.|.||+|+||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344678999999999999999999875
No 341
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.26 E-value=0.048 Score=56.86 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3355789999999999999888753
No 342
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.24 E-value=0.59 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.489 Sum_probs=21.0
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 356999999999999999999763
No 343
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.23 E-value=0.042 Score=52.43 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999998854
No 344
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.21 E-value=0.26 Score=49.30 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998765
No 345
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.14 E-value=0.24 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA 261 (487)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998655433
No 346
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.08 E-value=0.043 Score=53.01 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.|+.-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35556788999999999999999998653
No 347
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.06 E-value=0.049 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+ .-+.|.||.|+|||||.+.++.-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 355 678899999999999999999865
No 348
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.03 E-value=0.11 Score=48.87 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=25.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
+.-|.|.|++|+||||+++.+++.++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 456889999999999999999999986443
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.02 E-value=0.062 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.+++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 350
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.00 E-value=0.066 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|+|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999854
No 351
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.93 E-value=0.055 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999985
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.91 E-value=0.053 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.90 E-value=0.056 Score=52.36 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+.+..-+.|.||.|+|||||++.|+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355667899999999999999999985
No 354
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.89 E-value=0.048 Score=52.62 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3566679999999999999999998865
No 355
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.89 E-value=0.084 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.366 Sum_probs=22.9
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
...++|.|++|+|||+|+..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35689999999999999999998864
No 356
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.88 E-value=0.066 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.-|.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999977
No 357
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.84 E-value=0.056 Score=57.42 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
...|+|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999974
No 358
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.78 E-value=0.051 Score=52.81 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3556678999999999999999999865
No 359
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.77 E-value=0.052 Score=52.03 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+..-+.|.||.|+|||||++.|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45566889999999999999999985
No 360
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.76 E-value=0.3 Score=53.73 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.9
Q ss_pred CCeeEEEEcCCCChHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LA 257 (487)
...++++.||+|+|||+.+
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 3578999999999999987
No 361
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.76 E-value=0.19 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVA 261 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA 261 (487)
.+.+++.+|+|+|||..+-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 3679999999999997655433
No 362
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.72 E-value=0.043 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-+.|.||.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 363
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.71 E-value=0.053 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
+.+..-+.|.||.|+|||||++.|+.-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 35556788999999999999999998653
No 364
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.71 E-value=0.045 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455678999999999999999999865
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.70 E-value=0.045 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999998865
No 366
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.67 E-value=0.22 Score=53.25 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 276 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~~~l 276 (487)
+..|+|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4568999999999999999999977 456777765444
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.65 E-value=0.049 Score=49.25 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 011400 242 GILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+.|.|++|+|||||++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 578999999999999999999763
No 368
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.64 E-value=0.06 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|||||||.+.|+.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455668899999999999999999855
No 369
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.63 E-value=0.071 Score=49.94 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 011400 242 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 272 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el~~~~i~v~ 272 (487)
.|-|+|..||||||+++.++. +|.+++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 588999999999999999988 888877644
No 370
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.63 E-value=0.047 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.|+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999998865
No 371
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.61 E-value=0.44 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~ 262 (487)
...++|.||.|+||||+.|.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46689999999999999999943
No 372
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.61 E-value=0.044 Score=51.42 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568899999999999999998865
No 373
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.58 E-value=0.048 Score=51.90 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++.-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999865
No 374
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.57 E-value=0.064 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 375
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.57 E-value=0.069 Score=53.89 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
...+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5679999999999999999999987543
No 376
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.57 E-value=0.074 Score=45.99 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.56 E-value=0.072 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 378
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.56 E-value=0.22 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
+.+++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5699999999999986544433
No 379
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.53 E-value=0.058 Score=52.22 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+.-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3556678899999999999999998854
No 380
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.51 E-value=0.058 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||.+.|+...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555678999999999999999999865
No 381
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.48 E-value=0.1 Score=58.42 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999888776654
No 382
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.46 E-value=0.16 Score=46.72 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999876
No 383
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.45 E-value=0.076 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 384
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.43 E-value=0.076 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
.|++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 385
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.42 E-value=0.088 Score=54.58 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=27.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 011400 241 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 274 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el~~~~i~v~~~ 274 (487)
..+++.+|+|+|||..+-.++...+.+.+.+...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3599999999999999988888887766666543
No 386
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.42 E-value=0.052 Score=52.15 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||.|+|||||.+.++....
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4556689999999999999999998653
No 387
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.40 E-value=0.37 Score=48.43 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.0
Q ss_pred CeeEEEEcCCCChHHHH
Q 011400 240 WKGILLFGPPGTGKTML 256 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~L 256 (487)
.+.+++.+|+|+|||..
T Consensus 52 ~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAA 68 (417)
T ss_dssp TCCEEEECCTTSCHHHH
T ss_pred CCCEEEEcCCCCHHHHH
Confidence 46799999999999974
No 388
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.38 E-value=0.051 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.|+.-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455668999999999999999999865
No 389
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.37 E-value=0.068 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=19.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.-|.|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999987
No 390
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.37 E-value=0.099 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999763
No 391
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.36 E-value=0.052 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||++.++.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 455678999999999999999999865
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.34 E-value=0.072 Score=54.04 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 455668899999999999999999854
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.33 E-value=0.071 Score=54.12 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 455668899999999999999999855
No 394
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.25 E-value=0.063 Score=54.21 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 455668899999999999999999855
No 395
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.23 E-value=0.075 Score=57.65 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999988887654
No 396
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.23 E-value=0.086 Score=45.56 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|+.++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998743
No 397
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.23 E-value=0.1 Score=49.24 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHhCC
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATECKT 266 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el~~ 266 (487)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455788899999999999999997644
No 398
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.23 E-value=0.075 Score=54.18 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||.+.||.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3455668899999999999999999854
No 399
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.17 E-value=0.077 Score=46.51 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..+.|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 400
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.16 E-value=0.063 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|+|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 401
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.16 E-value=0.077 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|||||||.+.|+.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455568899999999999999999855
No 402
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.15 E-value=0.058 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||.|+|||||.+.++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999865
No 403
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.14 E-value=0.099 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999999976
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.12 E-value=0.068 Score=54.15 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.1
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.|+.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445568899999999999999999855
No 405
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.10 E-value=0.059 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhC
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECK 265 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~ 265 (487)
.+..-+.|.||.|+|||||++.|+....
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4556688999999999999999998653
No 406
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.10 E-value=0.091 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 407
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.04 E-value=0.089 Score=46.13 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999874
No 408
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.04 E-value=0.092 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 409
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.01 E-value=0.082 Score=46.12 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
No 410
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.97 E-value=0.37 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
+++++.+|+|+|||..+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 57999999999999987766653
No 411
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.96 E-value=0.092 Score=45.45 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 412
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.95 E-value=0.089 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 413
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.91 E-value=0.19 Score=48.13 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|+|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999764
No 414
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.84 E-value=0.075 Score=54.14 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
.+..-+.|.||+|+|||||.+.||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 455568899999999999999999855
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.78 E-value=0.098 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999873
No 416
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.77 E-value=0.1 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|+||+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999874
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.76 E-value=0.065 Score=54.20 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||.+.||.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455668899999999999999999854
No 418
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.72 E-value=0.1 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 419
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.67 E-value=0.084 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 420
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.66 E-value=0.11 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.65 E-value=0.097 Score=45.45 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 422
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.64 E-value=0.11 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 423
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.57 E-value=0.094 Score=53.77 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|||||||.+.|+.-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3556679999999999999999999743
No 424
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.56 E-value=0.09 Score=45.50 Aligned_cols=21 Identities=43% Similarity=0.817 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~ 262 (487)
.|++.|++|+|||+|++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 425
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.56 E-value=0.37 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.2
Q ss_pred eeEEEEcCCCChHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAK 258 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAr 258 (487)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998543
No 426
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.56 E-value=0.73 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=19.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+++.+|+|+|||..+-..+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 469999999999998876665443
No 427
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.55 E-value=0.18 Score=49.87 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el 264 (487)
-++|.|+.|+||||+++.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999754
No 428
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.15 Score=57.21 Aligned_cols=22 Identities=41% Similarity=0.675 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.+++.||||||||+++..+...
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999987666543
No 429
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.50 E-value=0.1 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 430
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.49 E-value=0.1 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.48 E-value=0.13 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.-.|++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999885
No 432
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.47 E-value=0.086 Score=51.80 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||.|+|||||++.|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566678999999999999999999865
No 433
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=91.47 E-value=0.32 Score=48.78 Aligned_cols=20 Identities=25% Similarity=0.214 Sum_probs=16.3
Q ss_pred CeeEEEEcCCCChHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKA 259 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAra 259 (487)
.+.+++.+|+|+|||..+-.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHH
Confidence 35699999999999987433
No 434
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.42 E-value=0.11 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999874
No 435
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.40 E-value=0.11 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|++.+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 436
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.37 E-value=0.11 Score=45.88 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 437
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.35 E-value=0.34 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 438
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.35 E-value=0.12 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 439
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.34 E-value=0.18 Score=51.25 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 273 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~~ 273 (487)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34679999999999999999998765 556665553
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.34 E-value=0.13 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999987
No 441
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.32 E-value=0.25 Score=46.68 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=27.1
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh--CCcEEEEe
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 272 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el--~~~~i~v~ 272 (487)
....+++.|.+|+||||++..+|..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999999776 55565555
No 442
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.29 E-value=0.08 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4666779999999999999999998855
No 443
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.28 E-value=0.11 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 444
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.25 E-value=0.12 Score=46.11 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 445
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.19 E-value=0.26 Score=47.23 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.0
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999976
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.19 E-value=0.11 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 447
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.17 E-value=0.077 Score=48.24 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
.+...+.|.|++|+|||+|++.++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44556999999999999999998753
No 448
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.16 E-value=0.12 Score=46.23 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 449
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.15 E-value=0.095 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.4
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
..-+.|.||.|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5568899999999999999999865
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.14 E-value=0.12 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999763
No 451
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.11 E-value=0.12 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45999999999999999999874
No 452
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.11 E-value=0.37 Score=49.98 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCcccCcHHHHHHHHHHHhccccCchh-----hcCCC-CCCeeEEEEcCCCChHHHHH
Q 011400 204 VKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGLL-SPWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 204 ~~~~di~G~e~~k~~L~e~l~~~l~~~~~-----~~~~~-~~~~gvLL~GppGtGKT~LA 257 (487)
.+|+++.-.+.+.+.|.+.- ...+.. +..+. ..++.+|+.||+|+|||..+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 35777766666666665411 111111 11111 23578999999999999874
No 453
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.09 E-value=0.12 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 454
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.08 E-value=0.48 Score=46.29 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHhccccCchh-----hcCCC-CCCeeEEEEcCCCChHHHHH
Q 011400 203 DVKWESIKGLENAKRLLKEAVVMPIKYPKY-----FTGLL-SPWKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 203 ~~~~~di~G~e~~k~~L~e~l~~~l~~~~~-----~~~~~-~~~~gvLL~GppGtGKT~LA 257 (487)
..+|+++.-.+.+.+.|...- ...+.. +..+. .+++.+++.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 346777766666666665421 111111 11112 23578999999999999763
No 455
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.04 E-value=0.14 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|+|.|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999874
No 456
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=91.00 E-value=0.12 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 459999999999999999888754
No 457
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.98 E-value=0.11 Score=45.37 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|++.|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 458
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.88 E-value=0.13 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+..-+.|.||.|+|||||+|.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44569999999999999999999854
No 459
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.85 E-value=0.15 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 460
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.82 E-value=0.14 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 461
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.80 E-value=0.094 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCeeEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 011400 238 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 269 (487)
Q Consensus 238 ~~~~gvLL~GppGtGKT~LAraiA~el~~~~i 269 (487)
.++.-+.|.||.|+||||+++.++.. +..+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 34455889999999999999999987 44333
No 462
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.80 E-value=0.4 Score=47.96 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.9
Q ss_pred CeeEEEEcCCCChHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLA 257 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LA 257 (487)
++.+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 468999999999999875
No 463
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.79 E-value=0.14 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 464
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.77 E-value=0.21 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.1
Q ss_pred eeEEEEcCCCChHHHHH-HHHH
Q 011400 241 KGILLFGPPGTGKTMLA-KAVA 261 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LA-raiA 261 (487)
+.+|+.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999975 4444
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.76 E-value=0.16 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
.-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998765
No 466
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.75 E-value=0.19 Score=49.96 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCcE
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTTF 268 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~~ 268 (487)
...+++|.|++|+|||++|.++... |..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~l 171 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRL 171 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCce
Confidence 4578999999999999999999875 4443
No 467
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.72 E-value=0.46 Score=45.08 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
.-.+++||.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 446789999999997666655543 55555554
No 468
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.72 E-value=0.17 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999874
No 469
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.71 E-value=0.21 Score=51.94 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
+..-+.|.||+|+|||||++.|+......
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 44568999999999999999999987544
No 470
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.65 E-value=0.14 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|+|.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 471
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.64 E-value=0.13 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 011400 242 GILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~e 263 (487)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 472
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.58 E-value=0.18 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 473
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.55 E-value=0.14 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 474
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.55 E-value=0.12 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998864
No 475
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.54 E-value=0.15 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
..|++.|++|+|||+|++++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 476
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.52 E-value=0.17 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~e 263 (487)
+...|++.|++|+|||+|+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999763
No 477
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.18 Score=44.98 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
No 478
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.50 E-value=0.16 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 479
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.48 E-value=0.33 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=24.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 273 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el----~~~~i~v~~ 273 (487)
++++.+|+|+|||..+-.++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888886654 555555543
No 480
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.46 E-value=0.16 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el 264 (487)
...|++.|++|+|||+|+..+...-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998753
No 481
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.44 E-value=1.1 Score=47.31 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCeeEEEEcCCCChHHHH
Q 011400 239 PWKGILLFGPPGTGKTML 256 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~L 256 (487)
..+.+++.+|+|+|||..
T Consensus 110 ~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCccHH
Confidence 457899999999999984
No 482
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.44 E-value=0.15 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999888774
No 483
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.44 E-value=0.15 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999999874
No 484
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.43 E-value=0.12 Score=45.40 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 485
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.40 E-value=0.15 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCCCeeEEEEcCCCChHHHHHHHHHHHh
Q 011400 237 LSPWKGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 237 ~~~~~gvLL~GppGtGKT~LAraiA~el 264 (487)
+.+..-+.|.||+|+|||||++.|+.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3555668899999999999999999854
No 486
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.37 E-value=0.2 Score=50.41 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHHHhCCc
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVATECKTT 267 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~el~~~ 267 (487)
...-+.|.||+|+|||||.+.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34568999999999999999999988644
No 487
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.34 E-value=0.16 Score=45.18 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 488
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.32 E-value=0.15 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~ 262 (487)
..|+|.|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999985
No 489
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.31 E-value=1.2 Score=49.56 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=23.5
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
+.++|+.||+|+|||..+-..+-.. +...+.+.
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvla 424 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMV 424 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4679999999999999776554433 55555554
No 490
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.26 E-value=0.19 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.2
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 491
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.25 E-value=0.15 Score=45.68 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 492
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.21 E-value=0.16 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 493
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.16 E-value=0.3 Score=44.83 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 011400 243 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 272 (487)
Q Consensus 243 vLL~GppGtGKT~LAraiA~el---~~~~i~v~ 272 (487)
|.|-|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999977 66666554
No 494
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.15 E-value=0.27 Score=45.53 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh--CCcEEEE
Q 011400 242 GILLFGPPGTGKTMLAKAVATEC--KTTFFNI 271 (487)
Q Consensus 242 gvLL~GppGtGKT~LAraiA~el--~~~~i~v 271 (487)
=|.|-|+.|+||||.++.+++.+ +.+++..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 37788999999999999999988 4455544
No 495
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.13 E-value=0.17 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHh
Q 011400 241 KGILLFGPPGTGKTMLAKAVATEC 264 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~el 264 (487)
-.|++.|++|+|||+|++.+...-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 496
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.11 E-value=0.17 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.10 E-value=0.18 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|++.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.09 E-value=0.22 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCeeEEEEcCCCChHHHHHHHHHH
Q 011400 239 PWKGILLFGPPGTGKTMLAKAVAT 262 (487)
Q Consensus 239 ~~~gvLL~GppGtGKT~LAraiA~ 262 (487)
....|++.|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999864
No 499
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.07 E-value=0.16 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHH
Q 011400 241 KGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 241 ~gvLL~GppGtGKT~LAraiA~e 263 (487)
..|+|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.01 E-value=0.2 Score=45.32 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.3
Q ss_pred CeeEEEEcCCCChHHHHHHHHHHH
Q 011400 240 WKGILLFGPPGTGKTMLAKAVATE 263 (487)
Q Consensus 240 ~~gvLL~GppGtGKT~LAraiA~e 263 (487)
...|++.|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
Done!