BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011401
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 82/423 (19%)
Query: 90 SLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149
+L +D G +W+ C +N +SST V C++ CS + S
Sbjct: 36 NLVVDLGGRFLWVDCD-------QNY---------VSSTYRPVRCRTSQCSLSGS----- 74
Query: 150 DLCAIAKC---PLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLH 206
A C P + C F P G + + + SS + + +
Sbjct: 75 --IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP 132
Query: 207 NFTFGCAHTTLGEP-----IGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNR 261
F F CA T+L + +G+AG GR ++ P+Q AS + +F+ CL S S SN
Sbjct: 133 RFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFAS-AFSFKRKFAMCL-SGSTSSN- 189
Query: 262 TRLPSPLILGR--YEDKEKRVNSEEAEFVYTDMLDNP----------KHPYFYSVGLEGI 309
S +I G Y + S++ YT +L NP + Y +G++ I
Sbjct: 190 ----SVIIFGNDPYTFLPNIIVSDKT-LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 310 SVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ 369
+ + + L + G GG + + +T+L S+Y+ V F + A
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIK-----ESAARN 299
Query: 370 IEEKTGLSP---CYYFDQVVKG----NVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGK 422
I ++P C+ D ++ +VP+++L L ++ + +
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDL---------VLQSESVVWTITGSNSMV 350
Query: 423 AKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGF------ARRQC 476
NV CL +++GG S +G +Q + V +DL +VGF +R C
Sbjct: 351 YINDNVVCLGVVDGGSNLRTS----IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTC 406
Query: 477 ASL 479
A+
Sbjct: 407 ANF 409
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 164/423 (38%), Gaps = 82/423 (19%)
Query: 90 SLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149
+L +D G +W+ C +N +SST V C++ CS + S
Sbjct: 36 NLVVDLGGRFLWVDCD-------QNY---------VSSTYRPVRCRTSQCSLSGS----- 74
Query: 150 DLCAIAKC---PLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLH 206
A C P + C F P G + + + SS + + +
Sbjct: 75 --IACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVP 132
Query: 207 NFTFGCAHTTLGEP-----IGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNR 261
F F CA T+L + +G+AG GR ++ P+Q AS + +F+ CL S S SN
Sbjct: 133 RFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFAS-AFSFKRKFAMCL-SGSTSSN- 189
Query: 262 TRLPSPLILGR--YEDKEKRVNSEEAEFVYTDMLDNP----------KHPYFYSVGLEGI 309
S +I G Y + S++ YT +L NP + Y +G++ I
Sbjct: 190 ----SVIIFGNDPYTFLPNIIVSDKT-LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSI 244
Query: 310 SVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ 369
+ + + L + G GG + + +T+L S+Y+ V F + A
Sbjct: 245 KINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIK-----ESAARN 299
Query: 370 IEEKTGLSP---CYYFDQVVKG----NVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGK 422
I ++P C+ D ++ +VP+++L L ++ + +
Sbjct: 300 ITRVASVAPFGACFSTDNILSTRLGPSVPSIDL---------VLQSESVVWTITGSNSMV 350
Query: 423 AKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGF------ARRQC 476
NV CL +++GG S +G +Q + V +DL +VGF +R C
Sbjct: 351 YINDNVVCLGVVDGGSNLRTS----IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTC 406
Query: 477 ASL 479
A+
Sbjct: 407 ANF 409
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 106/421 (25%), Positives = 151/421 (35%), Gaps = 83/421 (19%)
Query: 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKV 132
S YT+ F G SL LD LVW C + + PA ++
Sbjct: 14 SLYTIPFHDG------ASLVLDVAGPLVWSTC---------DGGQPPA----------EI 48
Query: 133 SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLV-ARLYKD 191
C SP C A++ + C C D C ++ P A GSL R +
Sbjct: 49 PCSSPTCLLANAY--PAPGCPAPSCGSDK-HDKPCTAYPYNPVSGACAAGSLSHTRFVAN 105
Query: 192 SL--SMPVSSQKSLVLHNFTFGCAHTTLGEPI-----GVAGFGRGLLSFPAQLASLSPHL 244
+ S PVS VL CA + L + GVAG L+ PAQ+AS +
Sbjct: 106 TTDGSKPVSKVNVGVLA----ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQ-KV 160
Query: 245 GNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSV 304
NRF CL T P I G + YT ++ P Y +
Sbjct: 161 ANRFLLCL--------PTGGPGVAIFGGGPVPWPQFTQS---MPYTPLVTKGGSPAHY-I 208
Query: 305 GLEGISVGKRNIPAP-GFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV 363
I VG +P P G L GG+++ + + +L +Y ++ F + L
Sbjct: 209 SARSIVVGDTRVPVPEGALAT------GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQ 262
Query: 364 HER----ASQIEEKTGLSPCYYFDQVVKGN------VPTVELHFVGSNSSVALPRKNYFY 413
H A +E CY D GN VP V+L G S + KN
Sbjct: 263 HANGAPVARAVEAVAPFGVCY--DTKTLGNNLGGYAVPNVQLGLDG-GSDWTMTGKNSMV 319
Query: 414 DFLDAGDGKAKKRNVGCLMLMNGGDEEELSG-GPGATLGNYQQQGFEVVYDLEKGKVGFA 472
D K+ C+ + G P LG Q + F + +D+EK ++GF+
Sbjct: 320 DV---------KQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
Query: 473 R 473
R
Sbjct: 371 R 371
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 150/377 (39%), Gaps = 62/377 (16%)
Query: 135 KSPACSAAHSSLPTSDLCAIAKCPLDS---IETSDCKSFSCPPFYYAYGDGSLVARLYKD 191
++P C + S + C CP S + C S P G G L +
Sbjct: 61 QAPFCHSTQCSRANTHQCL--SCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAI 118
Query: 192 SLSMPVSSQKS--LVLHNFTFGCAHTTL---GEP---IGVAGFGRGLLSFPAQLASLSPH 243
+ + Q + + F F CA + L G P GVAG G +S P QLAS H
Sbjct: 119 HATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLAS---H 175
Query: 244 LG--NRFSYCLVSHSFDSNRTRLPS---PLILGRYEDKEKRVNSEEAEFVYTDMLDNPKH 298
G +F+ CL +R P+ +I G + ++ +++ ++ D+ P
Sbjct: 176 FGLQRQFTTCL---------SRYPTSKGAIIFGDAPNNMRQFQNQD---IFHDLAFTPLT 223
Query: 299 PYF---YSVGLEGISVGKRNI-PAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVA 354
Y+V + I + + ++ P + G GG ++ + T +L S+Y+
Sbjct: 224 ITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQ 283
Query: 355 EFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYD 414
F ++L + +Q++ C+ +++ P+V+L N V R +
Sbjct: 284 VFAQQL----PKQAQVKSVAPFGLCFNSNKI--NAYPSVDLVMDKPNGPVW--RISGEDL 335
Query: 415 FLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARR 474
+ A G V CL +MNGG + TLG Q + VV+DL + +VGF+
Sbjct: 336 MVQAQPG------VTCLGVMNGGMQPRAE----ITLGARQLEENLVVFDLARSRVGFSTS 385
Query: 475 -------QCASLWESLN 484
+CA L+ N
Sbjct: 386 SLHSHGVKCADLFNFAN 402
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 150/419 (35%), Gaps = 79/419 (18%)
Query: 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKV 132
S YT+ F G SL LD LVW C + PA ++
Sbjct: 14 SLYTIPFHDG------ASLVLDVAGPLVWSTC---------KGGQPPA----------EI 48
Query: 133 SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLV-ARLYKD 191
C SP C A++ + C C D + C ++ P A GSL R +
Sbjct: 49 PCSSPTCLLANAY--PAPGCPAPSCGSDKHD-KPCTAYPYNPVSGACAAGSLSHTRFVAN 105
Query: 192 SL--SMPVSSQKSLVLHNFTFGCAHTTLGEPI-----GVAGFGRGLLSFPAQLASLSPHL 244
+ S PVS VL CA + L + GVAG L+ PAQ+AS +
Sbjct: 106 TTDGSKPVSKVNVGVLA----ACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQ-KV 160
Query: 245 GNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSV 304
NRF CL T P I G + YT ++ P Y +
Sbjct: 161 ANRFLLCL--------PTGGPGVAIFGGGPVPWPQFTQS---MPYTPLVTKGGSPAHY-I 208
Query: 305 GLEGISVGKRNIPAP-GFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV 363
I VG +P P G L GG+++ + + +L +Y ++ F + L
Sbjct: 209 SARSIVVGDTRVPVPEGALAT------GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQ 262
Query: 364 HERASQIEEKTGLSPCY--YFDQVVKGN------VPTVELHFVGSNSSVALPRKNYFYDF 415
H + + + +D GN VP V+L G S + KN D
Sbjct: 263 HANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDG-GSDWTMTGKNSMVDV 321
Query: 416 LDAGDGKAKKRNVGCLMLMNGGDEEELSG-GPGATLGNYQQQGFEVVYDLEKGKVGFAR 473
K+ C+ + G P LG Q + F + +D+EK ++GF+R
Sbjct: 322 ---------KQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 151/421 (35%), Gaps = 83/421 (19%)
Query: 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKV 132
S YT+ F G SL LD LVW CE Q + ++
Sbjct: 16 SLYTIPFHDG------ASLVLDVAGLLVW--------STCEGGQ-----------SPAEI 50
Query: 133 SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDS 192
+C SP C A++ + C C D + C ++ P A GSL + +
Sbjct: 51 ACSSPTCLLANAY--PAPGCPAPSCGSDRHD-KPCTAYPSNPVTGACAAGSLFHTRFAAN 107
Query: 193 LS---MPVSSQKSLVLHNFTFGCAHTTLGEPI-----GVAGFGRGLLSFPAQLASLSPHL 244
+ PVS VL CA + L + GVAG L+ P+Q+AS +
Sbjct: 108 TTDGNKPVSEVNVRVLA----ACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQ-KV 162
Query: 245 GNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSV 304
N+F CL T P I G + YT ++ P Y
Sbjct: 163 PNKFLLCL--------PTGGPGVAIFGGGPLPWPQFTQ---SMDYTPLVAKGGSPAHY-- 209
Query: 305 GLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVH 364
+ S+ N P R + GG+++ + + +L +Y +V F + L
Sbjct: 210 -ISARSIKVENTRVPISERAL---ATGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQP 265
Query: 365 ERASQIEEKTG-LSP---CYYFDQVVKGN------VPTVELHFVGSNSSVALPRKNYFYD 414
+ + ++P CY D GN VP V L G S A+ KN D
Sbjct: 266 ANGAPVARAVKPVAPFELCY--DTKTLGNNPGGYWVPNVLLELDG-GSDWAMTGKNSMVD 322
Query: 415 FLDAGDGKAKKRNVGCLML--MNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFA 472
K C+ M G D + S P LG Q + F + +D+EK ++GF
Sbjct: 323 V---------KPGTACVAFVEMKGVDAGDGS-APAVILGGAQMEDFVLDFDMEKKRLGFL 372
Query: 473 R 473
R
Sbjct: 373 R 373
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 27/189 (14%)
Query: 297 KHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGG--MVVDSGTTFTMLPASLYEKVVA 354
K ++Y + + + +G +++ +D + Y +VDSGTT LP +++ VV
Sbjct: 192 KEEWYYQIEILKLEIGGQSL-------NLDCREYNADKAIVDSGTTLLRLPQKVFDAVV- 243
Query: 355 EFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSS----VALPRKN 410
E R + E + + L+ C+ + P + ++ NSS + + +
Sbjct: 244 EAVARASLIPEFSDGFWTGSQLA-CWTNSETPWSYFPKISIYLRDENSSRSFRITILPQL 302
Query: 411 YFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVG 470
Y + AG N C L +G +GF V++D + +VG
Sbjct: 303 YIQPMMGAG------LNYECYRFGISPSTNAL------VIGATVMEGFYVIFDRAQKRVG 350
Query: 471 FARRQCASL 479
FA CA +
Sbjct: 351 FAASPCAEI 359
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 111/317 (35%), Gaps = 63/317 (19%)
Query: 83 GSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAA 142
GS ++ +DTGS +W+P C +KP P + CK
Sbjct: 21 GSNKQKFNVIVDTGSSDLWVPDASVTC-------DKPRPGQSADF------CKGKGIYTP 67
Query: 143 HSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLV-ARLYKDSLSMPVSSQK 201
SS + +L PFY YGDGS LYKD++ +S
Sbjct: 68 KSSTTSQNLGT--------------------PFYIGYGDGSSSQGTLYKDTVGFGGASIT 107
Query: 202 SLVLHNFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNR 261
V + T T++ P G+ G G ++ L N+ ++S N
Sbjct: 108 KQVFADIT----KTSI--PQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNS 161
Query: 262 TRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGF 321
+ I+ DK K S A V +D + L + +NI
Sbjct: 162 PNAATGQIIFGGVDKAKYSGSLIAVPVTSDRE--------LRITLNSLKAVGKNI----- 208
Query: 322 LRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRL---GRVHERASQIEEKTGLSP 378
G +++DSGTT T L + + ++ F L G+ H + +G +
Sbjct: 209 ------NGNIDVLLDSGTTITYLQQDVAQDIIDAFQAELKSDGQGHTFYVTDCQTSG-TV 261
Query: 379 CYYFDQVVKGNVPTVEL 395
+ FD K +VP E
Sbjct: 262 DFNFDNNAKISVPASEF 278
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 332 GMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVP 391
G +D+GT+ LP+ L E + AE I K G + Y D + N+P
Sbjct: 214 GAAIDTGTSLITLPSGLAEMINAE--------------IGAKKGWTGQYTLDCNTRDNLP 259
Query: 392 TVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLG 451
+ +F G N ++ YD+ G C+ + D E GP A +G
Sbjct: 260 DLIFNFNGYNFTIGP------YDYTLEVSGS-------CISAITPMDFPEPV-GPLAIVG 305
Query: 452 NYQQQGFEVVYDLEKGKVGFAR 473
+ + + +YDL VG A+
Sbjct: 306 DAFLRKYYSIYDLGNNAVGLAK 327
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 332 GMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVP 391
G +D+GT+ LP+ L E + AE I K G + Y D + N+P
Sbjct: 214 GAAIDTGTSLITLPSGLAEMINAE--------------IGAKKGWTGQYTLDCNTRDNLP 259
Query: 392 TVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLG 451
+ +F G N ++ YD+ G C+ + D E GP A +G
Sbjct: 260 DLIFNFNGYNFTIGP------YDYTLEVSGS-------CISAITPMDFPEPV-GPLAIVG 305
Query: 452 NYQQQGFEVVYDLEKGKVGFAR 473
+ + + +YD+ VG A+
Sbjct: 306 DAFLRKYYSIYDIGNNAVGLAK 327
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 28/142 (19%)
Query: 332 GMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVP 391
G +D+GT+ LP+ L E + AE I K G + Y D + N+P
Sbjct: 214 GAAIDTGTSLITLPSGLAEMINAE--------------IGAKKGSTGQYTLDCNTRDNLP 259
Query: 392 TVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLG 451
+ +F G N ++ YD+ G C+ + D E GP A +G
Sbjct: 260 DLIFNFNGYNFTIGP------YDYTLEVSGS-------CISAITPMDFPEPV-GPLAIVG 305
Query: 452 NYQQQGFEVVYDLEKGKVGFAR 473
+ + + +YDL VG A+
Sbjct: 306 DAFLRKYYSIYDLGNNAVGLAK 327
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 86/407 (21%), Positives = 143/407 (35%), Gaps = 104/407 (25%)
Query: 83 GSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCK-----SP 137
GS + +++ +DTGS +W+P +C + + Q T CK P
Sbjct: 21 GSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQ-------------TADFCKQKGTYDP 67
Query: 138 ACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLV-ARLYKDSLSMP 196
+ S+A L T PF YGDGS LYKD++
Sbjct: 68 SGSSASQDLNT-------------------------PFKIGYGDGSSSQGTLYKDTVGFG 102
Query: 197 VSSQKSLVLHNFTFGCAHTTLGEPIGVAGF-----GRGLLSFPAQLASLSPHLGNRFSYC 251
S K+ VL + T++ + I G+ G + P L N +S
Sbjct: 103 GVSIKNQVLAD----VDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLY 158
Query: 252 LVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISV 311
L N + I+ D K S A V +D SV + G ++
Sbjct: 159 L-------NSPDAATGQIIFGGVDNAKYSGSLIALPVTSDR---ELRISLGSVEVSGKTI 208
Query: 312 GKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIE 371
N+ +++DSGTT T L L ++++ F+ +L + S E
Sbjct: 209 NTDNVD---------------VLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYE 253
Query: 372 EKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL 431
LS F+ N+ +++P F L DG+ + C
Sbjct: 254 VDCNLSGDVVFN--------------FSKNAKISVPASE-FAASLQGDDGQPYDK---CQ 295
Query: 432 MLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478
+L + D L N+ + + +VYDL+ ++ A+ + S
Sbjct: 296 LLFDVNDANILG-------DNFLRSAY-IVYDLDDNEISLAQVKYTS 334
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 333 MVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPC-------YYFDQV 385
+V+DSGTT T S +K F R +G + ++I L C + FDQ
Sbjct: 215 VVLDSGTTITYFSQSTADK----FARIVGATWDSRNEIYR---LPSCDLSGDAVFNFDQG 267
Query: 386 VKGNVPTVELHFVGSNSSV 404
VK VP EL S+SS+
Sbjct: 268 VKITVPLSELILKDSDSSI 286
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 289 YTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASL 348
YTD+L + +F+ + G+ + + V G +D+GT F + P+S
Sbjct: 198 YTDVLKSRGGYFFWDAPVTGVKIDGSD--------AVSFDGAQAFTIDTGTNFFIAPSSF 249
Query: 349 YEKVV 353
EKVV
Sbjct: 250 AEKVV 254
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 23/108 (21%)
Query: 207 NFTFGCAHTTLGEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPS 266
F FG GE + F GL P L SP L V +F R+P
Sbjct: 208 TFHFGHYSVESGEEMAQVVFNNGL---PDALIVASPRL-----MAGVMRAFTRLNVRVPH 259
Query: 267 PLILGRYEDKE---------------KRVNSEEAEFVYTDMLDNPKHP 299
+++G Y+D E +EA + D+++NP+ P
Sbjct: 260 DVVIGGYDDPEWYSFVGAGITTFVPPHEEMGKEAVRLLVDLIENPELP 307
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 223 VAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRT 262
+ G GRG S A LA +S G R+ + LVS+S D N T
Sbjct: 171 INGQGRGPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYT 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,260,528
Number of Sequences: 62578
Number of extensions: 615181
Number of successful extensions: 1319
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 31
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)