Query 011401
Match_columns 486
No_of_seqs 262 out of 1556
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 00:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.8E-69 6.2E-74 557.0 42.9 392 24-479 24-431 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 7E-56 1.5E-60 454.9 33.1 342 71-477 43-397 (398)
3 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-55 2.5E-60 446.3 33.2 342 81-474 2-361 (362)
4 PTZ00165 aspartyl protease; Pr 100.0 2.1E-55 4.4E-60 456.2 35.1 318 65-479 109-451 (482)
5 cd05472 cnd41_like Chloroplast 100.0 1.6E-54 3.5E-59 429.5 31.7 295 74-476 1-299 (299)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.1E-54 4.6E-59 433.4 29.9 301 73-477 2-326 (326)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-54 6.7E-59 432.4 30.5 306 71-473 3-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 4.7E-54 1E-58 429.4 29.0 301 75-473 1-316 (316)
9 cd05478 pepsin_A Pepsin A, asp 100.0 8.3E-54 1.8E-58 427.8 30.2 296 71-473 7-317 (317)
10 cd05477 gastricsin Gastricsins 100.0 3.5E-53 7.5E-58 423.6 31.7 303 72-474 1-318 (318)
11 cd05488 Proteinase_A_fungi Fun 100.0 6.7E-53 1.5E-57 421.6 30.0 300 71-473 7-320 (320)
12 cd06098 phytepsin Phytepsin, a 100.0 1.8E-52 3.9E-57 417.9 31.2 295 71-473 7-317 (317)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.5E-52 7.5E-57 417.8 29.8 305 71-473 8-329 (329)
14 cd05487 renin_like Renin stimu 100.0 5.8E-52 1.3E-56 415.9 30.0 305 71-474 5-326 (326)
15 cd05473 beta_secretase_like Be 100.0 1.4E-51 3E-56 419.3 29.9 327 73-479 2-350 (364)
16 PTZ00147 plasmepsin-1; Provisi 100.0 3.2E-51 7E-56 421.7 30.2 306 63-475 126-450 (453)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.5E-50 5.4E-55 414.3 30.8 305 64-475 126-449 (450)
18 cd05476 pepsin_A_like_plant Ch 100.0 3.2E-50 6.9E-55 391.8 28.2 260 74-476 1-265 (265)
19 cd05475 nucellin_like Nucellin 100.0 3.5E-50 7.6E-55 393.0 28.3 262 73-476 1-273 (273)
20 cd05474 SAP_like SAPs, pepsin- 100.0 4.9E-47 1.1E-51 375.4 27.2 279 74-474 2-295 (295)
21 cd06097 Aspergillopepsin_like 100.0 6.3E-47 1.4E-51 371.2 24.8 262 75-473 1-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 7.4E-46 1.6E-50 370.3 20.4 303 74-474 1-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.4E-44 1.6E-48 349.9 27.6 271 75-473 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.7E-31 7.9E-36 238.2 13.7 160 75-272 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 100.0 9.7E-28 2.1E-32 215.7 14.4 156 301-473 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 6E-22 1.3E-26 166.1 11.6 102 77-226 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.8 6.1E-05 1.3E-09 60.7 7.5 92 74-228 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.7 0.0087 1.9E-07 50.8 8.0 96 70-228 7-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.3 0.13 2.9E-06 40.4 8.4 45 177-227 44-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.3 0.6 1.3E-05 39.6 8.7 31 72-105 14-44 (124)
31 cd05479 RP_DDI RP_DDI; retrope 90.5 1.3 2.8E-05 37.6 7.5 25 447-471 100-124 (124)
32 cd05484 retropepsin_like_LTR_2 90.2 0.31 6.6E-06 38.9 3.2 28 75-105 1-28 (91)
33 PF08284 RVP_2: Retroviral asp 87.2 3 6.4E-05 36.0 7.6 28 447-474 105-132 (135)
34 PF13650 Asp_protease_2: Aspar 84.6 1.1 2.4E-05 35.0 3.4 21 332-352 11-31 (90)
35 TIGR02281 clan_AA_DTGA clan AA 82.7 2.3 4.9E-05 36.0 4.7 35 300-352 10-44 (121)
36 PF13975 gag-asp_proteas: gag- 82.1 2.1 4.5E-05 32.4 3.8 32 72-106 6-37 (72)
37 cd05484 retropepsin_like_LTR_2 81.2 1.9 4.1E-05 34.2 3.5 29 309-352 5-33 (91)
38 COG3577 Predicted aspartyl pro 81.0 6.7 0.00015 36.0 7.2 33 70-105 101-133 (215)
39 TIGR03698 clan_AA_DTGF clan AA 80.9 7.3 0.00016 32.1 7.0 23 447-469 85-107 (107)
40 PF13975 gag-asp_proteas: gag- 79.7 2.5 5.4E-05 32.0 3.6 21 332-352 21-41 (72)
41 PF00077 RVP: Retroviral aspar 77.7 2.8 6.2E-05 33.7 3.6 27 76-105 7-33 (100)
42 cd05483 retropepsin_like_bacte 75.8 3.8 8.2E-05 32.3 3.8 21 332-352 15-35 (96)
43 cd06095 RP_RTVL_H_like Retrope 71.6 4.5 9.7E-05 31.7 3.2 21 332-352 11-31 (86)
44 PF00077 RVP: Retroviral aspar 63.3 4.7 0.0001 32.3 1.8 17 332-348 18-34 (100)
45 cd06095 RP_RTVL_H_like Retrope 60.7 9.3 0.0002 29.9 3.0 25 78-105 2-26 (86)
46 cd05482 HIV_retropepsin_like R 59.8 10 0.00022 30.0 3.0 25 78-105 2-26 (87)
47 PF07172 GRP: Glycine rich pro 57.1 8.6 0.00019 31.0 2.2 8 1-8 1-8 (95)
48 cd05481 retropepsin_like_LTR_1 56.4 11 0.00025 30.0 2.9 22 332-353 12-33 (93)
49 COG3577 Predicted aspartyl pro 47.1 32 0.0007 31.7 4.5 35 300-352 104-138 (215)
50 PF12384 Peptidase_A2B: Ty3 tr 45.2 25 0.00055 31.2 3.4 29 76-105 34-62 (177)
51 PF02160 Peptidase_A3: Caulifl 42.0 39 0.00084 31.2 4.2 27 447-474 92-118 (201)
52 COG5550 Predicted aspartyl pro 40.9 19 0.00041 30.3 1.9 20 333-352 29-49 (125)
53 PF09668 Asp_protease: Asparty 40.1 24 0.00053 29.9 2.5 29 309-352 29-57 (124)
54 cd06098 phytepsin Phytepsin, a 36.4 42 0.00091 33.2 4.0 40 66-105 181-227 (317)
55 PF09668 Asp_protease: Asparty 36.2 23 0.00051 30.0 1.8 37 73-114 23-59 (124)
56 TIGR03698 clan_AA_DTGF clan AA 33.4 53 0.0012 26.9 3.5 26 77-103 2-32 (107)
57 cd05475 nucellin_like Nucellin 29.3 77 0.0017 30.5 4.5 41 66-106 147-195 (273)
58 PF12384 Peptidase_A2B: Ty3 tr 28.5 86 0.0019 27.9 4.0 21 332-352 47-67 (177)
59 cd06096 Plasmepsin_5 Plasmepsi 28.2 55 0.0012 32.5 3.3 40 66-105 201-248 (326)
60 cd05486 Cathespin_E Cathepsin 26.0 57 0.0012 32.2 2.9 41 65-105 169-215 (316)
61 cd05471 pepsin_like Pepsin-lik 25.1 80 0.0017 30.1 3.7 43 64-106 169-220 (283)
62 PF15409 PH_8: Pleckstrin homo 23.1 2.3E+02 0.0049 22.5 5.2 29 330-358 56-87 (89)
63 PTZ00147 plasmepsin-1; Provisi 23.0 73 0.0016 33.5 3.1 40 66-105 308-349 (453)
64 PF10731 Anophelin: Thrombin i 22.6 90 0.0019 22.6 2.5 19 1-19 1-19 (65)
65 cd05485 Cathepsin_D_like Cathe 21.9 98 0.0021 30.8 3.7 41 65-105 182-227 (329)
66 PTZ00013 plasmepsin 4 (PM4); P 21.4 80 0.0017 33.2 3.0 40 66-105 307-348 (450)
67 cd05476 pepsin_A_like_plant Ch 21.2 1.1E+02 0.0023 29.4 3.7 18 88-105 176-193 (265)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.8e-69 Score=557.05 Aligned_cols=392 Identities=32% Similarity=0.581 Sum_probs=311.1
Q ss_pred ceEEEEEecCCC-CCC----CChHHHHHHHHHhhHHHhhhhcccC----cccccCC-CCCcEEEEEEecCCCCccEEEEE
Q 011401 24 EFVLPLTHSLSK-TQF----TSTHHLLKSTTTRSAARFRHRHRQQ----QVSLPLS-PGSDYTLSFSLGGSASSPVSLYL 93 (486)
Q Consensus 24 ~~~~~l~~~~~~-~~~----~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~i 93 (486)
.++++|+|++++ +|+ ...+++++++++|+.+|++++.+.. .+..++. .+++|+++|.|||| ||++.|+|
T Consensus 24 ~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~v~i~iGTP-pq~~~vi~ 102 (431)
T PLN03146 24 GFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNGGEYLMNISIGTP-PVPILAIA 102 (431)
T ss_pred ceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccccCcccCCccEEEEEEcCCC-CceEEEEE
Confidence 399999999986 332 3456888899999999999885322 2333333 35799999999999 99999999
Q ss_pred EcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccccccCCCCCCCCCCCC-CCCCC
Q 011401 94 DTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDC-KSFSC 172 (486)
Q Consensus 94 DTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C-~~~~c 172 (486)
||||+++||+|.+ |..|..+ ..|.|||++|+||+.++|.++.|..+... ..| .++.|
T Consensus 103 DTGS~l~Wv~C~~--C~~C~~~-~~~~fdps~SST~~~~~C~s~~C~~~~~~-------------------~~c~~~~~c 160 (431)
T PLN03146 103 DTGSDLIWTQCKP--CDDCYKQ-VSPLFDPKKSSTYKDVSCDSSQCQALGNQ-------------------ASCSDENTC 160 (431)
T ss_pred CCCCCcceEcCCC--CcccccC-CCCcccCCCCCCCcccCCCCcccccCCCC-------------------CCCCCCCCC
Confidence 9999999999998 9999754 46899999999999999999999865431 123 23568
Q ss_pred CCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCC----CcceeeecCCCCCchHhhhcccCCCCCCc
Q 011401 173 PPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG----EPIGVAGFGRGLLSFPAQLASLSPHLGNR 247 (486)
Q Consensus 173 ~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~----~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~ 247 (486)
. |.+.|+||+. .|.+++|+|+|++..+..++++++.|||+..+.+ ..+||||||++.+|+++||.. .+.++
T Consensus 161 ~-y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~---~~~~~ 236 (431)
T PLN03146 161 T-YSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGS---SIGGK 236 (431)
T ss_pred e-eEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhH---hhCCc
Confidence 8 9999999986 8999999999988544446789999999997654 479999999999999999985 23469
Q ss_pred eEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccC
Q 011401 248 FSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDG 327 (486)
Q Consensus 248 FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~ 327 (486)
|||||.+..... . ..|.|+||+.... ....+.||||+.+.. +.+|+|+|++|+||++++.++...+. .
T Consensus 237 FSycL~~~~~~~-~--~~g~l~fG~~~~~------~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~ 304 (431)
T PLN03146 237 FSYCLVPLSSDS-N--GTSKINFGTNAIV------SGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--G 304 (431)
T ss_pred EEEECCCCCCCC-C--CcceEEeCCcccc------CCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--c
Confidence 999997642111 1 4799999985321 224589999986432 46899999999999999988765553 2
Q ss_pred CCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeC
Q 011401 328 QGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALP 407 (486)
Q Consensus 328 ~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~ 407 (486)
.+.+++||||||++++||+++|++|+++|.+.+.. .+.. +....++.||+.... ..+|+|+|+|+| +++.|+
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~--~~~~--~~~~~~~~C~~~~~~--~~~P~i~~~F~G--a~~~l~ 376 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG--ERVS--DPQGLLSLCYSSTSD--IKLPIITAHFTG--ADVKLQ 376 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcc--ccCC--CCCCCCCccccCCCC--CCCCeEEEEECC--CeeecC
Confidence 34578999999999999999999999999988753 1111 112236789985433 248999999996 899999
Q ss_pred CcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 408 RKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 408 ~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
+++|++.. ..+..|+++.... ..+|||+.|||++|||||++++|||||+++|+++
T Consensus 377 ~~~~~~~~---------~~~~~Cl~~~~~~--------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 377 PLNTFVKV---------SEDLVCFAMIPTS--------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred cceeEEEc---------CCCcEEEEEecCC--------CceEECeeeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 99999874 2356899987432 2599999999999999999999999999999863
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-56 Score=454.92 Aligned_cols=342 Identities=36% Similarity=0.638 Sum_probs=277.6
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc-cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCc
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI-LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~-~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~ 149 (486)
..++|+++|.|||| ||.|.|+|||||+++||+|.+ |. .|..+ ..+.|+|++||||+.+.|.++.|.....
T Consensus 43 ~~~~Y~~~i~IGTP-pq~f~v~~DTGS~~lWV~c~~--c~~~C~~~-~~~~f~p~~SSt~~~~~c~~~~c~~~~~----- 113 (398)
T KOG1339|consen 43 SSGEYYGNISIGTP-PQSFTVVLDTGSDLLWVPCAP--CSSACYSQ-HNPIFDPSASSTYKSVGCSSPRCKSLPQ----- 113 (398)
T ss_pred cccccEEEEecCCC-CeeeEEEEeCCCCceeecccc--cccccccc-CCCccCccccccccccCCCCcccccccc-----
Confidence 46789999999999 999999999999999999988 88 78753 2345999999999999999999987642
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccce
Q 011401 150 DLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIG 222 (486)
Q Consensus 150 ~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~G 222 (486)
..|.+..|. |.+.||||+ +.|++++|+|+|++.+ .+.++++.|||+..+.+ ..+|
T Consensus 114 ---------------~~~~~~~C~-y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dG 175 (398)
T KOG1339|consen 114 ---------------SCSPNSSCP-YSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDG 175 (398)
T ss_pred ---------------CcccCCcCc-eEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccce
Confidence 122477898 999999965 6999999999999843 25677899999998853 4799
Q ss_pred eeecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCcee
Q 011401 223 VAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFY 302 (486)
Q Consensus 223 IlGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y 302 (486)
|||||++.+|++.|+... ....++||+||.+..... ..+|.|+||++|..+ +.+.+.||||+.+.. .+|
T Consensus 176 IlGLg~~~~S~~~q~~~~-~~~~~~FS~cL~~~~~~~---~~~G~i~fG~~d~~~-----~~~~l~~tPl~~~~~--~~y 244 (398)
T KOG1339|consen 176 ILGLGRGSLSVPSQLPSF-YNAINVFSYCLSSNGSPS---SGGGSIIFGGVDSSH-----YTGSLTYTPLLSNPS--TYY 244 (398)
T ss_pred EeecCCCCccceeecccc-cCCceeEEEEeCCCCCCC---CCCcEEEECCCcccC-----cCCceEEEeeccCCC--ccE
Confidence 999999999999999973 333458999999864322 147999999999875 778999999998754 589
Q ss_pred EEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHh--hccccccccccccCCCCCcc
Q 011401 303 SVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRL--GRVHERASQIEEKTGLSPCY 380 (486)
Q Consensus 303 ~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~--~~~~~~~~~~~~~~~~~~C~ 380 (486)
.|++++|+||++. .++...+.. +.+++||||||++++||+++|++|.++|.+.+ .. .....+..||
T Consensus 245 ~v~l~~I~vgg~~-~~~~~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~~~--------~~~~~~~~C~ 312 (398)
T KOG1339|consen 245 QVNLDGISVGGKR-PIGSSLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSVVG--------TDGEYFVPCF 312 (398)
T ss_pred EEEEeEEEECCcc-CCCcceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhheeccc--------cCCceeeecc
Confidence 9999999999987 555554432 25789999999999999999999999998864 11 0112345899
Q ss_pred cccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEE
Q 011401 381 YFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEV 460 (486)
Q Consensus 381 ~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~v 460 (486)
...... ..+|.|+|+|++| +.|.+++++|+++..+ ....|++++...+. .+.||||+.|||++++
T Consensus 313 ~~~~~~-~~~P~i~~~f~~g-~~~~l~~~~y~~~~~~--------~~~~Cl~~~~~~~~-----~~~~ilG~~~~~~~~~ 377 (398)
T KOG1339|consen 313 SISTSG-VKLPDITFHFGGG-AVFSLPPKNYLVEVSD--------GGGVCLAFFNGMDS-----GPLWILGDVFQQNYLV 377 (398)
T ss_pred cCCCCc-ccCCcEEEEECCC-cEEEeCccceEEEECC--------CCCceeeEEecCCC-----CceEEEchHHhCCEEE
Confidence 876433 4599999999966 9999999999998532 11119988755432 1479999999999999
Q ss_pred EEeCC-CCEEEEEc--CCCc
Q 011401 461 VYDLE-KGKVGFAR--RQCA 477 (486)
Q Consensus 461 vfD~~-~~rIGfa~--~~C~ 477 (486)
+||+. ++|||||+ ..|+
T Consensus 378 ~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 378 VFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEeCCCCCEEEeccccccCC
Confidence 99999 99999999 6775
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-55 Score=446.26 Aligned_cols=342 Identities=28% Similarity=0.443 Sum_probs=262.8
Q ss_pred ecCCCCcc-EEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccccccCCCC
Q 011401 81 LGGSASSP-VSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAIAKCPL 159 (486)
Q Consensus 81 iGtP~~q~-~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~ 159 (486)
+|+| -.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|....... |.. .|..
T Consensus 2 ~~~~-~~~~~~~~~DTGS~l~WvqC~~-----------------~~sst~~~~~C~s~~C~~~~~~~-----~~~-~~~~ 57 (362)
T cd05489 2 TITP-LKGAVPLVLDLAGPLLWSTCDA-----------------GHSSTYQTVPCSSSVCSLANRYH-----CPG-TCGG 57 (362)
T ss_pred cccC-ccCCeeEEEECCCCceeeeCCC-----------------CCcCCCCccCcCChhhccccccC-----CCc-cccC
Confidence 6887 666 999999999999999865 25889999999999998765432 111 1211
Q ss_pred CCCCCCCCCCCCCCCceee-eCCcee-EeEEEEEEEEeccCCCCc---eeecceEEeceecCCC-----CcceeeecCCC
Q 011401 160 DSIETSDCKSFSCPPFYYA-YGDGSL-VARLYKDSLSMPVSSQKS---LVLHNFTFGCAHTTLG-----EPIGVAGFGRG 229 (486)
Q Consensus 160 ~~~~~~~C~~~~c~~~~~~-YgdGs~-~G~l~~D~v~~~~~~~~~---~~~~~~~FG~~~~~~~-----~~~GIlGLg~~ 229 (486)
.....|.++.|. |... |++|+. .|.+++|+|+|+..++.. .+++++.|||+..... .+|||||||++
T Consensus 58 --~~~~~c~~~~C~-y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~ 134 (362)
T cd05489 58 --APGPGCGNNTCT-AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRS 134 (362)
T ss_pred --CCCCCCCCCcCe-eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCC
Confidence 012367777898 8654 789965 899999999998644322 3688999999987531 37999999999
Q ss_pred CCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeeccccccccc--ccCCCCCeeEeecccCCCCCceeEEeee
Q 011401 230 LLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKR--VNSEEAEFVYTDMLDNPKHPYFYSVGLE 307 (486)
Q Consensus 230 ~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~--~~~~~~~l~~tpl~~~~~~~~~y~v~l~ 307 (486)
++|++.||..+.. .+++|||||.+.. . .+|.|+||+.+..+.. . ...+.+.||||+.++..+.+|+|+|+
T Consensus 135 ~lSl~sql~~~~~-~~~~FS~CL~~~~---~---~~g~l~fG~~~~~~~~~~~-~~~~~~~~tPl~~~~~~~~~Y~v~l~ 206 (362)
T cd05489 135 PLSLPAQLASAFG-VARKFALCLPSSP---G---GPGVAIFGGGPYYLFPPPI-DLSKSLSYTPLLTNPRKSGEYYIGVT 206 (362)
T ss_pred ccchHHHhhhhcC-CCcceEEEeCCCC---C---CCeeEEECCCchhcccccc-cccCCccccccccCCCCCCceEEEEE
Confidence 9999999987433 6799999998641 1 4799999998865300 0 01378999999987644578999999
Q ss_pred ceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccccC---
Q 011401 308 GISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQ--- 384 (486)
Q Consensus 308 ~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~--- 384 (486)
+|+||++++.+++..+.....+.+++||||||++|+||+++|++|.++|.+++.. ....... ....+.||....
T Consensus 207 ~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~-~~~~~~~--~~~~~~C~~~~~~~~ 283 (362)
T cd05489 207 SIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR-IPRVPAA--AVFPELCYPASALGN 283 (362)
T ss_pred EEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc-cCcCCCC--CCCcCccccCCCcCC
Confidence 9999999998876666555556789999999999999999999999999988754 2211110 111368998642
Q ss_pred -ccccCCCeEEEEEeC-CeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEE
Q 011401 385 -VVKGNVPTVELHFVG-SNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVY 462 (486)
Q Consensus 385 -~~~~~~P~i~~~f~g-g~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvf 462 (486)
.....+|+|+|+|+| | ++|+|+|++|+++.. ++..|++|++..... ++.||||+.|||++|++|
T Consensus 284 ~~~~~~~P~it~~f~g~g-~~~~l~~~ny~~~~~---------~~~~Cl~f~~~~~~~----~~~~IlG~~~~~~~~vvy 349 (362)
T cd05489 284 TRLGYAVPAIDLVLDGGG-VNWTIFGANSMVQVK---------GGVACLAFVDGGSEP----RPAVVIGGHQMEDNLLVF 349 (362)
T ss_pred cccccccceEEEEEeCCC-eEEEEcCCceEEEcC---------CCcEEEEEeeCCCCC----CceEEEeeheecceEEEE
Confidence 123469999999997 7 999999999999742 356899998654311 347999999999999999
Q ss_pred eCCCCEEEEEcC
Q 011401 463 DLEKGKVGFARR 474 (486)
Q Consensus 463 D~~~~rIGfa~~ 474 (486)
|++++|||||+.
T Consensus 350 D~~~~riGfa~~ 361 (362)
T cd05489 350 DLEKSRLGFSSS 361 (362)
T ss_pred ECCCCEeecccC
Confidence 999999999974
No 4
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.1e-55 Score=456.16 Aligned_cols=318 Identities=18% Similarity=0.275 Sum_probs=252.9
Q ss_pred ccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccc
Q 011401 65 VSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACS 140 (486)
Q Consensus 65 ~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~ 140 (486)
...|+. .+.+|+++|.|||| ||+|.|+|||||+++||+|.. |. .|..| +.|||++||||+.+.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTP-pQ~f~Vv~DTGSS~lWVps~~--C~~~~C~~~---~~yd~s~SSTy~~~~~~~---- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTP-PKSFVVVFDTGSSNLWIPSKE--CKSGGCAPH---RKFDPKKSSTYTKLKLGD---- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCC-CceEEEEEeCCCCCEEEEchh--cCccccccc---CCCCccccCCcEecCCCC----
Confidence 556665 57899999999999 999999999999999999988 75 46543 589999999999643221
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC--
Q 011401 141 AAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG-- 218 (486)
Q Consensus 141 ~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~-- 218 (486)
.... +.++||+|+..|.+++|+|+|++ +.++++.|||++...+
T Consensus 179 -----------------------------~~~~-~~i~YGsGs~~G~l~~DtV~ig~-----l~i~~q~FG~a~~~s~~~ 223 (482)
T PTZ00165 179 -----------------------------ESAE-TYIQYGTGECVLALGKDTVKIGG-----LKVKHQSIGLAIEESLHP 223 (482)
T ss_pred -----------------------------ccce-EEEEeCCCcEEEEEEEEEEEECC-----EEEccEEEEEEEeccccc
Confidence 0112 77999999999999999999998 7899999999987643
Q ss_pred ----CcceeeecCCCCC---------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCC--
Q 011401 219 ----EPIGVAGFGRGLL---------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSE-- 283 (486)
Q Consensus 219 ----~~~GIlGLg~~~~---------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~-- 283 (486)
.+|||||||++.+ +++.+|.+|+.+.+++||+||.+.. . .+|.|+|||+|+.+ +
T Consensus 224 f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~---~---~~G~l~fGGiD~~~-----~~~ 292 (482)
T PTZ00165 224 FADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDL---N---QPGSISFGSADPKY-----TLE 292 (482)
T ss_pred cccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCC---C---CCCEEEeCCcCHHH-----cCC
Confidence 4799999998764 4678899888888999999997531 1 46999999999864 3
Q ss_pred CCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcc
Q 011401 284 EAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV 363 (486)
Q Consensus 284 ~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 363 (486)
.+++.|+|+... .||.|.+++|+||++.+.... +...+||||||+++++|+++|++|.+++...
T Consensus 293 ~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---- 356 (482)
T PTZ00165 293 GHKIWWFPVIST----DYWEIEVVDILIDGKSLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE---- 356 (482)
T ss_pred CCceEEEEcccc----ceEEEEeCeEEECCEEeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc----
Confidence 578999999763 589999999999998776532 2357999999999999999999888876321
Q ss_pred ccccccccccCCCCCcccccCccccCCCeEEEEEeC--C-eeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCC
Q 011401 364 HERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVG--S-NSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDE 439 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g--g-~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~ 439 (486)
..|+.. ..+|+|+|+|+| + .++|.|+|++|+++... ...++..|+ ++...+..
T Consensus 357 -------------~~C~~~-----~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~-----~~~~~~~C~~g~~~~d~~ 413 (482)
T PTZ00165 357 -------------EDCSNK-----DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGD-----SEEQEHQCVIGIIPMDVP 413 (482)
T ss_pred -------------cccccc-----ccCCceEEEECCCCCceEEEEEchHHeeeeccc-----CCCCCCeEEEEEEECCCC
Confidence 247653 248999999975 1 24899999999987311 012346897 77753221
Q ss_pred cccCCCCceeechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 440 EELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 440 ~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
. +.++.||||++|||+||+|||++|+|||||+++|+..
T Consensus 414 ~--~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 414 A--PRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred C--CCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 1 1246899999999999999999999999999998754
No 5
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.6e-54 Score=429.54 Aligned_cols=295 Identities=40% Similarity=0.709 Sum_probs=239.3
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
+|+++|.|||| ||++.|+|||||+++||+|.+ | |
T Consensus 1 ~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~c~~--c------------------------~------------------- 34 (299)
T cd05472 1 EYVVTVGLGTP-ARDQTVIVDTGSDLTWVQCQP--C------------------------C------------------- 34 (299)
T ss_pred CeEEEEecCCC-CcceEEEecCCCCcccccCCC--C------------------------C-------------------
Confidence 59999999999 999999999999999998765 4 1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCC---CcceeeecCCC
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---EPIGVAGFGRG 229 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---~~~GIlGLg~~ 229 (486)
+|.+.|++|+. +|.+++|+|+|++. ..++++.|||+....+ ..+||||||+.
T Consensus 35 --------------------~~~i~Yg~Gs~~~G~~~~D~v~ig~~----~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~ 90 (299)
T cd05472 35 --------------------LYQVSYGDGSYTTGDLATDTLTLGSS----DVVPGFAFGCGHDNEGLFGGAAGLLGLGRG 90 (299)
T ss_pred --------------------eeeeEeCCCceEEEEEEEEEEEeCCC----CccCCEEEECCccCCCccCCCCEEEECCCC
Confidence 18999999986 89999999999982 2688999999987654 58999999999
Q ss_pred CCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCceeEEeeece
Q 011401 230 LLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGI 309 (486)
Q Consensus 230 ~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~I 309 (486)
.+|++.|+..+ .+++||+||.+.. .. .+|.|+||++|+. .+++.|+|++.++....+|.|+|++|
T Consensus 91 ~~s~~~ql~~~---~~~~FS~~L~~~~---~~--~~G~l~fGg~d~~-------~g~l~~~pv~~~~~~~~~y~v~l~~i 155 (299)
T cd05472 91 KLSLPSQTASS---YGGVFSYCLPDRS---SS--SSGYLSFGAAASV-------PAGASFTPMLSNPRVPTFYYVGLTGI 155 (299)
T ss_pred cchHHHHhhHh---hcCceEEEccCCC---CC--CCceEEeCCcccc-------CCCceECCCccCCCCCCeEEEeeEEE
Confidence 99999998753 4589999998642 11 5799999999863 58899999997654456899999999
Q ss_pred EEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccccCccccC
Q 011401 310 SVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGN 389 (486)
Q Consensus 310 ~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 389 (486)
+||++.+.+++.. ...+.+||||||++++||+++|++|.+++.+.... ..+.. ....++.||..++.....
T Consensus 156 ~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~-~~~~~---~~~~~~~C~~~~~~~~~~ 226 (299)
T cd05472 156 SVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAA-YPRAP---GFSILDTCYDLSGFRSVS 226 (299)
T ss_pred EECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhcc-CCCCC---CCCCCCccCcCCCCcCCc
Confidence 9999988754311 13468999999999999999999999999887643 11111 112244699876544456
Q ss_pred CCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEE
Q 011401 390 VPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKV 469 (486)
Q Consensus 390 ~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rI 469 (486)
+|+|+|+|+++ ++++|+|++|++... ..+..|+++..... .+..+|||+.|||++|+|||++++||
T Consensus 227 ~P~i~f~f~~g-~~~~l~~~~y~~~~~--------~~~~~C~~~~~~~~-----~~~~~ilG~~fl~~~~vvfD~~~~~i 292 (299)
T cd05472 227 VPTVSLHFQGG-ADVELDASGVLYPVD--------DSSQVCLAFAGTSD-----DGGLSIIGNVQQQTFRVVYDVAGGRI 292 (299)
T ss_pred cCCEEEEECCC-CEEEeCcccEEEEec--------CCCCEEEEEeCCCC-----CCCCEEEchHHccceEEEEECCCCEE
Confidence 99999999855 999999999998421 24578998875421 13479999999999999999999999
Q ss_pred EEEcCCC
Q 011401 470 GFARRQC 476 (486)
Q Consensus 470 Gfa~~~C 476 (486)
|||+++|
T Consensus 293 gfa~~~C 299 (299)
T cd05472 293 GFAPGGC 299 (299)
T ss_pred eEecCCC
Confidence 9999999
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.1e-54 Score=433.40 Aligned_cols=301 Identities=25% Similarity=0.427 Sum_probs=238.3
Q ss_pred CcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccc
Q 011401 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLC 152 (486)
Q Consensus 73 ~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c 152 (486)
++|+++|.|||| +|++.|+|||||+++||+|.+ |..|..+ ..+.|+|++|+|++.++|.+..|..
T Consensus 2 ~~Y~~~i~vGtP-~Q~~~v~~DTGS~~~wv~~~~--C~~c~~~-~~~~y~~~~Sst~~~~~C~~~~c~~----------- 66 (326)
T cd06096 2 AYYFIDIFIGNP-PQKQSLILDTGSSSLSFPCSQ--CKNCGIH-MEPPYNLNNSITSSILYCDCNKCCY----------- 66 (326)
T ss_pred ceEEEEEEecCC-CeEEEEEEeCCCCceEEecCC--CCCcCCC-CCCCcCcccccccccccCCCccccc-----------
Confidence 479999999999 999999999999999999998 9999754 3568999999999999999988742
Q ss_pred cccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCC--ceeecceEEeceecCCC-----Ccceee
Q 011401 153 AIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQK--SLVLHNFTFGCAHTTLG-----EPIGVA 224 (486)
Q Consensus 153 ~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~--~~~~~~~~FG~~~~~~~-----~~~GIl 224 (486)
...|.++.|. |.+.|++|+ +.|.+++|+|+|++.... .....++.|||+....+ ..+|||
T Consensus 67 -----------~~~~~~~~~~-~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~Gil 134 (326)
T cd06096 67 -----------CLSCLNNKCE-YSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGIL 134 (326)
T ss_pred -----------cCcCCCCcCc-EEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEE
Confidence 1235567788 999999998 489999999999874311 01122578999987643 479999
Q ss_pred ecCCCCCc----hHhhhcccCCCC--CCceEEeccCCCCCCCCCCCCcceeecccccccccccCCC----------CCee
Q 011401 225 GFGRGLLS----FPAQLASLSPHL--GNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEE----------AEFV 288 (486)
Q Consensus 225 GLg~~~~S----l~~ql~~~~~~~--~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~----------~~l~ 288 (486)
|||+...+ ...+|..++.+. .++||+||.+ ..|.|+||++|+.+ +. +++.
T Consensus 135 GLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~---------~~G~l~~Gg~d~~~-----~~~~~~~~~~~~~~~~ 200 (326)
T cd06096 135 GLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE---------DGGELTIGGYDKDY-----TVRNSSIGNNKVSKIV 200 (326)
T ss_pred EccCCcccccCchhHHHHHhcccccCCceEEEEEcC---------CCeEEEECccChhh-----hcccccccccccCCce
Confidence 99998642 222333333333 3899999975 35999999999864 43 7899
Q ss_pred EeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccc
Q 011401 289 YTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERAS 368 (486)
Q Consensus 289 ~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~ 368 (486)
|+|+... .+|.|.+++|+|+++...... .....+||||||++++||+++|++|.+++
T Consensus 201 ~~p~~~~----~~y~v~l~~i~vg~~~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------ 257 (326)
T cd06096 201 WTPITRK----YYYYVKLEGLSVYGTTSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF------------ 257 (326)
T ss_pred EEeccCC----ceEEEEEEEEEEcccccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc------------
Confidence 9999864 589999999999988611100 12468999999999999999998876543
Q ss_pred cccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCce
Q 011401 369 QIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGA 448 (486)
Q Consensus 369 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ 448 (486)
|+|+|+|++| ++++++|++|++... ...+|+++.. .+ ..+
T Consensus 258 ----------------------P~i~~~f~~g-~~~~i~p~~y~~~~~---------~~~c~~~~~~-~~-------~~~ 297 (326)
T cd06096 258 ----------------------PTITIIFENN-LKIDWKPSSYLYKKE---------SFWCKGGEKS-VS-------NKP 297 (326)
T ss_pred ----------------------CcEEEEEcCC-cEEEECHHHhccccC---------CceEEEEEec-CC-------Cce
Confidence 7899999855 999999999998632 2335555543 22 369
Q ss_pred eechhheeccEEEEeCCCCEEEEEcCCCc
Q 011401 449 TLGNYQQQGFEVVYDLEKGKVGFARRQCA 477 (486)
Q Consensus 449 ILG~~fl~~~~vvfD~~~~rIGfa~~~C~ 477 (486)
|||+.|||++|+|||++++|||||+++|.
T Consensus 298 ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 298 ILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 99999999999999999999999999995
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-54 Score=432.45 Aligned_cols=306 Identities=22% Similarity=0.314 Sum_probs=242.7
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCCcccccccCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSL 146 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~ 146 (486)
.+.+|+++|.|||| +|++.|+|||||+++||+|.. |. .|..+ +.|+|++|+|++..
T Consensus 3 ~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~~~C~~~---~~y~~~~SsT~~~~-------------- 62 (325)
T cd05490 3 MDAQYYGEIGIGTP-PQTFTVVFDTGSSNLWVPSVH--CSLLDIACWLH---HKYNSSKSSTYVKN-------------- 62 (325)
T ss_pred cCCEEEEEEEECCC-CcEEEEEEeCCCccEEEEcCC--CCCCCccccCc---CcCCcccCcceeeC--------------
Confidence 46789999999999 999999999999999999988 65 56543 58999999999741
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Cc
Q 011401 147 PTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EP 220 (486)
Q Consensus 147 ~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~ 220 (486)
.|. |.+.|++|++.|.+++|+|+|++ ..++++.|||++...+ ..
T Consensus 63 ------------------------~~~-~~i~Yg~G~~~G~~~~D~v~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~ 112 (325)
T cd05490 63 ------------------------GTE-FAIQYGSGSLSGYLSQDTVSIGG-----LQVEGQLFGEAVKQPGITFIAAKF 112 (325)
T ss_pred ------------------------CcE-EEEEECCcEEEEEEeeeEEEECC-----EEEcCEEEEEEeeccCCcccceee
Confidence 133 99999999999999999999998 7899999999987543 47
Q ss_pred ceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeeccc
Q 011401 221 IGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLD 294 (486)
Q Consensus 221 ~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~ 294 (486)
+||||||++..| ++.+|++|+.+.+++||+||.+... .. .+|.|+||++|+.+ +.+++.|+|+..
T Consensus 113 dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~--~~--~~G~l~~Gg~d~~~-----~~g~l~~~~~~~ 183 (325)
T cd05490 113 DGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPD--AQ--PGGELMLGGTDPKY-----YTGDLHYVNVTR 183 (325)
T ss_pred eEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCC--CC--CCCEEEECccCHHH-----cCCceEEEEcCc
Confidence 999999997654 5678988888888999999985321 11 46999999999875 789999999974
Q ss_pred CCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccC
Q 011401 295 NPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKT 374 (486)
Q Consensus 295 ~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~ 374 (486)
..+|.|++++|+||++..... ....+||||||+++++|++++++|.+++.+. . ..
T Consensus 184 ----~~~w~v~l~~i~vg~~~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~----~~------- 238 (325)
T cd05490 184 ----KAYWQIHMDQVDVGSGLTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV-P----LI------- 238 (325)
T ss_pred ----ceEEEEEeeEEEECCeeeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc-c----cc-------
Confidence 258999999999998643221 2357999999999999999999999887532 1 10
Q ss_pred CCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechh
Q 011401 375 GLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNY 453 (486)
Q Consensus 375 ~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~ 453 (486)
..+|..+|+....+|+|+|+|+| ++|+|+|++|+++... .....|+ +|+...... ..+..||||+.
T Consensus 239 --~~~~~~~C~~~~~~P~i~f~fgg--~~~~l~~~~y~~~~~~-------~~~~~C~~~~~~~~~~~--~~~~~~ilGd~ 305 (325)
T cd05490 239 --QGEYMIDCEKIPTLPVISFSLGG--KVYPLTGEDYILKVSQ-------RGTTICLSGFMGLDIPP--PAGPLWILGDV 305 (325)
T ss_pred --CCCEEecccccccCCCEEEEECC--EEEEEChHHeEEeccC-------CCCCEEeeEEEECCCCC--CCCceEEEChH
Confidence 11233444433458999999976 8999999999987432 2345798 565432111 12357999999
Q ss_pred heeccEEEEeCCCCEEEEEc
Q 011401 454 QQQGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 454 fl~~~~vvfD~~~~rIGfa~ 473 (486)
|||++|+|||++++|||||+
T Consensus 306 flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 306 FIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred hheeeEEEEEcCCcEeeccC
Confidence 99999999999999999996
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.7e-54 Score=429.35 Aligned_cols=301 Identities=20% Similarity=0.265 Sum_probs=241.0
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccc
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLC 152 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c 152 (486)
|+++|.|||| +|++.|+|||||+++||+|.. |. .|..+ +.|+|++|+|++...
T Consensus 1 Y~~~i~iGtP-~Q~~~v~~DTGSs~~Wv~s~~--C~~~~C~~~---~~y~~~~SsT~~~~~------------------- 55 (316)
T cd05486 1 YFGQISIGTP-PQNFTVIFDTGSSNLWVPSIY--CTSQACTKH---NRFQPSESSTYVSNG------------------- 55 (316)
T ss_pred CeEEEEECCC-CcEEEEEEcCCCccEEEecCC--CCCcccCcc---ceECCCCCcccccCC-------------------
Confidence 8999999999 999999999999999999988 75 57643 589999999997432
Q ss_pred cccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccceeeec
Q 011401 153 AIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGVAGF 226 (486)
Q Consensus 153 ~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GIlGL 226 (486)
|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+ ..+|||||
T Consensus 56 -------------------~~-~~i~Yg~g~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGL 110 (316)
T cd05486 56 -------------------EA-FSIQYGTGSLTGIIGIDQVTVEG-----ITVQNQQFAESVSEPGSTFQDSEFDGILGL 110 (316)
T ss_pred -------------------cE-EEEEeCCcEEEEEeeecEEEECC-----EEEcCEEEEEeeccCcccccccccceEecc
Confidence 33 99999999999999999999998 7899999999876432 57999999
Q ss_pred CCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCc
Q 011401 227 GRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPY 300 (486)
Q Consensus 227 g~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~ 300 (486)
|++.++ ++.+|.+|+.+..++||+||.+.... . ..|.|+||++|+.+ +.+++.|+|+.. ..
T Consensus 111 g~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~--~--~~g~l~fGg~d~~~-----~~g~l~~~pi~~----~~ 177 (316)
T cd05486 111 AYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNS--A--DGGELVFGGFDTSR-----FSGQLNWVPVTV----QG 177 (316)
T ss_pred CchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCC--C--CCcEEEEcccCHHH-----cccceEEEECCC----ce
Confidence 987654 57788888878789999999864211 1 46999999999875 889999999975 35
Q ss_pred eeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcc
Q 011401 301 FYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCY 380 (486)
Q Consensus 301 ~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~ 380 (486)
+|.|.+++|+||++.+..+. ...+||||||+++++|++++++|.+.+.+... +.+|
T Consensus 178 ~w~v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~---------------~~~~ 233 (316)
T cd05486 178 YWQIQLDNIQVGGTVIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATAT---------------DGEY 233 (316)
T ss_pred EEEEEeeEEEEecceEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCccc---------------CCcE
Confidence 89999999999998765322 35799999999999999999998776642210 1234
Q ss_pred cccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhheeccE
Q 011401 381 YFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQQGFE 459 (486)
Q Consensus 381 ~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~~~~ 459 (486)
..+|+....+|+|+|+|+| ++++|+|++|++... ......|+ +|+...... ..+..||||+.|||++|
T Consensus 234 ~~~C~~~~~~p~i~f~f~g--~~~~l~~~~y~~~~~-------~~~~~~C~~~~~~~~~~~--~~~~~~ILGd~flr~~y 302 (316)
T cd05486 234 GVDCSTLSLMPSVTFTING--IPYSLSPQAYTLEDQ-------SDGGGYCSSGFQGLDIPP--PAGPLWILGDVFIRQYY 302 (316)
T ss_pred EEeccccccCCCEEEEECC--EEEEeCHHHeEEecc-------cCCCCEEeeEEEECCCCC--CCCCeEEEchHHhcceE
Confidence 4444433459999999986 999999999998632 12346798 565432111 12357999999999999
Q ss_pred EEEeCCCCEEEEEc
Q 011401 460 VVYDLEKGKVGFAR 473 (486)
Q Consensus 460 vvfD~~~~rIGfa~ 473 (486)
+|||++++|||||+
T Consensus 303 ~vfD~~~~~IGfA~ 316 (316)
T cd05486 303 SVFDRGNNRVGFAP 316 (316)
T ss_pred EEEeCCCCEeeccC
Confidence 99999999999996
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.3e-54 Score=427.76 Aligned_cols=296 Identities=20% Similarity=0.300 Sum_probs=243.4
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCccc--ccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECIL--CENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPT 148 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~--C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~ 148 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.. |.. |.. .+.|+|++|+|++...
T Consensus 7 ~~~~Y~~~i~vGtp-~q~~~v~~DTGS~~~wv~~~~--C~~~~c~~---~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 7 LDMEYYGTISIGTP-PQDFTVIFDTGSSNLWVPSVY--CSSQACSN---HNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred cCCEEEEEEEeCCC-CcEEEEEEeCCCccEEEecCC--CCcccccc---cCcCCCCCCcceeeCC---------------
Confidence 36789999999999 999999999999999999988 864 543 4699999999998532
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccce
Q 011401 149 SDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIG 222 (486)
Q Consensus 149 ~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~G 222 (486)
|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+ ..+|
T Consensus 66 -----------------------~~-~~~~yg~gs~~G~~~~D~v~ig~-----~~i~~~~fg~~~~~~~~~~~~~~~dG 116 (317)
T cd05478 66 -----------------------QP-LSIQYGTGSMTGILGYDTVQVGG-----ISDTNQIFGLSETEPGSFFYYAPFDG 116 (317)
T ss_pred -----------------------cE-EEEEECCceEEEEEeeeEEEECC-----EEECCEEEEEEEecCccccccccccc
Confidence 23 99999999999999999999998 7899999999986543 3799
Q ss_pred eeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCC
Q 011401 223 VAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNP 296 (486)
Q Consensus 223 IlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~ 296 (486)
|||||++.+ +++.+|++|+.+.+++||+||.+.. . .+|.|+||++|+.+ +.+++.|+|+..
T Consensus 117 ilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~----~--~~g~l~~Gg~d~~~-----~~g~l~~~p~~~-- 183 (317)
T cd05478 117 ILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG----Q--QGSVVTFGGIDPSY-----YTGSLNWVPVTA-- 183 (317)
T ss_pred eeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC----C--CCeEEEEcccCHHH-----ccCceEEEECCC--
Confidence 999998754 4888999988888899999998742 1 46899999999874 889999999975
Q ss_pred CCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCC
Q 011401 297 KHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGL 376 (486)
Q Consensus 297 ~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~ 376 (486)
..+|.|.+++|+||++.+.... +..+||||||++++||+++|++|.+++......
T Consensus 184 --~~~w~v~l~~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~-------------- 238 (317)
T cd05478 184 --ETYWQITVDSVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQ-------------- 238 (317)
T ss_pred --CcEEEEEeeEEEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCcccc--------------
Confidence 3589999999999999875432 357999999999999999999999887543210
Q ss_pred CCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhhe
Q 011401 377 SPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQ 455 (486)
Q Consensus 377 ~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl 455 (486)
..+|..+|.....+|.|+|+|+| ++++|||++|+++. ...|+ +|..... ...||||+.||
T Consensus 239 ~~~~~~~C~~~~~~P~~~f~f~g--~~~~i~~~~y~~~~-----------~~~C~~~~~~~~~------~~~~IlG~~fl 299 (317)
T cd05478 239 NGEMVVNCSSISSMPDVVFTING--VQYPLPPSAYILQD-----------QGSCTSGFQSMGL------GELWILGDVFI 299 (317)
T ss_pred CCcEEeCCcCcccCCcEEEEECC--EEEEECHHHheecC-----------CCEEeEEEEeCCC------CCeEEechHHh
Confidence 12344444333358999999976 89999999999751 45798 5654332 24799999999
Q ss_pred eccEEEEeCCCCEEEEEc
Q 011401 456 QGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 456 ~~~~vvfD~~~~rIGfa~ 473 (486)
|++|+|||++|+|||||+
T Consensus 300 ~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 300 RQYYSVFDRANNKVGLAP 317 (317)
T ss_pred cceEEEEeCCCCEEeecC
Confidence 999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.5e-53 Score=423.57 Aligned_cols=303 Identities=21% Similarity=0.336 Sum_probs=245.7
Q ss_pred CCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCc
Q 011401 72 GSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149 (486)
Q Consensus 72 ~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~ 149 (486)
|..|+++|.|||| ||++.|+|||||+++||+|.. |. .|.. .+.|+|++|+|++..
T Consensus 1 ~~~y~~~i~iGtP-~q~~~v~~DTGS~~~wv~~~~--C~~~~C~~---~~~f~~~~SsT~~~~----------------- 57 (318)
T cd05477 1 DMSYYGEISIGTP-PQNFLVLFDTGSSNLWVPSVL--CQSQACTN---HTKFNPSQSSTYSTN----------------- 57 (318)
T ss_pred CcEEEEEEEECCC-CcEEEEEEeCCCccEEEccCC--CCCccccc---cCCCCcccCCCceEC-----------------
Confidence 4579999999999 999999999999999999988 65 5754 358999999999842
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Cccee
Q 011401 150 DLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGV 223 (486)
Q Consensus 150 ~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GI 223 (486)
.|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+ ..+||
T Consensus 58 ---------------------~~~-~~~~Yg~Gs~~G~~~~D~i~~g~-----~~i~~~~Fg~~~~~~~~~~~~~~~~Gi 110 (318)
T cd05477 58 ---------------------GET-FSLQYGSGSLTGIFGYDTVTVQG-----IIITNQEFGLSETEPGTNFVYAQFDGI 110 (318)
T ss_pred ---------------------CcE-EEEEECCcEEEEEEEeeEEEECC-----EEEcCEEEEEEEecccccccccceeeE
Confidence 234 99999999999999999999998 7889999999987542 36999
Q ss_pred eecCCCC------CchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCC
Q 011401 224 AGFGRGL------LSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPK 297 (486)
Q Consensus 224 lGLg~~~------~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~ 297 (486)
||||++. .+++.||++++.+.+++||+||.+.. .. ..|.|+||++|+.+ +.+++.|+|+...
T Consensus 111 lGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~---~~--~~g~l~fGg~d~~~-----~~g~l~~~pv~~~-- 178 (318)
T cd05477 111 LGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ---GQ--QGGELVFGGVDNNL-----YTGQIYWTPVTSE-- 178 (318)
T ss_pred eecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC---CC--CCCEEEEcccCHHH-----cCCceEEEecCCc--
Confidence 9999853 47889999988888999999998642 11 46999999999874 7899999999753
Q ss_pred CCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCC
Q 011401 298 HPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLS 377 (486)
Q Consensus 298 ~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 377 (486)
.+|.|.+++|+||++.+.... .+..+||||||++++||+++|++|++.+...... .
T Consensus 179 --~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~--------------~ 234 (318)
T cd05477 179 --TYWQIGIQGFQINGQATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ--------------Y 234 (318)
T ss_pred --eEEEEEeeEEEECCEEecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc--------------C
Confidence 589999999999998875422 1347999999999999999999999888543211 1
Q ss_pred CcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhhee
Q 011401 378 PCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQQ 456 (486)
Q Consensus 378 ~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~ 456 (486)
.+|..+|.....+|.|+|+|+| +++.|++++|++.. ...|+ +|.+..... ..+...||||+.|||
T Consensus 235 ~~~~~~C~~~~~~p~l~~~f~g--~~~~v~~~~y~~~~-----------~~~C~~~i~~~~~~~-~~~~~~~ilG~~fl~ 300 (318)
T cd05477 235 GQYVVNCNNIQNLPTLTFTING--VSFPLPPSAYILQN-----------NGYCTVGIEPTYLPS-QNGQPLWILGDVFLR 300 (318)
T ss_pred CCEEEeCCccccCCcEEEEECC--EEEEECHHHeEecC-----------CCeEEEEEEecccCC-CCCCceEEEcHHHhh
Confidence 2455555444458999999986 99999999999752 34787 776432110 012247999999999
Q ss_pred ccEEEEeCCCCEEEEEcC
Q 011401 457 GFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 457 ~~~vvfD~~~~rIGfa~~ 474 (486)
++|+|||++++|||||++
T Consensus 301 ~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 301 QYYSVYDLGNNQVGFATA 318 (318)
T ss_pred heEEEEeCCCCEEeeeeC
Confidence 999999999999999985
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.7e-53 Score=421.64 Aligned_cols=300 Identities=24% Similarity=0.369 Sum_probs=241.1
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPT 148 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~ 148 (486)
.+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++..
T Consensus 7 ~~~~Y~~~i~iGtp-~q~~~v~~DTGSs~~wv~~~~--C~~~~C~~~---~~y~~~~Sst~~~~---------------- 64 (320)
T cd05488 7 LNAQYFTDITLGTP-PQKFKVILDTGSSNLWVPSVK--CGSIACFLH---SKYDSSASSTYKAN---------------- 64 (320)
T ss_pred CCCEEEEEEEECCC-CcEEEEEEecCCcceEEEcCC--CCCcccCCc---ceECCCCCcceeeC----------------
Confidence 46789999999999 999999999999999999998 75 57644 48999999998732
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccce
Q 011401 149 SDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIG 222 (486)
Q Consensus 149 ~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~G 222 (486)
.|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+ ..+|
T Consensus 65 ----------------------~~~-~~~~y~~g~~~G~~~~D~v~ig~-----~~~~~~~f~~a~~~~g~~~~~~~~dG 116 (320)
T cd05488 65 ----------------------GTE-FKIQYGSGSLEGFVSQDTLSIGD-----LTIKKQDFAEATSEPGLAFAFGKFDG 116 (320)
T ss_pred ----------------------CCE-EEEEECCceEEEEEEEeEEEECC-----EEECCEEEEEEecCCCcceeeeeece
Confidence 234 99999999999999999999988 7888999999986543 4699
Q ss_pred eeecCCCCCchH------hhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCC
Q 011401 223 VAGFGRGLLSFP------AQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNP 296 (486)
Q Consensus 223 IlGLg~~~~Sl~------~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~ 296 (486)
|||||++..+.. .+|.+|+.+.+++||+||.+.. . ..|.|+||++|+.+ +.+++.|+|++..
T Consensus 117 ilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~----~--~~G~l~fGg~d~~~-----~~g~l~~~p~~~~- 184 (320)
T cd05488 117 ILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE----E--DGGEATFGGIDESR-----FTGKITWLPVRRK- 184 (320)
T ss_pred EEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC----C--CCcEEEECCcCHHH-----cCCceEEEeCCcC-
Confidence 999999876543 4677777888899999998742 1 57999999999874 7899999999852
Q ss_pred CCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCC
Q 011401 297 KHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGL 376 (486)
Q Consensus 297 ~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~ 376 (486)
.+|.|++++|+||++.+... ...++|||||++++||++++++|.+++.+... .
T Consensus 185 ---~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~--------------~ 237 (320)
T cd05488 185 ---AYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS--------------W 237 (320)
T ss_pred ---cEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc--------------c
Confidence 58999999999999877543 24799999999999999999998887743211 1
Q ss_pred CCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhhee
Q 011401 377 SPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQ 456 (486)
Q Consensus 377 ~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~ 456 (486)
..+|..+|.....+|.|+|+|+| ++++|+|++|+++. ...|+..+...+... ..+..||||+.|||
T Consensus 238 ~~~~~~~C~~~~~~P~i~f~f~g--~~~~i~~~~y~~~~-----------~g~C~~~~~~~~~~~-~~~~~~ilG~~fl~ 303 (320)
T cd05488 238 NGQYTVDCSKVDSLPDLTFNFDG--YNFTLGPFDYTLEV-----------SGSCISAFTGMDFPE-PVGPLAIVGDAFLR 303 (320)
T ss_pred CCcEEeeccccccCCCEEEEECC--EEEEECHHHheecC-----------CCeEEEEEEECcCCC-CCCCeEEEchHHhh
Confidence 12344444433458999999986 99999999999752 236995442222111 11347999999999
Q ss_pred ccEEEEeCCCCEEEEEc
Q 011401 457 GFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 457 ~~~vvfD~~~~rIGfa~ 473 (486)
++|+|||++++|||||+
T Consensus 304 ~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 304 KYYSVYDLGNNAVGLAK 320 (320)
T ss_pred heEEEEeCCCCEEeecC
Confidence 99999999999999996
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.8e-52 Score=417.90 Aligned_cols=295 Identities=21% Similarity=0.324 Sum_probs=237.3
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc---cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI---LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLP 147 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~---~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~ 147 (486)
.+.+|+++|.|||| +|++.|+|||||+++||+|.. |. .|..+ +.|+|++|+|++..+
T Consensus 7 ~~~~Y~~~i~iGtP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~~C~~~---~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 7 LDAQYFGEIGIGTP-PQKFTVIFDTGSSNLWVPSSK--CYFSIACYFH---SKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred CCCEEEEEEEECCC-CeEEEEEECCCccceEEecCC--CCCCcccccc---CcCCcccCCCcccCC--------------
Confidence 47789999999999 999999999999999999998 75 68654 589999999987421
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccc
Q 011401 148 TSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPI 221 (486)
Q Consensus 148 ~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~ 221 (486)
+. +.+.||+|++.|.+++|+|+|++ ..++++.|||++...+ ..+
T Consensus 67 ------------------------~~-~~i~Yg~G~~~G~~~~D~v~ig~-----~~v~~~~f~~~~~~~~~~~~~~~~d 116 (317)
T cd06098 67 ------------------------TS-ASIQYGTGSISGFFSQDSVTVGD-----LVVKNQVFIEATKEPGLTFLLAKFD 116 (317)
T ss_pred ------------------------CE-EEEEcCCceEEEEEEeeEEEECC-----EEECCEEEEEEEecCCccccccccc
Confidence 12 88999999999999999999998 7899999999986532 479
Q ss_pred eeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccC
Q 011401 222 GVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDN 295 (486)
Q Consensus 222 GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~ 295 (486)
||||||++..+ +..+|.+|+.+.+++||+||.+... .. ..|.|+||++|+.+ +.+++.|+|+...
T Consensus 117 GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~--~~--~~G~l~fGg~d~~~-----~~g~l~~~pv~~~ 187 (317)
T cd06098 117 GILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPD--EE--EGGELVFGGVDPKH-----FKGEHTYVPVTRK 187 (317)
T ss_pred eeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCC--CC--CCcEEEECccChhh-----cccceEEEecCcC
Confidence 99999997654 4567888777778999999976321 11 47999999999875 8899999999742
Q ss_pred CCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCC
Q 011401 296 PKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTG 375 (486)
Q Consensus 296 ~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~ 375 (486)
.+|.|.+++|+||++.+.... ....+||||||+++++|+++++++. .
T Consensus 188 ----~~w~v~l~~i~v~g~~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~--------~------------- 234 (317)
T cd06098 188 ----GYWQFEMGDVLIGGKSTGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN--------S------------- 234 (317)
T ss_pred ----cEEEEEeCeEEECCEEeeecC--------CCcEEEEecCCcceeCCHHHHHhhh--------c-------------
Confidence 589999999999998775432 1347999999999999998776553 1
Q ss_pred CCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhh
Q 011401 376 LSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQ 454 (486)
Q Consensus 376 ~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~f 454 (486)
...|+... .+|+|+|+|+| ++++|+|++|+++..+ .....|+ +|+...... ..+..||||+.|
T Consensus 235 ~~~C~~~~-----~~P~i~f~f~g--~~~~l~~~~yi~~~~~-------~~~~~C~~~~~~~~~~~--~~~~~~IlGd~F 298 (317)
T cd06098 235 AVDCNSLS-----SMPNVSFTIGG--KTFELTPEQYILKVGE-------GAAAQCISGFTALDVPP--PRGPLWILGDVF 298 (317)
T ss_pred cCCccccc-----cCCcEEEEECC--EEEEEChHHeEEeecC-------CCCCEEeceEEECCCCC--CCCCeEEechHH
Confidence 12477532 38999999976 9999999999987432 2345898 565332111 123579999999
Q ss_pred eeccEEEEeCCCCEEEEEc
Q 011401 455 QQGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 455 l~~~~vvfD~~~~rIGfa~ 473 (486)
||++|+|||++++|||||+
T Consensus 299 lr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 299 MGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred hcccEEEEeCCCCEEeecC
Confidence 9999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.5e-52 Score=417.80 Aligned_cols=305 Identities=23% Similarity=0.335 Sum_probs=244.3
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCCcccccccCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSL 146 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~ 146 (486)
.+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|.. .+.|+|++|+|++...
T Consensus 8 ~~~~Y~~~i~vGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~~~c~~---~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 8 MDAQYYGVITIGTP-PQSFKVVFDTGSSNLWVPSKK--CSWTNIACLL---HNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred cCCeEEEEEEECCC-CcEEEEEEcCCCccEEEecCC--CCCCCccccC---CCeECCcCCCCeEECC-------------
Confidence 46789999999999 999999999999999999988 75 4653 3589999999988432
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Cc
Q 011401 147 PTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EP 220 (486)
Q Consensus 147 ~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~ 220 (486)
|. |.+.|++|++.|.+++|+|+|++ ..++++.|||+....+ ..
T Consensus 69 -------------------------~~-~~i~Y~~g~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~ 117 (329)
T cd05485 69 -------------------------TE-FAIQYGSGSLSGFLSTDTVSVGG-----VSVKGQTFAEAINEPGLTFVAAKF 117 (329)
T ss_pred -------------------------eE-EEEEECCceEEEEEecCcEEECC-----EEECCEEEEEEEecCCcccccccc
Confidence 34 99999999999999999999998 7888999999976532 46
Q ss_pred ceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeeccc
Q 011401 221 IGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLD 294 (486)
Q Consensus 221 ~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~ 294 (486)
+||||||++..| ++.||++|+.+.+++||+||.+... .. ..|.|+||++|+.+ +.+++.|+|+..
T Consensus 118 ~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~--~~--~~G~l~fGg~d~~~-----~~g~l~~~p~~~ 188 (329)
T cd05485 118 DGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPS--AK--EGGELILGGSDPKH-----YTGNFTYLPVTR 188 (329)
T ss_pred ceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCC--CC--CCcEEEEcccCHHH-----cccceEEEEcCC
Confidence 999999998765 4578888877778999999986421 11 46999999999874 789999999974
Q ss_pred CCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccC
Q 011401 295 NPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKT 374 (486)
Q Consensus 295 ~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~ 374 (486)
..+|.|.+++|+|+++.+.. .+..+||||||++++||+++|++|.+++.... .
T Consensus 189 ----~~~~~v~~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~---~---------- 241 (329)
T cd05485 189 ----KGYWQFKMDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP---I---------- 241 (329)
T ss_pred ----ceEEEEEeeEEEECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc---c----------
Confidence 36899999999999986642 13479999999999999999999988775321 0
Q ss_pred CCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechh
Q 011401 375 GLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNY 453 (486)
Q Consensus 375 ~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~ 453 (486)
...+|..+|+....+|.|+|+|+| +++.|+|++|+++... .+...|+ +++...... ..+..||||+.
T Consensus 242 -~~~~~~~~C~~~~~~p~i~f~fgg--~~~~i~~~~yi~~~~~-------~~~~~C~~~~~~~~~~~--~~~~~~IlG~~ 309 (329)
T cd05485 242 -IGGEYMVNCSAIPSLPDITFVLGG--KSFSLTGKDYVLKVTQ-------MGQTICLSGFMGIDIPP--PAGPLWILGDV 309 (329)
T ss_pred -cCCcEEEeccccccCCcEEEEECC--EEeEEChHHeEEEecC-------CCCCEEeeeEEECcCCC--CCCCeEEEchH
Confidence 012455555544458999999976 9999999999987532 2345798 566432111 11347999999
Q ss_pred heeccEEEEeCCCCEEEEEc
Q 011401 454 QQQGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 454 fl~~~~vvfD~~~~rIGfa~ 473 (486)
|||++|+|||++++|||||+
T Consensus 310 fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 310 FIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred HhccceEEEeCCCCEEeecC
Confidence 99999999999999999985
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.8e-52 Score=415.94 Aligned_cols=305 Identities=21% Similarity=0.301 Sum_probs=243.0
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCCcccccccCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSL 146 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~ 146 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.. |. .|..+ +.|+|++|+|++...
T Consensus 5 ~~~~y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~~~c~~~---~~y~~~~SsT~~~~~------------- 65 (326)
T cd05487 5 LDTQYYGEIGIGTP-PQTFKVVFDTGSSNLWVPSSK--CSPLYTACVTH---NLYDASDSSTYKENG------------- 65 (326)
T ss_pred CCCeEEEEEEECCC-CcEEEEEEeCCccceEEccCC--CcCcchhhccc---CcCCCCCCeeeeECC-------------
Confidence 46789999999999 999999999999999999887 65 46543 589999999998432
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Cc
Q 011401 147 PTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EP 220 (486)
Q Consensus 147 ~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~ 220 (486)
|. |.+.|++|++.|.+++|+|+|++ ..+. +.|||+..... ..
T Consensus 66 -------------------------~~-~~~~Yg~g~~~G~~~~D~v~~g~-----~~~~-~~fg~~~~~~~~~~~~~~~ 113 (326)
T cd05487 66 -------------------------TE-FTIHYASGTVKGFLSQDIVTVGG-----IPVT-QMFGEVTALPAIPFMLAKF 113 (326)
T ss_pred -------------------------EE-EEEEeCCceEEEEEeeeEEEECC-----EEee-EEEEEEEeccCCccceeec
Confidence 34 99999999999999999999998 5554 78999886432 47
Q ss_pred ceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeeccc
Q 011401 221 IGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLD 294 (486)
Q Consensus 221 ~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~ 294 (486)
+||||||++.. +++.+|..|+.+.+++||+||.+.... ...|.|+||++|+.+ +.+++.|+|+..
T Consensus 114 dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~----~~~G~l~fGg~d~~~-----y~g~l~~~~~~~ 184 (326)
T cd05487 114 DGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSH----SLGGEIVLGGSDPQH-----YQGDFHYINTSK 184 (326)
T ss_pred ceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCC----CCCcEEEECCcChhh-----ccCceEEEECCc
Confidence 99999998754 456788888888899999999864211 157999999999875 889999999864
Q ss_pred CCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccC
Q 011401 295 NPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKT 374 (486)
Q Consensus 295 ~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~ 374 (486)
..+|.|.+++|+||++.+.... +..+||||||++++||+++|+++++++.+...
T Consensus 185 ----~~~w~v~l~~i~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------------- 238 (326)
T cd05487 185 ----TGFWQIQMKGVSVGSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER------------- 238 (326)
T ss_pred ----CceEEEEecEEEECCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc-------------
Confidence 2589999999999998765432 34799999999999999999999888743211
Q ss_pred CCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechh
Q 011401 375 GLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNY 453 (486)
Q Consensus 375 ~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~ 453 (486)
..+|..+|+....+|.|+|+|+| .+++|++++|+++..+ ..+..|+ +|....... ..++.||||+.
T Consensus 239 --~~~y~~~C~~~~~~P~i~f~fgg--~~~~v~~~~yi~~~~~-------~~~~~C~~~~~~~~~~~--~~~~~~ilG~~ 305 (326)
T cd05487 239 --LGDYVVKCNEVPTLPDISFHLGG--KEYTLSSSDYVLQDSD-------FSDKLCTVAFHAMDIPP--PTGPLWVLGAT 305 (326)
T ss_pred --CCCEEEeccccCCCCCEEEEECC--EEEEeCHHHhEEeccC-------CCCCEEEEEEEeCCCCC--CCCCeEEEehH
Confidence 11344455444458999999976 8999999999987432 2346787 666432211 11357999999
Q ss_pred heeccEEEEeCCCCEEEEEcC
Q 011401 454 QQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 454 fl~~~~vvfD~~~~rIGfa~~ 474 (486)
|||++|+|||++++|||||++
T Consensus 306 flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 306 FIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred HhhccEEEEeCCCCEEeeeeC
Confidence 999999999999999999985
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-51 Score=419.27 Aligned_cols=327 Identities=19% Similarity=0.289 Sum_probs=240.8
Q ss_pred CcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccc
Q 011401 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLC 152 (486)
Q Consensus 73 ~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c 152 (486)
..|+++|.|||| +|++.|+|||||+++||+|.+ |..| .+.|+|++|+|++..+
T Consensus 2 ~~Y~~~i~iGtP-~Q~~~v~~DTGSs~lWv~~~~--~~~~-----~~~f~~~~SsT~~~~~------------------- 54 (364)
T cd05473 2 QGYYIEMLIGTP-PQKLNILVDTGSSNFAVAAAP--HPFI-----HTYFHRELSSTYRDLG------------------- 54 (364)
T ss_pred CceEEEEEecCC-CceEEEEEecCCcceEEEcCC--Cccc-----cccCCchhCcCcccCC-------------------
Confidence 479999999999 999999999999999999987 5333 3489999999998543
Q ss_pred cccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccceeeec
Q 011401 153 AIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGVAGF 226 (486)
Q Consensus 153 ~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GIlGL 226 (486)
|. |.+.||+|++.|.+++|+|+|++.. ...+. +.|++.....+ ..+|||||
T Consensus 55 -------------------~~-~~i~Yg~Gs~~G~~~~D~v~ig~~~--~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGL 111 (364)
T cd05473 55 -------------------KG-VTVPYTQGSWEGELGTDLVSIPKGP--NVTFR-ANIAAITESENFFLNGSNWEGILGL 111 (364)
T ss_pred -------------------ce-EEEEECcceEEEEEEEEEEEECCCC--ccceE-EeeEEEeccccceecccccceeeee
Confidence 34 9999999999999999999998621 11221 34556554321 46999999
Q ss_pred CCCCC--------chHhhhcccCCCCCCceEEeccCCCCC--C-CCCCCCcceeecccccccccccCCCCCeeEeecccC
Q 011401 227 GRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFD--S-NRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDN 295 (486)
Q Consensus 227 g~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~--~-~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~ 295 (486)
|++.+ ++..+|.+|+. ++++||++|...... . ......|.|+||++|+.+ +.+++.|+|++..
T Consensus 112 g~~~l~~~~~~~~~~~~~l~~q~~-~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~-----~~g~l~~~p~~~~ 185 (364)
T cd05473 112 AYAELARPDSSVEPFFDSLVKQTG-IPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSL-----YKGDIWYTPIREE 185 (364)
T ss_pred cccccccCCCCCCCHHHHHHhccC-CccceEEEecccccccccccccCCCcEEEeCCcCHhh-----cCCCceEEecCcc
Confidence 98765 35567887665 467999977431110 0 001147999999999875 8899999999752
Q ss_pred CCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCC
Q 011401 296 PKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTG 375 (486)
Q Consensus 296 ~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~ 375 (486)
.+|.|.+++|+||++.+..+...+ ....+||||||++++||+++|++|.+++.++... ...+. ....+
T Consensus 186 ----~~~~v~l~~i~vg~~~~~~~~~~~-----~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~--~~~~~-~~~~~ 253 (364)
T cd05473 186 ----WYYEVIILKLEVGGQSLNLDCKEY-----NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI--EDFPD-GFWLG 253 (364)
T ss_pred ----eeEEEEEEEEEECCEecccccccc-----cCccEEEeCCCcceeCCHHHHHHHHHHHHhhccc--ccCCc-cccCc
Confidence 589999999999999887543221 1246999999999999999999999999887532 11110 00011
Q ss_pred -CCCcccccCccccCCCeEEEEEeCC----eeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceee
Q 011401 376 -LSPCYYFDQVVKGNVPTVELHFVGS----NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATL 450 (486)
Q Consensus 376 -~~~C~~~~~~~~~~~P~i~~~f~gg----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~IL 450 (486)
...|+.........+|+|+|+|+|+ .++++|+|++|+..... ......|+++..... ...|||
T Consensus 254 ~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~------~~~~~~C~~~~~~~~------~~~~IL 321 (364)
T cd05473 254 SQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPVED------HGTQLDCYKFAISQS------TNGTVI 321 (364)
T ss_pred ceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhcc------CCCcceeeEEeeecC------CCceEE
Confidence 2368875432223599999999762 25789999999975321 113467986542211 236999
Q ss_pred chhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 451 GNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 451 G~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
|++|||++|+|||++++|||||+++|+++
T Consensus 322 G~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 322 GAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred eeeeEcceEEEEECCCCEEeeEecccccc
Confidence 99999999999999999999999999875
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.2e-51 Score=421.72 Aligned_cols=306 Identities=22% Similarity=0.309 Sum_probs=240.4
Q ss_pred CcccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcc
Q 011401 63 QQVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPA 138 (486)
Q Consensus 63 ~~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~ 138 (486)
....+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|||++|+|++..+
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP-~Q~f~Vi~DTGSsdlWVps~~--C~~~~C~~~---~~yd~s~SsT~~~~~----- 194 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDN-GQKFNFIFDTGSANLWVPSIK--CTTEGCETK---NLYDSSKSKTYEKDG----- 194 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCC-CeEEEEEEeCCCCcEEEeecC--CCcccccCC---CccCCccCcceEECC-----
Confidence 34556664 57799999999999 999999999999999999998 76 46543 589999999997532
Q ss_pred cccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC
Q 011401 139 CSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG 218 (486)
Q Consensus 139 C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~ 218 (486)
|. |.+.||+|++.|.+++|+|+|++ ++++ ..|+|+.+..+
T Consensus 195 ---------------------------------~~-f~i~Yg~GsvsG~~~~DtVtiG~-----~~v~-~qF~~~~~~~~ 234 (453)
T PTZ00147 195 ---------------------------------TK-VEMNYVSGTVSGFFSKDLVTIGN-----LSVP-YKFIEVTDTNG 234 (453)
T ss_pred ---------------------------------CE-EEEEeCCCCEEEEEEEEEEEECC-----EEEE-EEEEEEEeccC
Confidence 23 99999999999999999999998 6777 57888775422
Q ss_pred --------CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCC
Q 011401 219 --------EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEE 284 (486)
Q Consensus 219 --------~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~ 284 (486)
..|||||||++.+| ++.+|+.|+.+.+++||+||.+.. . ..|.|+|||+|+.+ +.
T Consensus 235 f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~----~--~~G~L~fGGiD~~k-----y~ 303 (453)
T PTZ00147 235 FEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED----K--HKGYLTIGGIEERF-----YE 303 (453)
T ss_pred cccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC----C--CCeEEEECCcChhh-----cC
Confidence 47999999998654 566898888888899999997631 1 46999999999875 88
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccc
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVH 364 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~ 364 (486)
+++.|+|+.. ..+|.|.++ +.+|+... ....+||||||+++++|+++++++.+++.....
T Consensus 304 G~l~y~pl~~----~~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~--- 363 (453)
T PTZ00147 304 GPLTYEKLNH----DLYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV--- 363 (453)
T ss_pred CceEEEEcCC----CceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec---
Confidence 9999999963 358999998 57765421 135799999999999999999999888743211
Q ss_pred cccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccC
Q 011401 365 ERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELS 443 (486)
Q Consensus 365 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~ 443 (486)
+..+ .-...|+. ..+|+|+|+|+| .+++|+|++|+.+..+ .....|+ +++..+..
T Consensus 364 ~~~~-----~y~~~C~~------~~lP~~~f~f~g--~~~~L~p~~yi~~~~~-------~~~~~C~~~i~~~~~~---- 419 (453)
T PTZ00147 364 PFLP-----LYVTTCNN------TKLPTLEFRSPN--KVYTLEPEYYLQPIED-------IGSALCMLNIIPIDLE---- 419 (453)
T ss_pred CCCC-----eEEEeCCC------CCCCeEEEEECC--EEEEECHHHheecccc-------CCCcEEEEEEEECCCC----
Confidence 1000 00124654 248999999987 8999999999975321 2345798 57653221
Q ss_pred CCCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 444 GGPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 444 ~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
...||||+.|||++|+|||++++|||||+++
T Consensus 420 -~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 420 -KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred -CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 2479999999999999999999999999986
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.5e-50 Score=414.30 Aligned_cols=305 Identities=22% Similarity=0.325 Sum_probs=237.8
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
.-.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.. |. .|..+ +.|+|++|+|++..+
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP-~Q~f~vi~DTGSsdlWV~s~~--C~~~~C~~~---~~yd~s~SsT~~~~~------ 193 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDN-HQKFMLIFDTGSANLWVPSKK--CDSIGCSIK---NLYDSSKSKSYEKDG------ 193 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCC-CeEEEEEEeCCCCceEEeccc--CCccccccC---CCccCccCcccccCC------
Confidence 3445553 46689999999999 999999999999999999998 75 57644 489999999997432
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC--
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL-- 217 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~-- 217 (486)
|. |.+.||+|++.|.+++|+|+|++ ++++ ..|+++.+..
T Consensus 194 --------------------------------~~-~~i~YG~Gsv~G~~~~Dtv~iG~-----~~~~-~~f~~~~~~~~~ 234 (450)
T PTZ00013 194 --------------------------------TK-VDITYGSGTVKGFFSKDLVTLGH-----LSMP-YKFIEVTDTDDL 234 (450)
T ss_pred --------------------------------cE-EEEEECCceEEEEEEEEEEEECC-----EEEc-cEEEEEEecccc
Confidence 33 99999999999999999999998 6676 5788876542
Q ss_pred ------CCcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCC
Q 011401 218 ------GEPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEA 285 (486)
Q Consensus 218 ------~~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~ 285 (486)
..+|||||||++.+ +++.+|++|+.+..++||+||.+.. . .+|.|+|||+|+.+ +.+
T Consensus 235 ~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~----~--~~G~L~fGGiD~~~-----y~G 303 (450)
T PTZ00013 235 EPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD----V--HAGYLTIGGIEEKF-----YEG 303 (450)
T ss_pred ccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC----C--CCCEEEECCcCccc-----ccc
Confidence 14799999999765 4677899888888899999998631 1 47999999999875 889
Q ss_pred CeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccc
Q 011401 286 EFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHE 365 (486)
Q Consensus 286 ~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 365 (486)
++.|+|+.. ..+|.|.++ +.+|.... ....+||||||+++++|+++++++.+.+..... +
T Consensus 304 ~L~y~pv~~----~~yW~I~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~---~ 363 (450)
T PTZ00013 304 NITYEKLNH----DLYWQIDLD-VHFGKQTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKV---P 363 (450)
T ss_pred ceEEEEcCc----CceEEEEEE-EEECceec------------cccceEECCCCccccCCHHHHHHHHHHhCCeec---C
Confidence 999999964 358999998 66664332 134799999999999999999988887743211 0
Q ss_pred ccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCC
Q 011401 366 RASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSG 444 (486)
Q Consensus 366 ~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~ 444 (486)
.. . .....|+. ..+|+|+|+|+| .+++|+|++|+.+..+ ..+..|+ ++++... .
T Consensus 364 ~~----~-~y~~~C~~------~~lP~i~F~~~g--~~~~L~p~~Yi~~~~~-------~~~~~C~~~i~~~~~-----~ 418 (450)
T PTZ00013 364 FL----P-FYVTTCDN------KEMPTLEFKSAN--NTYTLEPEYYMNPLLD-------VDDTLCMITMLPVDI-----D 418 (450)
T ss_pred CC----C-eEEeecCC------CCCCeEEEEECC--EEEEECHHHheehhcc-------CCCCeeEEEEEECCC-----C
Confidence 00 0 01124543 248999999987 8999999999975321 2345798 6654321 1
Q ss_pred CCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 445 GPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 445 ~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
...||||++|||++|+|||++++|||||+++
T Consensus 419 ~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 419 DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2479999999999999999999999999875
No 18
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.2e-50 Score=391.79 Aligned_cols=260 Identities=44% Similarity=0.815 Sum_probs=218.2
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
+|+++|.|||| +|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP-~q~~~v~~DTGSs~~wv~~-------~----------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTP-PQPFSLIVDTGSDLTWTQC-------C----------------------------------------- 31 (265)
T ss_pred CeEEEEecCCC-CcceEEEecCCCCCEEEcC-------C-----------------------------------------
Confidence 59999999999 9999999999999999984 1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCC----CCcceeeecCC
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL----GEPIGVAGFGR 228 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~----~~~~GIlGLg~ 228 (486)
.|.+.|+||+. .|.+++|+|+|++.. ..++++.|||+.... ...+||||||+
T Consensus 32 --------------------~~~~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~ 88 (265)
T cd05476 32 --------------------SYEYSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEGGSFGGADGILGLGR 88 (265)
T ss_pred --------------------ceEeEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccCCccCCCCEEEECCC
Confidence 18899998864 999999999999821 178899999999874 25899999999
Q ss_pred CCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCceeEEeeec
Q 011401 229 GLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEG 308 (486)
Q Consensus 229 ~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~ 308 (486)
...|++.||+.++ ++||+||.+... .. ..|+|+||++|+. +.+++.|+|++.++....+|.|++++
T Consensus 89 ~~~s~~~ql~~~~----~~Fs~~l~~~~~--~~--~~G~l~fGg~d~~------~~~~l~~~p~~~~~~~~~~~~v~l~~ 154 (265)
T cd05476 89 GPLSLVSQLGSTG----NKFSYCLVPHDD--TG--GSSPLILGDAADL------GGSGVVYTPLVKNPANPTYYYVNLEG 154 (265)
T ss_pred CcccHHHHhhccc----CeeEEEccCCCC--CC--CCCeEEECCcccc------cCCCceEeecccCCCCCCceEeeeEE
Confidence 9999999999754 899999987421 11 5799999999975 57999999999765345689999999
Q ss_pred eEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccccCcccc
Q 011401 309 ISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKG 388 (486)
Q Consensus 309 I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 388 (486)
|+|+++.+.++...+.........+||||||++++||+++|
T Consensus 155 i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~--------------------------------------- 195 (265)
T cd05476 155 ISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY--------------------------------------- 195 (265)
T ss_pred EEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc---------------------------------------
Confidence 99999988765433322233467899999999999998886
Q ss_pred CCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCE
Q 011401 389 NVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGK 468 (486)
Q Consensus 389 ~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~r 468 (486)
|+|+|+|+++ .++.|++++|++.. ..+..|+++..... ...+|||+.|||++|++||++++|
T Consensus 196 --P~i~~~f~~~-~~~~i~~~~y~~~~---------~~~~~C~~~~~~~~------~~~~ilG~~fl~~~~~vFD~~~~~ 257 (265)
T cd05476 196 --PDLTLHFDGG-ADLELPPENYFVDV---------GEGVVCLAILSSSS------GGVSILGNIQQQNFLVEYDLENSR 257 (265)
T ss_pred --CCEEEEECCC-CEEEeCcccEEEEC---------CCCCEEEEEecCCC------CCcEEEChhhcccEEEEEECCCCE
Confidence 7799999855 99999999999853 34578999885422 347999999999999999999999
Q ss_pred EEEEcCCC
Q 011401 469 VGFARRQC 476 (486)
Q Consensus 469 IGfa~~~C 476 (486)
||||+++|
T Consensus 258 iGfa~~~C 265 (265)
T cd05476 258 LGFAPADC 265 (265)
T ss_pred EeeecCCC
Confidence 99999999
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-50 Score=392.98 Aligned_cols=262 Identities=29% Similarity=0.530 Sum_probs=212.8
Q ss_pred CcEEEEEEecCCCCccEEEEEEcCCCeeeeecC-CCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccc
Q 011401 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH-PFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDL 151 (486)
Q Consensus 73 ~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~-~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~ 151 (486)
++|+++|.|||| ||++.|+|||||+++||+|. + |..|
T Consensus 1 ~~Y~~~i~iGtP-~q~~~v~~DTGS~~~Wv~c~~~--c~~c--------------------------------------- 38 (273)
T cd05475 1 GYYYVTINIGNP-PKPYFLDIDTGSDLTWLQCDAP--CTGC--------------------------------------- 38 (273)
T ss_pred CceEEEEEcCCC-CeeEEEEEccCCCceEEeCCCC--CCCC---------------------------------------
Confidence 479999999999 99999999999999999984 4 5444
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCC-------Cccee
Q 011401 152 CAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG-------EPIGV 223 (486)
Q Consensus 152 c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~-------~~~GI 223 (486)
.|. |.+.|+||+ +.|.+++|+|+|+..++. ..++++.|||+....+ ..+||
T Consensus 39 -------------------~c~-~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGI 97 (273)
T cd05475 39 -------------------QCD-YEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGI 97 (273)
T ss_pred -------------------cCc-cEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEE
Confidence 133 999999775 599999999999754322 4677899999976432 47999
Q ss_pred eecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCceeE
Q 011401 224 AGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYS 303 (486)
Q Consensus 224 lGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~ 303 (486)
||||++..|+++||+.++.+ +++||+||.+. .+|.|+||+. .+ +.+++.|+|+..++ ...+|.
T Consensus 98 lGLg~~~~s~~~ql~~~~~i-~~~Fs~~l~~~--------~~g~l~~G~~--~~-----~~g~i~ytpl~~~~-~~~~y~ 160 (273)
T cd05475 98 LGLGRGKISLPSQLASQGII-KNVIGHCLSSN--------GGGFLFFGDD--LV-----PSSGVTWTPMRRES-QKKHYS 160 (273)
T ss_pred EECCCCCCCHHHHHHhcCCc-CceEEEEccCC--------CCeEEEECCC--CC-----CCCCeeecccccCC-CCCeEE
Confidence 99999999999999987666 89999999762 4699999943 21 56889999998764 236899
Q ss_pred EeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCccccc
Q 011401 304 VGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYFD 383 (486)
Q Consensus 304 v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~ 383 (486)
|++.+|+||++.+.. ....+||||||++++||+++|
T Consensus 161 v~l~~i~vg~~~~~~----------~~~~~ivDTGTt~t~lp~~~y---------------------------------- 196 (273)
T cd05475 161 PGPASLLFNGQPTGG----------KGLEVVFDSGSSYTYFNAQAY---------------------------------- 196 (273)
T ss_pred EeEeEEEECCEECcC----------CCceEEEECCCceEEcCCccc----------------------------------
Confidence 999999999984321 245899999999999999876
Q ss_pred CccccCCCeEEEEEeCC--eeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEE
Q 011401 384 QVVKGNVPTVELHFVGS--NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVV 461 (486)
Q Consensus 384 ~~~~~~~P~i~~~f~gg--~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vv 461 (486)
+|+|+|+|++. .++++|+|++|++.. ..+..|++++...+.. .+..||||+.|||++|+|
T Consensus 197 ------~p~i~~~f~~~~~~~~~~l~~~~y~~~~---------~~~~~Cl~~~~~~~~~---~~~~~ilG~~~l~~~~~v 258 (273)
T cd05475 197 ------FKPLTLKFGKGWRTRLLEIPPENYLIIS---------EKGNVCLGILNGSEIG---LGNTNIIGDISMQGLMVI 258 (273)
T ss_pred ------cccEEEEECCCCceeEEEeCCCceEEEc---------CCCCEEEEEecCCCcC---CCceEEECceEEEeeEEE
Confidence 47789999762 169999999999863 2345899888543211 135799999999999999
Q ss_pred EeCCCCEEEEEcCCC
Q 011401 462 YDLEKGKVGFARRQC 476 (486)
Q Consensus 462 fD~~~~rIGfa~~~C 476 (486)
||++++|||||+++|
T Consensus 259 fD~~~~riGfa~~~C 273 (273)
T cd05475 259 YDNEKQQIGWVRSDC 273 (273)
T ss_pred EECcCCEeCcccCCC
Confidence 999999999999999
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.9e-47 Score=375.36 Aligned_cols=279 Identities=23% Similarity=0.369 Sum_probs=226.2
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
.|+++|.|||| +|++.|+|||||+++||+ .
T Consensus 2 ~Y~~~i~iGtp-~q~~~v~~DTgS~~~wv~--~----------------------------------------------- 31 (295)
T cd05474 2 YYSAELSVGTP-PQKVTVLLDTGSSDLWVP--D----------------------------------------------- 31 (295)
T ss_pred eEEEEEEECCC-CcEEEEEEeCCCCcceee--e-----------------------------------------------
Confidence 69999999999 999999999999999997 1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCCCcceeeecCCCCC-
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGRGLL- 231 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~~~~GIlGLg~~~~- 231 (486)
|.+.|++|+ +.|.+++|+|+|++ ..++++.|||+.... ..+||||||+...
T Consensus 32 ---------------------~~~~Y~~g~~~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~-~~~GilGLg~~~~~ 84 (295)
T cd05474 32 ---------------------FSISYGDGTSASGTWGTDTVSIGG-----ATVKNLQFAVANSTS-SDVGVLGIGLPGNE 84 (295)
T ss_pred ---------------------eEEEeccCCcEEEEEEEEEEEECC-----eEecceEEEEEecCC-CCcceeeECCCCCc
Confidence 889999964 69999999999998 678899999999854 4899999999876
Q ss_pred ----------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCC--CC
Q 011401 232 ----------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPK--HP 299 (486)
Q Consensus 232 ----------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~--~~ 299 (486)
+|+.||.+|+.+.++.||+||.+.. . ..|.|+||++|+.+ +.+++.|+|+...+. ..
T Consensus 85 ~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~----~--~~g~l~~Gg~d~~~-----~~g~~~~~p~~~~~~~~~~ 153 (295)
T cd05474 85 ATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD----A--STGSILFGGVDTAK-----YSGDLVTLPIVNDNGGSEP 153 (295)
T ss_pred ccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC----C--CceeEEEeeeccce-----eeceeEEEeCcCcCCCCCc
Confidence 7899999987777899999998742 1 57999999999764 789999999997643 23
Q ss_pred ceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCc
Q 011401 300 YFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPC 379 (486)
Q Consensus 300 ~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C 379 (486)
.+|.|.+++|+|+++.+..+.. .....+||||||++++||+++|++|.+++.+.... . .......|
T Consensus 154 ~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~---~-----~~~~~~~C 219 (295)
T cd05474 154 SELSVTLSSISVNGSSGNTTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS---D-----EGLYVVDC 219 (295)
T ss_pred eEEEEEEEEEEEEcCCCccccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC---C-----CcEEEEeC
Confidence 6899999999999988653211 23568999999999999999999999998655321 0 00112245
Q ss_pred ccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhheecc
Q 011401 380 YYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQQGF 458 (486)
Q Consensus 380 ~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~~~ 458 (486)
+. ... |.|+|+|+| ++++||+++|+++.... ...+..|+ +|..... ..||||+.|||++
T Consensus 220 ~~-----~~~-p~i~f~f~g--~~~~i~~~~~~~~~~~~-----~~~~~~C~~~i~~~~~-------~~~iLG~~fl~~~ 279 (295)
T cd05474 220 DA-----KDD-GSLTFNFGG--ATISVPLSDLVLPASTD-----DGGDGACYLGIQPSTS-------DYNILGDTFLRSA 279 (295)
T ss_pred CC-----CCC-CEEEEEECC--eEEEEEHHHhEeccccC-----CCCCCCeEEEEEeCCC-------CcEEeChHHhhcE
Confidence 44 223 999999987 99999999999874310 12346785 7775432 3699999999999
Q ss_pred EEEEeCCCCEEEEEcC
Q 011401 459 EVVYDLEKGKVGFARR 474 (486)
Q Consensus 459 ~vvfD~~~~rIGfa~~ 474 (486)
|++||.+++|||||++
T Consensus 280 y~vfD~~~~~ig~a~a 295 (295)
T cd05474 280 YVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEECCCCEEEeecC
Confidence 9999999999999986
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.3e-47 Score=371.24 Aligned_cols=262 Identities=21% Similarity=0.267 Sum_probs=212.3
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccccc
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAI 154 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~ 154 (486)
|+++|.||+| +|++.|+|||||+++||+|.+ |..|..+ ..+.|++++|+|++..+
T Consensus 1 Y~~~i~vGtP-~Q~~~v~~DTGS~~~wv~~~~--c~~~~~~-~~~~y~~~~Sst~~~~~--------------------- 55 (278)
T cd06097 1 YLTPVKIGTP-PQTLNLDLDTGSSDLWVFSSE--TPAAQQG-GHKLYDPSKSSTAKLLP--------------------- 55 (278)
T ss_pred CeeeEEECCC-CcEEEEEEeCCCCceeEeeCC--CCchhhc-cCCcCCCccCccceecC---------------------
Confidence 8999999999 999999999999999999998 8777543 34579999999987432
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCC------CcceeeecC
Q 011401 155 AKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGVAGFG 227 (486)
Q Consensus 155 ~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GIlGLg 227 (486)
.|. |.+.|++|+ +.|.+++|+|+|++ .+++++.|||++...+ ..+||||||
T Consensus 56 ----------------~~~-~~i~Y~~G~~~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg 113 (278)
T cd06097 56 ----------------GAT-WSISYGDGSSASGIVYTDTVSIGG-----VEVPNQAIELATAVSASFFSDTASDGLLGLA 113 (278)
T ss_pred ----------------CcE-EEEEeCCCCeEEEEEEEEEEEECC-----EEECCeEEEEEeecCccccccccccceeeec
Confidence 234 999999998 59999999999998 7889999999987542 589999999
Q ss_pred CCCCc---------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCC
Q 011401 228 RGLLS---------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKH 298 (486)
Q Consensus 228 ~~~~S---------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~ 298 (486)
++..+ +..+|.+|+ .++.||+||.+. ..|.|+||++|+.+ +.+++.|+|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~Fs~~l~~~--------~~G~l~fGg~D~~~-----~~g~l~~~pi~~~--- 175 (278)
T cd06097 114 FSSINTVQPPKQKTFFENALSSL--DAPLFTADLRKA--------APGFYTFGYIDESK-----YKGEISWTPVDNS--- 175 (278)
T ss_pred cccccccccCCCCCHHHHHHHhc--cCceEEEEecCC--------CCcEEEEeccChHH-----cCCceEEEEccCC---
Confidence 87653 455676642 378999999752 56999999999875 8899999999864
Q ss_pred CceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCC
Q 011401 299 PYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSP 378 (486)
Q Consensus 299 ~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 378 (486)
..+|.|.+++|+||++..... ....+||||||+++++|++++++|.+++.... +.. ...
T Consensus 176 ~~~w~v~l~~i~v~~~~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---~~~---------~~~ 234 (278)
T cd06097 176 SGFWQFTSTSYTVGGDAPWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---YDS---------EYG 234 (278)
T ss_pred CcEEEEEEeeEEECCcceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc---ccC---------CCC
Confidence 258999999999998743221 24579999999999999999999988874221 100 123
Q ss_pred cccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheecc
Q 011401 379 CYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGF 458 (486)
Q Consensus 379 C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~ 458 (486)
+|.++|+.. +|+|+|+| .||||+.|||++
T Consensus 235 ~~~~~C~~~--~P~i~f~~-------------------------------------------------~~ilGd~fl~~~ 263 (278)
T cd06097 235 GWVFPCDTT--LPDLSFAV-------------------------------------------------FSILGDVFLKAQ 263 (278)
T ss_pred EEEEECCCC--CCCEEEEE-------------------------------------------------EEEEcchhhCce
Confidence 566666543 78888776 189999999999
Q ss_pred EEEEeCCCCEEEEEc
Q 011401 459 EVVYDLEKGKVGFAR 473 (486)
Q Consensus 459 ~vvfD~~~~rIGfa~ 473 (486)
|+|||++|+|||||+
T Consensus 264 y~vfD~~~~~ig~A~ 278 (278)
T cd06097 264 YVVFDVGGPKLGFAP 278 (278)
T ss_pred eEEEcCCCceeeecC
Confidence 999999999999995
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.4e-46 Score=370.32 Aligned_cols=303 Identities=24% Similarity=0.440 Sum_probs=242.2
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
+|+++|.||+| +|++.|++||||+++||++.. |..|........|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp-~q~~~~~iDTGS~~~wv~~~~--c~~~~~~~~~~~y~~~~S~t~~~~~-------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTP-PQTFRVLIDTGSSDTWVPSSN--CNSCSSCASSGFYNPSKSSTFSNQG-------------------- 57 (317)
T ss_dssp EEEEEEEETTT-TEEEEEEEETTBSSEEEEBTT--ECSHTHHCTSC-BBGGGSTTEEEEE--------------------
T ss_pred CeEEEEEECCC-CeEEEEEEecccceeeeceec--cccccccccccccccccccccccce--------------------
Confidence 59999999999 999999999999999999887 7655111134589999999987542
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------CcceeeecC
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGVAGFG 227 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GIlGLg 227 (486)
+. +.+.|++|++.|.+++|+|+|++ +.++++.||++....+ ..+||||||
T Consensus 58 ------------------~~-~~~~y~~g~~~G~~~~D~v~ig~-----~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg 113 (317)
T PF00026_consen 58 ------------------KP-FSISYGDGSVSGNLVSDTVSIGG-----LTIPNQTFGLADSYSGDPFSPIPFDGILGLG 113 (317)
T ss_dssp ------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEESHHHHHSSSSEEEE-S
T ss_pred ------------------ee-eeeeccCcccccccccceEeeee-----ccccccceecccccccccccccccccccccc
Confidence 22 89999999999999999999998 7888999999988432 589999999
Q ss_pred CC-------CCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCc
Q 011401 228 RG-------LLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPY 300 (486)
Q Consensus 228 ~~-------~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~ 300 (486)
+. ..+++.+|..++.+.+++||++|.+.. . ..|.|+||++|+.+ +.+++.|+|+.. ..
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~----~--~~g~l~~Gg~d~~~-----~~g~~~~~~~~~----~~ 178 (317)
T PF00026_consen 114 FPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD----S--QNGSLTFGGYDPSK-----YDGDLVWVPLVS----SG 178 (317)
T ss_dssp SGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT----S--SEEEEEESSEEGGG-----EESEEEEEEBSS----TT
T ss_pred CCcccccccCCcceecchhhccccccccceeeeecc----c--ccchheeecccccc-----ccCceeccCccc----cc
Confidence 74 247889999988888999999998753 1 56999999999885 789999999993 35
Q ss_pred eeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcc
Q 011401 301 FYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCY 380 (486)
Q Consensus 301 ~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~ 380 (486)
+|.|.+++|+++++...... ...++|||||++++||+++++.|++.+...... ..|
T Consensus 179 ~w~v~~~~i~i~~~~~~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~---------------~~~ 234 (317)
T PF00026_consen 179 YWSVPLDSISIGGESVFSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD---------------GVY 234 (317)
T ss_dssp TTEEEEEEEEETTEEEEEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC---------------SEE
T ss_pred cccccccccccccccccccc---------ceeeecccccccccccchhhHHHHhhhcccccc---------------eeE
Confidence 79999999999988322211 236999999999999999999999988654321 345
Q ss_pred cccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhheeccE
Q 011401 381 YFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQQGFE 459 (486)
Q Consensus 381 ~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~~~~ 459 (486)
..+|.....+|.|+|+|++ .+++|+|++|+.+..+ .....|+ +|..... . .....+|||..|||++|
T Consensus 235 ~~~c~~~~~~p~l~f~~~~--~~~~i~~~~~~~~~~~-------~~~~~C~~~i~~~~~-~--~~~~~~iLG~~fl~~~y 302 (317)
T PF00026_consen 235 SVPCNSTDSLPDLTFTFGG--VTFTIPPSDYIFKIED-------GNGGYCYLGIQPMDS-S--DDSDDWILGSPFLRNYY 302 (317)
T ss_dssp EEETTGGGGSEEEEEEETT--EEEEEEHHHHEEEESS-------TTSSEEEESEEEESS-T--TSSSEEEEEHHHHTTEE
T ss_pred EEecccccccceEEEeeCC--EEEEecchHhcccccc-------cccceeEeeeecccc-c--ccCCceEecHHHhhceE
Confidence 6666555568999999987 8999999999988543 2234887 5554111 0 12457999999999999
Q ss_pred EEEeCCCCEEEEEcC
Q 011401 460 VVYDLEKGKVGFARR 474 (486)
Q Consensus 460 vvfD~~~~rIGfa~~ 474 (486)
++||.+++|||||+|
T Consensus 303 ~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 303 VVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEeCCCCEEEEecC
Confidence 999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=7.4e-44 Score=349.90 Aligned_cols=271 Identities=30% Similarity=0.508 Sum_probs=219.4
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCC-CCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKP-APPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~-~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
|+++|.||+| +|++.|+|||||+++||+|.. |..|..+.... .|++..|+++.
T Consensus 1 Y~~~i~iGtp-~q~~~l~~DTGS~~~wv~~~~--c~~~~~~~~~~~~~~~~~s~~~~----------------------- 54 (283)
T cd05471 1 YYGEITIGTP-PQKFSVIFDTGSSLLWVPSSN--CTSCSCQKHPRFKYDSSKSSTYK----------------------- 54 (283)
T ss_pred CEEEEEECCC-CcEEEEEEeCCCCCEEEecCC--CCccccccCCCCccCccCCceee-----------------------
Confidence 7899999999 999999999999999999998 77775432211 14544444432
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC-----CcceeeecCC
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG-----EPIGVAGFGR 228 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~-----~~~GIlGLg~ 228 (486)
+..|. |.+.|++|++.|.+++|+|+|++ ..++++.|||+..... ..+||||||+
T Consensus 55 ---------------~~~~~-~~~~Y~~g~~~g~~~~D~v~~~~-----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~ 113 (283)
T cd05471 55 ---------------DTGCT-FSITYGDGSVTGGLGTDTVTIGG-----LTIPNQTFGCATSESGDFSSSGFDGILGLGF 113 (283)
T ss_pred ---------------cCCCE-EEEEECCCeEEEEEEEeEEEECC-----EEEeceEEEEEeccCCcccccccceEeecCC
Confidence 44566 99999999999999999999998 5688999999998652 5899999999
Q ss_pred CC------CchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCCCCCcee
Q 011401 229 GL------LSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFY 302 (486)
Q Consensus 229 ~~------~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y 302 (486)
.. .+++.||.+++.+.+++||+||.+.. .. ...|.|+||++|+.+ +.+++.|+|++.. ...+|
T Consensus 114 ~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~--~~--~~~g~l~~Gg~d~~~-----~~~~~~~~p~~~~--~~~~~ 182 (283)
T cd05471 114 PSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDG--DG--GNGGELTFGGIDPSK-----YTGDLTYTPVVSN--GPGYW 182 (283)
T ss_pred cccccccCCCHHHHHHHCCCCCCCEEEEEEcCCC--CC--CCCCEEEEcccCccc-----cCCceEEEecCCC--CCCEE
Confidence 88 78999999988888999999998742 11 167999999999874 7899999999975 23689
Q ss_pred EEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCCCCcccc
Q 011401 303 SVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGLSPCYYF 382 (486)
Q Consensus 303 ~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~ 382 (486)
.|.+++|+|+++..... .....+||||||++++||+++|++|.+++...... ...|+..
T Consensus 183 ~v~l~~i~v~~~~~~~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~-------------~~~~~~~ 241 (283)
T cd05471 183 QVPLDGISVGGKSVISS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS-------------SDGGYGV 241 (283)
T ss_pred EEEeCeEEECCceeeec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc-------------cCCcEEE
Confidence 99999999998741111 13468999999999999999999999999766431 1234454
Q ss_pred cCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhheeccEEEE
Q 011401 383 DQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQQGFEVVY 462 (486)
Q Consensus 383 ~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvf 462 (486)
.+.....+|.|+|+| .+|||+.|||++|++|
T Consensus 242 ~~~~~~~~p~i~f~f-------------------------------------------------~~ilG~~fl~~~y~vf 272 (283)
T cd05471 242 DCSPCDTLPDITFTF-------------------------------------------------LWILGDVFLRNYYTVF 272 (283)
T ss_pred eCcccCcCCCEEEEE-------------------------------------------------EEEccHhhhhheEEEE
Confidence 444444589999988 1699999999999999
Q ss_pred eCCCCEEEEEc
Q 011401 463 DLEKGKVGFAR 473 (486)
Q Consensus 463 D~~~~rIGfa~ 473 (486)
|++++|||||+
T Consensus 273 D~~~~~igfa~ 283 (283)
T cd05471 273 DLDNNRIGFAP 283 (283)
T ss_pred eCCCCEEeecC
Confidence 99999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=3.7e-31 Score=238.15 Aligned_cols=160 Identities=44% Similarity=0.713 Sum_probs=126.4
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcccccc
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCAI 154 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~ 154 (486)
|+++|.|||| +|++.|+|||||+++|++|. .|.|+|++|+||+.++|.++.|.......
T Consensus 1 Y~~~~~iGtP-~~~~~lvvDtgs~l~W~~C~------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~-------- 59 (164)
T PF14543_consen 1 YYVSVSIGTP-PQPFSLVVDTGSDLTWVQCP------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFC-------- 59 (164)
T ss_dssp EEEEEECTCT-TEEEEEEEETT-SSEEEET----------------STT-TTSSBEC-BTTSHHHHHCTSSB--------
T ss_pred CEEEEEeCCC-CceEEEEEECCCCceEEcCC------------CcccCCccCCcccccCCCCcchhhccccc--------
Confidence 8999999999 99999999999999999972 36899999999999999999998775420
Q ss_pred cCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCC---CcceeeecCCCC
Q 011401 155 AKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---EPIGVAGFGRGL 230 (486)
Q Consensus 155 ~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---~~~GIlGLg~~~ 230 (486)
....|.+..|. |.+.|++|+. .|.+++|+|+++...+....++++.|||++...+ .++||||||+++
T Consensus 60 --------~~~~~~~~~C~-y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~ 130 (164)
T PF14543_consen 60 --------PCCCCSNNSCP-YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGP 130 (164)
T ss_dssp --------TCCTCESSEEE-EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSST
T ss_pred --------ccCCCCcCccc-ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCc
Confidence 01223478899 9999999986 8999999999998765456788999999998765 589999999999
Q ss_pred CchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecc
Q 011401 231 LSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGR 272 (486)
Q Consensus 231 ~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~ 272 (486)
+||++||+.+ ..++|||||.+.. .. ..|+|+||+
T Consensus 131 ~Sl~sQl~~~---~~~~FSyCL~~~~---~~--~~g~l~fG~ 164 (164)
T PF14543_consen 131 LSLPSQLASS---SGNKFSYCLPSSS---PS--SSGFLSFGD 164 (164)
T ss_dssp TSHHHHHHHH-----SEEEEEB-S-S---SS--SEEEEEECS
T ss_pred ccHHHHHHHh---cCCeEEEECCCCC---CC--CCEEEEeCc
Confidence 9999999763 6699999999821 11 679999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=9.7e-28 Score=215.67 Aligned_cols=156 Identities=37% Similarity=0.737 Sum_probs=120.5
Q ss_pred eeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcc-ccccccccccCCCCCc
Q 011401 301 FYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV-HERASQIEEKTGLSPC 379 (486)
Q Consensus 301 ~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~C 379 (486)
+|+|+|++|+||++++++++..|.. .++.+++||||||++|+||+++|++|+++|.+++... +.+ .......++.|
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~--~~~~~~~~~~C 77 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSR--EAPPFSGFDLC 77 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--C--EE---TT-S-E
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhccccc--ccccCCCCCce
Confidence 5999999999999999999988877 7788999999999999999999999999999998762 122 12234567899
Q ss_pred ccccC----ccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCceeechhhe
Q 011401 380 YYFDQ----VVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGATLGNYQQ 455 (486)
Q Consensus 380 ~~~~~----~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ILG~~fl 455 (486)
|+.+. .....+|+|+|+|.|| ++|+|++++|++.. .++..|++|.+.... ....+|||+.+|
T Consensus 78 y~~~~~~~~~~~~~~P~i~l~F~~g-a~l~l~~~~y~~~~---------~~~~~Cla~~~~~~~----~~~~~viG~~~~ 143 (161)
T PF14541_consen 78 YNLSSFGVNRDWAKFPTITLHFEGG-ADLTLPPENYFVQV---------SPGVFCLAFVPSDAD----DDGVSVIGNFQQ 143 (161)
T ss_dssp EEGGCS-EETTEESS--EEEEETTS-EEEEE-HHHHEEEE---------CTTEEEESEEEETST----TSSSEEE-HHHC
T ss_pred eeccccccccccccCCeEEEEEeCC-cceeeeccceeeec---------cCCCEEEEEEccCCC----CCCcEEECHHHh
Confidence 99887 2445799999999987 99999999999984 356899999966111 135799999999
Q ss_pred eccEEEEeCCCCEEEEEc
Q 011401 456 QGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 456 ~~~~vvfD~~~~rIGfa~ 473 (486)
++++++||++++||||+|
T Consensus 144 ~~~~v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 144 QNYHVVFDLENGRIGFAP 161 (161)
T ss_dssp CTEEEEEETTTTEEEEEE
T ss_pred cCcEEEEECCCCEEEEeC
Confidence 999999999999999986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=6e-22 Score=166.13 Aligned_cols=102 Identities=28% Similarity=0.488 Sum_probs=86.2
Q ss_pred EEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCC-CCCCCCCcccccCCCcccccccCCCCCccccccc
Q 011401 77 LSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAP-PLNISSTATKVSCKSPACSAAHSSLPTSDLCAIA 155 (486)
Q Consensus 77 ~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f-~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~~~ 155 (486)
++|.||+| +|++.|+|||||+++||+|.+ |..|..+. .+.| +|+.|+|++..
T Consensus 1 ~~i~vGtP-~q~~~~~~DTGSs~~Wv~~~~--c~~~~~~~-~~~~~~~~~sst~~~~----------------------- 53 (109)
T cd05470 1 IEIGIGTP-PQTFNVLLDTGSSNLWVPSVD--CQSLAIYS-HSSYDDPSASSTYSDN----------------------- 53 (109)
T ss_pred CEEEeCCC-CceEEEEEeCCCCCEEEeCCC--CCCccccc-ccccCCcCCCCCCCCC-----------------------
Confidence 47999999 999999999999999999998 76665433 3355 99999988743
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccceeeec
Q 011401 156 KCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIGVAGF 226 (486)
Q Consensus 156 ~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~GIlGL 226 (486)
.|. |.+.|++|++.|.+++|+|+|++ ..++++.|||+....+ ..+|||||
T Consensus 54 ---------------~~~-~~~~Y~~g~~~g~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 54 ---------------GCT-FSITYGTGSLSGGLSTDTVSIGD-----IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred ---------------CcE-EEEEeCCCeEEEEEEEEEEEECC-----EEECCEEEEEEEecCCccccccccccccCC
Confidence 244 99999999989999999999988 6789999999998743 47999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.85 E-value=6.1e-05 Score=60.72 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=63.7
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCccccc
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSDLCA 153 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~~c~ 153 (486)
.|++++.|+. +++.+++|||++.+|+...- ...+.. ...
T Consensus 2 ~~~v~v~i~~---~~~~~llDTGa~~s~i~~~~--~~~l~~-------------~~~----------------------- 40 (96)
T cd05483 2 HFVVPVTING---QPVRFLLDTGASTTVISEEL--AERLGL-------------PLT----------------------- 40 (96)
T ss_pred cEEEEEEECC---EEEEEEEECCCCcEEcCHHH--HHHcCC-------------Ccc-----------------------
Confidence 5899999996 89999999999999997542 111110 000
Q ss_pred ccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCCCcceeeecCC
Q 011401 154 IAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGR 228 (486)
Q Consensus 154 ~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~~~~GIlGLg~ 228 (486)
... +..+..++|.. ......+.+++++ ..++++.+..........+||||+.+
T Consensus 41 ----------------~~~-~~~~~~~~G~~~~~~~~~~~i~ig~-----~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 41 ----------------LGG-KVTVQTANGRVRAARVRLDSLQIGG-----ITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred ----------------CCC-cEEEEecCCCccceEEEcceEEECC-----cEEeccEEEEeCCcccCCceEeChHH
Confidence 000 16677788875 5555688999998 67777777766554324799999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.67 E-value=0.0087 Score=50.77 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCc
Q 011401 70 SPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTS 149 (486)
Q Consensus 70 ~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~ 149 (486)
..++.|++++.|.. +++.+++|||++.+-+...- -...+ .++..
T Consensus 7 ~~~g~~~v~~~InG---~~~~flVDTGAs~t~is~~~--A~~Lg-------l~~~~------------------------ 50 (121)
T TIGR02281 7 DGDGHFYATGRVNG---RNVRFLVDTGATSVALNEED--AQRLG-------LDLNR------------------------ 50 (121)
T ss_pred cCCCeEEEEEEECC---EEEEEEEECCCCcEEcCHHH--HHHcC-------CCccc------------------------
Confidence 36788999999977 69999999999998886542 01110 00000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCCCcceeeecCC
Q 011401 150 DLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFGR 228 (486)
Q Consensus 150 ~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~~~~GIlGLg~ 228 (486)
.. .+..+.=+.|.. .....-|.+++|+ ..+.++.+.+...... .+|+||+.+
T Consensus 51 --------------------~~-~~~~~~ta~G~~~~~~~~l~~l~iG~-----~~~~nv~~~v~~~~~~-~~~LLGm~f 103 (121)
T TIGR02281 51 --------------------LG-YTVTVSTANGQIKAARVTLDRVAIGG-----IVVNDVDAMVAEGGAL-SESLLGMSF 103 (121)
T ss_pred --------------------CC-ceEEEEeCCCcEEEEEEEeCEEEECC-----EEEeCcEEEEeCCCcC-CceEcCHHH
Confidence 00 013344456665 4556889999999 7888888877754322 489999863
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.26 E-value=0.13 Score=40.36 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=29.3
Q ss_pred eeeCCcee-EeEEEEEEEEeccCCCCceeecceEEeceecCCCCcceeeecC
Q 011401 177 YAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLGEPIGVAGFG 227 (486)
Q Consensus 177 ~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~~~~GIlGLg 227 (486)
+.-.+|.. .....-+.+++++ ..+.++.|-.... ....+||||+-
T Consensus 44 ~~~~~g~~~~~~~~~~~i~ig~-----~~~~~~~~~v~~~-~~~~~~iLG~d 89 (90)
T PF13650_consen 44 VSGAGGSVTVYRGRVDSITIGG-----ITLKNVPFLVVDL-GDPIDGILGMD 89 (90)
T ss_pred EEeCCCCEEEEEEEEEEEEECC-----EEEEeEEEEEECC-CCCCEEEeCCc
Confidence 33344544 4455666899988 6777777766652 23579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.32 E-value=0.6 Score=39.65 Aligned_cols=31 Identities=16% Similarity=0.401 Sum_probs=26.7
Q ss_pred CCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 72 GSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 72 ~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
...+++++.|+. +++.+++|||++..++.-.
T Consensus 14 ~~~~~v~~~Ing---~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEING---VPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEECC---EEEEEEEeCCCceEEeCHH
Confidence 346899999998 7899999999999998754
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=90.48 E-value=1.3 Score=37.57 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=22.6
Q ss_pred ceeechhheeccEEEEeCCCCEEEE
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGF 471 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGf 471 (486)
..|||..||+.+-.+.|+.+.+|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999998853
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.19 E-value=0.31 Score=38.85 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
|++++.|+. +++.+++||||+..++.-+
T Consensus 1 ~~~~~~Ing---~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVNG---KPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEECC---EEEEEEEcCCcceEEeCHH
Confidence 578899998 7999999999999999754
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=87.21 E-value=3 Score=36.02 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.6
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~ 474 (486)
-.|||..+|+.+..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 3899999999999999999999999753
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=84.56 E-value=1.1 Score=34.96 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=18.7
Q ss_pred ceEEccCCcceecCHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l 352 (486)
.++||||++.+.+.+++++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 489999999999999988765
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.71 E-value=2.3 Score=35.97 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=26.8
Q ss_pred ceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHH
Q 011401 300 YFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 300 ~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l 352 (486)
+.|++. +.|+|+.+ .++||||.+.+.+++++.+++
T Consensus 10 g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 456555 56777744 489999999999999987654
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.06 E-value=2.1 Score=32.44 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCC
Q 011401 72 GSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 72 ~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
.+.+++.+.||. +.+.+++|||++...++.+-
T Consensus 6 ~g~~~v~~~I~g---~~~~alvDtGat~~fis~~~ 37 (72)
T PF13975_consen 6 PGLMYVPVSIGG---VQVKALVDTGATHNFISESL 37 (72)
T ss_pred CCEEEEEEEECC---EEEEEEEeCCCcceecCHHH
Confidence 467999999999 78899999999999887654
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.16 E-value=1.9 Score=34.22 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=24.5
Q ss_pred eEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHH
Q 011401 309 ISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 309 I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l 352 (486)
+.|+|+.+. +.||||++.+.++++.+..+
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 677787663 89999999999999998765
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=80.99 E-value=6.7 Score=36.02 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 70 SPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 70 ~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..++.|.++..|-. |++..++|||-+.+-+.-.
T Consensus 101 ~~~GHF~a~~~VNG---k~v~fLVDTGATsVal~~~ 133 (215)
T COG3577 101 SRDGHFEANGRVNG---KKVDFLVDTGATSVALNEE 133 (215)
T ss_pred cCCCcEEEEEEECC---EEEEEEEecCcceeecCHH
Confidence 35788999999988 8999999999999888754
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=80.90 E-value=7.3 Score=32.06 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.3
Q ss_pred ceeechhheeccEEEEeCCCCEE
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKV 469 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rI 469 (486)
..+||..||+.+-++.|..++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999987753
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.72 E-value=2.5 Score=32.01 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.0
Q ss_pred ceEEccCCcceecCHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l 352 (486)
.++||||++-++++.++.+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 489999999999999998766
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.67 E-value=2.8 Score=33.66 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=23.2
Q ss_pred EEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 76 TLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 76 ~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
+++|.|.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g---~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING---KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT---EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC---EEEEEEEecCCCcceeccc
Confidence 67888888 7999999999999888754
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=75.80 E-value=3.8 Score=32.25 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.2
Q ss_pred ceEEccCCcceecCHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l 352 (486)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 489999999999999876655
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.56 E-value=4.5 Score=31.73 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.6
Q ss_pred ceEEccCCcceecCHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l 352 (486)
.++||||.+.+.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 489999999999999988765
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=63.25 E-value=4.7 Score=32.34 Aligned_cols=17 Identities=12% Similarity=0.366 Sum_probs=15.2
Q ss_pred ceEEccCCcceecCHHH
Q 011401 332 GMVVDSGTTFTMLPASL 348 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~ 348 (486)
.++||||+..+.++++.
T Consensus 18 ~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 18 KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTBSSEEESSGG
T ss_pred EEEEecCCCcceecccc
Confidence 49999999999999765
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=60.68 E-value=9.3 Score=29.89 Aligned_cols=25 Identities=24% Similarity=0.500 Sum_probs=20.1
Q ss_pred EEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 78 SFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 78 ~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG---~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG---VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC---EEEEEEEECCCCeEEECHH
Confidence 345555 7999999999999999754
No 46
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=59.84 E-value=10 Score=30.03 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 78 SFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 78 ~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.+.|+. |.+.+++|||.+++-+.-.
T Consensus 2 ~~~i~g---~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYING---KLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEECC---EEEEEEEccCCCCeEEccc
Confidence 456666 8999999999999998754
No 47
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.06 E-value=8.6 Score=30.96 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=4.8
Q ss_pred CCCchhHH
Q 011401 1 MAPSLSIY 8 (486)
Q Consensus 1 m~~~~~~~ 8 (486)
|+|+.++|
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 89764333
No 48
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=56.36 E-value=11 Score=30.02 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.1
Q ss_pred ceEEccCCcceecCHHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKVV 353 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l~ 353 (486)
.+.||||++.+.+|...|+.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 5899999999999998887653
No 49
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=47.06 E-value=32 Score=31.72 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred ceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHH
Q 011401 300 YFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 300 ~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l 352 (486)
++|+++ ..|||+.+. .+||||.|...++++..+.+
T Consensus 104 GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 104 GHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 456665 688888774 89999999999999885533
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=45.23 E-value=25 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 76 TLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 76 ~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
...+.++.- ..++.++|||||...++..+
T Consensus 34 T~~v~l~~~-~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCK-GTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeec-CcEEEEEEeCCCccceeehh
Confidence 334444443 47899999999999888754
No 51
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=41.97 E-value=39 Score=31.19 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~ 474 (486)
..|||+.|+|.|.=....+ ++|-|...
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 4899999999887666665 57887653
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.91 E-value=19 Score=30.34 Aligned_cols=20 Identities=35% Similarity=0.695 Sum_probs=17.9
Q ss_pred eEEccCCc-ceecCHHHHHHH
Q 011401 333 MVVDSGTT-FTMLPASLYEKV 352 (486)
Q Consensus 333 ~iiDSGTt-~t~lp~~~y~~l 352 (486)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998865
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.15 E-value=24 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.3
Q ss_pred eEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHH
Q 011401 309 ISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 309 I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l 352 (486)
++++|+.+ .|+||||+-.+.++.+..+++
T Consensus 29 ~~ing~~v---------------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV---------------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE---------------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE---------------EEEEeCCCCccccCHHHHHHc
Confidence 67777766 399999999999999987763
No 54
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=36.36 E-value=42 Score=33.24 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=27.2
Q ss_pred cccCCCCCcEEEE---EEecCCC----CccEEEEEEcCCCeeeeecC
Q 011401 66 SLPLSPGSDYTLS---FSLGGSA----SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 66 ~~p~~~~~~Y~~~---i~iGtP~----~q~~~v~iDTGS~~~Wv~~~ 105 (486)
-+|+....+|.++ |.||... .+...++||||++++++|-.
T Consensus 181 ~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 181 YVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred EEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 3455555567665 5787620 23467999999999999854
No 55
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=36.23 E-value=23 Score=30.00 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.1
Q ss_pred CcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccC
Q 011401 73 SDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCEN 114 (486)
Q Consensus 73 ~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~ 114 (486)
..+|+++.|+. +++.+.+|||...+-+...- +..|+.
T Consensus 23 ~mLyI~~~ing---~~vkA~VDtGAQ~tims~~~--a~r~gL 59 (124)
T PF09668_consen 23 SMLYINCKING---VPVKAFVDTGAQSTIMSKSC--AERCGL 59 (124)
T ss_dssp ---EEEEEETT---EEEEEEEETT-SS-EEEHHH--HHHTTG
T ss_pred ceEEEEEEECC---EEEEEEEeCCCCccccCHHH--HHHcCC
Confidence 36899999999 89999999999998887552 356653
No 56
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=33.41 E-value=53 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEecCCCCc----cEEEEEEcCCCeee-ee
Q 011401 77 LSFSLGGSASS----PVSLYLDTGSDLVW-LP 103 (486)
Q Consensus 77 ~~i~iGtP~~q----~~~v~iDTGS~~~W-v~ 103 (486)
++|.|..| .| ++.+++|||-+..- ++
T Consensus 2 ~~v~~~~p-~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNP-KNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCC-CCCCceEEEEEEECCCCeEEecC
Confidence 67888887 33 47889999998654 44
No 57
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=29.31 E-value=77 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.389 Sum_probs=27.3
Q ss_pred cccCCCC---CcEEEE---EEecCC--CCccEEEEEEcCCCeeeeecCC
Q 011401 66 SLPLSPG---SDYTLS---FSLGGS--ASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 66 ~~p~~~~---~~Y~~~---i~iGtP--~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
-.|+... ..|.++ |.||.- ......++||||++++.+|...
T Consensus 147 ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~ 195 (273)
T cd05475 147 WTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQA 195 (273)
T ss_pred ecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCcc
Confidence 3455532 567765 588751 0234679999999999998653
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=28.54 E-value=86 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.5
Q ss_pred ceEEccCCcceecCHHHHHHH
Q 011401 332 GMVVDSGTTFTMLPASLYEKV 352 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~~y~~l 352 (486)
.+++|||+..+++-+++.+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 599999999999999887765
No 59
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=28.16 E-value=55 Score=32.54 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=27.1
Q ss_pred cccCCCCCcEEEE---EEecCCC-----CccEEEEEEcCCCeeeeecC
Q 011401 66 SLPLSPGSDYTLS---FSLGGSA-----SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 66 ~~p~~~~~~Y~~~---i~iGtP~-----~q~~~v~iDTGS~~~Wv~~~ 105 (486)
-.|+.....|.++ |.||... .....+++|||+++++++..
T Consensus 201 ~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 201 WTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred EEeccCCceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 3455545567665 5777630 13456899999999999864
No 60
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=25.96 E-value=57 Score=32.23 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=27.5
Q ss_pred ccccCCCCCcEEEE---EEecCCC---CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGSA---SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP~---~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.-+|+....+|.++ |.||.-. +....++||||++++++|-.
T Consensus 169 ~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 169 NWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred EEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 33466555667664 6787620 12357999999999999854
No 61
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=25.12 E-value=80 Score=30.13 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=29.4
Q ss_pred cccccCCC--CCcEEEE---EEecC----CCCccEEEEEEcCCCeeeeecCC
Q 011401 64 QVSLPLSP--GSDYTLS---FSLGG----SASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 64 ~~~~p~~~--~~~Y~~~---i~iGt----P~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
....|+.. ...|.+. |.||. +......++||||++.+|++..-
T Consensus 169 ~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 169 LTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred eEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 34456654 5567665 46775 11356899999999999998653
No 62
>PF15409 PH_8: Pleckstrin homology domain
Probab=23.11 E-value=2.3e+02 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCceEEccCCcceec---CHHHHHHHHHHHHH
Q 011401 330 YGGMVVDSGTTFTML---PASLYEKVVAEFDR 358 (486)
Q Consensus 330 ~~~~iiDSGTt~t~l---p~~~y~~l~~~i~~ 358 (486)
...+.||||...-+| .+..|+.++++|..
T Consensus 56 ~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 56 SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 357899999997766 67788888888864
No 63
>PTZ00147 plasmepsin-1; Provisional
Probab=23.00 E-value=73 Score=33.50 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=26.8
Q ss_pred cccCCCCCcEEEEEE--ecCCCCccEEEEEEcCCCeeeeecC
Q 011401 66 SLPLSPGSDYTLSFS--LGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 66 ~~p~~~~~~Y~~~i~--iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
-.|+.....|.+++. +|.-......+++|||++++++|-.
T Consensus 308 y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~ 349 (453)
T PTZ00147 308 YEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTE 349 (453)
T ss_pred EEEcCCCceEEEEEEEEECCEecCceeEEECCCCchhcCCHH
Confidence 345555556766665 4542124578999999999999854
No 64
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.59 E-value=90 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=9.0
Q ss_pred CCCchhHHHHHHHHHHHhh
Q 011401 1 MAPSLSIYHLVILLSALAS 19 (486)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (486)
||+++.++.|+-+.|.+++
T Consensus 1 MA~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIV 19 (65)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 8886544433333333333
No 65
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=21.92 E-value=98 Score=30.79 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=27.8
Q ss_pred ccccCCCCCcEEEE---EEecCCC--CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGSA--SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP~--~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+.....|.++ +.||.-. .+...++||||++.+++|-.
T Consensus 182 ~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 182 TYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred EEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHH
Confidence 44566555667765 4677520 13457999999999999854
No 66
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=21.41 E-value=80 Score=33.20 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=26.1
Q ss_pred cccCCCCCcEEEEEE--ecCCCCccEEEEEEcCCCeeeeecC
Q 011401 66 SLPLSPGSDYTLSFS--LGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 66 ~~p~~~~~~Y~~~i~--iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
-.|+....+|.+++. +|....+...+++|||++++++|-.
T Consensus 307 y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDSGTSli~lP~~ 348 (450)
T PTZ00013 307 YEKLNHDLYWQIDLDVHFGKQTMQKANVIVDSGTTTITAPSE 348 (450)
T ss_pred EEEcCcCceEEEEEEEEECceeccccceEECCCCccccCCHH
Confidence 345544556666665 3432124567999999999999854
No 67
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=21.22 E-value=1.1e+02 Score=29.37 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.1
Q ss_pred cEEEEEEcCCCeeeeecC
Q 011401 88 PVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 88 ~~~v~iDTGS~~~Wv~~~ 105 (486)
...++||||++++.++..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999854
Done!