Query 011401
Match_columns 486
No_of_seqs 262 out of 1556
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 3.3E-62 1.1E-66 502.6 29.1 365 63-479 7-409 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 3.1E-58 1.1E-62 473.1 28.6 357 64-481 9-399 (403)
3 2x0b_A Renin; hydrolase-hormon 100.0 3E-58 1E-62 468.4 23.9 315 64-475 50-383 (383)
4 3psg_A Pepsinogen; hydrolase(a 100.0 1.3E-57 4.5E-62 462.6 27.5 309 64-475 45-370 (370)
5 1tzs_A Cathepsin E; hydrolase, 100.0 7.8E-57 2.7E-61 454.5 28.1 322 65-485 13-351 (351)
6 3cms_A Chymosin B; hydrolase, 100.0 1.9E-56 6.5E-61 446.7 23.9 302 66-475 5-323 (323)
7 1mpp_A Pepsin; hydrolase(acid 100.0 8.7E-57 3E-61 456.1 20.8 317 63-479 6-359 (361)
8 1dpj_A Proteinase A; proteinas 100.0 1.1E-55 3.9E-60 442.3 26.4 308 67-475 5-329 (329)
9 4aa9_A Chymosin; hydrolase, as 100.0 5.4E-56 1.9E-60 443.0 23.3 301 67-475 3-320 (320)
10 1j71_A Candidapepsin, aspartic 100.0 6.4E-56 2.2E-60 445.0 21.2 303 65-478 3-327 (334)
11 1am5_A Pepsin, acid proteinase 100.0 3E-55 1E-59 438.3 24.8 305 66-475 3-324 (324)
12 2qzx_A Candidapepsin-5; aspart 100.0 1.3E-55 4.6E-60 444.1 22.3 312 65-479 3-335 (342)
13 1qdm_A Prophytepsin; aspartic 100.0 6.3E-55 2.2E-59 455.6 27.6 329 64-474 41-477 (478)
14 3c9x_A Trichoderma reesei aspa 100.0 1.1E-54 3.8E-59 435.0 27.9 303 68-474 10-329 (329)
15 3k1w_A Renin; protease, altern 100.0 2.7E-55 9.2E-60 441.8 23.0 316 63-475 6-340 (341)
16 3fv3_A SAPP1P-secreted asparti 100.0 3.5E-55 1.2E-59 440.6 23.0 307 64-478 2-332 (339)
17 1oew_A Endothiapepsin; hydrola 100.0 7.6E-55 2.6E-59 436.2 25.1 302 68-474 10-329 (329)
18 1htr_B Gastricsin; aspartyl pr 100.0 6.4E-55 2.2E-59 436.9 24.4 304 71-475 10-329 (329)
19 2apr_A Rhizopuspepsin; hydrola 100.0 1.4E-54 4.7E-59 433.5 24.7 300 69-475 11-324 (325)
20 3pvk_A Candidapepsin-2; hydrol 100.0 6.8E-55 2.3E-59 439.1 21.0 313 65-478 3-334 (342)
21 1t6e_X Xylanase inhibitor; two 100.0 6.2E-54 2.1E-58 438.0 26.7 347 65-475 3-373 (381)
22 3lpj_A Beta-secretase 1; alzhe 100.0 9.5E-54 3.2E-58 446.4 25.5 332 71-480 72-425 (455)
23 1miq_A Plasmepsin; aspartic pr 100.0 5.1E-54 1.7E-58 437.0 22.4 305 64-475 51-374 (375)
24 2ewy_A Beta-secretase 2; BACE2 100.0 7.4E-54 2.5E-58 438.0 23.6 327 71-479 11-359 (383)
25 1yg9_A Aspartic protease BLA G 100.0 1E-53 3.6E-58 428.0 22.6 306 64-475 6-329 (330)
26 2bju_A Plasmepsin II; aspartic 100.0 8.3E-54 2.8E-58 442.8 20.7 304 65-475 128-450 (453)
27 1ibq_A Aspergillopepsin; aspar 100.0 7.3E-53 2.5E-57 421.1 26.6 304 64-475 5-325 (325)
28 2qp8_A Beta-secretase 1; BACE1 100.0 3.8E-53 1.3E-57 434.4 24.8 329 71-480 19-372 (395)
29 1wkr_A Polyporopepsin; hydrola 100.0 6E-53 2.1E-57 424.4 23.8 313 67-478 5-336 (340)
30 3qvc_A Histo-aspartic protease 100.0 3.4E-53 1.2E-57 438.7 22.2 305 64-475 126-449 (451)
31 3vf3_A Beta-secretase 1; struc 100.0 1.1E-52 3.8E-57 432.0 25.9 332 71-481 26-380 (402)
32 1izd_A Aspartic proteinase; su 100.0 1.2E-52 4.2E-57 418.9 23.3 300 65-475 7-323 (323)
33 1bxo_A Protein (penicillopepsi 100.0 1.7E-52 5.8E-57 418.1 21.2 301 64-475 6-323 (323)
34 1b5f_A Protein (cardosin A); h 100.0 2.6E-42 8.9E-47 329.5 16.5 220 67-357 5-237 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 9.7E-37 3.3E-41 291.5 18.2 226 203-475 3-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 7E-22 2.4E-26 160.2 8.0 87 66-197 4-96 (97)
37 1b5f_B Protein (cardosin A); h 99.6 3.7E-16 1.3E-20 124.1 7.2 81 383-475 6-87 (87)
38 2i1a_A DNA damage-inducible pr 92.1 0.24 8.3E-06 42.1 6.1 32 71-105 23-54 (148)
39 1fmb_A EIAV protease; hydrolas 76.0 2.1 7.4E-05 33.9 3.5 27 75-104 9-35 (104)
40 2hs1_A HIV-1 protease; ultra-h 74.7 2.5 8.6E-05 33.2 3.5 27 76-105 10-36 (99)
41 3ec0_A Protease; HIV-2, inhibi 66.7 4.5 0.00016 31.7 3.4 27 76-105 10-36 (99)
42 3s8i_A Protein DDI1 homolog 1; 66.0 4.7 0.00016 34.1 3.6 32 71-105 21-52 (148)
43 2i1a_A DNA damage-inducible pr 65.1 4.1 0.00014 34.2 3.2 27 447-473 109-135 (148)
44 2hah_A Protease, retropepsin; 60.5 6.4 0.00022 31.8 3.3 27 75-105 15-41 (116)
45 3liy_A Protease; hydrolase, hy 60.4 6.8 0.00023 31.4 3.3 30 76-106 12-44 (116)
46 3s8i_A Protein DDI1 homolog 1; 60.2 4.8 0.00016 34.1 2.6 28 447-474 108-135 (148)
47 3sqf_A Protease; folded monome 51.9 12 0.00042 30.0 3.5 28 76-106 11-38 (114)
48 3slz_A GAG-Pro-POL polyprotein 42.0 19 0.00065 29.7 3.4 29 74-105 22-50 (132)
49 1lya_B Cathepsin D; lysosomal 41.9 22 0.00076 32.1 4.2 41 65-105 91-137 (241)
50 1b5f_A Protein (cardosin A); h 40.1 17 0.0006 33.0 3.2 40 66-105 181-227 (239)
51 3ka2_A [L-Ala51;Gly51']HIV-1 p 35.8 25 0.00087 31.2 3.4 27 75-104 9-35 (203)
52 1lya_A Cathepsin D; lysosomal 35.0 22 0.00077 27.3 2.6 16 332-347 29-44 (97)
53 1bxo_A Protein (penicillopepsi 34.6 28 0.00095 33.1 3.8 42 285-348 4-45 (323)
54 1ibq_A Aspergillopepsin; aspar 34.5 31 0.0011 32.8 4.2 42 285-348 3-44 (325)
55 2rsp_A RSV protease; hydrolase 33.5 27 0.00091 28.5 2.9 20 87-106 30-49 (124)
56 1yg9_A Aspartic protease BLA G 32.8 28 0.00096 33.2 3.5 41 65-105 185-230 (330)
57 1izd_A Aspartic proteinase; su 32.0 33 0.0011 32.7 3.8 42 285-348 4-45 (323)
58 3c9x_A Trichoderma reesei aspa 30.6 43 0.0015 31.9 4.4 41 65-105 184-230 (329)
59 1mpp_A Pepsin; hydrolase(acid 30.2 40 0.0014 32.5 4.2 46 284-347 4-49 (361)
60 2x0b_A Renin; hydrolase-hormon 29.8 44 0.0015 32.8 4.4 41 65-105 234-280 (383)
61 3cms_A Chymosin B; hydrolase, 29.3 43 0.0015 31.8 4.1 41 65-105 181-227 (323)
62 1htr_B Gastricsin; aspartyl pr 28.5 50 0.0017 31.3 4.5 42 65-106 181-229 (329)
63 4aa9_A Chymosin; hydrolase, as 27.0 53 0.0018 31.0 4.3 41 65-105 178-224 (320)
64 1miq_A Plasmepsin; aspartic pr 25.9 39 0.0013 32.9 3.2 40 65-105 231-273 (375)
65 1tzs_A Cathepsin E; hydrolase, 25.6 38 0.0013 32.6 3.0 41 65-105 193-239 (351)
66 1qdm_A Prophytepsin; aspartic 24.8 41 0.0014 34.2 3.2 39 67-105 225-270 (478)
67 3psg_A Pepsinogen; hydrolase(a 23.2 57 0.0019 31.7 3.8 41 65-105 224-270 (370)
68 1dpj_A Proteinase A; proteinas 23.2 51 0.0018 31.2 3.4 41 65-105 184-229 (329)
69 1oew_A Endothiapepsin; hydrola 22.5 66 0.0023 30.5 4.1 16 332-347 31-46 (329)
70 3aup_A SBG7S, BG, basic 7S glo 20.6 44 0.0015 32.8 2.4 41 65-105 218-276 (403)
71 3slz_A GAG-Pro-POL polyprotein 20.3 52 0.0018 27.0 2.3 26 307-347 25-50 (132)
72 3vla_A EDGP; extracellular, in 20.2 76 0.0026 31.4 4.0 46 285-347 6-51 (413)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=3.3e-62 Score=502.60 Aligned_cols=365 Identities=23% Similarity=0.442 Sum_probs=286.6
Q ss_pred CcccccCC---CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 63 QQVSLPLS---PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 63 ~~~~~p~~---~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
+.+.+|+. .+++|+++|.|||| ||++.|+|||||+++||+|.+ | .+|+||+.++|.++.|
T Consensus 7 ~~~~~pv~~d~~~~~Y~~~i~iGTP-pq~~~v~~DTGS~~lWv~c~~--c--------------~~Sst~~~v~C~s~~C 69 (413)
T 3vla_A 7 SALVVPVKKDASTLQYVTTINQRTP-LVSENLVVDLGGRFLWVDCDQ--N--------------YVSSTYRPVRCRTSQC 69 (413)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTT-TEEEEEEEETTCSSEEEECSS--S--------------CCCTTCEECBTTSHHH
T ss_pred ccEEEEeeecCCCCeEEEEEEcCCC-CcceEEEEeCCChhhhcccCC--C--------------CCCCCcCccCCCcccc
Confidence 45667776 46789999999999 999999999999999999876 4 2799999999999999
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeC-Ccee-EeEEEEEEEEeccCCCC----ceeecceEEece
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYG-DGSL-VARLYKDSLSMPVSSQK----SLVLHNFTFGCA 213 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~Yg-dGs~-~G~l~~D~v~~~~~~~~----~~~~~~~~FG~~ 213 (486)
...... .|. .|... ....|.++.|. |.+.|+ ||+. .|+|++|+|+|+..++. .+.++++.|||+
T Consensus 70 ~~~~~~-----~~~--~c~s~--~~~~c~~~~c~-~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~ 139 (413)
T 3vla_A 70 SLSGSI-----ACG--DCFNG--PRPGCNNNTCG-VFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCA 139 (413)
T ss_dssp HHTTCC-----EEE--CCSSC--CBTTBCSSEEE-ECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEE
T ss_pred cccccC-----CCc--ccccC--CCCCCCCCcCc-ceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECc
Confidence 876542 121 12111 12356677898 999995 7765 89999999999853322 368889999999
Q ss_pred ecCC--C---CcceeeecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeeccccccc-ccccCCCCC-
Q 011401 214 HTTL--G---EPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKE-KRVNSEEAE- 286 (486)
Q Consensus 214 ~~~~--~---~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~-~~~~~~~~~- 286 (486)
+.+. + .++||||||++.+|++.||..++.+ +++|||||.+.. . .+|.|+||++|..+ +.. ++.++
T Consensus 140 ~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~~~~i-~~~FS~cL~~~~---~---~~G~l~fGg~~~~~~p~~-~~~g~~ 211 (413)
T 3vla_A 140 PTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSF-KRKFAMCLSGST---S---SNSVIIFGNDPYTFLPNI-IVSDKT 211 (413)
T ss_dssp CGGGGTTSCTTCCEEEECSSSSSSHHHHHHHHHTC-CSEEEEECCSCS---S---SCEEEEEESCCEEETTTE-EECTTT
T ss_pred ccccccCcccccccccccCCCCcchHHHHhhhcCC-CceEEEeCCCCC---C---CceEEEECCCcccccccc-cccCCc
Confidence 9752 2 4799999999999999999987666 899999998731 1 57999999998641 000 14677
Q ss_pred eeEeecccCCCC----------CceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHH
Q 011401 287 FVYTDMLDNPKH----------PYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEF 356 (486)
Q Consensus 287 l~~tpl~~~~~~----------~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i 356 (486)
+.||||+.++.. ..+|+|+|++|+||++.+.++...+..+.++.+++||||||++++||+++|++|+++|
T Consensus 212 l~~tPl~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~ 291 (413)
T 3vla_A 212 LTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAF 291 (413)
T ss_dssp SEEEECBCCSSCCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHH
T ss_pred eeEeecccCCccccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHH
Confidence 999999987533 2689999999999999999887777766667789999999999999999999999999
Q ss_pred HHHhhc-cccccccccccCCCCCcccccCcc----ccCCCeEEEEEeC-CeeEEEeCCcceeEEccccCCCcccCCceEE
Q 011401 357 DRRLGR-VHERASQIEEKTGLSPCYYFDQVV----KGNVPTVELHFVG-SNSSVALPRKNYFYDFLDAGDGKAKKRNVGC 430 (486)
Q Consensus 357 ~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~~~f~g-g~~~~~l~~~~y~~~~~~~~~~~~~~~~~~C 430 (486)
.+++.. .+++. +....++.||..++.. ...+|+|+|+|+| + ++|+|++++|+++.. .+..|
T Consensus 292 ~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~-~~~~l~~~~y~~~~~---------~~~~C 358 (413)
T 3vla_A 292 IKESAARNITRV---ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSES-VVWTITGSNSMVYIN---------DNVVC 358 (413)
T ss_dssp HHHHHHTTCCEE---CCCTTCSCEEECTTCCEETTEECCCCEEEECSSTT-CEEEECHHHHEEEEE---------TTEEE
T ss_pred HHHhcccCCCcC---CCCCCCcceeccCCccccccccCCCcEEEEEcCCc-EEEEeCccceEEEeC---------CCcEE
Confidence 988652 12222 1223467899876432 1359999999998 5 899999999998742 35789
Q ss_pred EEEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcC------CCchh
Q 011401 431 LMLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARR------QCASL 479 (486)
Q Consensus 431 l~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~------~C~~~ 479 (486)
++|+..... .++.||||++|||++|+|||++|+|||||++ .|+++
T Consensus 359 l~~~~~~~~----~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~~~~~~c~~~ 409 (413)
T 3vla_A 359 LGVVDGGSN----LRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409 (413)
T ss_dssp ECEEEEESS----CSSSEEECHHHHTTEEEEEETTTTEEEEEEEGGGGTCCGGGS
T ss_pred EEEEecCCC----cccceeEehhhhcCeEEEEECCCCEEEEEEecccCcccccCc
Confidence 998854321 1357999999999999999999999999974 57654
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=3.1e-58 Score=473.10 Aligned_cols=357 Identities=24% Similarity=0.429 Sum_probs=270.7
Q ss_pred cccccCC---CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccc
Q 011401 64 QVSLPLS---PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACS 140 (486)
Q Consensus 64 ~~~~p~~---~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~ 140 (486)
.+.+|+. .+++|+++|.|||| +|++.|+|||||+++||+|.+ | .+|+|++.++|.++.|.
T Consensus 9 ~~~~pl~~~~~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--~--------------~~Sst~~~~~C~s~~C~ 71 (403)
T 3aup_A 9 LVVLPVQNDGSTGLHWANLQKRTP-LMQVPVLVDLNGNHLWVNCEQ--Q--------------YSSKTYQAPFCHSTQCS 71 (403)
T ss_dssp CEEEEEEECTTTCCEEEEEEETTT-TEEEEEEEETTCSSEEEECSS--C--------------CCCSSCBCCCTTBHHHH
T ss_pred cEEEeeecCCCCceEEEEEECCCC-CceeEEEEECCCCceeECCCC--C--------------CCCCCCCccCCCCcccc
Confidence 3556776 46789999999999 999999999999999999775 3 27999999999999998
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeC-Cce-eEeEEEEEEEEeccCCCCc------eeecceEEec
Q 011401 141 AAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYG-DGS-LVARLYKDSLSMPVSSQKS------LVLHNFTFGC 212 (486)
Q Consensus 141 ~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~Yg-dGs-~~G~l~~D~v~~~~~~~~~------~~~~~~~FG~ 212 (486)
..... .|. .|... ....|.+..|. |.+.|+ ||+ +.|.+++|+|+|++.++.. +.++++.|||
T Consensus 72 ~~~~~-----~c~--~c~~~--~~s~~~~~~~~-~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~ 141 (403)
T 3aup_A 72 RANTH-----QCL--SCPAA--SRPGCHKNTCG-LMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSC 141 (403)
T ss_dssp HTTCC-----CEE--ECSSS--CBTTBCSSEEE-EEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEE
T ss_pred Ccccc-----Ccc--ccCCC--CCCCCCCCcce-eEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEEC
Confidence 76542 132 23221 12346667898 999998 666 5899999999998744322 6888999999
Q ss_pred eecCC---C---CcceeeecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCC--C
Q 011401 213 AHTTL---G---EPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSE--E 284 (486)
Q Consensus 213 ~~~~~---~---~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~--~ 284 (486)
+.... + .++||||||++.+|++.||++ +.+.+++||+||.+.. . .+|.|+||+ |+.+ + .
T Consensus 142 ~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~-~~~~~~~FS~~L~~~~----~--~~G~l~fGg-d~~~-----~~~~ 208 (403)
T 3aup_A 142 APSFLVQKGLPRNTQGVAGLGHAPISLPNQLAS-HFGLQRQFTTCLSRYP----T--SKGAIIFGD-APNN-----MRQF 208 (403)
T ss_dssp ECGGGGSSSSSTTCCEEEECSSSTTSHHHHHHH-HHTCCSEEEEECCSCT----T--SCEEEEESC-HHHH-----C--C
T ss_pred CcccccccCCCCCCceEEECCCCCcCHHHHHHh-hcCCCCeEEEEcCCCC----C--CCeeEEECC-Cchh-----cccc
Confidence 98752 2 489999999999999999975 4567799999998741 1 579999999 7764 5 3
Q ss_pred -C-----CeeEeecccCCCCCceeEEeeeceEEeeeee-eCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHH
Q 011401 285 -A-----EFVYTDMLDNPKHPYFYSVGLEGISVGKRNI-PAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFD 357 (486)
Q Consensus 285 -~-----~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l-~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~ 357 (486)
| ++.|+||+.++. .+|.|.|++|+||++.+ .++...+.++..+.+++||||||++++||+++|++|+++|.
T Consensus 209 ~G~~~~~~l~~~Pl~~~~~--~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~ 286 (403)
T 3aup_A 209 QNQDIFHDLAFTPLTITLQ--GEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFA 286 (403)
T ss_dssp TTCCTTTTEEEEECEECTT--SCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHH
T ss_pred ccccccCceeecccccCCC--CcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHH
Confidence 4 999999998642 48999999999999988 77666665555567889999999999999999999999998
Q ss_pred HHhhccccccccccccCCCCCcccccCccccCCCeEEEEEeCC-eeEEEeCCcceeEEccccCCCcccCCceEEEEEEeC
Q 011401 358 RRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGS-NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNG 436 (486)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg-~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~ 436 (486)
+++.. +.+.. ....+..||..+. ...+|.|+|+|+|+ .++|+|++++|+++. .++..|++|+..
T Consensus 287 ~~~~~-~~~~~---~~~~~~~c~~c~~--~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~---------~~~~~C~~~~~~ 351 (403)
T 3aup_A 287 QQLPK-QAQVK---SVAPFGLCFNSNK--INAYPSVDLVMDKPNGPVWRISGEDLMVQA---------QPGVTCLGVMNG 351 (403)
T ss_dssp HTSCG-GGEEC---CCTTCSCEECGGG--CCCCCCEEEEESSTTCCEEEECHHHHEEEC------------CEEECEEEC
T ss_pred HHhcc-ccccC---CCCCCCceEECCC--cCcCCcEEEEEcCCCceEEEEcccceEEEc---------CCCeEEEEEEcC
Confidence 76543 22221 1123457887543 22599999999873 149999999999873 235689998865
Q ss_pred CCCcccCCCCceeechhheeccEEEEeCCCCEEEE-------EcCCCchhHh
Q 011401 437 GDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGF-------ARRQCASLWE 481 (486)
Q Consensus 437 ~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGf-------a~~~C~~~~~ 481 (486)
... .+..||||+.|||++|+|||++|+|||| ++++|+++++
T Consensus 352 ~~~----~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~~~~~~~C~~~~~ 399 (403)
T 3aup_A 352 GMQ----PRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFN 399 (403)
T ss_dssp CSC----CSSSEEECHHHHTTSCEEEETTTTEEEEESSCGGGGTCCGGGSCC
T ss_pred CCC----CCCcEEEChHHhcCeEEEEECCCCEEEEecccccccCCCcccccc
Confidence 431 1247999999999999999999999999 7788987643
No 3
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=3e-58 Score=468.39 Aligned_cols=315 Identities=20% Similarity=0.306 Sum_probs=252.3
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCCc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKSP 137 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~~ 137 (486)
...+|+. .+.+|+++|.|||| ||+|.|+|||||+++||+|.. |. .|..| +.|+|++|+||+...
T Consensus 50 ~~~~~l~n~~~~~Y~~~I~IGTP-~Q~f~vi~DTGSs~lWV~s~~--C~~~~~~C~~~---~~y~~~~SsT~~~~~---- 119 (383)
T 2x0b_A 50 TSSVILTNYMDTQYYGEIGIGTP-PQTFKVVFDTGSSNVWVPSSK--CSRLYTACVYH---KLFDASDSSSYKHNG---- 119 (383)
T ss_dssp -CEEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--SCTTSHHHHTS---CCBCGGGCTTCEEEE----
T ss_pred cceEeeeecCCCEEEEEEEECCC-CcEEEEEEeCCCCCeEEeccC--CCCCcccccCC---CCCCCCCCCcEEECC----
Confidence 3456776 57899999999999 999999999999999999998 85 69754 589999999998643
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC
Q 011401 138 ACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL 217 (486)
Q Consensus 138 ~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~ 217 (486)
|. |.+.||+|++.|.+++|+|+|++ +.++ +.|||++...
T Consensus 120 ----------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~ig~-----~~v~-~~Fg~a~~~~ 158 (383)
T 2x0b_A 120 ----------------------------------TE-LTLRYSTGTVSGFLSQDIITVGG-----ITVT-QMFGEVTEMP 158 (383)
T ss_dssp ----------------------------------EE-EEEECSSCEEEEEEEEEEEEETT-----EEEE-EEEEEEEECC
T ss_pred ----------------------------------cE-EEEEcCCccEEEEEEeeEEEEcC-----ceEE-EEEEEEEecC
Confidence 33 99999999999999999999998 7888 9999999764
Q ss_pred C------CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCC
Q 011401 218 G------EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEA 285 (486)
Q Consensus 218 ~------~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~ 285 (486)
+ .+|||||||++.++ ++.+|.+|+.+.+++||+||.+...... ..+|.|+|||+|+.+ +.+
T Consensus 159 g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~--~~~G~l~fGg~d~~~-----y~G 231 (383)
T 2x0b_A 159 ALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQ--SLGGQIVLGGSDPQH-----YEG 231 (383)
T ss_dssp HHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC------CCEEEEESSCCGGG-----EEE
T ss_pred CcccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCccc--CCCcEEEECCcChHH-----cCC
Confidence 3 58999999998764 6678888888889999999987521100 037999999999875 789
Q ss_pred CeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccc
Q 011401 286 EFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHE 365 (486)
Q Consensus 286 ~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 365 (486)
++.|+|+... .+|.|.|++|+||++.+... ++..+||||||+++++|+++|++|.++|.+.. .
T Consensus 232 ~l~~~pv~~~----~~w~v~l~~i~v~~~~~~~~---------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~--- 294 (383)
T 2x0b_A 232 NFHYINLIKT----GVWQIQMKGVSVGSSTLLCE---------DGCLALVDTGASYISGSTSSIEKLMEALGAKK-R--- 294 (383)
T ss_dssp EEEEEEBSST----TSCEEEECEEEESSCCCBST---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-C---
T ss_pred ceEEEEcCCC----ceEEEEEeEEEeCCceEEcC---------CCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-c---
Confidence 9999999853 58999999999999864321 24589999999999999999999999885432 1
Q ss_pred ccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCC
Q 011401 366 RASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSG 444 (486)
Q Consensus 366 ~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~ 444 (486)
... ....|+.. ..+|+|+|+|+| ++|+|++++|+++..+ .++..|+ +|...+... ..
T Consensus 295 -----~g~-~~v~C~~~-----~~~P~i~f~~~g--~~~~l~~~~yi~~~~~-------~~~~~C~~~~~~~~~~~--~~ 352 (383)
T 2x0b_A 295 -----LFD-YVVKCNEG-----PTLPDISFHLGG--KEYTLTSADYVFQESY-------SSKKLCTLAIHAMDIPP--PT 352 (383)
T ss_dssp -----SSC-EEEEGGGT-----TTCCCEEEEETT--EEEEECHHHHBCCCCC-------CTTSEEEBSEEECCCCT--TT
T ss_pred -----CCc-EEEecccc-----ccCceEEEEECC--EEEEECHHHhEeeccC-------CCCCeEEEEEEecccCC--CC
Confidence 000 01246543 348999999986 9999999999987421 2346899 677543211 11
Q ss_pred CCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 445 GPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 445 ~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
++.||||++|||++|+|||++|+|||||+++
T Consensus 353 ~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 353 GPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp CSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 3579999999999999999999999999864
No 4
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.3e-57 Score=462.62 Aligned_cols=309 Identities=20% Similarity=0.265 Sum_probs=251.5
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
....|+. .+.+|+++|.|||| ||++.|+|||||+++||+|.. |. .|.. ++.|+|++|+||+..+
T Consensus 45 ~~~~~l~n~~d~~Y~~~i~iGTP-pQ~~~v~~DTGSs~lWV~s~~--C~~~~C~~---~~~y~~~~SsT~~~~~------ 112 (370)
T 3psg_A 45 IGDEPLENYLDTEYFGTIGIGTP-AQDFTVIFDTGSSNLWVPSVY--CSSLACSD---HNQFNPDDSSTFEATS------ 112 (370)
T ss_dssp SCCCTTGGGTTCCEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSGGGTT---SCCBCGGGCTTCEEEE------
T ss_pred cceecceeccCCEEEEEEEEcCC-CCEEEEEEeCCCCccEEECCC--CCCcccCC---CCCCCCccCcCcEECC------
Confidence 4567776 47899999999999 999999999999999999988 75 4654 4589999999998643
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC-
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG- 218 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~- 218 (486)
|. |.+.||+|++.|.+++|+|+|++ +.++++.|||+....+
T Consensus 113 --------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~ig~-----~~v~~~~Fg~a~~~~~~ 154 (370)
T 3psg_A 113 --------------------------------QE-LSITYGTGSMTGILGYDTVQVGG-----ISDTNQIFGLSETEPGS 154 (370)
T ss_dssp --------------------------------EE-EEEESSSCEEEEEEEEEEEEETT-----EEEEEEEEEEECSCCCG
T ss_pred --------------------------------cE-EEEEeCCceEEEEEEEEEEeeCC-----cccCCeEEEEEEeeccc
Confidence 23 99999999999999999999998 7899999999998754
Q ss_pred -----CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCe
Q 011401 219 -----EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEF 287 (486)
Q Consensus 219 -----~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l 287 (486)
.++||||||++.+ +++.+|.+|+.+.+++||+||.+.. . .+|.|+|||+|+.+ +.+++
T Consensus 155 ~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~----~--~~G~l~fGg~D~~~-----y~g~l 223 (370)
T 3psg_A 155 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND----D--SGSVVLLGGIDSSY-----YTGSL 223 (370)
T ss_dssp GGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----------CEEEEETCCCGGG-----BSSCC
T ss_pred ccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCC----C--CCeEEEEEeeChHh-----cCCcc
Confidence 4799999999865 4677899888888999999998741 1 57999999999885 89999
Q ss_pred eEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccc
Q 011401 288 VYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERA 367 (486)
Q Consensus 288 ~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~ 367 (486)
.|+|+... .+|.|.+++|+||++.+... ++..+||||||+++++|++++++|.++|.+...
T Consensus 224 ~~~pv~~~----~~w~v~l~~i~v~g~~~~~~---------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~------ 284 (370)
T 3psg_A 224 NWVPVSVE----GYWQITLDSITMDGETIACS---------GGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN------ 284 (370)
T ss_dssp EEEECSEE----TTEEEEECEEESSSSEEECT---------TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC------
T ss_pred eeeccccc----ceeEEEEeEEEECCEEEecC---------CCceEEEcCCCCcEECCHHHHHHHHHHhCCccc------
Confidence 99999863 57999999999999877532 245799999999999999999999888754311
Q ss_pred ccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCC
Q 011401 368 SQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGP 446 (486)
Q Consensus 368 ~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~ 446 (486)
...+|..+|.....+|+|+|+|+| ++|+|++++|+++ . . ..|+ +|....... ..++
T Consensus 285 --------~~g~~~v~C~~~~~lP~i~f~~~g--~~~~l~~~~yi~~-~---------~-~~C~~~~~~~~~~~--~~~~ 341 (370)
T 3psg_A 285 --------SDGEMVISCSSIDSLPDIVFTIDG--VQYPLSPSAYILQ-D---------D-DSCTSGFEGMDVPT--SSGE 341 (370)
T ss_dssp --------TTCCEECCGGGGGGCCCEEEEETT--EEEEECHHHHEEE-C---------S-SCEEESEEEECCCT--TSCC
T ss_pred --------CCCcEEEECCCcccCCcEEEEECC--EEEEECHHHhccc-C---------C-CEEEEEEEeCCCCC--CCCC
Confidence 012344555444458999999987 9999999999987 1 1 2599 565432211 1134
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
.||||++|||++|+|||++|+|||||+++
T Consensus 342 ~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 342 LWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp EEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred cEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 79999999999999999999999999874
No 5
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=7.8e-57 Score=454.54 Aligned_cols=322 Identities=22% Similarity=0.277 Sum_probs=250.8
Q ss_pred ccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccc
Q 011401 65 VSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACS 140 (486)
Q Consensus 65 ~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~ 140 (486)
+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 13 ~~~~l~n~~~~~Y~~~i~iGtP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~------- 79 (351)
T 1tzs_A 13 AKEPLINYLDMEYFGTISIGSP-PQNFTVIFDTGSSNLWVPSVY--CTSPACKTH---SRFQPSQSSTYSQPG------- 79 (351)
T ss_dssp -CCTTGGGSSSCCCEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSGGGTTS---CCBCGGGCTTCBCCS-------
T ss_pred cceeceecCCCEEEEEEEECCC-CeEEEEEEeCCCcceEEecCC--CCccccCCC---CcCCcccCcceEECC-------
Confidence 456666 46789999999999 999999999999999999998 86 68643 589999999998532
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC--
Q 011401 141 AAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG-- 218 (486)
Q Consensus 141 ~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~-- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+
T Consensus 80 -------------------------------~~-~~i~Yg~Gs~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~ 122 (351)
T 1tzs_A 80 -------------------------------QS-FSIQYGTGSLSGIIGADQVSVEG-----LTVVGQQFGESVTEPGQT 122 (351)
T ss_dssp -------------------------------CE-EEEESSSCEEEEEEEEEEEEETT-----EEEEEEEEEEECSCCCGG
T ss_pred -------------------------------CE-EEEEeCCCCeEEEEEEeEEEECC-----eEECCeEEEEEEeccccc
Confidence 34 99999999999999999999998 7899999999987643
Q ss_pred ----CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCee
Q 011401 219 ----EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFV 288 (486)
Q Consensus 219 ----~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~ 288 (486)
..+||||||++.++ ++.+|.+|+.+.+++||+||.+.... . ..|.|+||++|+.+ +.+++.
T Consensus 123 ~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~--~--~~G~l~fGg~d~~~-----~~g~l~ 193 (351)
T 1tzs_A 123 FVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEG--G--AGSELIFGGYDHSH-----FSGSLN 193 (351)
T ss_dssp GGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC----C--TTCEEEETSCCGGG-----BCSCCE
T ss_pred cccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCC--C--CCCEEEECCCCHHH-----cCCceE
Confidence 47999999998654 67789988888899999999875211 1 37999999999875 889999
Q ss_pred EeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccc
Q 011401 289 YTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERAS 368 (486)
Q Consensus 289 ~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~ 368 (486)
|+|+... .+|.|.|++|+|+++.+... ....+||||||++++||+++|++|.+++.+... .
T Consensus 194 ~~p~~~~----~~~~v~l~~i~v~~~~~~~~---------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~-- 254 (351)
T 1tzs_A 194 WVPVTKQ----AYWQIALDNIQVGGTVMFCS---------EGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV----D-- 254 (351)
T ss_dssp EEECSEE----TTEEEEEEEEEETTEEEECT---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----S--
T ss_pred EEecCCC----ceEEEEeCEEEECCceEEcC---------CCceEEeccCCcceeCCHHHHHHHHHHhCCccc----C--
Confidence 9999853 58999999999999876422 235799999999999999999999998843211 0
Q ss_pred cccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCc
Q 011401 369 QIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPG 447 (486)
Q Consensus 369 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~ 447 (486)
. .....|+.. ..+|+|+|+|+| ++|+|++++|+++... .++..|+ +|....... ..+..
T Consensus 255 --g--~~~~~C~~~-----~~~P~i~f~f~g--~~~~i~~~~yi~~~~~-------~~~~~C~~~~~~~~~~~--~~~~~ 314 (351)
T 1tzs_A 255 --G--EYAVECANL-----NVMPDVTFTING--VPYTLSPTAYTLLDFV-------DGMQFCSSGFQGLDIHP--PAGPL 314 (351)
T ss_dssp --S--SEEECGGGG-----GGSCCEEEEETT--EEEEECTTTSEECC------------CCEEESEEECCCCT--TTCSC
T ss_pred --C--eEEEeCCCC-----ccCCcEEEEECC--EEEEECHHHhEeeccC-------CCCCeEEEEEEECCCCC--CCCCe
Confidence 0 001246543 348999999976 9999999999987421 1245799 576542110 01357
Q ss_pred eeechhheeccEEEEeCCCCEEEEEcCCCchhHhhhcC
Q 011401 448 ATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWESLNK 485 (486)
Q Consensus 448 ~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~~~~~~~ 485 (486)
||||+.|||++|+|||++++|||||+++|.+ .++|+|
T Consensus 315 ~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s-~~~~~~ 351 (351)
T 1tzs_A 315 WILGDVFIRQFYSVFDRGNNRVGLAPAVPWS-HPQFEK 351 (351)
T ss_dssp EEECHHHHHHEEEEEETTTTEEEEEEBC----------
T ss_pred EEEChHHhhheEEEEECCCCEEEEEECCccc-chhhcC
Confidence 9999999999999999999999999999987 566664
No 6
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.9e-56 Score=446.73 Aligned_cols=302 Identities=20% Similarity=0.265 Sum_probs=248.1
Q ss_pred cccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCc--ccccCCCCCCCCCCCCCCCcccccCCCccccc
Q 011401 66 SLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFEC--ILCENKQEKPAPPLNISSTATKVSCKSPACSA 141 (486)
Q Consensus 66 ~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C--~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~ 141 (486)
..|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ | ..|..+ +.|+|++|+|++...
T Consensus 5 ~~~l~n~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~-------- 70 (323)
T 3cms_A 5 SVPLTNYLDSQYFGKIYLGTP-PQEFTVLFDTGSSDFWVPSIY--CKSNACKNH---QRFDPRKSSTFQNLG-------- 70 (323)
T ss_dssp EEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSHHHHTS---CCBCGGGCTTCEEEE--------
T ss_pred eeeeEeccCCEEEEEEEECCC-CeEEEEEEeCCccceEEcCCC--CCcccccCC---CCCCCccCCCeEECC--------
Confidence 45565 47899999999999 999999999999999999998 8 678754 589999999998643
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC---
Q 011401 142 AHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG--- 218 (486)
Q Consensus 142 ~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~--- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ ++++++.|||+....+
T Consensus 71 ------------------------------~~-~~i~Yg~Gs~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~ 114 (323)
T 3cms_A 71 ------------------------------KP-LSIHYGTGSMQGILGYDTVTVSN-----IVDIQQTVGLSTQEPGDFF 114 (323)
T ss_dssp ------------------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEECCSHHH
T ss_pred ------------------------------cE-EEEEeCCCCeEEEEEEEEEEECC-----eEEeccEEEEEEecccccc
Confidence 33 99999999999999999999998 7899999999997643
Q ss_pred ---CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeE
Q 011401 219 ---EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVY 289 (486)
Q Consensus 219 ---~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~ 289 (486)
..+||||||++.+ +++.+|.+|+.+.+++||+||.+.. ..|.|+||++|+.+ +.+++.|
T Consensus 115 ~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~-------~~G~l~fGg~d~~~-----~~g~l~~ 182 (323)
T 3cms_A 115 TYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNG-------QESMLTLGAIDPSY-----YTGSLHW 182 (323)
T ss_dssp HHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTS-------SCEEEEESCCCGGG-----EEEEEEE
T ss_pred cccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCC-------CCEEEEECCCChhh-----ccCceEE
Confidence 5799999999765 4678899888888899999998742 34999999999874 7899999
Q ss_pred eecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccc
Q 011401 290 TDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ 369 (486)
Q Consensus 290 tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~ 369 (486)
+|+... .+|.|.+++|+|+++.+.++. ...+||||||++++||+++|++|.+++.+....
T Consensus 183 ~p~~~~----~~~~v~l~~i~v~~~~~~~~~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~------- 242 (323)
T 3cms_A 183 VPVTVQ----QYWQFTVDSVTISGVVVACEG---------GCQAILDTGTSKLVGPSSDILNIQQAIGATQNQ------- 242 (323)
T ss_dssp EECSSB----TTBEEEEEEEEETTEEEESTT---------CEEEEECTTCCSEEECHHHHHHHHHHHTCEEET-------
T ss_pred EECccC----CeEEEEEeeEEECCEEeecCC---------CcEEEEecCCccEeCCHHHHHHHHHHhCCeecC-------
Confidence 999853 589999999999998876432 357999999999999999999999988532110
Q ss_pred ccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCce
Q 011401 370 IEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGA 448 (486)
Q Consensus 370 ~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ 448 (486)
.. .....|+.. ..+|+|+|+|+| ++|+|++++|+++ .+..|+ +|..... +..|
T Consensus 243 -~g-~~~~~C~~~-----~~~P~i~f~f~g--~~~~i~~~~y~~~-----------~~~~C~~~i~~~~~------~~~~ 296 (323)
T 3cms_A 243 -YG-EFDIDCDNL-----SYMPTVVFEING--KMYPLTPSAYTSQ-----------DQGFCTSGFQSENH------SQKW 296 (323)
T ss_dssp -TT-EEEECTTCT-----TTSCCEEEEETT--EEEEECHHHHEEE-----------ETTEEEESEEEC---------CCE
T ss_pred -CC-cEEEECCCC-----ccCceEEEEECC--EEEEECHHHhccC-----------CCCEEEEEEEeCCC------CCcE
Confidence 00 001245542 348999999976 9999999999986 235799 4765421 2479
Q ss_pred eechhheeccEEEEeCCCCEEEEEcCC
Q 011401 449 TLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 449 ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
|||+.|||++|+|||++++|||||+++
T Consensus 297 iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 297 ILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECHHHhhceEEEEECCCCEEEEEECC
Confidence 999999999999999999999999874
No 7
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=8.7e-57 Score=456.09 Aligned_cols=317 Identities=21% Similarity=0.311 Sum_probs=256.7
Q ss_pred CcccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc---cccCCCCCCCCCCCCCCCcccccCCCc
Q 011401 63 QQVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI---LCENKQEKPAPPLNISSTATKVSCKSP 137 (486)
Q Consensus 63 ~~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~---~C~~~~~~~~f~~~~SsT~~~~~c~~~ 137 (486)
....+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 6 ~~~~~~l~~~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~~C~~~---~~y~~~~SsT~~~~~---- 75 (361)
T 1mpp_A 6 SVDTPGLYDFDLEEYAIPVSIGTP-GQDFYLLFDTGSSDTWVPHKG--CDNSEGCVGK---RFFDPSSSSTFKETD---- 75 (361)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTT-TEEEEEEEETTCCCCEEEBTT--CCGGGTCCSS---CCBCGGGCTTCEEEE----
T ss_pred ccceEEeecCCCCEEEEEEEECCC-CcEEEEEEcCCCCCeEECCCC--CCCCccCCCC---CcCCCccCCceEecC----
Confidence 34556776 37799999999999 999999999999999999998 87 78753 589999999998643
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC
Q 011401 138 ACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL 217 (486)
Q Consensus 138 ~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~ 217 (486)
|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....
T Consensus 76 ----------------------------------~~-~~i~Yg~Gs~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~ 115 (361)
T 1mpp_A 76 ----------------------------------YN-LNITYGTGGANGIYFRDSITVGG-----ATVKQQTLAYVDNVS 115 (361)
T ss_dssp ----------------------------------EE-EEEECSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEE
T ss_pred ----------------------------------Ce-EEEEECCceEEEEEEEEEEEECC-----EEEeceEEEEEEecc
Confidence 23 99999999999999999999998 789999999998653
Q ss_pred C-----------CcceeeecCCCCCc------------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccc
Q 011401 218 G-----------EPIGVAGFGRGLLS------------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYE 274 (486)
Q Consensus 218 ~-----------~~~GIlGLg~~~~S------------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d 274 (486)
+ ..+||||||++.++ ++.+|.+|+.+.+++||+||.+. . ..|.|+||++|
T Consensus 116 ~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~---~----~~G~l~fGg~d 188 (361)
T 1mpp_A 116 GPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTN---D----GGGQVVFGGVN 188 (361)
T ss_dssp SGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCS---S----SEEEEEESSCC
T ss_pred CccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCC---C----CCcEEEEecCC
Confidence 2 47999999997554 55688888878889999999874 1 57999999999
Q ss_pred cccccccCCCCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceE-EccCCcceecCHHHHHHHH
Q 011401 275 DKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMV-VDSGTTFTMLPASLYEKVV 353 (486)
Q Consensus 275 ~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~i-iDSGTt~t~lp~~~y~~l~ 353 (486)
+.+ +.+++.|+|++.......+|.|.|++|+|+++.+... ....+| |||||++++||+++|++|.
T Consensus 189 ~~~-----~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~---------~~~~ai~iDSGTt~~~lP~~~~~~l~ 254 (361)
T 1mpp_A 189 NTL-----LGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSF---------DGAQAFTIDTGTNFFIAPSSFAEKVV 254 (361)
T ss_dssp GGG-----BSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEEEE---------EEEEEEEEETTCCSEEEEHHHHHHHH
T ss_pred hhh-----cCCceEEEEcccCCCceeEEEEEEeEEEECCeeeccC---------CCCEEEEECCCCCceeCCHHHHHHHH
Confidence 875 8899999999875432238999999999999876422 134799 9999999999999999999
Q ss_pred HHHHHHhhccccccccccccCCCCCcccccCccccCC-CeEEEEE--eC----CeeEEEeCCcceeEEccccCCCcccCC
Q 011401 354 AEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNV-PTVELHF--VG----SNSSVALPRKNYFYDFLDAGDGKAKKR 426 (486)
Q Consensus 354 ~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~-P~i~~~f--~g----g~~~~~l~~~~y~~~~~~~~~~~~~~~ 426 (486)
+++.+.... . . ......|+.. ..+ |.|+|+| ++ + ++|+|++++|+++.. .+
T Consensus 255 ~~~~~~~~~----~---~-g~~~~~C~~~-----~~~~p~i~f~f~~g~~~~~g-~~~~i~~~~y~~~~~--------~~ 312 (361)
T 1mpp_A 255 KAALPDATE----S---Q-QGYTVPCSKY-----QDSKTTFSLVLQKSGSSSDT-IDVSVPISKMLLPVD--------KS 312 (361)
T ss_dssp HHHCTTCEE----E---T-TEEEEEHHHH-----TTCCCEEEEEEECTTCSSCE-EEEEEEGGGGEEECS--------SS
T ss_pred HHhCCcccC----C---C-CcEEEECCCc-----ccCCCcEEEEEEcCCcCCCC-eEEEECHHHhEEecC--------CC
Confidence 998654221 0 0 0001246542 236 9999999 51 4 999999999998742 13
Q ss_pred ceEEE-EEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 427 NVGCL-MLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 427 ~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
+..|+ +|.... ++.||||+.|||++|+|||++++|||||+++|+..
T Consensus 313 ~~~C~~~i~~~~-------~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~~~ 359 (361)
T 1mpp_A 313 GETCMFIVLPDG-------GNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYE 359 (361)
T ss_dssp SCEEEESEEEES-------SSCCEEEHHHHTTEEEEEETTTTEEEEEEBCTTTC
T ss_pred CCeeEEEEEeCC-------CCCEEEChHHhccEEEEEECCCCEEEEEEcccCCC
Confidence 46898 777531 24799999999999999999999999999999854
No 8
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=1.1e-55 Score=442.31 Aligned_cols=308 Identities=24% Similarity=0.390 Sum_probs=250.5
Q ss_pred ccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCccc--ccCCCCCCCCCCCCCCCcccccCCCcccccc
Q 011401 67 LPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECIL--CENKQEKPAPPLNISSTATKVSCKSPACSAA 142 (486)
Q Consensus 67 ~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~--C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~ 142 (486)
+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |.. |..+ +.|+|++|+|++...
T Consensus 5 ~~l~~~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~lWv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~--------- 69 (329)
T 1dpj_A 5 VPLTNYLNAQYYTDITLGTP-PQNFKVILDTGSSNLWVPSNE--CGSLACFLH---SKYDHEASSSYKANG--------- 69 (329)
T ss_dssp EECEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSHHHHTS---CCBCGGGCTTCEEEE---------
T ss_pred eeeeecCCCEEEEEEEECCC-CcEEEEEEeCCCcCeEEecCC--CCCcccCCc---CcCCcccCcCeEECC---------
Confidence 4554 46789999999999 999999999999999999998 875 8654 589999999998532
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC----
Q 011401 143 HSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---- 218 (486)
Q Consensus 143 ~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ ++++++.|||++...+
T Consensus 70 -----------------------------~~-~~i~Yg~Gs~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~f~ 114 (329)
T 1dpj_A 70 -----------------------------TE-FAIQYGTGSLEGYISQDTLSIGD-----LTIPKQDFAEATSEPGLTFA 114 (329)
T ss_dssp -----------------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEECCHHHHT
T ss_pred -----------------------------cE-EEEEECCceEEEEEEEEEEEECC-----eEECCeEEEEEEecCccccc
Confidence 33 99999999889999999999998 7899999999987542
Q ss_pred --CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEe
Q 011401 219 --EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYT 290 (486)
Q Consensus 219 --~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~t 290 (486)
..+||||||++.++ +..+|.+|+.+.+++||+||.+...... .+|.|+||++|+.+ +.+++.|+
T Consensus 115 ~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~---~~G~l~fGg~d~~~-----~~g~l~~~ 186 (329)
T 1dpj_A 115 FGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTE---NGGEATFGGIDESK-----FKGDITWL 186 (329)
T ss_dssp TCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCS---SSEEEEESSCCGGG-----EEEEEEEE
T ss_pred cCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCC---CCcEEEEcCCChhh-----cCCceEEE
Confidence 57999999998765 4467888777778999999986421111 46999999999874 78999999
Q ss_pred ecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccc
Q 011401 291 DMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQI 370 (486)
Q Consensus 291 pl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~ 370 (486)
|+... .+|.|.+++|+|+++.+... ...+||||||++++||+++|++|.+++.+...
T Consensus 187 p~~~~----~~~~v~l~~i~v~~~~~~~~----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~--------- 243 (329)
T 1dpj_A 187 PVRRK----AYWEVKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMINAEIGAKKG--------- 243 (329)
T ss_dssp ECSSB----TTBEEEEEEEEETTEEEECS----------SCEEEECTTCSCEEECHHHHHHHHHHHTCEEC---------
T ss_pred EcCCC----ceEEEEeeeEEECCeEecCC----------CccEEeeCCCCcEECCHHHHHHHHHHhCCccC---------
Confidence 99853 58999999999999877532 35899999999999999999999998853210
Q ss_pred cccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCcee
Q 011401 371 EEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGAT 449 (486)
Q Consensus 371 ~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~I 449 (486)
...||..+|.....+|+|+|+|+| .+|+|++++|+++. +..|+ +|....... ..++.||
T Consensus 244 -----~~g~~~~~C~~~~~~P~i~f~f~g--~~~~i~~~~y~~~~-----------~~~C~~~~~~~~~~~--~~~~~~i 303 (329)
T 1dpj_A 244 -----WTGQYTLDCNTRDNLPDLIFNFNG--YNFTIGPYDYTLEV-----------SGSCISAITPMDFPE--PVGPLAI 303 (329)
T ss_dssp -----TTSSEEECGGGGGGCCCEEEEETT--EEEEECTTTSEEEE-----------TTEEEECEEECCCCT--TTCSEEE
T ss_pred -----CCCeEEEECCCCCcCCcEEEEECC--EEEEECHHHhEecC-----------CCEEEEEEEecccCC--CCCCcEE
Confidence 123566666544458999999987 99999999999873 14799 676432110 1135899
Q ss_pred echhheeccEEEEeCCCCEEEEEcCC
Q 011401 450 LGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 450 LG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
||+.|||++|+|||++++|||||+++
T Consensus 304 LG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 304 VGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp ECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EChHHhcceEEEEECCCCEEEEEECC
Confidence 99999999999999999999999874
No 9
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=5.4e-56 Score=442.99 Aligned_cols=301 Identities=20% Similarity=0.269 Sum_probs=247.9
Q ss_pred ccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccccc
Q 011401 67 LPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSAA 142 (486)
Q Consensus 67 ~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~ 142 (486)
.|+. .+.+|+++|.|||| ||++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 3 ~~l~n~~d~~Y~~~i~iGtP-~Q~~~v~~DTGSs~~Wv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~--------- 67 (320)
T 4aa9_A 3 EPLTSYLDSQYFGKIYIGTP-PQEFTVVFDTGSSDLWVPSIY--CKSNVCKNH---HRFDPRKSSTFRNLG--------- 67 (320)
T ss_dssp -----CCCCCCEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSHHHHTS---CCBCGGGCTTCEEEE---------
T ss_pred ccceeccCCEEEEEEEECCC-CeEEEEEEeCCCCceEEcCCC--CCccccCCC---CCCCCCCCcCeEcCC---------
Confidence 3454 47789999999999 999999999999999999998 76 57643 589999999998653
Q ss_pred cCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC----
Q 011401 143 HSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---- 218 (486)
Q Consensus 143 ~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ ..++++.|||+....+
T Consensus 68 -----------------------------~~-~~i~Yg~gs~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~ 112 (320)
T 4aa9_A 68 -----------------------------KP-LSIHYGTGSMEGFLGYDTVTVSN-----IVDPNQTVGLSTEQPGEVFT 112 (320)
T ss_dssp -----------------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEECCSHHHH
T ss_pred -----------------------------cE-EEEEECCcEEEEEEEEEEEEECC-----EeecCeEEEEEEEccccccc
Confidence 23 99999999999999999999998 7899999999987654
Q ss_pred --CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEe
Q 011401 219 --EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYT 290 (486)
Q Consensus 219 --~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~t 290 (486)
..+||||||++.+ +++.+|.+|+.+.+++||+||.+. . ..|.|+||++|+.+ +.+++.|+
T Consensus 113 ~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~-----~--~~G~l~fGg~d~~~-----~~g~l~~~ 180 (320)
T 4aa9_A 113 YSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN-----G--QGSMLTLGAIDPSY-----YTGSLHWV 180 (320)
T ss_dssp SCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSS-----S--SCCEEEETCCCGGG-----EEEEEEEE
T ss_pred ccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCC-----C--CCeEEEEcccCHHH-----ccCceEEE
Confidence 4699999998754 578899998888899999999874 1 57999999999875 78999999
Q ss_pred ecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccc
Q 011401 291 DMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQI 370 (486)
Q Consensus 291 pl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~ 370 (486)
|+... .+|.|.+++|+|+++.+..+. ...+||||||++++||+++|++|.+++.+....
T Consensus 181 p~~~~----~~w~v~l~~i~v~~~~~~~~~---------~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~-------- 239 (320)
T 4aa9_A 181 PVTLQ----QYWQFTVDSVTINGVAVACVG---------GCQAILDTGTSVLFGPSSDILKIQMAIGATENR-------- 239 (320)
T ss_dssp ECSSB----TTBEEEECEEEETTEEEESTT---------CEEEEECTTCSSEEEEHHHHHHHHHHTTCEECT--------
T ss_pred EcccC----CceEEEEeEEEECCEEeccCC---------CcEEEEECCCCcEECCHHHHHHHHHHhCCcccC--------
Confidence 99753 589999999999998876432 357999999999999999999999888432110
Q ss_pred cccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCcee
Q 011401 371 EEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGAT 449 (486)
Q Consensus 371 ~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~I 449 (486)
...|..+|.....+|+|+|+|+| ++++|++++|+.+ .+..|+ +|....+ ++.||
T Consensus 240 ------~g~~~~~C~~~~~~p~i~f~f~g--~~~~l~~~~y~~~-----------~~~~C~~~i~~~~~------~~~~i 294 (320)
T 4aa9_A 240 ------YGEFDVNCGNLRSMPTVVFEING--RDYPLSPSAYTSK-----------DQGFCTSGFQGDNN------SELWI 294 (320)
T ss_dssp ------TSCEEECGGGGGGCCCEEEEETT--EEEEECHHHHEEE-----------ETTEEEESEEEETT------CCCEE
T ss_pred ------CCcEEEeCCCCCcCceEEEEECC--EEEEECHHHhccC-----------CCCeEEEEEEcCCC------CCcEE
Confidence 11244444433458999999987 9999999999975 235799 5765322 34799
Q ss_pred echhheeccEEEEeCCCCEEEEEcCC
Q 011401 450 LGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 450 LG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
||+.|||++|+|||++++|||||+++
T Consensus 295 lG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 295 LGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp ECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EChHHhcceEEEEECCCCEEEEEecC
Confidence 99999999999999999999999874
No 10
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=6.4e-56 Score=444.95 Aligned_cols=303 Identities=21% Similarity=0.309 Sum_probs=248.5
Q ss_pred ccccCC-CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC--CCCcc---------cccCCCCCCCCCCCCCCCcccc
Q 011401 65 VSLPLS-PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH--PFECI---------LCENKQEKPAPPLNISSTATKV 132 (486)
Q Consensus 65 ~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~--~~~C~---------~C~~~~~~~~f~~~~SsT~~~~ 132 (486)
+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|. + |. .|.. .+.|+|++|+|++..
T Consensus 3 ~~~~l~~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~~~--C~~~~~~~~~~~C~~---~~~y~~~~SsT~~~~ 76 (334)
T 1j71_A 3 VPTTLINEGPSYAADIVVGSN-QQKQTVVIDTGSSDLWVVDTDAE--CQVTYSGQTNNFCKQ---EGTFDPSSSSSAQNL 76 (334)
T ss_dssp EEEEEEECSSSEEEEEEETTT-TEEEEEEEETTCCCEEEEEEEEE--ECCCSTTCCTTGGGS---SCCBCGGGCTTCEEE
T ss_pred eeEEEecCCcEEEEEEEEcCC-CcEEEEEEcCCCCCEEEecCCCC--CcCcccccccccccC---CCcCCcccCCCcccC
Confidence 556666 46789999999999 99999999999999999976 4 64 3543 458999999999864
Q ss_pred cCCCcccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEe
Q 011401 133 SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFG 211 (486)
Q Consensus 133 ~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG 211 (486)
. |. |.+.|++|+. .|.+++|+|+|++ +.++++.||
T Consensus 77 ~--------------------------------------~~-~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~~~~~~fg 112 (334)
T 1j71_A 77 N--------------------------------------QD-FSIEYGDLTSSQGSFYKDTVGFGG-----ISIKNQQFA 112 (334)
T ss_dssp E--------------------------------------EE-EEEEBTTSCEEEEEEEEEEEEETT-----EEEEEEEEE
T ss_pred C--------------------------------------Cc-eEEEECCCCEEEEEEEEEEEEECC-----EEEccEEEE
Confidence 3 33 9999999985 8999999999998 789999999
Q ss_pred ceecCCCCcceeeecCCCCC--------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCC
Q 011401 212 CAHTTLGEPIGVAGFGRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSE 283 (486)
Q Consensus 212 ~~~~~~~~~~GIlGLg~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~ 283 (486)
|+.... ..+||||||++.+ +++.+|.+|+.+.+++||+||.+.. . ..|.|+||++|+.+ +
T Consensus 113 ~~~~~~-~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~----~--~~G~l~fGg~d~~~-----~ 180 (334)
T 1j71_A 113 DVTTTS-VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSED----A--STGKIIFGGVDNAK-----Y 180 (334)
T ss_dssp EEEEES-SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTT----C--SEEEEEETEEETTS-----E
T ss_pred EEEecC-CCccEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCC----C--CCeEEEEeeechHH-----c
Confidence 999764 4899999999764 7899999988888899999998641 1 57999999999874 7
Q ss_pred CCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcc
Q 011401 284 EAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV 363 (486)
Q Consensus 284 ~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 363 (486)
.+++.|+|+... .+|.|.|++|+||++.+.. ...+||||||++++||+++|++|.+++.+....
T Consensus 181 ~g~l~~~p~~~~----~~~~v~l~~i~v~g~~~~~-----------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~~- 244 (334)
T 1j71_A 181 TGTLTALPVTSS----VELRVHLGSINFDGTSVST-----------NADVVLDSGTTITYFSQSTADKFARIVGATWDS- 244 (334)
T ss_dssp EEEEEEEECCCS----SSCEEEEEEEEETTEEEEE-----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEET-
T ss_pred cCceEEEEccCC----CeEEEEEeEEEECCEeccC-----------CccEEEeCCCCcEecCHHHHHHHHHHcCCcccC-
Confidence 899999999864 3799999999999988753 237999999999999999999999998654311
Q ss_pred ccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCccc
Q 011401 364 HERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEEL 442 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~ 442 (486)
. .....+..|+. +|.|+|+|.|| ++|+|++++|+++.. .+..|+. +...
T Consensus 245 ---~---~~~~~~~~C~~--------~p~i~f~f~~g-~~~~i~~~~y~~~~~---------~~~~C~~~i~~~------ 294 (334)
T 1j71_A 245 ---R---NEIYRLPSCDL--------SGDAVFNFDQG-VKITVPLSELILKDS---------DSSICYFGISRN------ 294 (334)
T ss_dssp ---T---TTEEECSSSCC--------CSEEEEEESTT-CEEEEEGGGGEEECS---------SSSCEEESEEEC------
T ss_pred ---C---CceEEEEcCCC--------CCceEEEEcCC-cEEEECHHHheeecC---------CCCeeEEEEeEC------
Confidence 0 00001134642 79999999755 999999999998732 2234985 4432
Q ss_pred CCCCceeechhheeccEEEEeCCCCEEEEEcCCCch
Q 011401 443 SGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478 (486)
Q Consensus 443 ~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~ 478 (486)
+.||||+.|||++|+|||++++|||||+++|++
T Consensus 295 ---~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 327 (334)
T 1j71_A 295 ---DANILGDNFLRRAYIVYDLDDKTISLAQVKYTS 327 (334)
T ss_dssp ---TTCEECHHHHTTEEEEEETTTTEEEEEEECCCS
T ss_pred ---CCcEEChHhhccEEEEEECCCCEEEEEecCCCC
Confidence 259999999999999999999999999999985
No 11
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=3e-55 Score=438.35 Aligned_cols=305 Identities=21% Similarity=0.319 Sum_probs=249.1
Q ss_pred cccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCccccc
Q 011401 66 SLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSA 141 (486)
Q Consensus 66 ~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~ 141 (486)
.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 3 ~~~l~n~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~-------- 68 (324)
T 1am5_A 3 TEQMKNEADTEYYGVISIGTP-PESFKVIFDTGSSNLWVSSSH--CSAQACSNH---NKFKPRQSSTYVETG-------- 68 (324)
T ss_dssp EEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEECBTT--CCSHHHHTS---CCBCGGGCTTCEEEE--------
T ss_pred eeeeecCCCCEEEEEEEECCC-CeEEEEEEeCCCcceEEecCC--CCcccccCC---CcCCCccCCCeEeCC--------
Confidence 45665 57799999999999 999999999999999999998 86 58654 589999999998643
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC---
Q 011401 142 AHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG--- 218 (486)
Q Consensus 142 ~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~--- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ +.++++.|||+....+
T Consensus 69 ------------------------------~~-~~i~Yg~Gs~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~ 112 (324)
T 1am5_A 69 ------------------------------KT-VDLTYGTGGMRGILGQDTVSVGG-----GSDPNQELGESQTEPGPFQ 112 (324)
T ss_dssp ------------------------------EE-EEEECSSCEEEEEEEEEEEESSS-----SCEEEEEEEEEEECCSTTT
T ss_pred ------------------------------cE-EEEEECCCCeEEEEEECceeECC-----cEEcccEEEEEEecccccc
Confidence 23 99999999999999999999998 6889999999987643
Q ss_pred ---CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeE
Q 011401 219 ---EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVY 289 (486)
Q Consensus 219 ---~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~ 289 (486)
..+||||||++.+ +++.+|.+|+.+.+++||+||.+.. . ..|.|+||++|+.+ +.+++.|
T Consensus 113 ~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~----~--~~G~l~fGg~d~~~-----~~g~l~~ 181 (324)
T 1am5_A 113 AAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGG----A--NGSEVMLGGVDNSH-----YTGSIHW 181 (324)
T ss_dssp TTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTT----C--SCEEEEESSCCGGG-----BCSCCEE
T ss_pred cCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCC----C--CCcEEEECccCHHH-----cCCceEE
Confidence 4799999999865 4677899888788999999998742 1 47999999999875 8899999
Q ss_pred eecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccc
Q 011401 290 TDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQ 369 (486)
Q Consensus 290 tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~ 369 (486)
+|+... .+|.|.+++|+|+++.+... + ..+||||||++++||+++|++|.+++.+. ..
T Consensus 182 ~p~~~~----~~~~v~l~~i~v~~~~~~~~---------~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~~------- 239 (324)
T 1am5_A 182 IPVTAE----KYWQVALDGITVNGQTAACE---------G-CQAIVDTGTSKIVAPVSALANIMKDIGAS-EN------- 239 (324)
T ss_dssp EEEEEE----TTEEEEECEEEETTEECCCC---------C-EEEEECTTCSSEEECTTTHHHHHHHHTCE-EC-------
T ss_pred EecCCC----cEEEEEEeEEEECCceeecc---------C-ceEEEecCCccEECCHHHHHHHHHHhCCc-cc-------
Confidence 999853 58999999999999875321 1 57999999999999999999999988543 11
Q ss_pred ccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCce
Q 011401 370 IEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGA 448 (486)
Q Consensus 370 ~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ 448 (486)
. ......|+.. ..+|+|+|+|+| ++|+|++++|+++. +..|+ +|....... ..+..|
T Consensus 240 -~-g~~~~~C~~~-----~~~P~i~f~f~g--~~~~i~~~~y~~~~-----------~~~C~~~~~~~~~~~--~~~~~~ 297 (324)
T 1am5_A 240 -Q-GEMMGNCASV-----QSLPDITFTING--VKQPLPPSAYIEGD-----------QAFCTSGLGSSGVPS--NTSELW 297 (324)
T ss_dssp -C-CCEECCTTSS-----SSSCCEEEEETT--EEEEECHHHHEEES-----------SSCEEECEEECCSCC--SSSCEE
T ss_pred -C-CcEEEeCCCc-----ccCCcEEEEECC--EEEEECHHHhcccC-----------CCeEEEEEEECccCC--CCCCcE
Confidence 0 0011246543 348999999976 99999999999872 35799 676542110 013579
Q ss_pred eechhheeccEEEEeCCCCEEEEEcCC
Q 011401 449 TLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 449 ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
|||+.|||++|+|||++++|||||+++
T Consensus 298 ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 298 IFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp EECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred EEChHHhccEEEEEECCCCEEEEEECC
Confidence 999999999999999999999999874
No 12
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.3e-55 Score=444.10 Aligned_cols=312 Identities=22% Similarity=0.367 Sum_probs=250.2
Q ss_pred ccccCC-CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC--CCCcc---------cccCCCCCCCCCCCCCCCcccc
Q 011401 65 VSLPLS-PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH--PFECI---------LCENKQEKPAPPLNISSTATKV 132 (486)
Q Consensus 65 ~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~--~~~C~---------~C~~~~~~~~f~~~~SsT~~~~ 132 (486)
+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|. + |. .|.. .+.|+|++|+|++..
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~~~--C~~~~~~~~~~~C~~---~~~y~~~~SsT~~~~ 76 (342)
T 2qzx_A 3 VAVTLHNEAITYTADITVGSD-NQKLNVIVDTGSSDLWIPDSNVI--CIPKWRGDKGDFCKS---AGSYSPASSRTSQNL 76 (342)
T ss_dssp EEEEEEECSSCEEEEEEETTT-TEEEEEEEETTCCCEEEEEEEEE--ECCCSSSCCTTGGGT---TCCBCGGGCTTCEEE
T ss_pred eeEEEecCCeEEEEEEEECCC-CcEEEEEEeCCCCCeEEecCCCC--ccCccccCccccccC---CCcCCcccCCCcccC
Confidence 455665 46789999999999 99999999999999999866 4 64 3543 468999999999865
Q ss_pred cCCCcccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecceEEe
Q 011401 133 SCKSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNFTFG 211 (486)
Q Consensus 133 ~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~~FG 211 (486)
. |. |.+.|++|+. .|.+++|+|+|++ +.++++.||
T Consensus 77 ~--------------------------------------~~-~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg 112 (342)
T 2qzx_A 77 N--------------------------------------TR-FDIKYGDGSYAKGKLYKDTVGIGG-----VSVRDQLFA 112 (342)
T ss_dssp E--------------------------------------EE-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEE
T ss_pred C--------------------------------------Cc-EEEEeCCCCeEEEEEEEEEEEECC-----EEecceEEE
Confidence 3 33 9999999985 8999999999998 789999999
Q ss_pred ceecCCCCcceeeecCCCCC--------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCC
Q 011401 212 CAHTTLGEPIGVAGFGRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSE 283 (486)
Q Consensus 212 ~~~~~~~~~~GIlGLg~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~ 283 (486)
|++... ..+||||||+... +++.+|.+|+.+.+++||+||.+.. . ..|.|+||++|+.+ +
T Consensus 113 ~~~~~~-~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~----~--~~G~l~fGg~d~~~-----~ 180 (342)
T 2qzx_A 113 NVWSTS-ARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAE----A--STGQIIFGGIDKAK-----Y 180 (342)
T ss_dssp EEEEEC-SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTT----C--SEEEEEETEEETTS-----B
T ss_pred EEEecC-CCcCEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCC----C--CCeEEEECccchhh-----E
Confidence 999765 4899999999754 7899999988787899999998641 1 57999999999874 8
Q ss_pred CCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcc
Q 011401 284 EAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRV 363 (486)
Q Consensus 284 ~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~ 363 (486)
.+++.|+|+... .+|.|.|++|+||++.+.. ...+||||||++++||+++|++|.+++.+....
T Consensus 181 ~g~l~~~p~~~~----~~~~v~l~~i~v~g~~~~~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~- 244 (342)
T 2qzx_A 181 SGSLVDLPITSE----KKLTVGLRSVNVRGRNVDA-----------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKF- 244 (342)
T ss_dssp SSCCEEEECCCS----SSCEEEEEEEEETTEEEEE-----------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEE-
T ss_pred ecceEEEeccCC----ceEEEEEeEEEECCEecCC-----------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeee-
Confidence 899999999864 3799999999999988753 237999999999999999999999998654321
Q ss_pred ccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccC
Q 011401 364 HERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELS 443 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~ 443 (486)
.+. ....|..+|.. +|.|+|+|+|| ++|+|++++|+++.... ....+..|++.+...
T Consensus 245 -~~~--------~~~~~~~~C~~---~p~i~f~f~~g-~~~~i~~~~~~~~~~~~----~~~~~~~C~~~i~~~------ 301 (342)
T 2qzx_A 245 -DSA--------GNKVYVADCKT---SGTIDFQFGNN-LKISVPVSEFLFQTYYT----SGKPFPKCEVRIRES------ 301 (342)
T ss_dssp -CTT--------SCEEEEECTTC---CCEEEEEETTT-EEEEEEGGGGEECCBCT----TSCBCSSEEESEEEC------
T ss_pred -ccC--------CCcEEEEECCC---CCcEEEEECCC-cEEEEcHHHhccccccc----CCCCCCccEEEEecC------
Confidence 110 01123333322 79999999756 99999999999864210 001235799544222
Q ss_pred CCCceeechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 444 GGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 444 ~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
+.||||+.|||++|+|||++++|||||+++|+..
T Consensus 302 --~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~ 335 (342)
T 2qzx_A 302 --EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTSE 335 (342)
T ss_dssp --SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCSC
T ss_pred --CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCCC
Confidence 2599999999999999999999999999999853
No 13
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=6.3e-55 Score=455.59 Aligned_cols=329 Identities=21% Similarity=0.318 Sum_probs=252.7
Q ss_pred cccccCCC--CCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc---cccCCCCCCCCCCCCCCCcccccCCCcc
Q 011401 64 QVSLPLSP--GSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI---LCENKQEKPAPPLNISSTATKVSCKSPA 138 (486)
Q Consensus 64 ~~~~p~~~--~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~---~C~~~~~~~~f~~~~SsT~~~~~c~~~~ 138 (486)
...+|+.+ +.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..| +.|+|++|+||+...
T Consensus 41 ~~~~~l~n~~~~~Y~~~i~IGTP-~Q~~~v~~DTGSs~lWV~~~~--C~~~~~C~~~---~~y~~~~SsT~~~~~----- 109 (478)
T 1qdm_A 41 GDIVALKNYMNAQYFGEIGVGTP-PQKFTVIFDTGSSNLWVPSAK--CYFSIACYLH---SRYKAGASSTYKKNG----- 109 (478)
T ss_dssp SCSGGGCCGGGCCEEEEEEETTT-TEEEEEEEETTCCCCEEEBTT--CCSCGGGGGS---CCBCGGGCTTCBCCC-----
T ss_pred CceEEeEeccCCEEEEEEEECCC-CeEEEEEEcCCCcceEEecCC--CCCCccccCC---CCCCcccCCCeeeCC-----
Confidence 45677763 6789999999999 999999999999999999998 74 68764 589999999998532
Q ss_pred cccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC
Q 011401 139 CSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG 218 (486)
Q Consensus 139 C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~ 218 (486)
|. |.+.||+|++.|.+++|+|+|++ +.++++.|||++...+
T Consensus 110 ---------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~ig~-----~~v~~~~Fg~a~~~~~ 150 (478)
T 1qdm_A 110 ---------------------------------KP-AAIQYGTGSIAGYFSEDSVTVGD-----LVVKDQEFIEATKEPG 150 (478)
T ss_dssp ---------------------------------CE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEECCB
T ss_pred ---------------------------------cE-EEEEcCCCCeEEEEEEEEEEECC-----eEECCEEEEEEEecCC
Confidence 33 99999999999999999999998 7899999999987543
Q ss_pred ------CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCC
Q 011401 219 ------EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAE 286 (486)
Q Consensus 219 ------~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~ 286 (486)
.++||||||++.+| +..+|.+|+.+.+++||+||.+.... . .+|.|+||++|+.+ +.++
T Consensus 151 ~~f~~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~--~--~~G~l~fGg~d~~~-----~~G~ 221 (478)
T 1qdm_A 151 ITFLVAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDE--G--EGGEIIFGGMDPKH-----YVGE 221 (478)
T ss_dssp SHHHHCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC---------CEEEEETCCCTTS-----EEEE
T ss_pred cccccccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCC--C--CCeEEEeCCcCHhh-----cCCC
Confidence 46999999998775 45678887777889999999874211 1 57999999999874 7899
Q ss_pred eeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHh------
Q 011401 287 FVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRL------ 360 (486)
Q Consensus 287 l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~------ 360 (486)
+.|+|+... .+|.|.+++|+||++.+.+.. ++..+||||||++++||+++|++|.++|.+..
T Consensus 222 l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~--------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~C 289 (478)
T 1qdm_A 222 HTYVPVTQK----GYWQFDMGDVLVGGKSTGFCA--------GGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQEC 289 (478)
T ss_dssp EEEEEEEEE----TTEEEEECCEEETTEECSTTT--------TCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHH
T ss_pred ceEEeccCC----CeEEEEEeEEEECCEEEeecC--------CCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccc
Confidence 999999753 589999999999998776532 24589999999999999999999999885321
Q ss_pred -------h-----cccccccc-------------------------cccc-----C------------------------
Q 011401 361 -------G-----RVHERASQ-------------------------IEEK-----T------------------------ 374 (486)
Q Consensus 361 -------~-----~~~~~~~~-------------------------~~~~-----~------------------------ 374 (486)
. ....+... .+.. .
T Consensus 290 k~~v~~yg~~ii~~l~~~~~p~~vC~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n 369 (478)
T 1qdm_A 290 KTIVSQYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQN 369 (478)
T ss_dssp HHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC---------------------------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhhhhhHHHHhhhhccChhhhhccccccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhcc
Confidence 0 00000000 0000 0
Q ss_pred ---------CCCCcccc---------cCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEe
Q 011401 375 ---------GLSPCYYF---------DQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMN 435 (486)
Q Consensus 375 ---------~~~~C~~~---------~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~ 435 (486)
..+.|+.. +|+....+|+|+|+|+| ++|+|+|++|+++..+ .....|++ |..
T Consensus 370 ~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~~~lP~i~f~~gg--~~~~l~p~~yi~~~~~-------~~~~~C~~~~~~ 440 (478)
T 1qdm_A 370 KTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGG--KKFALKPEEYILKVGE-------GAAAQCISGFTA 440 (478)
T ss_dssp CCHHHHHHHHHHHTTCBCCSSSCCEECGGGGTTCCCEEEEETT--EEEEECHHHHEEECSC-------GGGCCEEESEEE
T ss_pred ccHHHHHHHHHHHhhccCCCCCeEEeecccccccccEEEEECC--EEEEEChHHhEEEccC-------CCCCeEEEEEEe
Confidence 00134433 33333469999999986 9999999999987431 22467995 654
Q ss_pred CCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcC
Q 011401 436 GGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 436 ~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~ 474 (486)
.+... ..++.||||++|||++|+|||++|+|||||++
T Consensus 441 ~~~~~--~~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a 477 (478)
T 1qdm_A 441 MDIPP--PRGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 477 (478)
T ss_dssp CCCCT--TSCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccCCC--CCCCcEEECHHHhccEEEEEECCCCEEEEEeC
Confidence 32111 12468999999999999999999999999986
No 14
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.1e-54 Score=434.96 Aligned_cols=303 Identities=20% Similarity=0.265 Sum_probs=242.9
Q ss_pred cCCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCC
Q 011401 68 PLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLP 147 (486)
Q Consensus 68 p~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~ 147 (486)
|...+.+|+++|.|||| +|++.|+|||||+++||+|.+ |..|..+ ..+.|+|++|+|++.++|
T Consensus 10 ~~~~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~~~-~~~~y~~~~SsT~~~~~~------------- 72 (329)
T 3c9x_A 10 SDSADSEYITSVSIGTP-AQVLPLDFDTGSSDLWVFSSE--TPKSSAT-GHAIYTPSKSSTSKKVSG------------- 72 (329)
T ss_dssp SSTTCCCEEEEEEETTT-TEEEEEEEETTCCCEEECBTT--SCHHHHT-TSCCBCGGGCTTCEECTT-------------
T ss_pred CCCCCCEEEEEEEECCC-CeEEEEEEcCCCCCeEEecCC--CCccccC-CCCcCCcccCcCceEcCC-------------
Confidence 55678899999999999 999999999999999999998 8877533 356899999999986532
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCC------CCc
Q 011401 148 TSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------GEP 220 (486)
Q Consensus 148 ~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------~~~ 220 (486)
|. |.+.|++|+ +.|.+++|+|+|++ +.++++.|||+.... ...
T Consensus 73 ------------------------~~-~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~~~~ 122 (329)
T 3c9x_A 73 ------------------------AS-WSISYGDGSSSSGDVYTDKVTIGG-----FSVNTQGVESATRVSTEFVQDTVI 122 (329)
T ss_dssp ------------------------CB-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHCTTC
T ss_pred ------------------------Ce-EEEEeCCCCcEEEEEEEEEEEECC-----EEEcceEEEEEEecCccccccCCC
Confidence 33 999999999 59999999999998 789999999998754 257
Q ss_pred ceeeecCCCCCc---------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEee
Q 011401 221 IGVAGFGRGLLS---------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTD 291 (486)
Q Consensus 221 ~GIlGLg~~~~S---------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tp 291 (486)
+||||||++.++ ++.+|.+ .+.+++||+||.+. ..|.|+||++|+.+ +.+++.|+|
T Consensus 123 ~GilGLg~~~~s~~~~~~~~~~~~~l~~--~i~~~~FS~~l~~~--------~~G~l~fGg~d~~~-----~~g~l~~~p 187 (329)
T 3c9x_A 123 SGLVGLAFDSGNQVRPHPQKTWFSNAAS--SLAEPLFTADLRHG--------QNGSYNFGYIDTSV-----AKGPVAYTP 187 (329)
T ss_dssp CEEEECSCGGGCCCBSSCCCCHHHHHHT--TSSSSEEEEECCSS--------SCEEEEESSCCGGG-----CSSCEEEEE
T ss_pred ceeEEeCcccccccCCCCCCCHHHHHHH--hcCCCEEEEEecCC--------CCcEEEEeCcChhh-----cccceEEEE
Confidence 999999997654 5667776 36679999999763 57999999999875 889999999
Q ss_pred cccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccccc
Q 011401 292 MLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIE 371 (486)
Q Consensus 292 l~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~ 371 (486)
+... ..+|.|.|++|+||++.+.. ....+||||||++++||+++|++|.+++..... .... .
T Consensus 188 ~~~~---~~~~~v~l~~i~v~~~~~~~----------~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~---~~~~--~ 249 (329)
T 3c9x_A 188 VDNS---QGFWEFTASGYSVGGGKLNR----------NSIDGIADTGTTLLLLDDNVVDAYYANVQSAQY---DNQQ--E 249 (329)
T ss_dssp CBCT---TSSCEEEECCEEETTCCCCS----------CCEEEEECTTCCSEEECHHHHHHHHTTCTTCEE---ETTT--T
T ss_pred ccCC---CceEEEEEeeEEECCEeccC----------CCceEEEECCCCcEeCCHHHHHHHHHhCCCcEE---cCCC--C
Confidence 9853 35899999999999986531 134799999999999999999999887743211 1000 0
Q ss_pred ccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCCCceee
Q 011401 372 EKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGGPGATL 450 (486)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~~~~IL 450 (486)
. -...|+ . .+|+|+|+|+| ++|+||+++|++...+ .+...|++ |..... .+.|||
T Consensus 250 ~--~~~~C~-----~--~~P~i~f~f~g--~~~~ip~~~~~~~~~~-------~~~~~C~~~i~~~~~------~~~~IL 305 (329)
T 3c9x_A 250 G--VVFDCD-----E--DLPSFSFGVGS--STITIPGDLLNLTPLE-------EGSSTCFGGLQSSSG------IGINIF 305 (329)
T ss_dssp E--EEEETT-----C--CCCCEEEEETT--EEEEECGGGGEEEESS-------TTCSEEEESEEECTT------TTSEEE
T ss_pred E--EEEECC-----C--CCCcEEEEECC--EEEEECHHHeeeeccC-------CCCCeEEEEEEcCCC------CCcEEE
Confidence 0 011355 2 38999999986 9999999999986321 13468996 554321 247999
Q ss_pred chhheeccEEEEeCCCCEEEEEcC
Q 011401 451 GNYQQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 451 G~~fl~~~~vvfD~~~~rIGfa~~ 474 (486)
|+.|||++|+|||++++|||||++
T Consensus 306 G~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 306 GDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp CHHHHTTEEEEEETTTTEEEEEEC
T ss_pred ChHHhccEEEEEECCCCEEeEecC
Confidence 999999999999999999999974
No 15
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=2.7e-55 Score=441.82 Aligned_cols=316 Identities=20% Similarity=0.303 Sum_probs=254.2
Q ss_pred CcccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCC
Q 011401 63 QQVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKS 136 (486)
Q Consensus 63 ~~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~ 136 (486)
..+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 6 ~~~~~~l~n~~d~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~--C~~~~~~C~~~---~~y~~~~SsT~~~~~--- 76 (341)
T 3k1w_A 6 TTSSVILTNYMDTQYYGEIGIGTP-PQTFKVVFDTGSSNVWVPSSK--CSRLYTACVYH---KLFDASDSSSYKHNG--- 76 (341)
T ss_dssp BCEEEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--SCTTCHHHHTS---CCBCGGGCTTCEEEE---
T ss_pred CCccccceEccCCEEEEEEEEcCC-CcEEEEEEeCCCcceEEccCC--CCCCCCcccCC---CCCCCCcCcCeeECC---
Confidence 34567776 47899999999999 999999999999999999998 76 68643 589999999998532
Q ss_pred cccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecC
Q 011401 137 PACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTT 216 (486)
Q Consensus 137 ~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~ 216 (486)
|. |.+.|++|++.|.+++|+|+|++ ..+ ++.|||+...
T Consensus 77 -----------------------------------~~-~~i~Yg~gs~~G~~~~D~v~ig~-----~~v-~~~fg~~~~~ 114 (341)
T 3k1w_A 77 -----------------------------------TE-LTLRYSTGTVSGFLSQDIITVGG-----ITV-TQMFGEVTEM 114 (341)
T ss_dssp -----------------------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEE-EEEEEEEEEC
T ss_pred -----------------------------------CE-EEEEECCcEEEEEEEEEEEEECC-----cee-eEEEEEEEEc
Confidence 33 99999999999999999999998 778 9999999876
Q ss_pred CC------CcceeeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCC
Q 011401 217 LG------EPIGVAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEE 284 (486)
Q Consensus 217 ~~------~~~GIlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~ 284 (486)
.+ ..+||||||++..+ ++.+|.+|+.+.+++||+||.+....+.. ..|.|+||++|+.+ +.
T Consensus 115 ~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~--~~G~l~fGg~d~~~-----~~ 187 (341)
T 3k1w_A 115 PALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQS--LGGQIVLGGSDPQH-----YE 187 (341)
T ss_dssp CHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-------CCEEEEESSCCGGG-----EE
T ss_pred cccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCC--CCCEEEECccChHH-----cc
Confidence 43 46999999998764 78899998888899999999875311111 47999999999875 78
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccc
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVH 364 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~ 364 (486)
+++.|+|+... .+|.|.+++|+|+++.+..+. ...+||||||++++||+++|++|.+++.+....
T Consensus 188 g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~~---------~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~-- 252 (341)
T 3k1w_A 188 GNFHYINLIKT----GVWQIQMKGVSVGSSTLLCED---------GCLALVDTGASYISGSTSSIEKLMEALGAKKRL-- 252 (341)
T ss_dssp EEEEEEECSST----TSCEEEECCEEETTEEEECTT---------CEEEEECTTCSSEEECHHHHHHHHHHHTCEECS--
T ss_pred CceEEEecCCC----CEEEEEEeEEEECCEEeecCC---------CCEEEEECCCChhcCCHHHHHHHHHHcCCeecC--
Confidence 99999999853 589999999999998754332 357999999999999999999999988533210
Q ss_pred cccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccC
Q 011401 365 ERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELS 443 (486)
Q Consensus 365 ~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~ 443 (486)
.+ |..+|.....+|+|+|+|+| ++|+|++++|+++..+ .++..|+ +|....... .
T Consensus 253 ---------~g----~~~~C~~~~~~p~i~f~f~g--~~~~l~~~~~~~~~~~-------~~~~~C~~~i~~~~~~~--~ 308 (341)
T 3k1w_A 253 ---------FD----YVVKCNEGPTLPDISFHLGG--KEYTLTSADYVFQESY-------SSKKLCTLAIHAMDIPP--P 308 (341)
T ss_dssp ---------SC----EEEEGGGGGGCCCEEEEETT--EEEEECHHHHBCCSCC-------CTTSEEEBSEEECCCCT--T
T ss_pred ---------CC----eEEeCCCCCcCCcEEEEECC--EEEEECHHHheeEccC-------CCCCeEEeEEEecccCC--C
Confidence 01 44445443458999999987 9999999999987432 2356899 566432100 1
Q ss_pred CCCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 444 GGPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 444 ~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
.+..||||+.|||++|+|||++++|||||+++
T Consensus 309 ~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 309 TGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp TCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 13579999999999999999999999999875
No 16
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=3.5e-55 Score=440.60 Aligned_cols=307 Identities=21% Similarity=0.339 Sum_probs=252.6
Q ss_pred cccccCC-CCCcEEEEEEecCCCCccEEEEEEcCCCeeeee-----cCCCCcccccCCCCCCCCCCCCCCCcccccCCCc
Q 011401 64 QVSLPLS-PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLP-----CHPFECILCENKQEKPAPPLNISSTATKVSCKSP 137 (486)
Q Consensus 64 ~~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~-----~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~ 137 (486)
.+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+ |.+ |..|.. .+.|+|++|+|++.++|
T Consensus 2 ~i~~~l~~~~~~Y~~~i~iGtP-~Q~~~v~~DTGSs~~Wv~~~~~~C~~--~~~C~~---~~~y~~~~SsT~~~~~~--- 72 (339)
T 3fv3_A 2 SISLSLINEGPSYASKVSVGSN-KQQQTVIIDTGSSDFWVVDSNAQCGK--GVDCKS---SGTFTPSSSSSYKNLGA--- 72 (339)
T ss_dssp CEEEEEEECSSSEEEEEEETTT-TEEEEEEEETTCCCEEEEEEEEEECT--TCCTTT---TCCBCGGGCTTCEEEEE---
T ss_pred ceeeEEEcCCCEEEEEEEEcCC-CcEEEEEEeCCCCceEEecCCCCCCC--CCCCCC---CCcCCCccCcceeeCCc---
Confidence 3566776 46789999999999 999999999999999998 655 667864 46899999999996542
Q ss_pred ccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecC
Q 011401 138 ACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTT 216 (486)
Q Consensus 138 ~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~ 216 (486)
. |.+.|++|+ +.|.+++|+|+|++ +.++++.|||++..
T Consensus 73 -----------------------------------~-~~i~Yg~gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~ 111 (339)
T 3fv3_A 73 -----------------------------------A-FTIRYGDGSTSQGTWGKDTVTING-----VSITGQQIADVTQT 111 (339)
T ss_dssp -----------------------------------E-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEE
T ss_pred -----------------------------------e-EEEEECCCceEEEEEEEEEEEECC-----EEECceEEEEEEec
Confidence 3 999999995 59999999999998 78999999999987
Q ss_pred CCCcceeeecCCCCCc----------------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccc
Q 011401 217 LGEPIGVAGFGRGLLS----------------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRV 280 (486)
Q Consensus 217 ~~~~~GIlGLg~~~~S----------------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~ 280 (486)
.+ .+||||||++..+ |+.||.+|+.+.+++||+||.+.. . ..|.|+||++|+.+
T Consensus 112 ~~-~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~----~--~~G~l~fGg~d~~~--- 181 (339)
T 3fv3_A 112 SV-DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPS----A--ETGTIIFGGVDNAK--- 181 (339)
T ss_dssp SS-SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTT----C--SEEEEEETEEETTS---
T ss_pred CC-CceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCC----C--CCeEEEEeeechHH---
Confidence 65 7999999997643 889999988888999999998642 1 47999999999874
Q ss_pred cCCCCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHh
Q 011401 281 NSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRL 360 (486)
Q Consensus 281 ~~~~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~ 360 (486)
+.+++.|+|+... .+|.|.+++|+|+++.+... ..+||||||++++||+++|++|.+++.+..
T Consensus 182 --~~g~l~~~p~~~~----~~~~v~l~~i~v~g~~~~~~-----------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~ 244 (339)
T 3fv3_A 182 --YSGKLVAEQVTSS----QALTISLASVNLKGSSFSFG-----------DGALLDSGTTLTYFPSDFAAQLADKAGARL 244 (339)
T ss_dssp --BSSCCEEEEBCCS----SSCEEEEEEEEESSCEEEEE-----------EEEEECTTBSSEEECHHHHHHHHHHHTCEE
T ss_pred --eecceEEEecccC----ccEEEEEEEEEECCEeecCC-----------ccEEEeCCCCCEecCHHHHHHHHHHcCCEE
Confidence 8899999999864 37999999999999877532 479999999999999999999999997543
Q ss_pred hccccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCC
Q 011401 361 GRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDE 439 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~ 439 (486)
.. ..... . .....|+. ..+|.|+|+|++| ++++||+++|+++. ++..|+ +|.. +
T Consensus 245 ~~-~~~~~--~--~~~~~C~~------~~~p~i~f~f~~g-~~~~v~~~~~~~~~----------~~~~C~~~i~~--~- 299 (339)
T 3fv3_A 245 VQ-VARDQ--Y--LYFIDCNT------DTSGTTVFNFGNG-AKITVPNTEYVYQN----------GDGTCLWGIQP--S- 299 (339)
T ss_dssp EE-EETTE--E--EEEECTTC------CCCSEEEEEETTS-CEEEEEGGGGEEEC----------SSSCEEESEEE--C-
T ss_pred cc-ccccC--c--eEEEecCC------CCCCcEEEEECCC-CEEEECHHHheeeC----------CCCeEEEEEEe--C-
Confidence 21 00000 0 01124654 2389999999755 99999999999873 224575 7765 1
Q ss_pred cccCCCCceeechhheeccEEEEeCCCCEEEEEcCCCch
Q 011401 440 EELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478 (486)
Q Consensus 440 ~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~ 478 (486)
..||||+.|||++|+|||++++|||||+++|++
T Consensus 300 ------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 332 (339)
T 3fv3_A 300 ------DDTILGDNFLRHAYLLYNLDANTISIAQVKYTT 332 (339)
T ss_dssp ------SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred ------CcEEeChHHHhCEEEEEECCCCEEEEEecCCCC
Confidence 269999999999999999999999999999984
No 17
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=7.6e-55 Score=436.16 Aligned_cols=302 Identities=19% Similarity=0.261 Sum_probs=242.2
Q ss_pred cCCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCC
Q 011401 68 PLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLP 147 (486)
Q Consensus 68 p~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~ 147 (486)
|+..+.+|+++|.|||| +|++.|+|||||+++||+|.+ |..|.. ..+.|+|++|+|++.++|
T Consensus 10 ~~~~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~~--~~~~y~~~~SsT~~~~~~------------- 71 (329)
T 1oew_A 10 IDSLDDAYITPVQIGTP-AQTLNLDFDTGSSDLWVFSSE--TTASEV--XQTIYTPSKSTTAKLLSG------------- 71 (329)
T ss_dssp SSTTCCCEEEEEEETTT-TEEEEEEEETTCCCEEECBTT--SCGGGC---CCCBCGGGCTTCEEEEE-------------
T ss_pred cCCCCCEEEEEEEECCC-CeEEEEEECCCCCCeEEecCC--CCcccc--ccCccCCccCccceecCC-------------
Confidence 56678899999999999 999999999999999999998 888754 356999999999996532
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCC------CCc
Q 011401 148 TSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------GEP 220 (486)
Q Consensus 148 ~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------~~~ 220 (486)
|. |.+.|++|+ +.|.+++|+|+|++ +.++++.|||++... ...
T Consensus 72 ------------------------~~-~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~~~~~~~ 121 (329)
T 1oew_A 72 ------------------------AT-WSISYGDGSSSSGDVYTDTVSVGG-----LTVTGQAVESAKKVSSSFTEDSTI 121 (329)
T ss_dssp ------------------------EE-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHCTTC
T ss_pred ------------------------Ce-EEEEeCCCCcEEEEEEEEEEEECC-----EEEeeeEEEEEEecCccccccCCC
Confidence 23 999999999 59999999999998 789999999999754 257
Q ss_pred ceeeecCCCCCc---------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEee
Q 011401 221 IGVAGFGRGLLS---------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTD 291 (486)
Q Consensus 221 ~GIlGLg~~~~S---------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tp 291 (486)
+||||||++.++ ++.+|.+| +.+++||+||.+. ..|.|+||++|+.+ +.+++.|+|
T Consensus 122 ~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~--------~~G~l~fGg~d~~~-----~~g~l~~~p 186 (329)
T 1oew_A 122 DGLLGLAFSTLNTVSPTQQKTFFDNAKAS--LDSPVFTADLGYH--------APGTYNFGFIDTTA-----YTGSITYTA 186 (329)
T ss_dssp CEEEECSCGGGCCCBSSCCCCHHHHHTTT--SSSSEEEEECCSS--------SCEEEEESCCCTTS-----SSSCCEEEE
T ss_pred ceEEEeccccccccCcCCCCCHHHHHHHh--ccCcEEEEEccCC--------CCeEEEEeccChHh-----cccceEEEE
Confidence 999999997654 56788763 6679999999763 57999999999874 889999999
Q ss_pred cccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccccc
Q 011401 292 MLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIE 371 (486)
Q Consensus 292 l~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~ 371 (486)
+... ..+|.|.+++|+||++.+.. ....+||||||++++||+++|++|.++|..... .... .
T Consensus 187 ~~~~---~~~~~v~l~~i~v~~~~~~~----------~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~---~~~~--g 248 (329)
T 1oew_A 187 VSTK---QGFWEWTSTGYAVGSGTFKS----------TSIDGIADTGTTLLYLPATVVSAYWAQVSGAKS---SSSV--G 248 (329)
T ss_dssp CBCT---TSSCEEEEEEEEETTSCCEE----------EEEEEEECTTCCSEEECHHHHHHHHTTSTTCEE---ETTT--T
T ss_pred ccCC---CceEEEEEeeEEECCeeccC----------CCceEEEeCCCCCEECCHHHHHHHHHhCCCcEE---cCCC--C
Confidence 9853 35899999999999976531 134799999999999999999999887743211 1000 0
Q ss_pred ccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCCCceee
Q 011401 372 EKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGGPGATL 450 (486)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~~~~IL 450 (486)
. -...|+ . .+|+|+|+|+| ++|+||+++|++...+ .+...|++ |..... ++.|||
T Consensus 249 ~--~~~~C~-----~--~~P~i~f~fgg--~~~~ip~~~~~~~~~~-------~~~~~C~~~i~~~~~------~~~~iL 304 (329)
T 1oew_A 249 G--YVFPCS-----A--TLPSFTFGVGS--ARIVIPGDYIDFGPIS-------TGSSSCFGGIQSSAG------IGINIF 304 (329)
T ss_dssp E--EEEETT-----C--CCCCEEEEETT--EEEEECHHHHEEEESS-------TTCSEEEESEEESTT------TSSEEE
T ss_pred E--EEEECC-----C--CCCcEEEEECC--EEEEECHHHeeeeecC-------CCCCeEEEEEEeCCC------CCceEE
Confidence 0 012355 2 38999999965 9999999999986321 23468996 554322 347999
Q ss_pred chhheeccEEEEeC-CCCEEEEEcC
Q 011401 451 GNYQQQGFEVVYDL-EKGKVGFARR 474 (486)
Q Consensus 451 G~~fl~~~~vvfD~-~~~rIGfa~~ 474 (486)
|+.|||++|+|||+ +++|||||++
T Consensus 305 G~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 305 GDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp CHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred ChHHhcCEEEEEECCCCceEEEecC
Confidence 99999999999999 9999999974
No 18
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=6.4e-55 Score=436.86 Aligned_cols=304 Identities=20% Similarity=0.307 Sum_probs=246.5
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPT 148 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~ 148 (486)
.+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 10 ~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~lWv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~--------------- 68 (329)
T 1htr_B 10 MDAAYFGEISIGTP-PQNFLVLFDTGSSNLWVPSVY--CQSQACTSH---SRFNPSESSTYSTNG--------------- 68 (329)
T ss_dssp TTCCEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSHHHHTS---CCBCGGGCTTCEEEE---------------
T ss_pred cCCEEEEEEEECCC-CcEEEEEEcCCCccEEEecCC--CCCcccCCC---CcCCCccCCCeEECC---------------
Confidence 56789999999999 999999999999999999998 86 48654 589999999998643
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC------Ccce
Q 011401 149 SDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG------EPIG 222 (486)
Q Consensus 149 ~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~------~~~G 222 (486)
|. |.+.|++|++.|.+++|+|+|++ ++++++.|||+....+ ..+|
T Consensus 69 -----------------------~~-~~i~Yg~gs~~G~~~~D~v~~g~-----~~~~~~~fg~~~~~~~~~~~~~~~~G 119 (329)
T 1htr_B 69 -----------------------QT-FSLQYGSGSLTGFFGYDTLTVQS-----IQVPNQEFGLSENEPGTNFVYAQFDG 119 (329)
T ss_dssp -----------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEEEEEEEESSCSSGGGGGCSCCE
T ss_pred -----------------------cE-EEEEeCCCCeEEEEEeeeEEEcc-----eEECceEEEEEEEccccccccCCCce
Confidence 23 99999999999999999999998 7899999999997643 4799
Q ss_pred eeecCCCCCc------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccCC
Q 011401 223 VAGFGRGLLS------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDNP 296 (486)
Q Consensus 223 IlGLg~~~~S------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~~ 296 (486)
|||||++.++ ++.+|.+|+.+.+++||+||.+... . ..|.|+||++|+.+ +.+++.|+|+...
T Consensus 120 ilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~---~--~~G~l~fGg~d~~~-----~~g~l~~~p~~~~- 188 (329)
T 1htr_B 120 IMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQG---S--SGGAVVFGGVDSSL-----YTGQIYWAPVTQE- 188 (329)
T ss_dssp EEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCS---S--EEEEEEESSCCGGG-----EEEEEEEEEBCSS-
T ss_pred EEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCC---C--CCcEEEEcccCHHH-----cCCceEEEECCCC-
Confidence 9999998754 6788998887889999999987521 0 27999999999874 7899999999853
Q ss_pred CCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCCC
Q 011401 297 KHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTGL 376 (486)
Q Consensus 297 ~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~ 376 (486)
.+|.|.+++|+|+++.+.... ....+||||||++++||+++|++|.+++.+.... . ....
T Consensus 189 ---~~~~v~l~~i~v~~~~~~~~~--------~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~--------~-g~~~ 248 (329)
T 1htr_B 189 ---LYWQIGIEEFLIGGQASGWCS--------EGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDE--------Y-GQFL 248 (329)
T ss_dssp ---SSCEEEECEEEETTEECCTTT--------TCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECT--------T-SCEE
T ss_pred ---ceEEEEEeEEEECCceeeecC--------CCceEEEecCCccEECCHHHHHHHHHHhCCeecC--------C-CeEE
Confidence 589999999999998754111 2457999999999999999999999988543210 0 0001
Q ss_pred CCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCC-ceeechhh
Q 011401 377 SPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGP-GATLGNYQ 454 (486)
Q Consensus 377 ~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~-~~ILG~~f 454 (486)
..|+.. ..+|+|+|+|+| ++|+|++++|+++. . + .|+ +|....... ..++ .||||+.|
T Consensus 249 ~~C~~~-----~~~P~i~f~f~g--~~~~i~~~~y~~~~---------~-g-~C~~~~~~~~~~~--~~~~~~~iLG~~f 308 (329)
T 1htr_B 249 VNCNSI-----QNLPSLTFIING--VEFPLPPSSYILSN---------N-G-YCTVGVEPTYLSS--QNGQPLWILGDVF 308 (329)
T ss_dssp ECGGGG-----GGSCCEEEEETT--EEEEECHHHHEEEC---------S-S-CEEESEEEECCCC--TTSSCEEEECHHH
T ss_pred EeCCCc-----ccCCcEEEEECC--EEEEECHHHhcccC---------C-C-EEEEEEEECCCCC--CCCCceEEEChHH
Confidence 246543 348999999976 99999999999873 1 3 799 676432110 0134 79999999
Q ss_pred eeccEEEEeCCCCEEEEEcCC
Q 011401 455 QQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 455 l~~~~vvfD~~~~rIGfa~~~ 475 (486)
||++|+|||++++|||||+++
T Consensus 309 l~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 309 LRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp HTTEEEEEETTTTEEEEEEEC
T ss_pred hccEEEEEECCCCEEEEEeCC
Confidence 999999999999999999864
No 19
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.4e-54 Score=433.52 Aligned_cols=300 Identities=19% Similarity=0.231 Sum_probs=244.1
Q ss_pred CCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCC
Q 011401 69 LSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPT 148 (486)
Q Consensus 69 ~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~ 148 (486)
...+.+|+++|.|||| +|++.|+|||||+++||+|.+ |..| .+..+.|+|++|+|++...
T Consensus 11 ~~~~~~Y~~~i~iGTP-~q~~~v~~DTGSs~lWv~~~~--c~~c--~~~~~~y~~~~SsT~~~~~--------------- 70 (325)
T 2apr_A 11 YGNDIEYYGQVTIGTP-GKKFNLDFDTGSSDLWIASTL--CTNC--GSGQTKYDPNQSSTYQADG--------------- 70 (325)
T ss_dssp ETTTTEEEEEEEETTT-TEEEEEEEETTCCCCEEEBTT--CSSC--CTTSCCBCGGGCTTCEEEE---------------
T ss_pred cCCCCEEEEEEEECCC-CeEEEEEEcCCCCCEEEccCC--CchH--hcCCCCCCcccCCCeeeCC---------------
Confidence 3467899999999999 999999999999999999998 8888 3346799999999998522
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCC-----Ccce
Q 011401 149 SDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG-----EPIG 222 (486)
Q Consensus 149 ~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~-----~~~G 222 (486)
|. |.+.|++|+ +.|.+++|+|+|++ ..++++.|||+....+ ..+|
T Consensus 71 -----------------------~~-~~i~Yg~Gs~~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~f~~~~~~G 121 (325)
T 2apr_A 71 -----------------------RT-WSISYGDGSSASGILAKDNVNLGG-----LLIKGQTIELAKREAASFASGPNDG 121 (325)
T ss_dssp -----------------------EE-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHTSSCSE
T ss_pred -----------------------CE-EEEEECCCCCEEEEEEEEEEEECC-----EEECcEEEEEEeccCcccccCCCce
Confidence 33 999999998 59999999999998 7899999999987543 3899
Q ss_pred eeecCCCCC-------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecccC
Q 011401 223 VAGFGRGLL-------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDN 295 (486)
Q Consensus 223 IlGLg~~~~-------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~ 295 (486)
|||||++.+ +++.+|.+|+.+.+++||+||.+... . ..|.|+||++|+.+ +.+++.|+|+...
T Consensus 122 ilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~---~--~~G~l~fGg~d~~~-----~~g~l~~~p~~~~ 191 (325)
T 2apr_A 122 LLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKN---G--GGGEYIFGGYDSTK-----FKGSLTTVPIDNS 191 (325)
T ss_dssp EEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGGG---T--CCEEEEETCCCGGG-----BCSCCEEEECBCT
T ss_pred EEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCCC---C--CCCEEEEccCCchh-----ccCceEEEEccCC
Confidence 999998765 47789998877889999999976321 1 57999999999875 8899999999753
Q ss_pred CCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccccCC
Q 011401 296 PKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEEKTG 375 (486)
Q Consensus 296 ~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~ 375 (486)
..+|.|.+++|+||++ +.. ....+||||||++++||+++|++++++|.+.+.. . .. .
T Consensus 192 ---~~~~~v~l~~i~vg~~-~~~----------~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~----~---g~--~ 248 (325)
T 2apr_A 192 ---RGWWGITVDRATVGTS-TVA----------SSFDGILDTGTTLLILPNNIAASVARAYGASDNG----D---GT--Y 248 (325)
T ss_dssp ---TSSCEEEECEEEETTE-EEE----------CCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECS----S---SC--E
T ss_pred ---CCEEEEEEeEEEECCE-ecC----------CCceEEEecCCccEECCHHHHHHHHHHHhcccCC----C---Ce--E
Confidence 3579999999999983 321 1347999999999999999999999998655432 0 00 0
Q ss_pred CCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEE-EeCCCCcccCCCCceeechhh
Q 011401 376 LSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLML-MNGGDEEELSGGPGATLGNYQ 454 (486)
Q Consensus 376 ~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i-~~~~~~~~~~~~~~~ILG~~f 454 (486)
...|+. ..+|+|+|+|+| .+++||+++|+++. . +..|++. .... .+.||||+.|
T Consensus 249 ~~~C~~------~~~p~i~f~f~g--~~~~ip~~~~~~~~---------~-~~~C~~~i~~~~-------~~~~iLG~~f 303 (325)
T 2apr_A 249 TISCDT------SAFKPLVFSING--ASFQVSPDSLVFEE---------F-QGQCIAGFGYGN-------WGFAIIGDTF 303 (325)
T ss_dssp EECSCG------GGCCCEEEEETT--EEEEECGGGGEEEE---------E-TTEEEESEEEES-------SSSEEECHHH
T ss_pred EEECCC------CCCCcEEEEECC--EEEEECHHHEEEcC---------C-CCeEEEEEEcCC-------CCCEEECHHH
Confidence 114552 238999999987 69999999999863 1 4689964 4322 2369999999
Q ss_pred eeccEEEEeCCCCEEEEEcCC
Q 011401 455 QQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 455 l~~~~vvfD~~~~rIGfa~~~ 475 (486)
||++|+|||++++|||||+++
T Consensus 304 l~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 304 LKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp HTTEEEEEETTTTEEEEEEBC
T ss_pred hcceEEEEECCCCEEEEEecC
Confidence 999999999999999999864
No 20
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=6.8e-55 Score=439.08 Aligned_cols=313 Identities=21% Similarity=0.381 Sum_probs=249.3
Q ss_pred ccccCC-CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCc---------ccccCCCCCCCCCCCCCCCcccccC
Q 011401 65 VSLPLS-PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFEC---------ILCENKQEKPAPPLNISSTATKVSC 134 (486)
Q Consensus 65 ~~~p~~-~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C---------~~C~~~~~~~~f~~~~SsT~~~~~c 134 (486)
+.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+..| ..|.. .+.|+|++|+|++..+|
T Consensus 3 v~~~l~~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~---~~~y~~~~SsT~~~~~~ 78 (342)
T 3pvk_A 3 VPVTLHNEQVTYAADITVGSN-NQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQ---KGTYDPSGSSASQDLNT 78 (342)
T ss_dssp EEEEEEECSSSEEEEEEETTT-TEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGT---TCCBCGGGCTTCEEEEE
T ss_pred cceEEecCCcEEEEEEEEcCC-CcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCC---CCcCCCccCcceeecCC
Confidence 445665 46789999999999 999999999999999998542113 45753 45899999999986542
Q ss_pred CCcccccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEece
Q 011401 135 KSPACSAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCA 213 (486)
Q Consensus 135 ~~~~C~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~ 213 (486)
. |.+.|++|+ +.|.+++|+|+|++ +.++++.|||+
T Consensus 79 --------------------------------------~-~~i~Yg~gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~ 114 (342)
T 3pvk_A 79 --------------------------------------P-FKIGYGDGSSSQGTLYKDTVGFGG-----VSIKNQVLADV 114 (342)
T ss_dssp --------------------------------------E-EEEECSSSCEEEEEEEEEEEEETT-----EEEEEEEEEEE
T ss_pred --------------------------------------e-EEEEecCCCeEEEEEEEEEEEECC-----EEecceEEEEE
Confidence 3 999999998 59999999999998 78999999999
Q ss_pred ecCCCCcceeeecCCCC-------CchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCC
Q 011401 214 HTTLGEPIGVAGFGRGL-------LSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAE 286 (486)
Q Consensus 214 ~~~~~~~~GIlGLg~~~-------~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~ 286 (486)
+... ..+||||||++. .+++.+|.+|+.+.+++||+||.+.. . ..|.|+||++|+.+ +.++
T Consensus 115 ~~~~-~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~----~--~~G~l~fGg~d~~~-----~~g~ 182 (342)
T 3pvk_A 115 DSTS-IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPD----A--ATGQIIFGGVDNAK-----YSGS 182 (342)
T ss_dssp EEES-SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTT----C--SEEEEEETEEETTS-----BSSC
T ss_pred EccC-CCccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCC----C--CCcEEEECccCccc-----eeee
Confidence 8765 489999999986 47999999988888899999997642 1 46999999999874 8899
Q ss_pred eeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccc
Q 011401 287 FVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHER 366 (486)
Q Consensus 287 l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~ 366 (486)
+.|+|+... .+|.|.+++|+|+++.+... ...+||||||++++||+++|++|.++|.+.... ..
T Consensus 183 l~~~p~~~~----~~~~v~l~~i~v~g~~~~~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~--~~ 246 (342)
T 3pvk_A 183 LIALPVTSD----RELRISLGSVEVSGKTINTD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQ--DS 246 (342)
T ss_dssp CEEEECCCS----SSCEEEEEEEEETTEEEEEE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEE--CT
T ss_pred eEEeecCcc----ceEEEEEeEEEECCEEecCC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeecc--cC
Confidence 999999864 37999999999999987642 247999999999999999999999988654321 00
Q ss_pred cccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCC
Q 011401 367 ASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGG 445 (486)
Q Consensus 367 ~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~ 445 (486)
.+ ..+|..+|.. .|.|+|+|++| .+++||+++|+++.... .......|+. +...
T Consensus 247 -------~~-~~~~~~~C~~---~p~i~f~f~~g-~~~~vp~~~~~~~~~~~----~g~~~~~C~~~i~~~--------- 301 (342)
T 3pvk_A 247 -------NG-NSFYEVDCNL---SGDVVFNFSKN-AKISVPASEFAASLQGD----DGQPYDKCQLLFDVN--------- 301 (342)
T ss_dssp -------TS-CEEEEECSCC---CSEEEEEESTT-CEEEEEGGGGEEC--------------CEEESEEEC---------
T ss_pred -------CC-ceEEEEecCC---CCceEEEECCC-CEEEEcHHHheeecccc----CCCcCCeeEEEEeeC---------
Confidence 00 1134444432 59999999866 89999999999873210 0011257984 4432
Q ss_pred CceeechhheeccEEEEeCCCCEEEEEcCCCch
Q 011401 446 PGATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478 (486)
Q Consensus 446 ~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~ 478 (486)
+.||||+.|||++|+|||++++|||||+++|+.
T Consensus 302 ~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~ 334 (342)
T 3pvk_A 302 DANILGDNFLRSAYIVYDLDDNEISLAQVKYTS 334 (342)
T ss_dssp TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCS
T ss_pred CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCC
Confidence 269999999999999999999999999999984
No 21
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=6.2e-54 Score=437.95 Aligned_cols=347 Identities=26% Similarity=0.425 Sum_probs=253.0
Q ss_pred ccccCC---CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccccc
Q 011401 65 VSLPLS---PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSA 141 (486)
Q Consensus 65 ~~~p~~---~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~ 141 (486)
+.+|+. .+.+|+++|.|||| |+|||||+++||+|.+ | .+|+.++|.++.|..
T Consensus 3 ~~~pv~~~~~~~~Y~~~i~iGtP------v~~DTGSs~lWv~c~~--~-----------------~~~~~~~C~s~~C~~ 57 (381)
T 1t6e_X 3 VLAPVTKDPATSLYTIPFHDGAS------LVLDVAGPLVWSTCDG--G-----------------QPPAEIPCSSPTCLL 57 (381)
T ss_dssp EEEEEEECTTTCCEEEEEETTEE------EEEETTCCCEEECCCT--T-----------------CCCCCCBTTSHHHHH
T ss_pred eEEeEEecCCCcEEEEEEeCCCE------EEEECCCCceEEeCCC--C-----------------CCCCccCCCCchhcc
Confidence 344554 46789999999993 9999999999999875 3 136678898888876
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCcee-EeEEEEEEEEeccCCCCceeecce----EEeceecC
Q 011401 142 AHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSL-VARLYKDSLSMPVSSQKSLVLHNF----TFGCAHTT 216 (486)
Q Consensus 142 ~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~-~G~l~~D~v~~~~~~~~~~~~~~~----~FG~~~~~ 216 (486)
...... ..|..... ...|.+..|.+|.+.||||+. .|.+++|+|+|++.++. ..++++ .|||+..+
T Consensus 58 ~~~~~~-------~sc~~~~~-~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~-~~v~~~~~~~~Fg~~~~~ 128 (381)
T 1t6e_X 58 ANAYPA-------PGCPAPSC-GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS-KPVSKVNVGVLAACAPSK 128 (381)
T ss_dssp HHSSCC-------TTCCCCCC-------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSS-SEEEEEEEEEEEEECCGG
T ss_pred ccCCCC-------CCCCCccC-CcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCC-ccccceeeeeEeecCccc
Confidence 433211 12221000 001234567239999999996 89999999999863221 344443 67999875
Q ss_pred --C---CCcceeeecCCCCCchHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEee
Q 011401 217 --L---GEPIGVAGFGRGLLSFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTD 291 (486)
Q Consensus 217 --~---~~~~GIlGLg~~~~Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tp 291 (486)
. ..+|||||||++.+|++.||+.++ +.+++||+||.+. .+|.|+||+++... .++.+++.|+|
T Consensus 129 ~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~-~~~~~FS~~L~~~--------~~G~l~fGg~~~~~---~~~~g~l~~tP 196 (381)
T 1t6e_X 129 LLASLPRGSTGVAGLANSGLALPAQVASAQ-KVANRFLLCLPTG--------GPGVAIFGGGPVPW---PQFTQSMPYTP 196 (381)
T ss_dssp GGTTSCTTEEEEEECSSSTTSHHHHHHHHH-TCCSEEEEECCSS--------SCEEEEESCCSCSC---HHHHTTCCEEE
T ss_pred ccCCCCCCCceEEEeCCCcchhHHHHhhhc-ccCceEEEEeCCC--------CCeeEEeCCccccc---ccccCcceeec
Confidence 2 258999999999999999999876 5689999999863 46999999986520 01578999999
Q ss_pred cccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhc------ccc
Q 011401 292 MLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGR------VHE 365 (486)
Q Consensus 292 l~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~------~~~ 365 (486)
|+.++..+ +|+|.|++|+||++.+.++...|. .+++||||||++++||+++|++|+++|.+++.. .+.
T Consensus 197 l~~~~~~~-~y~v~l~~i~vg~~~~~~~~~~~~-----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~ 270 (381)
T 1t6e_X 197 LVTKGGSP-AHYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVA 270 (381)
T ss_dssp CBCCTTCC-SCEECEEEEEETTEECCCCTTCSC-----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------C
T ss_pred cccCCCCc-ceEEEEEEEEEcCEEecCCHHHcc-----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhccccccccccc
Confidence 99764433 577999999999998877654431 468999999999999999999999999887641 122
Q ss_pred ccccccccCCCCCcccccCcc----ccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCc-
Q 011401 366 RASQIEEKTGLSPCYYFDQVV----KGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEE- 440 (486)
Q Consensus 366 ~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~- 440 (486)
+.. .....+..||+.++.. ...+|+|+|+|+|+ ++|+|++++|+++.. .+..|++|+......
T Consensus 271 ~~~--~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg-~~~~l~~~~y~~~~~---------~~~~Cl~~~~~~~~~~ 338 (381)
T 1t6e_X 271 RAV--EAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGG-SDWTMTGKNSMVDVK---------QGTACVAFVEMKGVAA 338 (381)
T ss_dssp CEE--CCCTTCSCEEEGGGCCEETTEECCCCEEEEETTS-CEEEECHHHHEEEEE---------TTEEEESEEECCCCC-
T ss_pred ccC--CCCCCCCccCCCCCCcccccCCcCCeEEEEECCC-cEEEeCCCeEEEEcC---------CCeEEEEEEcCCCccc
Confidence 220 1123457899876421 12589999999877 999999999998742 357899988643210
Q ss_pred ccCCCCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 441 ELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 441 ~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
....++.||||+.|||++|+|||++|+|||||++.
T Consensus 339 ~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp -----CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred ccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 00012579999999999999999999999999864
No 22
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=9.5e-54 Score=446.38 Aligned_cols=332 Identities=19% Similarity=0.293 Sum_probs=252.8
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcc
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSD 150 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~ 150 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.+ | |.. .+.|+|++|+||+...|
T Consensus 72 ~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWV~~~~--c--c~~---~~~y~~~~SsT~~~~~~---------------- 127 (455)
T 3lpj_A 72 SGQGYYVEMTVGSP-PQTLNILVDTGSSNFAVGAAP--H--PFL---HRYYQRQLSSTYRDLRK---------------- 127 (455)
T ss_dssp TTTEEEEEEEETTT-TEEEEEEEETTCCCEEEECSC--C--TTC---SCCCCGGGCTTCEEEEE----------------
T ss_pred CCCEEEEEEEECCC-CeEEEEEEcCCCcceEEeccc--c--ccc---CCcccCCCCCCcccCCc----------------
Confidence 46689999999999 999999999999999999987 5 432 45899999999986542
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC------CCcceee
Q 011401 151 LCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------GEPIGVA 224 (486)
Q Consensus 151 ~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------~~~~GIl 224 (486)
. |.+.|++|++.|.+++|+|+|++.. .+.+ .+.|+|+.... ...+|||
T Consensus 128 ----------------------~-~~i~Yg~Gs~~G~~~~Dtv~ig~~~--~~~~-~~~~~~~~~~~~~~~~~~~~dGIl 181 (455)
T 3lpj_A 128 ----------------------G-VYVPYTQGKWEGELGTDLVSIPHGP--NVTV-RANIAAITESDKFFINGSNWEGIL 181 (455)
T ss_dssp ----------------------E-EEEECSSCEEEEEEEEEEEECTTSC--SCEE-EEEEEEEEEEESCSCTTCCCCEEE
T ss_pred ----------------------c-EEEEeCCeEEEEEEEEEEEEECCCc--ceee-EEEEEEEEccCcccccCCCcceEE
Confidence 3 9999999999999999999998521 1222 36788876542 2479999
Q ss_pred ecCCCCC--------chHhhhcccCCCCCCceEEeccCCCCCCCC----CCCCcceeecccccccccccCCCCCeeEeec
Q 011401 225 GFGRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFDSNR----TRLPSPLILGRYEDKEKRVNSEEAEFVYTDM 292 (486)
Q Consensus 225 GLg~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~----~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl 292 (486)
|||++.+ +++.+|.+|+.+. ++||+||.+.....+. ....|.|+||++|+.+ +.+++.|+|+
T Consensus 182 GLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~-----~~g~l~~~p~ 255 (455)
T 3lpj_A 182 GLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSL-----YTGSLWYTPI 255 (455)
T ss_dssp ECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGG-----EEEEEEEEEC
T ss_pred EeCccccccccCCCCcHHHHHHHccCCC-ceeEEEeccccccccccccccCCCceEEECCcCccc-----ccCceEEEec
Confidence 9998754 5677899887765 8999999763211000 0157999999999875 8899999999
Q ss_pred ccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccc
Q 011401 293 LDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEE 372 (486)
Q Consensus 293 ~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~ 372 (486)
... .+|.|.+++|+|+++.+.++...+ +...+||||||++++||+++|++|.++|.+.... .+.....-
T Consensus 256 ~~~----~~w~v~l~~i~v~g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~--~~~~~~~~ 324 (455)
T 3lpj_A 256 RRE----WYYEVIIVRVEINGQDLKMDCKEY-----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPDGFW 324 (455)
T ss_dssp CSB----TTBBCCEEEEEETTEECCCCGGGG-----GSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTT--SCCCHHHH
T ss_pred CCC----ceeEEEEeEEEECCEEcccccccc-----CCCeEEEECCCcceeCCHHHHHHHHHHhhhhccc--cccCcccc
Confidence 863 589999999999999887654322 2458999999999999999999999999987531 11110000
Q ss_pred cCCCCCcccccCccccCCCeEEEEEeCC----eeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCce
Q 011401 373 KTGLSPCYYFDQVVKGNVPTVELHFVGS----NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPGA 448 (486)
Q Consensus 373 ~~~~~~C~~~~~~~~~~~P~i~~~f~gg----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~~ 448 (486)
......|+.........+|+|+|+|+|+ ..+|+|+|++|+++..+. ......|+++..... ...|
T Consensus 325 ~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~-----~~~~~~C~~f~~~~~------~~~~ 393 (455)
T 3lpj_A 325 LGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV-----ATSQDDCYKFAISQS------STGT 393 (455)
T ss_dssp TTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCT-----TCCSCEEEEECEEEE------SSCE
T ss_pred cCcceecccccCCchhcCCcEEEEEcCCCcCceEEEEECHHHheEeccCC-----CCCCceEEEEeccCC------CCcE
Confidence 0113579886543334599999999984 125999999999875420 011258997432111 2469
Q ss_pred eechhheeccEEEEeCCCCEEEEEcCCCchhH
Q 011401 449 TLGNYQQQGFEVVYDLEKGKVGFARRQCASLW 480 (486)
Q Consensus 449 ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~~ 480 (486)
|||+.|||++|+|||++++|||||+++|+..+
T Consensus 394 ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~ 425 (455)
T 3lpj_A 394 VMGAVIMEGFYVVFDRARKRIGFAVSACHVHD 425 (455)
T ss_dssp EECHHHHTTEEEEEETTTTEEEEEEETTCCCC
T ss_pred EEChHHhCCeEEEEECCCCEEEEEeccccccc
Confidence 99999999999999999999999999998764
No 23
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=5.1e-54 Score=437.00 Aligned_cols=305 Identities=21% Similarity=0.313 Sum_probs=249.0
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
...+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 51 ~~~~pl~~~~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~C~~~---~~y~~~~SsT~~~~~------ 118 (375)
T 1miq_A 51 NDVIELDDVANIMFYGEGEVGDN-HQKFMLIFDTGSANLWVPSKK--CNSSGCSIK---NLYDSSKSKSYEKDG------ 118 (375)
T ss_dssp TBCCCGGGTBCEEEECCCEETTT-TEECCEEEETTCCCEEEEBTT--CCSSGGGGS---CCBCGGGCTTCEEEE------
T ss_pred cceEEcccCCCCEEEEEEEECCC-CeEEEEEEeCCCcceEEccCC--CCcccccCC---CcCCCccCCceEECC------
Confidence 3446776 36789999999999 999999999999999999998 75 68654 589999999998643
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceec----
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHT---- 215 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~---- 215 (486)
|. |.+.|++|++.|.+++|+|+|++ +.+++ .|||+..
T Consensus 119 --------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~ig~-----~~v~~-~Fg~~~~~~~~ 159 (375)
T 1miq_A 119 --------------------------------TK-VDITYGSGTVKGFFSKDLVTLGH-----LSMPY-KFIEVTDTDDL 159 (375)
T ss_dssp --------------------------------EE-EEEEETTEEEEEEEEEEEEEETT-----EEEEE-EEEEEEECGGG
T ss_pred --------------------------------cE-EEEEeCCCeEEEEEEEEEEEEcC-----ceECc-EEEEEEecccc
Confidence 23 99999999999999999999998 78899 9999998
Q ss_pred CC----CCcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCC
Q 011401 216 TL----GEPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEA 285 (486)
Q Consensus 216 ~~----~~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~ 285 (486)
.. ...+||||||++.+ +++.+|.+|+.+.+++||+||.+.. . .+|.|+||++|+.+ +.+
T Consensus 160 ~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~----~--~~G~l~fGg~d~~~-----~~g 228 (375)
T 1miq_A 160 EPIYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD----V--HAGYLTIGGIEEKF-----YEG 228 (375)
T ss_dssp TTHHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTC----T--TEEEEEESSCCGGG-----EEE
T ss_pred ccccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCC----C--CCeEEEEcccCHHH-----cCC
Confidence 32 35899999999865 4678899888788899999998741 1 47999999999875 789
Q ss_pred CeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccc
Q 011401 286 EFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHE 365 (486)
Q Consensus 286 ~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 365 (486)
++.|+|+... .+|.|.++ |+||++.+ . ...+||||||++++||+++|++|.+++.+....
T Consensus 229 ~l~~~p~~~~----~~w~v~l~-i~v~g~~~----~--------~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~--- 288 (375)
T 1miq_A 229 NITYEKLNHD----LYWQIDLD-VHFGKQTM----E--------KANVIVDSGTTTITAPSEFLNKFFANLNVIKVP--- 288 (375)
T ss_dssp EEEEEEBSSS----SSSEEEEE-EEETTEEE----E--------EEEEEECTTBSSEEECHHHHHHHHHHHTCEECT---
T ss_pred ceEEEecCCC----ceEEEEEE-EEECCEEc----c--------cceEEecCCCccEEcCHHHHHHHHHHhCCcccC---
Confidence 9999999753 58999999 99999876 1 347999999999999999999999988643211
Q ss_pred ccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCC
Q 011401 366 RASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSG 444 (486)
Q Consensus 366 ~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~ 444 (486)
.. ......|+. ..+|+|+|+|+| ++|+|++++|+++... .+...|+ +|+.....
T Consensus 289 -~~----g~~~~~C~~------~~~P~i~f~f~g--~~~~l~~~~yi~~~~~-------~g~~~C~~~~~~~~~~----- 343 (375)
T 1miq_A 289 -FL----PFYVTTCDN------KEMPTLEFKSAN--NTYTLEPEYYMNPILE-------VDDTLCMITMLPVDID----- 343 (375)
T ss_dssp -TS----SCEEEETTC------TTCCCEEEECSS--CEEEECGGGSEEESSS-------SSCSEEEESEEECCSS-----
T ss_pred -CC----CeEEEECCC------CCCCcEEEEECC--EEEEECHHHhEeeccC-------CCCCeEEEEEEECCCC-----
Confidence 00 001124654 348999999976 9999999999987421 1346898 77754321
Q ss_pred CCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 445 GPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 445 ~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
...||||+.|||++|+|||++++|||||+++
T Consensus 344 ~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 344 SNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 1479999999999999999999999999864
No 24
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=7.4e-54 Score=438.05 Aligned_cols=327 Identities=19% Similarity=0.269 Sum_probs=248.8
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcc
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSD 150 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~ 150 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.+ |..|. +.|+|++|+||+...|
T Consensus 11 ~~~~Y~~~i~iGTP-~q~~~v~~DTGSs~lWv~~~~--c~~~~-----~~f~~~~SsT~~~~~~---------------- 66 (383)
T 2ewy_A 11 SGRGYYLEMLIGTP-PQKLQILVDTGSSNFAVAGTP--HSYID-----TYFDTERSSTYRSKGF---------------- 66 (383)
T ss_dssp TTTEEEEEEEETTT-TEEEEEEEETTCCCEEEECSC--BTTBS-----CCCCGGGCTTCEEEEE----------------
T ss_pred CCCcEEEEEEecCC-CceEEEEEecCCCceEEecCC--CCccc-----cCcccccCccceeCCc----------------
Confidence 45689999999999 999999999999999999988 76663 5899999999986542
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC------CCcceee
Q 011401 151 LCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------GEPIGVA 224 (486)
Q Consensus 151 ~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------~~~~GIl 224 (486)
. |.+.|++|++.|.+++|+|+|++.. .....+.|+|..... ...+|||
T Consensus 67 ----------------------~-~~i~Yg~Gs~~G~~~~Dtv~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dGil 120 (383)
T 2ewy_A 67 ----------------------D-VTVKYTQGSWTGFVGEDLVTIPKGF---NTSFLVNIATIFESENFFLPGIKWNGIL 120 (383)
T ss_dssp ----------------------E-EEEECSSCEEEEEEEEEEEEETTTE---EEEEEEEEEEEEEEESCSCTTCCCCEEE
T ss_pred ----------------------e-EEEEECCcEEEEEEEEEEEEECCCc---cceeEEEEEEEEeecceeeccCcCceEE
Confidence 3 9999999999999999999998621 111136788875432 2479999
Q ss_pred ecCCCCCc--------hHhhhcccCCCCCCceEEeccCCCCCC-CCCCCCcceeecccccccccccCCCCCeeEeecccC
Q 011401 225 GFGRGLLS--------FPAQLASLSPHLGNRFSYCLVSHSFDS-NRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDMLDN 295 (486)
Q Consensus 225 GLg~~~~S--------l~~ql~~~~~~~~~~FS~cL~~~~~~~-~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~~~ 295 (486)
|||++.++ ++.+|.+|+.+ +++||+||.+..... ......|.|+||++|+.+ +.+++.|+|+...
T Consensus 121 GLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~-----~~g~l~~~p~~~~ 194 (383)
T 2ewy_A 121 GLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSL-----YKGDIWYTPIKEE 194 (383)
T ss_dssp ECSCGGGCSSCTTSCCHHHHHHHHHTC-CSCEEEEECCC---------CCEEEEETSCCGGG-----CCSCEEEEECSSB
T ss_pred ecCchhcccccccccCHHHHHHHccCC-CcceEEEeeccccccccCCCCCeEEEeCccchhh-----ccCccEEEecCCC
Confidence 99997653 55688887766 799999996421100 000157999999999875 8899999999863
Q ss_pred CCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccc-cC
Q 011401 296 PKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEE-KT 374 (486)
Q Consensus 296 ~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~-~~ 374 (486)
.+|.|.+++|+||++.+.++...+ ....+||||||++++||+++|++|+++|.+.... .+.+. .. ..
T Consensus 195 ----~~~~v~l~~i~v~g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~--~~~~~-~~~~~ 262 (383)
T 2ewy_A 195 ----WYYQIEILKLEIGGQSLNLDCREY-----NADKAIVDSGTTLLRLPQKVFDAVVEAVARASLI--PEFSD-GFWTG 262 (383)
T ss_dssp ----TTBBCCEEEEEETTEECCCCTTTT-----TSSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCS--SCCCH-HHHHT
T ss_pred ----ceEEEEEEEEEECCEEcccccccc-----CCccEEEEcCCccccCCHHHHHHHHHHHhhhccc--ccCcc-ccccc
Confidence 579999999999999887654332 1358999999999999999999999999876431 11100 00 01
Q ss_pred CCCCcccccCccccCCCeEEEEEeCC----eeEEEeCCcceeEEccccCCCcccCCceEEEEE--EeCCCCcccCCCCce
Q 011401 375 GLSPCYYFDQVVKGNVPTVELHFVGS----NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLML--MNGGDEEELSGGPGA 448 (486)
Q Consensus 375 ~~~~C~~~~~~~~~~~P~i~~~f~gg----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i--~~~~~~~~~~~~~~~ 448 (486)
....|+.........+|+|+|+|+|+ .++|+|++++|+++..+ ...+..|+++ ... ...|
T Consensus 263 ~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~------~~~~~~C~~~~i~~~--------~~~~ 328 (383)
T 2ewy_A 263 SQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMG------AGLNYECYRFGISPS--------TNAL 328 (383)
T ss_dssp SEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECC------CTTCSEEEEESEEEE--------SSCE
T ss_pred cccccccCCcccHhhCCcEEEEECCCCCCceEEEEEChHHheeeccc------CCCCceeEEEEecCC--------CCcE
Confidence 12468876543333589999999874 14799999999987431 1234679864 321 1369
Q ss_pred eechhheeccEEEEeCCCCEEEEEcCCCchh
Q 011401 449 TLGNYQQQGFEVVYDLEKGKVGFARRQCASL 479 (486)
Q Consensus 449 ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~ 479 (486)
|||+.|||++|+|||++++|||||+++|+..
T Consensus 329 ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~ 359 (383)
T 2ewy_A 329 VIGATVMEGFYVIFDRAQKRVGFAASPCAEI 359 (383)
T ss_dssp EECHHHHTTEEEEEETTTTEEEEEECTTCBS
T ss_pred EEChHHhCCeeEEEECCCCeEEEEeccCCCc
Confidence 9999999999999999999999999999865
No 25
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=1e-53 Score=427.95 Aligned_cols=306 Identities=15% Similarity=0.175 Sum_probs=245.6
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
.+..|+. .+.+|+++|.|| | |++.|+|||||+++||+|.+ |. .|.. ...+.|+|++| |++...
T Consensus 6 ~~~~~l~n~~~~~Y~~~i~iG-~--Q~~~v~~DTGSs~lWv~~~~--C~~~~C~~-~~~~~y~~~~S-T~~~~~------ 72 (330)
T 1yg9_A 6 PLYKLVHVFINTQYAGITKIG-N--QNFLTVFDSTSCNVVVASQE--CVGGACVC-PNLQKYEKLKP-KYISDG------ 72 (330)
T ss_dssp CSCSCEEEEECTTSEEEEEET-T--EEEEEEEETTCCCEEEECTT--CCSGGGGS-TTCCCCCCSSC-EEEEEE------
T ss_pred eeEeeeecCCCCEEEEEEEEC-C--EEEEEEEeCCCcceEEecCC--CCCccCcc-cccCccCCCCC-ceEECC------
Confidence 3445555 367899999999 8 99999999999999999998 85 6831 12468999999 998532
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC-
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG- 218 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ ++++++.|||+.....
T Consensus 73 --------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~ig~-----~~~~~~~fg~~~~~~~~ 114 (330)
T 1yg9_A 73 --------------------------------NV-QVKFFDTGSAVGRGIEDSLTISQ-----LTTSQQDIVLADELSQE 114 (330)
T ss_dssp --------------------------------EE-EEEETTTEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECTH
T ss_pred --------------------------------CE-EEEEECCceEEEEEEEEEEEECC-----EEEcCeEEEEEEEcccc
Confidence 23 99999999999999999999998 7899999999997632
Q ss_pred ----CcceeeecCCCCCc-------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCe
Q 011401 219 ----EPIGVAGFGRGLLS-------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEF 287 (486)
Q Consensus 219 ----~~~GIlGLg~~~~S-------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l 287 (486)
..+||||||++.++ ++.+|.+|+.+ +++||+||.+... . ...|.|+||++|+.+ +.+++
T Consensus 115 f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-~~~FS~~l~~~~~-~---~~~G~l~fGg~d~~~-----~~g~l 184 (330)
T 1yg9_A 115 VCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-APVFSIHHARFQD-G---EHFGEIIFGGSDWKY-----VDGEF 184 (330)
T ss_dssp HHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-CSEEEEEEEECTT-S---CEEEEEEETSCCGGG-----EEEEE
T ss_pred cccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-CceEEEEEcCCCC-C---CCCCEEEECCcCHHH-----ccCce
Confidence 47999999998776 78899988878 9999999987421 1 037999999999875 78999
Q ss_pred eEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccc
Q 011401 288 VYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERA 367 (486)
Q Consensus 288 ~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~ 367 (486)
.|+|+.. ..+|.|.+++|+|+++.+. . .+..+||||||++++||+++|++|.+++.+....
T Consensus 185 ~~~p~~~----~~~w~v~l~~i~v~~~~~~-~---------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~----- 245 (330)
T 1yg9_A 185 TYVPLVG----DDSWKFRLDGVKIGDTTVA-P---------AGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEK----- 245 (330)
T ss_dssp EEEEBSC----TTSCCEECSEEEETTEEEE-C---------TTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEE-----
T ss_pred EEEECCC----CCEEEEEeCeEEECCEEEc-C---------CCcEEEEecCCccccCCHHHHHHHHHHhCCcccC-----
Confidence 9999984 3589999999999998764 1 2357999999999999999999999988543210
Q ss_pred ccccccCCCCCcc-cccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCC
Q 011401 368 SQIEEKTGLSPCY-YFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGG 445 (486)
Q Consensus 368 ~~~~~~~~~~~C~-~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~ 445 (486)
.+ ...| ..+|.....+|+|+|+|+| ++|+|++++|+++. +..|+ +|..... +
T Consensus 246 ------~g-~~~~~~~~C~~~~~~p~i~f~fgg--~~~~l~~~~y~~~~-----------~~~C~~~i~~~~~------~ 299 (330)
T 1yg9_A 246 ------TT-TRRICKLDCSKIPSLPDVTFVING--RNFNISSQYYIQQN-----------GNLCYSGFQPCGH------S 299 (330)
T ss_dssp ------CS-SCEEEEECGGGGGGSCCEEEEETT--EEEEECHHHHEEEE-----------TTEEEESEEEETT------C
T ss_pred ------CC-ceEEEEEECCCccccCcEEEEECC--EEEEECHHHhcccC-----------CCcEEEEEEeCCC------C
Confidence 01 0022 3333333358999999976 99999999999872 35799 5664321 3
Q ss_pred CceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 446 PGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 446 ~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
+.||||+.|||++|+|||++++|||||+++
T Consensus 300 ~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 300 DHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp SSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 479999999999999999999999999864
No 26
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=8.3e-54 Score=442.79 Aligned_cols=304 Identities=21% Similarity=0.292 Sum_probs=246.8
Q ss_pred ccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc--cccCCCCCCCCCCCCCCCcccccCCCcccc
Q 011401 65 VSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI--LCENKQEKPAPPLNISSTATKVSCKSPACS 140 (486)
Q Consensus 65 ~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~--~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~ 140 (486)
..+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 128 ~~~~L~n~~~~~Y~~~I~IGTP-~Q~~~vi~DTGSs~lWV~~~~--C~~~~C~~~---~~ydps~SsT~~~~~------- 194 (453)
T 2bju_A 128 DNIELVDFQNIMFYGDAEVGDN-QQPFTFILDTGSANLWVPSVK--CTTAGCLTK---HLYDSSKSRTYEKDG------- 194 (453)
T ss_dssp EEEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSTTGGGS---CCBCGGGCTTCEEEE-------
T ss_pred CceeeEecCCCEEEEEEEECCC-CeEEEEEEECCCcceEEeccC--CCccccCCC---CcCCCccCCceeECC-------
Confidence 446665 57899999999999 999999999999999999998 75 68653 589999999998643
Q ss_pred cccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC--C
Q 011401 141 AAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL--G 218 (486)
Q Consensus 141 ~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~--~ 218 (486)
|. |.+.||+|++.|.+++|+|+|++ ++++ +.|||++... +
T Consensus 195 -------------------------------~~-~~i~YgdGs~~G~~~~Dtv~ig~-----~~v~-~~Fg~a~~~~~~g 236 (453)
T 2bju_A 195 -------------------------------TK-VEMNYVSGTVSGFFSKDLVTVGN-----LSLP-YKFIEVIDTNGFE 236 (453)
T ss_dssp -------------------------------EE-EEEECSSSEEEEEEEEEEEEETT-----EEEE-EEEEEEEECGGGT
T ss_pred -------------------------------cE-EEEEcCCCCeEEEEEEEEEEEeC-----cEEE-EEEEEEEEecccC
Confidence 33 99999999999999999999998 7888 9999999875 3
Q ss_pred ------CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCC
Q 011401 219 ------EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAE 286 (486)
Q Consensus 219 ------~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~ 286 (486)
..+||||||++.+ +++.+|.+|+.+.+++||+||.+.. . .+|.|+||++|+.+ +.++
T Consensus 237 ~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~----~--~~G~l~fGg~D~~~-----y~G~ 305 (453)
T 2bju_A 237 PTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHD----K--HTGFLTIGGIEERF-----YEGP 305 (453)
T ss_dssp THHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTT----T--BCEEEEESSCCGGG-----EEEE
T ss_pred ccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCC----C--CCeEEEECCCCHHH-----cCCc
Confidence 4899999999764 4678899888788899999998741 1 57999999999875 7899
Q ss_pred eeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccc
Q 011401 287 FVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHER 366 (486)
Q Consensus 287 l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~ 366 (486)
+.|+|+... .+|.|.++ |+||+ .+ + ....+||||||++++||+++|++|.+++.+.. .
T Consensus 306 l~~~pv~~~----~~w~V~l~-I~Vgg-~~-~----------~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~-----~ 363 (453)
T 2bju_A 306 LTYEKLNHD----LYWQITLD-AHVGN-IM-L----------EKANCIVDSGTSAITVPTDFLNKMLQNLDVIK-----V 363 (453)
T ss_dssp EEEEEEEEE----TTEEEEEE-EEETT-EE-E----------EEEEEEECTTCCSEEECHHHHHHHTTTSSCEE-----C
T ss_pred eEEEecCCC----ceEEEEEE-EEECc-EE-e----------ccccEEEcCCCCeEecCHHHHHHHHHHhCCcc-----c
Confidence 999999753 58999999 99999 33 1 13579999999999999999999988774321 0
Q ss_pred cccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCC
Q 011401 367 ASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGG 445 (486)
Q Consensus 367 ~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~ 445 (486)
..+ ..|..+|.. ..+|+|+|+|+| ++|+|++++|+++... .++..|+ +|...... .
T Consensus 364 ------~~g--~~~~v~C~~-~~~P~itf~fgg--~~~~l~~~~yi~~~~~-------~g~~~C~~~~~~~~~~-----~ 420 (453)
T 2bju_A 364 ------PFL--PFYVTLCNN-SKLPTFEFTSEN--GKYTLEPEYYLQHIED-------VGPGLCMLNIIGLDFP-----V 420 (453)
T ss_dssp ------TTS--SCEEEETTC-TTCCCEEEECSS--CEEEECHHHHEEECTT-------TSTTEEEECEEECCCS-----S
T ss_pred ------CCC--ceEEEecCC-CCCCcEEEEECC--EEEEECHHHhEeeccc-------CCCceEEEEEEeCCCC-----C
Confidence 001 023333332 348999999976 9999999999987421 1346899 67754321 2
Q ss_pred CceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 446 PGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 446 ~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
+.||||+.|||++|+|||++++|||||+++
T Consensus 421 ~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 421 PTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp CEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 479999999999999999999999999875
No 27
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=7.3e-53 Score=421.06 Aligned_cols=304 Identities=18% Similarity=0.263 Sum_probs=240.7
Q ss_pred cccccCCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccccccc
Q 011401 64 QVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAH 143 (486)
Q Consensus 64 ~~~~p~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~ 143 (486)
+...|+..+.+|+++|.|| | |++.|+|||||+++||+|.+ |..|..+ ..+.|+|++|+ ++.
T Consensus 5 v~~~~~~~~~~Y~~~i~iG-~--Q~~~v~~DTGSs~lWv~~~~--C~~~~c~-~~~~y~~~~Ss-~~~------------ 65 (325)
T 1ibq_A 5 AVTTPQNNDEEYLTPVTVG-K--STLHLDFDTGSADLWVFSDE--LPSSEQT-GHDLYTPSSSA-TKL------------ 65 (325)
T ss_dssp EEEEECTTTSCEEEEEEEB-T--EEEEEEEETTCCCEEEECTT--SCHHHHT-TSCCCBCCSSC-EEC------------
T ss_pred EEeEEcCCCCEEEEEEEEC-C--EEEEEEEeCCCccceEeeCC--CCccccC-CCCCCCchhcC-Ccc------------
Confidence 3445666788999999999 8 99999999999999999998 8776432 35689999998 541
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCCC----
Q 011401 144 SSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG---- 218 (486)
Q Consensus 144 ~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~---- 218 (486)
..|. |.+.|++|+ +.|.+++|+|+|++ +.++++.|||+....+
T Consensus 66 --------------------------~~~~-~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~ 113 (325)
T 1ibq_A 66 --------------------------SGYS-WDISYGDGSSASGDVYRDTVTVGG-----VTTNKQAVEAASKISSEFVQ 113 (325)
T ss_dssp --------------------------TTCB-EEEECSSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHT
T ss_pred --------------------------CCCE-EEEEeCCCCEEEEEEEEeEEEECC-----EEEcceEEEEEEecCccccc
Confidence 1244 999999998 59999999999998 7899999999997542
Q ss_pred --CcceeeecCCCCCc---------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCe
Q 011401 219 --EPIGVAGFGRGLLS---------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEF 287 (486)
Q Consensus 219 --~~~GIlGLg~~~~S---------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l 287 (486)
..+||||||++.++ ++.||.++ +.+++||+||.+. ..|.|+||++|+.+ +.+++
T Consensus 114 ~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~l~~~--------~~G~l~fGg~d~~~-----~~g~l 178 (325)
T 1ibq_A 114 DTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKHD--------APGVYDFGYIDDSK-----YTGSI 178 (325)
T ss_dssp STTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEEEETT--------EEEEEEESSCCGGG-----BSSCC
T ss_pred cCCCceEEEeCcccccccCcCCCCCHHHHHHHh--cCCcEEEEEecCC--------CCceEEECCcChhh-----ccCce
Confidence 57999999997654 56888874 6789999999863 46999999999875 88999
Q ss_pred eEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccc
Q 011401 288 VYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERA 367 (486)
Q Consensus 288 ~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~ 367 (486)
.|+|+... ..+|.|.+++|+|+++.+.. ....+||||||++++||+++|++|.++|.+... ...
T Consensus 179 ~~~p~~~~---~~~w~v~l~~i~v~~~~~~~----------~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~---~~~ 242 (325)
T 1ibq_A 179 TYTDADSS---QGYWGFSTDGYSIGDGSSSS----------SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQE---SYE 242 (325)
T ss_dssp EEEECBCT---TSSCEEEECEEEETTSCCBS----------CCEEEEECTTCCSEEECHHHHHHHHTTSTTCBC---CSS
T ss_pred EEEEcCCC---CceEEEEECcEEECCeeccC----------CCceEEEeCCCCcEeCCHHHHHHHHHhCCCceE---cCc
Confidence 99999853 35799999999999976531 235799999999999999999999888743211 100
Q ss_pred ccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCCC
Q 011401 368 SQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGGP 446 (486)
Q Consensus 368 ~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~~ 446 (486)
... ....|+ . .+|+|+|+|+| ++++||+++|++...+ .+...|++ |..... ++
T Consensus 243 ---~g~-~~~~C~-----~--~~P~i~f~fgg--~~~~i~~~~~~~~~~~-------~~~~~C~~~i~~~~~------~~ 296 (325)
T 1ibq_A 243 ---AGG-YVFSCS-----T--DLPDFTVVIGD--YKAVVPGKYINYAPVS-------TGSSTCYGGIQSNSG------LG 296 (325)
T ss_dssp ---SSS-CEEETT-----C--CCCCEEEEETT--EEEEECHHHHEEEESS-------TTCSEEEESEEECTT------TC
T ss_pred ---CCe-EEEEcC-----C--CCCcEEEEECC--EEEEECHHHhcccccC-------CCCCeEEEEEEcCCC------CC
Confidence 000 011354 2 38999999965 9999999999986321 13368996 554321 24
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
.||||+.|||++|+|||++++|||||++.
T Consensus 297 ~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 297 LSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 79999999999999999999999999863
No 28
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=3.8e-53 Score=434.39 Aligned_cols=329 Identities=20% Similarity=0.316 Sum_probs=249.3
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcc
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSD 150 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~ 150 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.+ |..| ++.|+|++|+||+...|
T Consensus 19 ~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--c~~~-----~~~y~~~~SsT~~~~~~---------------- 74 (395)
T 2qp8_A 19 SGQGYYVEMTVGSP-PQTLNILVDTGSSNFAVGAAP--HPFL-----HRYYQRQLSSTYRDLRK---------------- 74 (395)
T ss_dssp TTTEEEEEEEETTT-TEEEEEEEETTCCCEEEECSC--CTTC-----SCCCCGGGCTTCEEEEE----------------
T ss_pred CCceEEEEEEecCC-CceEEEEEecCCCceEEECCC--Cccc-----cCCcCcccCCCceeCCc----------------
Confidence 46789999999999 999999999999999999987 7555 35899999999986542
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCC------CCcceee
Q 011401 151 LCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------GEPIGVA 224 (486)
Q Consensus 151 ~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------~~~~GIl 224 (486)
. |.+.|++|++.|.+++|+|+|++.. .+.+ .+.|++..... ...+|||
T Consensus 75 ----------------------~-~~i~Yg~Gs~~G~~~~Dtv~ig~g~--~~~~-~~~~~~~~~~~~~f~~~~~~dGIl 128 (395)
T 2qp8_A 75 ----------------------G-VYVPYTQGKWEGELGTDLVSIPHGP--NVTV-RANIAAITESDKFFINGSNWEGIL 128 (395)
T ss_dssp ----------------------E-EEEECSSCEEEEEEEEEEEECTTSC--SCEE-EEEEEEEEEEESCSCTTCCCCEEE
T ss_pred ----------------------e-EEEEECCcEEEEEEEeEEEEECCCC--CceE-EEEEEEEEccCcccccccCccceE
Confidence 3 9999999999999999999998411 1222 25677765431 2479999
Q ss_pred ecCCCCC--------chHhhhcccCCCCCCceEEeccCCCCCCC----CCCCCcceeecccccccccccCCCCCeeEeec
Q 011401 225 GFGRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFDSN----RTRLPSPLILGRYEDKEKRVNSEEAEFVYTDM 292 (486)
Q Consensus 225 GLg~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~----~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl 292 (486)
|||++.+ +++.+|.+|+.+ .++||+||.+.....+ .....|.|+||++|+.+ +.+++.|+|+
T Consensus 129 GLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~-----~~g~l~~~p~ 202 (395)
T 2qp8_A 129 GLAYAEIARPDDSLEPFFDSLVKQTHV-PNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSL-----YTGSLWYTPI 202 (395)
T ss_dssp ECSCGGGCSSCTTSCCHHHHHHHHSCC-CSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGG-----EEEEEEEEEC
T ss_pred EcCchhhccCCCCCCCHHHHHHHccCC-cceEEEEeccccccccccccccCCCcEEEECCcCccc-----ccCceEEecc
Confidence 9999765 456789887765 4899999975311100 00157999999999875 7899999999
Q ss_pred ccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccccccc
Q 011401 293 LDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIEE 372 (486)
Q Consensus 293 ~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~ 372 (486)
... .+|.|.|++|+||++.+.++...+ ....+||||||++++||+++|++|.++|.+.... .+... ..
T Consensus 203 ~~~----~~~~v~l~~i~v~g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~--~~~~~-~~ 270 (395)
T 2qp8_A 203 RRE----WYYEVIIVRVEINGQDLKMDCKEY-----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPD-GF 270 (395)
T ss_dssp CSB----TTBBCCEEEEEETTEECCCCGGGG-----GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT--SCCCH-HH
T ss_pred CCC----ceEEEEEEEEEECCEEcccCcccc-----CCceEEEEcCCCcEecCHHHHHHHHHHHhhhccc--ccCCc-cc
Confidence 863 589999999999999887654333 1357999999999999999999999999887532 11100 00
Q ss_pred cCC-CCCcccccCccccCCCeEEEEEeCCe----eEEEeCCcceeEEccccCCCcccCCceEEEE--EEeCCCCcccCCC
Q 011401 373 KTG-LSPCYYFDQVVKGNVPTVELHFVGSN----SSVALPRKNYFYDFLDAGDGKAKKRNVGCLM--LMNGGDEEELSGG 445 (486)
Q Consensus 373 ~~~-~~~C~~~~~~~~~~~P~i~~~f~gg~----~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~--i~~~~~~~~~~~~ 445 (486)
..+ ...|+.........+|+|+|+|+|+. ++|+|+|++|+++..+. ......|++ +... .
T Consensus 271 ~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~~-----~~~~~~C~~~~i~~~--------~ 337 (395)
T 2qp8_A 271 WLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV-----ATSQDDCYKFAISQS--------S 337 (395)
T ss_dssp HTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCT-----TCCSCEEEEECEEEE--------S
T ss_pred cccccccccccccchHhhCCcEEEEEccCCCCceEEEEECHHHhEeecccC-----CCCCceEEEEEecCC--------C
Confidence 011 34798765433345999999999851 27999999999874320 012358974 4432 1
Q ss_pred CceeechhheeccEEEEeCCCCEEEEEcCCCchhH
Q 011401 446 PGATLGNYQQQGFEVVYDLEKGKVGFARRQCASLW 480 (486)
Q Consensus 446 ~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~~ 480 (486)
..||||+.|||++|+|||++++|||||+++|+.++
T Consensus 338 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~ 372 (395)
T 2qp8_A 338 TGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHD 372 (395)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEEETTCCCC
T ss_pred CcEEEChHHhCCeeEEEECCCCEEEEEeccCCCCC
Confidence 36999999999999999999999999999998753
No 29
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=6e-53 Score=424.43 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=241.6
Q ss_pred ccCC-CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCC
Q 011401 67 LPLS-PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSS 145 (486)
Q Consensus 67 ~p~~-~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~ 145 (486)
+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ .|+|++|+++.
T Consensus 5 ~~l~n~~~~Y~~~i~iGTP-~q~~~v~~DTGSs~lWv~~~~-------------~y~~s~Ss~~~--------------- 55 (340)
T 1wkr_A 5 VPATNQLVDYVVNVGVGSP-ATTYSLLVDTGSSNTWLGADK-------------SYVKTSTSSAT--------------- 55 (340)
T ss_dssp EEEEECSSCEEEEEEETTT-TEEEEEEEETTCCCCEECSSS-------------CCCCCTTCEEE---------------
T ss_pred EeeeccCcEEEEEEEECCC-CcEEEEEEeCCChhheecCCC-------------ccCCcCCcccc---------------
Confidence 4555 35689999999999 999999999999999998653 78998887543
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC--Cccee
Q 011401 146 LPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG--EPIGV 223 (486)
Q Consensus 146 ~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~--~~~GI 223 (486)
.|. |.+.|++|++.|.+++|+|+|++ ++++++.|||++...+ ..+||
T Consensus 56 -------------------------~~~-~~i~Yg~Gs~~G~~~~Dtv~~g~-----~~v~~~~fg~~~~~~~~~~~~Gi 104 (340)
T 1wkr_A 56 -------------------------SDK-VSVTYGSGSFSGTEYTDTVTLGS-----LTIPKQSIGVASRDSGFDGVDGI 104 (340)
T ss_dssp -------------------------EEE-EEEECSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEESCTTCSEE
T ss_pred -------------------------Cce-EEEEECCcEEEEEEEEEEEEECC-----EEEcceEEEEEEccCCCcCCCcE
Confidence 133 99999999999999999999998 7899999999997643 58999
Q ss_pred eecCCCCCc--------------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeE
Q 011401 224 AGFGRGLLS--------------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVY 289 (486)
Q Consensus 224 lGLg~~~~S--------------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~ 289 (486)
||||++.++ ++.+|.+|+.+.+++||+||.+.... .. ..|.|+||++|+.+ +.+++.|
T Consensus 105 lGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~-~~--~~G~l~fGg~d~~~-----~~g~l~~ 176 (340)
T 1wkr_A 105 LGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSE-SS--TNGELTFGATDSSK-----YTGSITY 176 (340)
T ss_dssp EECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSS-SE--EEEEEEESSCCGGG-----CSSCCEE
T ss_pred EECCccccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCC-CC--CCcEEEEcccChhh-----cccceEE
Confidence 999987654 56788888888889999999864211 11 47999999999875 8899999
Q ss_pred eecccCCCCCceeEEeeeceEEee-eeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccc
Q 011401 290 TDMLDNPKHPYFYSVGLEGISVGK-RNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERAS 368 (486)
Q Consensus 290 tpl~~~~~~~~~y~v~l~~I~vgg-~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~ 368 (486)
+|++..+....+|.|. ++|+|++ +.+.. ...+||||||++++||+++|++|.+++.+....
T Consensus 177 ~p~~~~~~~~~~w~v~-~~i~v~~~~~l~~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~------ 238 (340)
T 1wkr_A 177 TPITSTSPASAYWGIN-QSIRYGSSTSILS-----------STAGIVDTGTTLTLIASDAFAKYKKATGAVADN------ 238 (340)
T ss_dssp EECCSSTTGGGSSEEE-EEEEETTTEEEEE-----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECT------
T ss_pred EECccCCCCcceEEEE-eeEEECCCeEccC-----------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEcC------
Confidence 9999764334689999 9999998 76641 237999999999999999999998877543211
Q ss_pred cccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCc
Q 011401 369 QIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPG 447 (486)
Q Consensus 369 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~ 447 (486)
...+|..+|.....+|+|+|+|+| .+|+|+|++|+++...... .......|+ ++....... ..+..
T Consensus 239 -------~~g~~~~~C~~~~~~p~i~f~f~g--~~~~i~~~~yi~~~~~~~~--~g~~~~~c~~~~~~~~~~~--~~~~~ 305 (340)
T 1wkr_A 239 -------NTGLLRLTTAQYANLQSLFFTIGG--QTFELTANAQIWPRNLNTA--IGGSASSVYLIVGDLGSDS--GEGLD 305 (340)
T ss_dssp -------TTSSEEECHHHHHTCCCEEEEETT--EEEEECTGGGBCCGGGGGG--GTCCSSCEEBCEEECSSCT--TSSCC
T ss_pred -------CCCeEEeeccccccCCcEEEEECC--EEEEEcHHHhccccccccc--cCCCCceEEEEEecCCCCC--CCCcc
Confidence 012344444333348999999987 8999999999976421000 001123565 665422111 01346
Q ss_pred eeechhheeccEEEEeCCCCEEEEEcCCCch
Q 011401 448 ATLGNYQQQGFEVVYDLEKGKVGFARRQCAS 478 (486)
Q Consensus 448 ~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~ 478 (486)
||||+.|||++|+|||++++|||||+++|++
T Consensus 306 ~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 336 (340)
T 1wkr_A 306 FINGLTFLERFYSVYDTTNKRLGLATTSFTT 336 (340)
T ss_dssp EEECHHHHTSEEEEEETTTTEEEEEECTTTT
T ss_pred eEeChHhhhheEEEEeCCCCeEEEEecCCCC
Confidence 9999999999999999999999999999985
No 30
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=3.4e-53 Score=438.75 Aligned_cols=305 Identities=19% Similarity=0.260 Sum_probs=249.6
Q ss_pred cccccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCc--ccccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 64 QVSLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFEC--ILCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 64 ~~~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C--~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
...+|+. .+.+|+++|.|||| ||++.|++||||+++||+|.+ | ..|..+ +.|+|++|+|++...
T Consensus 126 ~~~~pL~n~~d~~Y~~~I~IGTP-pQ~~~vi~DTGSs~lWV~s~~--C~s~~C~~~---~~ydps~SsT~~~~~------ 193 (451)
T 3qvc_A 126 FDNVELKDLANVLSFGEAKLGDN-GQKFNFLFHTASSNVWVPSIK--CTSESCESK---NHYDSSKSKTYEKDD------ 193 (451)
T ss_dssp -CCCCGGGGBCEEEEEEEEETTT-TEEEEEEEESSBCSEEEEBTT--CCSGGGTTS---CCBCGGGCTTCEEEE------
T ss_pred CCccceeecCCCEEEEEEEECCC-CcEEEEEEcCCCccEEEecCC--CCccccCCC---CCCCCCCCcccccCC------
Confidence 4566776 46789999999999 999999999999999999998 7 578654 589999999998533
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceec----
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHT---- 215 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~---- 215 (486)
|. |.+.||+|++.|.+++|+|+|++ ..++ +.|||++.
T Consensus 194 --------------------------------~~-f~i~YgdGs~~G~~~~Dtv~igg-----~~v~-~~Fg~a~~t~~~ 234 (451)
T 3qvc_A 194 --------------------------------TP-VKLTSKAGTISGIFSKDLVTIGK-----LSVP-YKFIEMTEIVGF 234 (451)
T ss_dssp --------------------------------EE-EEEECSSEEEEEEEEEEEEEETT-----EEEE-EEEEEEEEEEEC
T ss_pred --------------------------------CE-EEEEECCCEEEEEEEEEEEEECC-----EEEE-EEEEEEEecccc
Confidence 23 99999999999999999999998 7888 99999987
Q ss_pred CC----CCcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCC
Q 011401 216 TL----GEPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEA 285 (486)
Q Consensus 216 ~~----~~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~ 285 (486)
.. ...+||||||++.+ +++.+|.+|+.+.+++||+||.+.. . .+|.|+|||+|+.+ +.+
T Consensus 235 ~~~f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~----~--~~G~l~fGgiD~s~-----y~G 303 (451)
T 3qvc_A 235 EPFYSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPEN----K--NKGYLTIGGIEERF-----FDG 303 (451)
T ss_dssp TTHHHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTC----T--TEEEEEESSCCGGG-----EEE
T ss_pred CCCccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCC----C--CCCEEEECCcchhh-----cCC
Confidence 42 25799999998764 5788999988888999999998752 1 47999999999885 889
Q ss_pred CeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccc
Q 011401 286 EFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHE 365 (486)
Q Consensus 286 ~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~ 365 (486)
++.|+|+... .+|.|.++ |+||++ .. ....+||||||++++||++++++|.+++.+....
T Consensus 304 ~l~~~pv~~~----~~w~v~l~-I~Vgg~-~~-----------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~--- 363 (451)
T 3qvc_A 304 PLNYEKLNHD----LMWQVDLD-VHFGNV-SS-----------KKANVILDSATSVITVPTEFFNQFVESASVFKVP--- 363 (451)
T ss_dssp EEEEEECSST----TSSEEEEE-EEETTE-EE-----------EEEEEEECTTBSSEEECHHHHHHHHTTTTCEECT---
T ss_pred ceEEEEcccC----CeeEEEEE-EEECCc-cC-----------CCceEEEeCCCccccCCHHHHHHHHHHcCCeecC---
Confidence 9999999853 58999999 999987 11 1357999999999999999999998887433210
Q ss_pred ccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCC
Q 011401 366 RASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSG 444 (486)
Q Consensus 366 ~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~ 444 (486)
...+|..+|. ...+|+|+|+|+| .+++||+++|+++..+ .++..|+ ++......
T Consensus 364 ----------~~g~y~v~C~-~~~~P~itf~fgg--~~i~lp~~~yi~~~~~-------~~~~~C~~~i~~~~~~----- 418 (451)
T 3qvc_A 364 ----------FLSLYVTTCG-NTKLPTLEYRSPN--KVYTLEPKQYLEPLEN-------IFSALCMLNIVPIDLE----- 418 (451)
T ss_dssp ----------TSSCEEEETT-CTTCCCEEEEETT--EEEEECHHHHEEECTT-------TSTTEEEECEEECCCS-----
T ss_pred ----------CCCeEEeeCC-cCcCCcEEEEECC--EEEEEcHHHheeeccc-------CCCCeEEEEEEeCCCC-----
Confidence 1124555555 3458999999987 9999999999997532 2345788 56643310
Q ss_pred CCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 445 GPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 445 ~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
+..||||+.|||++|+|||++++|||||+++
T Consensus 419 ~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 419 KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 2479999999999999999999999999875
No 31
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.1e-52 Score=431.96 Aligned_cols=332 Identities=20% Similarity=0.285 Sum_probs=249.0
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCcc
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHSSLPTSD 150 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~~~~~~~ 150 (486)
.+..|+++|.|||| +|++.|+|||||+++||+|.+ | |.. .+.|+|++|+||+...|
T Consensus 26 ~~~~Y~~~i~iGTP-~q~~~v~~DTGSs~lWv~~~~--c--~~~---~~~y~~~~SsT~~~~~~---------------- 81 (402)
T 3vf3_A 26 SGQGYYVEMTVGSP-PQTLNILVDTGSSNFAVGAAP--H--PFL---HRYYQRQLSSTYRDLRK---------------- 81 (402)
T ss_dssp TTTEEEEEEEETTT-TEEEEEEEETTCCCEEEECSC--C--TTC---SCCCCGGGCTTCEEEEE----------------
T ss_pred CCCEEEEEEEECCC-CeEEEEEEeCCCCceEEccCC--C--Ccc---cCCcCcccCcccccCCC----------------
Confidence 46689999999999 999999999999999999987 6 432 35899999999986532
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeec-ceEEeceecCC------CCccee
Q 011401 151 LCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLH-NFTFGCAHTTL------GEPIGV 223 (486)
Q Consensus 151 ~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~-~~~FG~~~~~~------~~~~GI 223 (486)
. |.+.|++|++.|.+++|+|+|++. ..+. .+.|+|..... ...+||
T Consensus 82 ----------------------~-~~i~Yg~Gs~~G~~~~D~v~ig~~----~~~~~~~~~~~~~~~~~~~~~~~~~dGI 134 (402)
T 3vf3_A 82 ----------------------G-VYVPYTQGKWEGELGTDLVSIPHG----PNVTVRANIAAITESDKFFINGSNWEGI 134 (402)
T ss_dssp ----------------------E-EEEECSSCEEEEEEEEEEEECTTS----CSCEEEEEEEEEEEEESCSCTTCCCCEE
T ss_pred ----------------------E-EEEEECcEEEEEEEEEEEEEECCc----cccceeeeEEEEEccccccccCCCccce
Confidence 3 999999999999999999999852 1222 24578766532 247999
Q ss_pred eecCCCCC--------chHhhhcccCCCCCCceEEeccCCCCCCC----CCCCCcceeecccccccccccCCCCCeeEee
Q 011401 224 AGFGRGLL--------SFPAQLASLSPHLGNRFSYCLVSHSFDSN----RTRLPSPLILGRYEDKEKRVNSEEAEFVYTD 291 (486)
Q Consensus 224 lGLg~~~~--------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~----~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tp 291 (486)
||||++.+ +++.+|.+|+.+. ++||+||.+.....+ .....|.|+||++|+.+ +.+++.|+|
T Consensus 135 lGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~-----~~g~l~~~p 208 (402)
T 3vf3_A 135 LGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSL-----YTGSLWYTP 208 (402)
T ss_dssp EECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCC-------------EEEEESSCCGGG-----EEEEEEEEE
T ss_pred EEcCchhhcccCCcCCcHHHHHHHccCCc-cceEEEeecccccccccccccCCCCEEEeCCcCccc-----ccCceEEEe
Confidence 99998754 5677899887765 899999975321100 01157999999999875 889999999
Q ss_pred cccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccccccc
Q 011401 292 MLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERASQIE 371 (486)
Q Consensus 292 l~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~~~~ 371 (486)
+... .+|.|.+++|+|+++.+.++...+ +...+||||||++++||+++|++|.++|.+.... .+.....
T Consensus 209 ~~~~----~~w~v~l~~i~v~g~~~~~~~~~~-----~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~--~~~~~~~ 277 (402)
T 3vf3_A 209 IRRE----WYYEVIIVRVEINGQDLKMDCKEY-----NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASST--EKFPDGF 277 (402)
T ss_dssp CSSB----TTBEECEEEEEETTEECCCCGGGG-----GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTT--SCCCTTG
T ss_pred CCcC----cEEEEEEeEEEECCEEeccccccc-----CCCeEEEECCCCcccCCHHHHHHHHHHHhhhccc--cccCccc
Confidence 9863 589999999999999887654322 2457999999999999999999999999887531 1110000
Q ss_pred ccCCCCCcccccCccccCCCeEEEEEeCC----eeEEEeCCcceeEEccccCCCcccCCceEEEEEEeCCCCcccCCCCc
Q 011401 372 EKTGLSPCYYFDQVVKGNVPTVELHFVGS----NSSVALPRKNYFYDFLDAGDGKAKKRNVGCLMLMNGGDEEELSGGPG 447 (486)
Q Consensus 372 ~~~~~~~C~~~~~~~~~~~P~i~~~f~gg----~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~i~~~~~~~~~~~~~~ 447 (486)
.......|+.........+|+|+|+|+|+ .++|+|+|++|+++..+. ......|+++..... ...
T Consensus 278 ~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~-----~~~~~~C~~~~~~~~------~~~ 346 (402)
T 3vf3_A 278 WLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDV-----ATSQDDCYKFAISQS------STG 346 (402)
T ss_dssp GGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEEEEECHHHHEEECCCG-----GGTTEEEEEECEEEE------SSC
T ss_pred cccccccccccccchHhhCCceEEEEecCCCCceEEEEECHHHheehhccC-----CCCCceEEEEeccCC------CCc
Confidence 00113578876543333599999999984 126999999999875320 011258996431111 246
Q ss_pred eeechhheeccEEEEeCCCCEEEEEcCCCchhHh
Q 011401 448 ATLGNYQQQGFEVVYDLEKGKVGFARRQCASLWE 481 (486)
Q Consensus 448 ~ILG~~fl~~~~vvfD~~~~rIGfa~~~C~~~~~ 481 (486)
||||+.|||++|+|||++++|||||+++|+..++
T Consensus 347 ~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~~~~ 380 (402)
T 3vf3_A 347 TVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDE 380 (402)
T ss_dssp EEECHHHHTTEEEEEEGGGTEEEEEEETTCCBCS
T ss_pred EEEChHHhCCeEEEEECCCCEEEEEecccCcccC
Confidence 9999999999999999999999999999997643
No 32
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=1.2e-52 Score=418.93 Aligned_cols=300 Identities=18% Similarity=0.267 Sum_probs=238.0
Q ss_pred ccccCCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCcccccccC
Q 011401 65 VSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAHS 144 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~ 144 (486)
...|+..+.+|+++|.|| | |++.|+|||||+++||+|.+ |..|..+ ..+.|+|++|+ ++..
T Consensus 7 ~~~~~~~~~~Y~~~i~iG-~--q~~~v~~DTGSs~lWv~~~~--C~~~~c~-~~~~y~~~~Ss-~~~~------------ 67 (323)
T 1izd_A 7 TTNPTSNDEEYITQVTVG-D--DTLGLDFDTGSADLWVFSSQ--TPSSERS-GHDYYTPGSSA-QKID------------ 67 (323)
T ss_dssp EEEECGGGCCEEEEEEET-T--EEEEEEEETTCCCEEECBTT--SCHHHHT-TCCCBCCCTTC-EEEE------------
T ss_pred eeeEcCCCCEEEEEEEEC-C--EEEEEEEcCCCcceEEecCC--CCccccc-CCCCCCccccC-CccC------------
Confidence 334666788999999999 8 99999999999999999998 8776432 34689999998 5421
Q ss_pred CCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCC------
Q 011401 145 SLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL------ 217 (486)
Q Consensus 145 ~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~------ 217 (486)
.|. |.+.|++|+ +.|.+++|+|+|++ ++++++.|||++...
T Consensus 68 --------------------------~~~-~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~~ 115 (323)
T 1izd_A 68 --------------------------GAT-WSISYGDGSSASGDVYKDKVTVGG-----VSYDSQAVESAEKVSSEFTQD 115 (323)
T ss_dssp --------------------------EEE-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHHC
T ss_pred --------------------------CCe-EEEEcCCCCeEEEEEEEEEEEECC-----EEECceEEEEEEecccccccc
Confidence 234 999999999 59999999999998 789999999999764
Q ss_pred CCcceeeecCCCCCc---------hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCee
Q 011401 218 GEPIGVAGFGRGLLS---------FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFV 288 (486)
Q Consensus 218 ~~~~GIlGLg~~~~S---------l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~ 288 (486)
...+||||||++.++ ++.+|.+| +.+++||+||.+. ..|.|+||++|+.+ +.+++.
T Consensus 116 ~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~L~~~--------~~G~l~fGg~d~~~-----~~g~l~ 180 (323)
T 1izd_A 116 TANDGLLGLAFSSINTVQPTPQKTFFDNVKSS--LSEPIFAVALKHN--------APGVYDFGYTDSSK-----YTGSIT 180 (323)
T ss_dssp TTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEECCTT--------SCEEEEESSCCTTS-----EEEEEE
T ss_pred CCCceEEecCcccccccCCCCCCCHHHHHHHh--ccCcEEEEEccCC--------CCCEEEECCcCccc-----cccceE
Confidence 257999999997654 56788764 6779999999763 47999999999874 789999
Q ss_pred EeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhccccccc
Q 011401 289 YTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERAS 368 (486)
Q Consensus 289 ~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~~ 368 (486)
|+|+... ..+|.|.+++|+||+ .+. . ....+||||||++++||+++|++|.++|.+.. +...
T Consensus 181 ~~p~~~~---~~~w~v~l~~i~v~~-~~~--~--------~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~---~~~~- 242 (323)
T 1izd_A 181 YTDVDNS---QGFWGFTADGYSIGS-DSS--S--------DSITGIADTGTTLLLLDDSIVDAYYEQVNGAS---YDSS- 242 (323)
T ss_dssp EEECBCT---TSSCEEEESEEEETT-EEE--C--------CCEEEEECTTCCSEEECHHHHHHHHTTSTTCE---EETT-
T ss_pred EEECCCC---CceEEEEECeEEECC-ccc--C--------CCceEEEeCCCcceeCCHHHHHHHHHhCCCcE---EcCc-
Confidence 9999853 358999999999999 543 1 13579999999999999999999988874221 1100
Q ss_pred cccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCCCc
Q 011401 369 QIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGGPG 447 (486)
Q Consensus 369 ~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~~~ 447 (486)
.+ -|..+|.. .+|+|+|+|+| ++|+||+++|++.. .++..|++ |..... ++.
T Consensus 243 -----~g---~~~~~C~~--~~P~i~f~fgg--~~~~i~~~~~~~~~---------~~~~~C~~~i~~~~~------~~~ 295 (323)
T 1izd_A 243 -----QG---GYVFPSSA--SLPDFSVTIGD--YTATVPGEYISFAD---------VGNGQTFGGIQSNSG------IGF 295 (323)
T ss_dssp -----TT---EEEEETTC--CCCCEEEEETT--EEEEECHHHHEEEE---------CSTTEEEESEEECTT------TSS
T ss_pred -----CC---EEEEECCC--CCceEEEEECC--EEEecCHHHeEEec---------CCCCeEEEEEEcCCC------CCc
Confidence 01 12223332 38999999965 99999999999863 13468996 664321 247
Q ss_pred eeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 448 ATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 448 ~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
||||+.|||++|+|||++++|||||++.
T Consensus 296 ~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 296 SIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 9999999999999999999999999863
No 33
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=1.7e-52 Score=418.06 Aligned_cols=301 Identities=17% Similarity=0.271 Sum_probs=237.7
Q ss_pred cccccCCCCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcccccCCCCCCCCCCCCCCCcccccCCCccccccc
Q 011401 64 QVSLPLSPGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECILCENKQEKPAPPLNISSTATKVSCKSPACSAAH 143 (486)
Q Consensus 64 ~~~~p~~~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~ 143 (486)
+...|+..+.+|+++|.|| | |++.|+|||||+++||+|.+ |..|..+ ..+.|+|++|+ ++..
T Consensus 6 v~~~~~~~~~~Y~~~i~iG-~--Q~~~v~~DTGSs~lWv~~~~--C~~~~c~-~~~~y~~~~Ss-~~~~----------- 67 (323)
T 1bxo_A 6 ATNTPTANDEEYITPVTIG-G--TTLNLNFDTGSADLWVFSTE--LPASQQS-GHSVYNPSATG-KELS----------- 67 (323)
T ss_dssp EEEEECGGGSCEEEEEEET-T--EEEEEEEETTCCCEEECBTT--SCHHHHT-TSCCBCHHHHC-EEEE-----------
T ss_pred eeeeecCCCCEEEEEEEEC-C--EEEEEEEeCCCcceEEecCC--CCchhcc-CCCCCCcccCC-cccC-----------
Confidence 3445666788999999999 8 99999999999999999998 8776432 35689999988 5421
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCce-eEeEEEEEEEEeccCCCCceeecceEEeceecCC-----
Q 011401 144 SSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGS-LVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTL----- 217 (486)
Q Consensus 144 ~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs-~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~----- 217 (486)
.|. |.+.|++|+ +.|.+++|+|+|++ ++++++.|||++...
T Consensus 68 ---------------------------~~~-~~i~Yg~Gs~~~G~~~~D~v~ig~-----~~v~~~~fg~~~~~~~~~~~ 114 (323)
T 1bxo_A 68 ---------------------------GYT-WSISYGDGSSASGNVFTDSVTVGG-----VTAHGQAVQAAQQISAQFQQ 114 (323)
T ss_dssp ---------------------------EEE-EEEECTTSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHHT
T ss_pred ---------------------------CCe-EEEEeCCCCeEEEEEEEEEEEECC-----EEECcEEEEEEEecCccccc
Confidence 234 999999999 59999999999998 789999999999754
Q ss_pred -CCcceeeecCCCCC---------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCe
Q 011401 218 -GEPIGVAGFGRGLL---------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEF 287 (486)
Q Consensus 218 -~~~~GIlGLg~~~~---------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l 287 (486)
...+||||||++.+ +++.+|.++ +.+++||+||.+. ..|.|+||++|+.+ +.+++
T Consensus 115 ~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~--------~~G~l~fGg~d~~~-----~~g~l 179 (323)
T 1bxo_A 115 DTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS--LAQPLFAVALKHQ--------QPGVYDFGFIDSSK-----YTGSL 179 (323)
T ss_dssp CTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG--BSSSEEEEECCSS--------SCEEEEESSCCGGG-----BSSCC
T ss_pred CCCCceEEEeCcccccccccCCCCCHHHHHHHh--cCCcEEEEEEeCC--------CCceEEEeCcChhh-----ccCce
Confidence 25799999999754 356788863 6679999999763 57999999999875 88999
Q ss_pred eEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHHHHhhcccccc
Q 011401 288 VYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFDRRLGRVHERA 367 (486)
Q Consensus 288 ~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~~~~~~~~~~~ 367 (486)
.|+|+... ..+|.|.+++|+||+ ... ....+||||||++++||+++|++|.++|..... ...
T Consensus 180 ~~~p~~~~---~~~w~v~l~~i~v~~-~~~-----------~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~---~~~ 241 (323)
T 1bxo_A 180 TYTGVDNS---QGFWSFNVDSYTAGS-QSG-----------DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQ---DSN 241 (323)
T ss_dssp EEEECBCT---TSSCEEEEEEEEETT-EEE-----------EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEE---ETT
T ss_pred EEEECCCC---CCeEEEEEeeEEECC-ccC-----------CCceEEEeCCCCceeCCHHHHHHHHHhCCCceE---cCc
Confidence 99999853 357999999999998 211 134799999999999999999999888743211 100
Q ss_pred ccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEEE-EEeCCCCcccCCCC
Q 011401 368 SQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCLM-LMNGGDEEELSGGP 446 (486)
Q Consensus 368 ~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl~-i~~~~~~~~~~~~~ 446 (486)
. .. ....|+ . .+|+|+|+|+| ++++||+++|+++.. .+...|++ |..... ++
T Consensus 242 ~---g~-~~~~C~-----~--~~P~i~f~fgg--~~~~l~~~~~~~~~~--------~~~~~C~~~i~~~~~------~~ 294 (323)
T 1bxo_A 242 A---GG-YVFDCS-----T--NLPDFSVSISG--YTATVPGSLINYGPS--------GDGSTCLGGIQSNSG------IG 294 (323)
T ss_dssp T---TE-EEECTT-----C--CCCCEEEEETT--EEEEECHHHHEEEEC--------SSSSCEEESEEECTT------CS
T ss_pred C---CE-EEEECC-----C--CCceEEEEECC--EEEEECHHHeEEecc--------CCCCeEEEEEECCCC------CC
Confidence 0 00 011355 2 38999999965 999999999998632 13367996 654321 24
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
.||||+.|||++|+|||++|+|||||++.
T Consensus 295 ~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 295 FSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred cEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 79999999999999999999999999863
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=2.6e-42 Score=329.49 Aligned_cols=220 Identities=20% Similarity=0.302 Sum_probs=185.8
Q ss_pred ccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc---cccCCCCCCCCCCCCCCCcccccCCCccccc
Q 011401 67 LPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI---LCENKQEKPAPPLNISSTATKVSCKSPACSA 141 (486)
Q Consensus 67 ~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~---~C~~~~~~~~f~~~~SsT~~~~~c~~~~C~~ 141 (486)
+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 5 ~~l~n~~~~~Y~~~i~iGtP-~q~~~v~~DTGSs~lWv~~~~--C~~~~~C~~~---~~y~~~~SsT~~~~~-------- 70 (239)
T 1b5f_A 5 VALTNDRDTSYFGEIGIGTP-PQKFTVIFDTGSSVLWVPSSK--CINSKACRAH---SMYESSDSSTYKENG-------- 70 (239)
T ss_dssp EEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCSCHHHHTS---CCBCGGGCTTCEEEE--------
T ss_pred eeeeecCCCEEEEEEEECCC-CeEEEEEEeCCCcceEEEcCC--CCCCcccCCC---CCCCCccCCCeeeCC--------
Confidence 4444 57789999999999 999999999999999999998 75 68754 589999999998643
Q ss_pred ccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEeccCCCCceeecceEEeceecCCC---
Q 011401 142 AHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPVSSQKSLVLHNFTFGCAHTTLG--- 218 (486)
Q Consensus 142 ~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~~~~~~~~~~~~~FG~~~~~~~--- 218 (486)
|. |.+.|++|++.|.+++|+|+|++ ..++++.|||+....+
T Consensus 71 ------------------------------~~-~~i~Yg~Gs~~G~~~~D~v~~g~-----~~v~~~~fg~~~~~~~~~f 114 (239)
T 1b5f_A 71 ------------------------------TF-GAIIYGTGSITGFFSQDSVTIGD-----LVVKEQDFIEATDEADNVF 114 (239)
T ss_dssp ------------------------------EE-EEEECSSCEEEEEEEEEEEEETT-----EEEEEEEEEEEEEECHHHH
T ss_pred ------------------------------cE-EEEEECCCcEEEEEEEEEEEECC-----cEEccEEEEEEEeccCccc
Confidence 23 99999999999999999999998 7899999999986532
Q ss_pred ---CcceeeecCCCCCc--hHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceeecccccccccccCCCCCeeEeecc
Q 011401 219 ---EPIGVAGFGRGLLS--FPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLILGRYEDKEKRVNSEEAEFVYTDML 293 (486)
Q Consensus 219 ---~~~GIlGLg~~~~S--l~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~fG~~d~~~~~~~~~~~~l~~tpl~ 293 (486)
.++||||||++.++ +..+|.+|+.+.+++||+||.+... .. ..|.|+||++|+.+ +.+++.|+|+.
T Consensus 115 ~~~~~~GilGLg~~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~--~~--~~G~l~fGg~d~~~-----~~g~l~~~p~~ 185 (239)
T 1b5f_A 115 LHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVD--EE--EGGELVFGGLDPNH-----FRGDHTYVPVT 185 (239)
T ss_dssp TTCSCCEEEECSCCSSSCCHHHHHHHTTCCSSSEEEEEECCSCS--SS--CCEEEEETSCCGGG-----EEEEEEEEEEE
T ss_pred cccCcceEEecCccccccHHHHHHHHCCCCCCCEEEEEEeCCCC--CC--CCeEEEECCcChhh-----ccCceEEEEcc
Confidence 47999999999876 4567888777778999999987421 11 57999999999874 78999999998
Q ss_pred cCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHHHHHHHHH
Q 011401 294 DNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYEKVVAEFD 357 (486)
Q Consensus 294 ~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~~l~~~i~ 357 (486)
.. .+|.|.|++|+|+++.+.+.. ....+||||||++++||+++|++|.++|.
T Consensus 186 ~~----~~~~v~l~~i~v~~~~~~~~~--------~~~~aiiDTGTt~~~lP~~~~~~i~~~ig 237 (239)
T 1b5f_A 186 YQ----YYWQFGIGDVLIGDKSTGFCA--------PGCQAFADSGTSLLSGPTAIVTQINHAIG 237 (239)
T ss_dssp EE----TTEEEEECCEEETTEECCTTT--------TCEEEEECTTCSSEEECHHHHHHHHHHTT
T ss_pred cC----CeEEEEeeEEEECCEEecccC--------CCCEEEEecCcchhhCCHHHHHHHHHHhC
Confidence 53 489999999999998876532 23579999999999999999999998874
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=9.7e-37 Score=291.49 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=174.6
Q ss_pred eeecceEEeceecCCC------CcceeeecCCCCC------chHhhhcccCCCCCCceEEeccCCCCCCCCCCCCcceee
Q 011401 203 LVLHNFTFGCAHTTLG------EPIGVAGFGRGLL------SFPAQLASLSPHLGNRFSYCLVSHSFDSNRTRLPSPLIL 270 (486)
Q Consensus 203 ~~~~~~~FG~~~~~~~------~~~GIlGLg~~~~------Sl~~ql~~~~~~~~~~FS~cL~~~~~~~~~~~~~g~l~f 270 (486)
++++++.|||++...+ ..+||||||++.+ +++.+|.+|+.+.+++||+||.+.... . ..|.|+|
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~--~--~~G~l~f 78 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDA--Q--PGGELML 78 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTC--S--SCEEEEE
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCC--C--CCcEEEE
Confidence 6889999999997654 4799999999865 466789988888899999999875211 1 3799999
Q ss_pred cccccccccccCCCCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHHHH
Q 011401 271 GRYEDKEKRVNSEEAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASLYE 350 (486)
Q Consensus 271 G~~d~~~~~~~~~~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~y~ 350 (486)
|++|+.+ +.+++.|+|+... .+|.|.+++|+|+++.+... ....+||||||++++||+++|+
T Consensus 79 Gg~d~~~-----~~g~l~~~p~~~~----~~~~v~l~~i~v~~~~~~~~---------~~~~aiiDSGTt~~~lP~~~~~ 140 (241)
T 1lya_B 79 GGTDSKY-----YKGSLSYLNVTRK----AYWQVHLDQVEVASGLTLCK---------EGCEAIVDTGTSLMVGPVDEVR 140 (241)
T ss_dssp TSCCGGG-----EEEEEEEEECSSB----TTBEEEEEEEEETTSCEEST---------TCEEEEECTTCSSEEECHHHHH
T ss_pred CCcCHHH-----cCCceEEEECccc----cEEEEEEeEEEECCeeEecc---------CCCEEEEECCCccccCCHHHHH
Confidence 9999875 7899999999853 58999999999999765321 2357999999999999999999
Q ss_pred HHHHHHHHHhhccccccccccccCCCCCcccccCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEE
Q 011401 351 KVVAEFDRRLGRVHERASQIEEKTGLSPCYYFDQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGC 430 (486)
Q Consensus 351 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~C 430 (486)
+|.+++.+.... . + .|..+|.....+|+|+|+|+| ++++|++++|+++..+ .++..|
T Consensus 141 ~l~~~~~~~~~~--------~---g---~~~~~C~~~~~~p~i~f~f~g--~~~~l~~~~y~~~~~~-------~~~~~C 197 (241)
T 1lya_B 141 ELQKAIGAVPLI--------Q---G---EYMIPCEKVSTLPAITLKLGG--KGYKLSPEDYTLKVSQ-------AGKTLC 197 (241)
T ss_dssp HHHHHHTCEEEE--------T---T---EEEEEGGGGGGSCCEEEEETT--EEEEECTTTSEEEETT-------TTSSEE
T ss_pred HHHHHhCCeecc--------C---C---cEEEECCCCccCCeEEEEECC--EEEEECHHHhEEEccC-------CCCCee
Confidence 999988543210 0 0 122333322348999999976 9999999999987531 234689
Q ss_pred E-EEEeCCCCcccCCCCceeechhheeccEEEEeCCCCEEEEEcCC
Q 011401 431 L-MLMNGGDEEELSGGPGATLGNYQQQGFEVVYDLEKGKVGFARRQ 475 (486)
Q Consensus 431 l-~i~~~~~~~~~~~~~~~ILG~~fl~~~~vvfD~~~~rIGfa~~~ 475 (486)
+ +|....... ..+..||||+.|||++|+|||++++|||||+++
T Consensus 198 ~~~~~~~~~~~--~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 198 LSGFMGMDIPP--PSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp EESEEECCCCT--TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEecccCC--CCCCeEEechHHhcceEEEEECCCCEEEEEEcC
Confidence 9 577542210 013579999999999999999999999999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.85 E-value=7e-22 Score=160.16 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=76.5
Q ss_pred cccCC--CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecCCCCcc----cccCCCCCCCCCCCCCCCcccccCCCccc
Q 011401 66 SLPLS--PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCHPFECI----LCENKQEKPAPPLNISSTATKVSCKSPAC 139 (486)
Q Consensus 66 ~~p~~--~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~~~C~----~C~~~~~~~~f~~~~SsT~~~~~c~~~~C 139 (486)
.+|+. .+.+|+++|.|||| +|++.|+|||||+++||+|.+ |. .|..+ +.|+|++|+|++...
T Consensus 4 ~~~l~n~~~~~Y~~~i~iGTP-~Q~~~v~~DTGSs~lWv~~~~--C~~~~~~C~~~---~~y~p~~SsT~~~~~------ 71 (97)
T 1lya_A 4 PEVLKNYMDAQYYGEIGIGTP-PQCFTVVFDTGSSNLWVPSIH--CKLLDIACWIH---HKYNSDKSSTYVKNG------ 71 (97)
T ss_dssp EEEEEEETTTEEEEEEEETTT-TEEEEEEEETTCCCEEEEBTT--CCTTCHHHHTS---CCBCGGGCTTCEEEE------
T ss_pred eEeeEECCCCeEEEEEEECCC-CeEEEEEEeCCCCceEEeEcC--ccCcccccCCC---CCCCchhCCCceeCC------
Confidence 35664 57899999999999 999999999999999999998 86 68754 589999999998653
Q ss_pred ccccCCCCCcccccccCCCCCCCCCCCCCCCCCCCceeeeCCceeEeEEEEEEEEecc
Q 011401 140 SAAHSSLPTSDLCAIAKCPLDSIETSDCKSFSCPPFYYAYGDGSLVARLYKDSLSMPV 197 (486)
Q Consensus 140 ~~~~~~~~~~~~c~~~~c~~~~~~~~~C~~~~c~~~~~~YgdGs~~G~l~~D~v~~~~ 197 (486)
|. |.+.||+|++.|.+++|+|+|++
T Consensus 72 --------------------------------~~-~~i~Yg~Gs~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 --------------------------------TS-FDIHYGSGSLSGYLSQDTVSVPC 96 (97)
T ss_dssp --------------------------------EE-EEEECSSCEEEEEEEEEEEEESC
T ss_pred --------------------------------Cc-EEEEECCcEEEEEEEEEEEEECC
Confidence 23 99999999999999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.63 E-value=3.7e-16 Score=124.12 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=62.0
Q ss_pred cCccccCCCeEEEEEeCCeeEEEeCCcceeEEccccCCCcccCCceEEE-EEEeCCCCcccCCCCceeechhheeccEEE
Q 011401 383 DQVVKGNVPTVELHFVGSNSSVALPRKNYFYDFLDAGDGKAKKRNVGCL-MLMNGGDEEELSGGPGATLGNYQQQGFEVV 461 (486)
Q Consensus 383 ~~~~~~~~P~i~~~f~gg~~~~~l~~~~y~~~~~~~~~~~~~~~~~~Cl-~i~~~~~~~~~~~~~~~ILG~~fl~~~~vv 461 (486)
+|+....+|+|+|+|+| ++++|+|++|+++... .+...|+ +|+..+.. ..++.||||++|||++|+|
T Consensus 6 ~C~~~~~~P~i~f~~gg--~~~~l~~~~yi~~~~~-------~~~~~C~~~~~~~~~~---~~~~~~ILGd~Fl~~~y~v 73 (87)
T 1b5f_B 6 DCNTLSSMPNVSFTIGG--KKFGLTPEQYILKVGK-------GEATQCISGFTAMDAT---LLGPLWILGDVFMRPYHTV 73 (87)
T ss_dssp CGGGGGGCCCEEEEETT--EEEEECHHHHEEEESC-------TTTCEEEESEEECCCB---SSSBEEEECHHHHTTEEEE
T ss_pred ECCCCCcCCcEEEEECC--EEEEECHHHhEEEccC-------CCCCEEEEEEEECCCC---CCCCeEEechHHhccEEEE
Confidence 33333358999999976 9999999999987421 2346899 57653211 1235899999999999999
Q ss_pred EeCCCCEEEEEcCC
Q 011401 462 YDLEKGKVGFARRQ 475 (486)
Q Consensus 462 fD~~~~rIGfa~~~ 475 (486)
||++++|||||+++
T Consensus 74 fD~~~~riGfA~~~ 87 (87)
T 1b5f_B 74 FDYGNLLVGFAEAA 87 (87)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EECCCCEEEEEEcC
Confidence 99999999999864
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.24 Score=42.06 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+.+++++.|+. +++.+++|||++.+-+.-.
T Consensus 23 ~~~~~~v~v~InG---~~~~~LvDTGAs~s~is~~ 54 (148)
T 2i1a_A 23 QVPMLYINIEINN---YPVKAFVDTGAQTTIMSTR 54 (148)
T ss_dssp CCCCCEEEEEETT---EEEEEEECTTCSSCEEEHH
T ss_pred ccceEEEEEEECC---EEEEEEEECCCCccccCHH
Confidence 4567999999988 7999999999999888643
No 39
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=76.04 E-value=2.1 Score=33.91 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.0
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeec
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPC 104 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~ 104 (486)
-++.|.||. |.+.+++|||.+++-+.-
T Consensus 9 P~v~v~I~G---q~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 9 PTTIVLIND---TPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp CEEEEEETT---EEEEEEECTTCSSCEEEH
T ss_pred CEEEEEECC---EEEEEEeccCCCcEEEcc
Confidence 467899998 899999999999999873
No 40
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=74.68 E-value=2.5 Score=33.17 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.8
Q ss_pred EEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 76 TLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 76 ~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
++.|.||. |.+.+++|||.+++-+.-.
T Consensus 10 ~vtvkI~G---q~~eaLLDTGAD~TVl~~~ 36 (99)
T 2hs1_A 10 LVTIKIGG---QLKEALLDTGADDTIIEEM 36 (99)
T ss_dssp EEEEEETT---EEEEEEECTTCSSEEESCC
T ss_pred EEEEEECC---EEEEEEeccCCCcEEEecc
Confidence 57899998 8999999999999998743
No 41
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=66.70 E-value=4.5 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.5
Q ss_pred EEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 76 TLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 76 ~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
++.+.||. |.+.+++|||.+++-+.-.
T Consensus 10 ~vti~I~G---q~~e~LLDTGAD~TVl~~~ 36 (99)
T 3ec0_A 10 VVTAYIEG---QPVEVLLDTGADDSIVAGI 36 (99)
T ss_dssp EEEEEETT---EEEEEEECTTCSSCEESSC
T ss_pred eEEEEECC---EEEEEEEecCCCceEEcCc
Confidence 67899998 8999999999999988643
No 42
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=65.99 E-value=4.7 Score=34.14 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=27.1
Q ss_pred CCCcEEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 71 PGSDYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 71 ~~~~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
....|++++.|.. +++.+++|||++.+.+...
T Consensus 21 ~~~~l~v~~~Ing---~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 21 QVTMLYINCKVNG---HPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp -CCCCEEEEEETT---EEEEEEECTTCSSCEEEHH
T ss_pred ccCEEEEEEEECC---EEEEEEEeCCCCcEeeCHH
Confidence 3446899999987 8999999999999999754
No 43
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=65.05 E-value=4.1 Score=34.18 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=24.8
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEc
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFAR 473 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~ 473 (486)
..|||..||+++-+..|+.+++|-|..
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~~ 135 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIAE 135 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEETT
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEcc
Confidence 379999999999999999999999864
No 44
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=60.45 E-value=6.4 Score=31.77 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=22.9
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
=++ |.||. |.+.+++|||.+++-+.-.
T Consensus 15 P~v-ikI~G---q~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 15 EIL-IFVNG---YPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EEE-EEETT---EEEEEEECTTCSSCEEEGG
T ss_pred CEE-EEECC---EEEEEEecCCCCcEEEccc
Confidence 345 99998 8999999999999988743
No 45
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=60.42 E-value=6.8 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.5
Q ss_pred EEEEEec---CCCCccEEEEEEcCCCeeeeecCC
Q 011401 76 TLSFSLG---GSASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 76 ~~~i~iG---tP~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
.++|.|| +| +|.+..++|||-+++-+.-.+
T Consensus 12 lvtikI~~~~~~-Gq~~eaLLDTGADdTVl~~~~ 44 (116)
T 3liy_A 12 VIKAQVDTQTSH-PKTIEALLDTGADMTVIPIAL 44 (116)
T ss_dssp EEEEEEECSSSC-CEEEEEEECTTBSSCEEEGGG
T ss_pred eEEEEEccccCC-CeEeEEEeccCCCccEEeccc
Confidence 5677777 55 799999999999999997543
No 46
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=60.20 E-value=4.8 Score=34.06 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=25.6
Q ss_pred ceeechhheeccEEEEeCCCCEEEEEcC
Q 011401 447 GATLGNYQQQGFEVVYDLEKGKVGFARR 474 (486)
Q Consensus 447 ~~ILG~~fl~~~~vvfD~~~~rIGfa~~ 474 (486)
..|||..||+.+-.+.|+++++|-|...
T Consensus 108 d~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 108 DMLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred CeeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 4799999999999999999999998764
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=51.89 E-value=12 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.2
Q ss_pred EEEEEecCCCCccEEEEEEcCCCeeeeecCC
Q 011401 76 TLSFSLGGSASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 76 ~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
.+.+.||. |.+..++|||-+++-+.-.+
T Consensus 11 ~vti~I~G---q~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLDD---KMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEETT---EEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEECC---EEEEEEEccCCCceEEeccc
Confidence 67799998 89999999999999987543
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=42.03 E-value=19 Score=29.68 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=24.7
Q ss_pred cEEEEEEecCCCCccEEEEEEcCCCeeeeecC
Q 011401 74 DYTLSFSLGGSASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 74 ~Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.-++.+.|+. |++.+++|||.+++-+.-.
T Consensus 22 RP~v~i~I~G---~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 22 EPRITLKVGG---QPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp SSEEEEEETT---EEEEEEECTTCSSCEECSC
T ss_pred CCEEEEEECC---EEEEEEEeCCCCeEEEccc
Confidence 3577899998 8999999999999988744
No 49
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=41.89 E-value=22 Score=32.12 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=28.8
Q ss_pred ccccCCCCCcEEE---EEEecCCC---CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTL---SFSLGGSA---SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~---~i~iGtP~---~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+....+|.+ .|.||.-. .....+++|||++++++|..
T Consensus 91 ~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~ 137 (241)
T 1lya_B 91 SYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVD 137 (241)
T ss_dssp EEEECSSBTTBEEEEEEEEETTSCEESTTCEEEEECTTCSSEEECHH
T ss_pred EEEECccccEEEEEEeEEEECCeeEeccCCCEEEEECCCccccCCHH
Confidence 3456655566766 46788730 24578999999999999865
No 50
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=40.12 E-value=17 Score=32.96 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=27.6
Q ss_pred cccCCCCCcEEEE---EEecCCC----CccEEEEEEcCCCeeeeecC
Q 011401 66 SLPLSPGSDYTLS---FSLGGSA----SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 66 ~~p~~~~~~Y~~~---i~iGtP~----~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.+|+....+|.++ |.||.-. .....++||||++++++|..
T Consensus 181 ~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~ 227 (239)
T 1b5f_A 181 YVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTA 227 (239)
T ss_dssp EEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHH
T ss_pred EEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHH
Confidence 3455445567765 6787620 23578999999999999854
No 51
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=35.75 E-value=25 Score=31.20 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.7
Q ss_pred EEEEEEecCCCCccEEEEEEcCCCeeeeec
Q 011401 75 YTLSFSLGGSASSPVSLYLDTGSDLVWLPC 104 (486)
Q Consensus 75 Y~~~i~iGtP~~q~~~v~iDTGS~~~Wv~~ 104 (486)
-.+.|.||. |.+.+++|||-+++-+.-
T Consensus 9 P~vtv~I~G---q~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIGG---QLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEETT---EEEEEEECTTCSSCEECS
T ss_pred CeEEEEECC---EEEEEEEecCCCceEEec
Confidence 468899999 899999999999998863
No 52
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=34.99 E-value=22 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=14.3
Q ss_pred ceEEccCCcceecCHH
Q 011401 332 GMVVDSGTTFTMLPAS 347 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~ 347 (486)
.++||||++.+++|..
T Consensus 29 ~v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 29 TVVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEEETTCCCEEEEBT
T ss_pred EEEEeCCCCceEEeEc
Confidence 5999999999999864
No 53
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=34.61 E-value=28 Score=33.13 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=28.3
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHH
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASL 348 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~ 348 (486)
+.+...|+..+ ..|.++ |+||.+.+ .++||||++.+++|..-
T Consensus 4 g~v~~~~~~~~----~~Y~~~---i~iG~Q~~---------------~v~~DTGSs~lWv~~~~ 45 (323)
T 1bxo_A 4 GVATNTPTAND----EEYITP---VTIGGTTL---------------NLNFDTGSADLWVFSTE 45 (323)
T ss_dssp EEEEEEECGGG----SCEEEE---EEETTEEE---------------EEEEETTCCCEEECBTT
T ss_pred CceeeeecCCC----CEEEEE---EEECCEEE---------------EEEEeCCCcceEEecCC
Confidence 45556666532 346654 67774433 48999999999999753
No 54
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=34.53 E-value=31 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHH
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASL 348 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~ 348 (486)
+.+.-+|+..+ ..|.++ |.||.+.+ .++||||++.+++|..-
T Consensus 3 ~~v~~~~~~~~----~~Y~~~---i~iG~Q~~---------------~v~~DTGSs~lWv~~~~ 44 (325)
T 1ibq_A 3 GSAVTTPQNND----EEYLTP---VTVGKSTL---------------HLDFDTGSADLWVFSDE 44 (325)
T ss_dssp EEEEEEECTTT----SCEEEE---EEEBTEEE---------------EEEEETTCCCEEEECTT
T ss_pred ceEEeEEcCCC----CEEEEE---EEECCEEE---------------EEEEeCCCccceEeeCC
Confidence 33445555422 356654 67774433 48999999999998753
No 55
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=33.54 E-value=27 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.9
Q ss_pred ccEEEEEEcCCCeeeeecCC
Q 011401 87 SPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 87 q~~~v~iDTGS~~~Wv~~~~ 106 (486)
|.+.+++|||-+++-+.-.+
T Consensus 30 q~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 30 VYITALLDSGADITIISEED 49 (124)
T ss_dssp EEEEEEECTTCSSCEEETTT
T ss_pred EEEEEEecCCCCcEEEeccc
Confidence 67899999999999997543
No 56
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=32.81 E-value=28 Score=33.25 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=28.9
Q ss_pred ccccCCCCCcEEEE---EEecCCC--CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGSA--SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP~--~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+....+|.++ |.||.-. .....++||||++++++|..
T Consensus 185 ~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~aiiDSGTs~~~lP~~ 230 (330)
T 1yg9_A 185 TYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIIDTSKAIIVGPKA 230 (330)
T ss_dssp EEEEBSCTTSCCEECSEEEETTEEEECTTCEEEECTTCSSEEEEHH
T ss_pred EEEECCCCCEEEEEeCeEEECCEEEcCCCcEEEEecCCccccCCHH
Confidence 34566555667664 7788720 24578999999999999965
No 57
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=32.00 E-value=33 Score=32.66 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=27.6
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHHH
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPASL 348 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~~ 348 (486)
+.+...|+..+ ..|.++ |.||.+.+ .++||||++.+++|..-
T Consensus 4 ~~v~~~~~~~~----~~Y~~~---i~iG~q~~---------------~v~~DTGSs~lWv~~~~ 45 (323)
T 1izd_A 4 GSVTTNPTSND----EEYITQ---VTVGDDTL---------------GLDFDTGSADLWVFSSQ 45 (323)
T ss_dssp EEEEEEECGGG----CCEEEE---EEETTEEE---------------EEEEETTCCCEEECBTT
T ss_pred CceeeeEcCCC----CEEEEE---EEECCEEE---------------EEEEcCCCcceEEecCC
Confidence 44455565432 346554 67773333 48999999999999753
No 58
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=30.64 E-value=43 Score=31.88 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=29.1
Q ss_pred ccccCC-CCCcEEEE---EEecCC--CCccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLS-PGSDYTLS---FSLGGS--ASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~-~~~~Y~~~---i~iGtP--~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+. ..++|.++ |.||.- ......++||||++++++|..
T Consensus 184 ~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~ 230 (329)
T 3c9x_A 184 AYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLLLDDN 230 (329)
T ss_dssp EEEECBCTTSSCEEEECCEEETTCCCCSCCEEEEECTTCCSEEECHH
T ss_pred EEEEccCCCceEEEEEeeEEECCEeccCCCceEEEECCCCcEeCCHH
Confidence 345665 35567775 568762 035689999999999999865
No 59
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=30.18 E-value=40 Score=32.48 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHH
Q 011401 284 EAEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPAS 347 (486)
Q Consensus 284 ~~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~ 347 (486)
.+.+...|+.... ...|.++ |.||. |+..+ .++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~~--~~~Y~~~---i~iGt-----P~q~~--------~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDFD--LEEYAIP---VSIGT-----PGQDF--------YLLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEETT--TTEEEEE---EEETT-----TTEEE--------EEEEETTCCCCEEEBT
T ss_pred CCccceEEeecCC--CCEEEEE---EEECC-----CCcEE--------EEEEcCCCCCeEECCC
Confidence 3566677876532 2356664 66762 22222 5899999999999865
No 60
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=29.77 E-value=44 Score=32.77 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.6
Q ss_pred ccccCCCCCcEEEE---EEecCCC---CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGSA---SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP~---~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.-+|+...++|.++ |.||.-. .....+++|||++++++|..
T Consensus 234 ~~~pv~~~~~w~v~l~~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~ 280 (383)
T 2x0b_A 234 HYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTS 280 (383)
T ss_dssp EEEEBSSTTSCEEEECEEEESSCCCBSTTCEEEEECTTCSSEEECHH
T ss_pred EEEEcCCCceEEEEEeEEEeCCceEEcCCCcEEEEcCCCceEEcCHH
Confidence 44566666677764 6788730 24578999999999999865
No 61
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=29.29 E-value=43 Score=31.75 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=28.4
Q ss_pred ccccCCCCCcEEE---EEEecCCC---CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTL---SFSLGGSA---SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~---~i~iGtP~---~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+....+|.+ .|.||.-. +....++||||++++++|..
T Consensus 181 ~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~ 227 (323)
T 3cms_A 181 HWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAILDTGTSKLVGPSS 227 (323)
T ss_dssp EEEECSSBTTBEEEEEEEEETTEEEESTTCEEEEECTTCCSEEECHH
T ss_pred EEEECccCCeEEEEEeeEEECCEEeecCCCcEEEEecCCccEeCCHH
Confidence 3456655566766 46787620 13568999999999999865
No 62
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=28.47 E-value=50 Score=31.32 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=29.1
Q ss_pred ccccCCCCCcEEE---EEEecCC----CCccEEEEEEcCCCeeeeecCC
Q 011401 65 VSLPLSPGSDYTL---SFSLGGS----ASSPVSLYLDTGSDLVWLPCHP 106 (486)
Q Consensus 65 ~~~p~~~~~~Y~~---~i~iGtP----~~q~~~v~iDTGS~~~Wv~~~~ 106 (486)
..+|+....+|.+ .|.||.- ......++||||++++++|..-
T Consensus 181 ~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~ 229 (329)
T 1htr_B 181 YWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQY 229 (329)
T ss_dssp EEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGG
T ss_pred EEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHH
Confidence 3456655566766 4677762 0245789999999999999763
No 63
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=27.00 E-value=53 Score=30.96 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=28.5
Q ss_pred ccccCCCCCcEEEE---EEecCC---CCccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGS---ASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP---~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+.....|.++ |.||.- .+....++||||++++++|-.
T Consensus 178 ~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~ 224 (320)
T 4aa9_A 178 HWVPVTLQQYWQFTVDSVTINGVAVACVGGCQAILDTGTSVLFGPSS 224 (320)
T ss_dssp EEEECSSBTTBEEEECEEEETTEEEESTTCEEEEECTTCSSEEEEHH
T ss_pred EEEEcccCCceEEEEeEEEECCEEeccCCCcEEEEECCCCcEECCHH
Confidence 34566555667664 567751 024578999999999999865
No 64
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=25.86 E-value=39 Score=32.92 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=28.1
Q ss_pred ccccCCCCCcEEEE--EEecCCCC-ccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS--FSLGGSAS-SPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~--i~iGtP~~-q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+....+|.+. |.||.- . ....++||||++++++|..
T Consensus 231 ~~~p~~~~~~w~v~l~i~v~g~-~~~~~~aiiDSGTs~~~lP~~ 273 (375)
T 1miq_A 231 TYEKLNHDLYWQIDLDVHFGKQ-TMEKANVIVDSGTTTITAPSE 273 (375)
T ss_dssp EEEEBSSSSSSEEEEEEEETTE-EEEEEEEEECTTBSSEEECHH
T ss_pred EEEecCCCceEEEEEEEEECCE-EcccceEEecCCCccEEcCHH
Confidence 34566555667665 677762 1 2468999999999999865
No 65
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=25.65 E-value=38 Score=32.60 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=28.6
Q ss_pred ccccCCCCCcEEEE---EEecCC---CCccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGS---ASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP---~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.-+|+....+|.+. |.||.- ......++||||++++++|..
T Consensus 193 ~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~ 239 (351)
T 1tzs_A 193 NWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVDTGTSLITGPSD 239 (351)
T ss_dssp EEEECSEETTEEEEEEEEEETTEEEECTTCEEEEECTTCSSEEECHH
T ss_pred EEEecCCCceEEEEeCEEEECCceEEcCCCceEEeccCCcceeCCHH
Confidence 34566555667764 678762 024578999999999999865
No 66
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=24.84 E-value=41 Score=34.15 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=27.2
Q ss_pred ccCCCCCcEEEE---EEecCC----CCccEEEEEEcCCCeeeeecC
Q 011401 67 LPLSPGSDYTLS---FSLGGS----ASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 67 ~p~~~~~~Y~~~---i~iGtP----~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
+|+...++|.++ |.||.- ......+++|||++++++|..
T Consensus 225 ~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~ 270 (478)
T 1qdm_A 225 VPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTA 270 (478)
T ss_dssp EEEEEETTEEEEECCEEETTEECSTTTTCEEEEECSSCCSEEECHH
T ss_pred EeccCCCeEEEEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHH
Confidence 455445567665 577752 024578999999999999854
No 67
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=23.18 E-value=57 Score=31.70 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=28.6
Q ss_pred ccccCCCCCcEEEE---EEecCC---CCccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGS---ASSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP---~~q~~~v~iDTGS~~~Wv~~~ 105 (486)
.-+|+....+|.+. |.||.- ......+++|||++++++|..
T Consensus 224 ~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 270 (370)
T 3psg_A 224 NWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTS 270 (370)
T ss_dssp EEEECSEETTEEEEECEEESSSSEEECTTCEEEEECTTCCSEEEEHH
T ss_pred eeecccccceeEEEEeEEEECCEEEecCCCceEEEcCCCCcEECCHH
Confidence 44566655667664 567762 024578999999999999865
No 68
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=23.18 E-value=51 Score=31.25 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred ccccCCCCCcEEEE---EEecCCC--CccEEEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPGSDYTLS---FSLGGSA--SSPVSLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~~~Y~~~---i~iGtP~--~q~~~v~iDTGS~~~Wv~~~ 105 (486)
..+|+....+|.++ |.||.-. .....++||||++++++|..
T Consensus 184 ~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~ 229 (329)
T 1dpj_A 184 TWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSG 229 (329)
T ss_dssp EEEECSSBTTBEEEEEEEEETTEEEECSSCEEEECTTCSCEEECHH
T ss_pred EEEEcCCCceEEEEeeeEEECCeEecCCCccEEeeCCCCcEECCHH
Confidence 34566555667664 5687620 13467999999999999865
No 69
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=22.54 E-value=66 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=14.3
Q ss_pred ceEEccCCcceecCHH
Q 011401 332 GMVVDSGTTFTMLPAS 347 (486)
Q Consensus 332 ~~iiDSGTt~t~lp~~ 347 (486)
.++||||++.+++|..
T Consensus 31 ~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 31 NLDFDTGSSDLWVFSS 46 (329)
T ss_dssp EEEEETTCCCEEECBT
T ss_pred EEEECCCCCCeEEecC
Confidence 5899999999999864
No 70
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=20.59 E-value=44 Score=32.84 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=25.3
Q ss_pred ccccCCCC--CcEEEE---EEecCC----C-CccE--------EEEEEcCCCeeeeecC
Q 011401 65 VSLPLSPG--SDYTLS---FSLGGS----A-SSPV--------SLYLDTGSDLVWLPCH 105 (486)
Q Consensus 65 ~~~p~~~~--~~Y~~~---i~iGtP----~-~q~~--------~v~iDTGS~~~Wv~~~ 105 (486)
...|+... ++|.++ |.||.- - +..+ .++||||+++++++..
T Consensus 218 ~~~Pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~ 276 (403)
T 3aup_A 218 AFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQS 276 (403)
T ss_dssp EEEECEECTTSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHH
T ss_pred eecccccCCCCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHH
Confidence 34566533 677775 567761 0 1112 2899999999999864
No 71
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=20.28 E-value=52 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=20.4
Q ss_pred eceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHH
Q 011401 307 EGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPAS 347 (486)
Q Consensus 307 ~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~ 347 (486)
..+.|+|+.+ .++||||...+.|++.
T Consensus 25 v~i~I~G~~~---------------~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 25 ITLKVGGQPV---------------TFLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEEETTEEE---------------EEEECTTCSSCEECSC
T ss_pred EEEEECCEEE---------------EEEEeCCCCeEEEccc
Confidence 3477888755 3899999999999863
No 72
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=20.24 E-value=76 Score=31.37 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=29.6
Q ss_pred CCeeEeecccCCCCCceeEEeeeceEEeeeeeeCCCCcccccCCCCCceEEccCCcceecCHH
Q 011401 285 AEFVYTDMLDNPKHPYFYSVGLEGISVGKRNIPAPGFLRRVDGQGYGGMVVDSGTTFTMLPAS 347 (486)
Q Consensus 285 ~~l~~tpl~~~~~~~~~y~v~l~~I~vgg~~l~~~~~~~~~~~~~~~~~iiDSGTt~t~lp~~ 347 (486)
..-...|+..+... ..|.++ |+||. |+..+ .++||||++++++|-+
T Consensus 6 ~~~~~~pv~~d~~~-~~Y~~~---i~iGT-----Ppq~~--------~v~~DTGS~~lWv~c~ 51 (413)
T 3vla_A 6 PSALVVPVKKDAST-LQYVTT---INQRT-----PLVSE--------NLVVDLGGRFLWVDCD 51 (413)
T ss_dssp CSEEEEEEEECTTT-CCEEEE---EEETT-----TTEEE--------EEEEETTCSSEEEECS
T ss_pred CccEEEEeeecCCC-CeEEEE---EEcCC-----CCcce--------EEEEeCCChhhhcccC
Confidence 34455787766432 346555 55653 33322 5999999999999853
Done!