Query 011402
Match_columns 486
No_of_seqs 255 out of 1900
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 8.7E-61 1.9E-65 488.8 44.6 393 16-435 14-429 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 6.8E-58 1.5E-62 469.4 40.7 308 69-435 114-449 (482)
3 cd05490 Cathepsin_D2 Cathepsin 100.0 4.2E-56 9.2E-61 441.9 32.0 306 71-431 2-325 (325)
4 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-55 2.6E-60 437.0 32.5 300 70-431 5-317 (317)
5 KOG1339 Aspartyl protease [Pos 100.0 3.3E-55 7.1E-60 445.5 36.3 343 68-434 39-396 (398)
6 cd05477 gastricsin Gastricsins 100.0 4.4E-55 9.5E-60 433.3 34.1 304 73-432 1-318 (318)
7 cd05486 Cathespin_E Cathepsin 100.0 2.3E-55 5E-60 434.8 29.3 296 76-431 1-316 (316)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-54 2.5E-59 431.2 33.0 302 74-434 2-325 (326)
9 cd06098 phytepsin Phytepsin, a 100.0 1.1E-54 2.3E-59 429.9 32.5 292 70-431 5-317 (317)
10 cd05487 renin_like Renin stimu 100.0 9E-55 2E-59 432.2 32.1 305 70-432 3-326 (326)
11 cd05472 cnd41_like Chloroplast 100.0 4.8E-54 1E-58 422.3 33.5 288 75-434 1-299 (299)
12 cd05485 Cathepsin_D_like Cathe 100.0 8.6E-54 1.9E-58 425.3 32.6 306 70-431 6-329 (329)
13 cd05488 Proteinase_A_fungi Fun 100.0 1.8E-53 3.9E-58 421.8 32.7 301 70-431 5-320 (320)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.4E-53 5.2E-58 432.6 33.1 301 70-433 134-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.8E-53 8.2E-58 430.2 30.8 299 70-433 133-449 (450)
16 cd05473 beta_secretase_like Be 100.0 9.7E-52 2.1E-56 416.5 31.1 312 75-435 3-348 (364)
17 cd05475 nucellin_like Nucellin 100.0 6.5E-50 1.4E-54 387.3 31.4 264 74-434 1-273 (273)
18 cd05489 xylanase_inhibitor_I_l 100.0 1.9E-49 4.1E-54 396.8 33.4 325 82-432 2-361 (362)
19 cd05476 pepsin_A_like_plant Ch 100.0 8.1E-50 1.8E-54 385.3 29.7 253 75-434 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 6.8E-50 1.5E-54 388.7 27.1 264 76-431 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.4E-49 3E-54 394.3 21.9 300 75-432 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.2E-48 4.8E-53 381.8 28.1 267 74-432 1-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 6.4E-45 1.4E-49 354.9 29.7 268 76-431 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 9.5E-29 2E-33 219.9 15.7 162 76-261 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2.6E-23 5.6E-28 184.9 15.1 151 278-431 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.7E-22 5.9E-27 166.4 12.1 108 78-223 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.9 2.3E-05 5E-10 62.6 6.5 94 74-225 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.6 0.0089 1.9E-07 50.1 7.5 95 72-224 8-102 (121)
29 cd05479 RP_DDI RP_DDI; retrope 96.6 0.011 2.5E-07 49.7 8.1 103 286-429 21-124 (124)
30 PF08284 RVP_2: Retroviral asp 96.0 0.034 7.4E-07 47.5 7.9 97 308-431 35-131 (135)
31 PF13650 Asp_protease_2: Aspar 95.7 0.075 1.6E-06 41.4 8.2 26 78-105 1-26 (90)
32 cd05479 RP_DDI RP_DDI; retrope 94.4 0.17 3.6E-06 42.5 7.3 32 72-105 13-44 (124)
33 cd05484 retropepsin_like_LTR_2 93.8 0.24 5.2E-06 39.0 6.6 29 76-106 1-29 (91)
34 PF11925 DUF3443: Protein of u 93.1 1.5 3.2E-05 43.4 11.9 30 76-105 24-58 (370)
35 cd06095 RP_RTVL_H_like Retrope 91.3 1.1 2.3E-05 34.9 7.2 26 79-106 2-27 (86)
36 PF12384 Peptidase_A2B: Ty3 tr 90.0 0.77 1.7E-05 39.8 5.5 84 307-419 47-132 (177)
37 TIGR03698 clan_AA_DTGF clan AA 89.0 2.8 6.1E-05 34.1 8.1 24 404-427 84-107 (107)
38 PF13975 gag-asp_proteas: gag- 87.9 0.89 1.9E-05 34.0 4.1 34 72-107 5-38 (72)
39 PF13650 Asp_protease_2: Aspar 85.8 1.1 2.5E-05 34.5 4.0 29 286-327 3-31 (90)
40 PF13975 gag-asp_proteas: gag- 84.4 1.8 3.9E-05 32.4 4.2 30 285-327 12-41 (72)
41 cd05484 retropepsin_like_LTR_2 82.9 2.1 4.5E-05 33.6 4.3 31 285-328 4-34 (91)
42 PF00077 RVP: Retroviral aspar 82.6 1.9 4.1E-05 34.3 4.0 28 77-106 7-34 (100)
43 TIGR02281 clan_AA_DTGA clan AA 82.2 2 4.3E-05 35.8 4.1 36 276-327 9-44 (121)
44 COG3577 Predicted aspartyl pro 81.4 4.9 0.00011 36.4 6.4 76 71-187 101-176 (215)
45 cd05483 retropepsin_like_bacte 79.4 3.7 8E-05 32.0 4.7 30 285-327 6-35 (96)
46 cd06095 RP_RTVL_H_like Retrope 77.8 3.3 7.1E-05 32.1 3.8 29 286-327 3-31 (86)
47 cd05482 HIV_retropepsin_like R 74.0 4.2 9.1E-05 31.7 3.4 25 79-105 2-26 (87)
48 COG3577 Predicted aspartyl pro 70.1 11 0.00023 34.3 5.4 36 276-327 103-138 (215)
49 PF02160 Peptidase_A3: Caulifl 69.3 4.4 9.6E-05 36.8 2.9 97 306-432 21-118 (201)
50 PF00077 RVP: Retroviral aspar 67.9 5.7 0.00012 31.5 3.1 26 285-323 9-34 (100)
51 cd06094 RP_Saci_like RP_Saci_l 67.1 44 0.00096 26.1 7.6 22 304-325 8-29 (89)
52 cd05481 retropepsin_like_LTR_1 59.8 11 0.00025 29.6 3.4 22 307-328 12-33 (93)
53 PF09668 Asp_protease: Asparty 56.5 14 0.0003 30.9 3.4 30 285-327 28-57 (124)
54 KOG0012 DNA damage inducible p 46.9 1E+02 0.0022 30.6 8.0 107 284-434 238-348 (380)
55 PF12384 Peptidase_A2B: Ty3 tr 44.2 30 0.00064 30.3 3.6 27 79-105 36-62 (177)
56 COG5550 Predicted aspartyl pro 41.8 19 0.00042 29.8 2.0 21 308-328 29-50 (125)
57 PF09668 Asp_protease: Asparty 39.7 48 0.001 27.7 4.1 37 73-111 22-58 (124)
58 TIGR03698 clan_AA_DTGF clan AA 39.3 38 0.00083 27.4 3.5 26 78-103 2-32 (107)
59 PRK14750 kdpF potassium-transp 36.7 47 0.001 19.8 2.5 22 464-485 5-26 (29)
60 cd05470 pepsin_retropepsin_lik 36.2 34 0.00073 27.3 2.7 18 306-323 12-29 (109)
61 cd05481 retropepsin_like_LTR_1 33.8 34 0.00074 26.9 2.3 18 87-104 9-26 (93)
62 PF08194 DIM: DIM protein; In 32.4 74 0.0016 20.2 3.1 15 9-23 8-22 (36)
63 PF10717 ODV-E18: Occlusion-de 29.0 54 0.0012 25.0 2.5 20 466-485 26-45 (85)
64 PF08139 LPAM_1: Prokaryotic m 27.6 82 0.0018 18.3 2.5 19 4-22 6-24 (25)
65 PF12575 DUF3753: Protein of u 27.2 90 0.0019 23.3 3.3 26 459-484 45-70 (72)
66 PF13956 Ibs_toxin: Toxin Ibs, 27.2 30 0.00065 18.2 0.6 12 5-16 2-13 (19)
67 cd05475 nucellin_like Nucellin 26.8 83 0.0018 30.0 4.1 32 74-105 157-194 (273)
68 cd00303 retropepsin_like Retro 26.2 1E+02 0.0022 22.1 3.8 21 307-327 11-31 (92)
69 PRK14748 kdpF potassium-transp 23.3 1.1E+02 0.0025 18.2 2.6 21 465-485 6-26 (29)
70 cd05480 NRIP_C NRIP_C; putativ 22.9 1E+02 0.0022 24.7 3.1 22 403-424 82-103 (103)
71 cd06097 Aspergillopepsin_like 21.3 85 0.0018 30.0 3.0 17 307-323 15-31 (278)
72 PF08284 RVP_2: Retroviral asp 20.9 1.3E+02 0.0028 25.5 3.7 29 74-104 20-48 (135)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=8.7e-61 Score=488.77 Aligned_cols=393 Identities=28% Similarity=0.467 Sum_probs=302.7
Q ss_pred HHhhccccCCceeEEeEeecCC------Cc----ccHHHHHHHhHHHHHHHhhc--cCcCCCCCCCCCCcccEEEEEEeC
Q 011402 16 TAAVGGVSSNHGVFSVKYRYAG------RE----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVGLYYAKIGIG 83 (486)
Q Consensus 16 ~a~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~r~~~~~~~--~~~p~~~~~~~~~~~~Y~~~i~iG 83 (486)
+.++.-+.....++++.|+.+. .. ..+.+..+|+++|.+++.+. ...|+.. +....++.|+++|+||
T Consensus 14 ~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Y~v~i~iG 92 (431)
T PLN03146 14 ELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGGEYLMNISIG 92 (431)
T ss_pred hhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCccEEEEEEcC
Confidence 3333344555577788766542 11 22444555666665554321 2223332 2234678999999999
Q ss_pred CCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCCCCCeeeEE
Q 011402 84 TPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEI 163 (486)
Q Consensus 84 tP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~~~~~~i~ 163 (486)
||||++.|++||||+++||+|.+|..|..+. ++.|||++|+||+.++|+++.|...+. ...|..++.|.|.+.
T Consensus 93 TPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 93 TPPVPILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDENTCTYSYS 165 (431)
T ss_pred CCCceEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCCCCCCeeEEE
Confidence 9999999999999999999999999998654 379999999999999999999976543 235766677999999
Q ss_pred eCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHHhhcCCCCcc
Q 011402 164 YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKM 243 (486)
Q Consensus 164 Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~ 243 (486)
|+||+.+.|.+++|+|+|++.... ...++++.|||++...+.|. ...+||||||++..+++.||..+ ++++
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~~--~~~~ 236 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGSS--IGGK 236 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhHh--hCCc
Confidence 999998899999999999875422 12356899999998776542 24789999999999999999763 5569
Q ss_pred eeEeccCC----CCCceEEeCCcCC---CCceEeeCCCC--CCceEEEEEEEEEcCEEeecCCcccccCCCCceEEeccC
Q 011402 244 FAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGT 314 (486)
Q Consensus 244 fS~~L~~~----~~~G~l~~Ggvd~---~~~~~~p~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGt 314 (486)
||+||.+. ...|.|+||+..+ ..+.|+|++.+ +.+|.|+|++|+||++.+.++...|...+..++||||||
T Consensus 237 FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGT 316 (431)
T PLN03146 237 FSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGT 316 (431)
T ss_pred EEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCc
Confidence 99999642 2479999999542 23889999843 368999999999999999887766643345679999999
Q ss_pred ceeecChhHHHHHHHHHHhhCCCCcccc-cCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcceEEc-CCeEEEEE
Q 011402 315 TLAYLPEMVYEPLVSKIISQQPDLKVHT-VHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGW 392 (486)
Q Consensus 315 t~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~-~~~~C~~i 392 (486)
++++||+++|+++.+++.+.+....... ......||..... ..+|+|+|+| +|+.+.||+++|+++. ++..|+++
T Consensus 317 t~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~ 393 (431)
T PLN03146 317 TLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAM 393 (431)
T ss_pred cceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEE
Confidence 9999999999999999887764322111 1124589864322 4689999999 7999999999999976 56689988
Q ss_pred eccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCCC
Q 011402 393 QNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCE 435 (486)
Q Consensus 393 ~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~~ 435 (486)
.... +.||||+.|||++|+|||++++|||||+++|+
T Consensus 394 ~~~~-------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 394 IPTS-------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred ecCC-------CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 7542 45999999999999999999999999999994
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6.8e-58 Score=469.43 Aligned_cols=308 Identities=20% Similarity=0.361 Sum_probs=252.3
Q ss_pred CCCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCC
Q 011402 69 RPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP 148 (486)
Q Consensus 69 ~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~ 148 (486)
.++.+.+|+++|+||||||+|+|++||||++|||++..|..| .|..++.|||++|+||+.+.+..
T Consensus 114 ~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~-----~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 114 LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSG-----GCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcc-----cccccCCCCccccCCcEecCCCC----------
Confidence 378899999999999999999999999999999999988632 23335699999999999843110
Q ss_pred CCCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCC-
Q 011402 149 LTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN- 227 (486)
Q Consensus 149 ~~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~- 227 (486)
+...+.+.|++|+ +.|.+++|+|++|+..++ ++.||++...++... ....+|||||||++.
T Consensus 179 -------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~i~--------~q~FG~a~~~s~~~f--~~~~~DGILGLg~~~~ 240 (482)
T PTZ00165 179 -------ESAETYIQYGTGE-CVLALGKDTVKIGGLKVK--------HQSIGLAIEESLHPF--ADLPFDGLVGLGFPDK 240 (482)
T ss_pred -------ccceEEEEeCCCc-EEEEEEEEEEEECCEEEc--------cEEEEEEEecccccc--ccccccceeecCCCcc
Confidence 0125789999998 689999999999986543 799999998755321 345789999999975
Q ss_pred --------CcHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCC------CceEeeCCCCCCceEEEEEEEEEcCE
Q 011402 228 --------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP------EVNKTPLVPNQPHYSINMTAVQVGLD 291 (486)
Q Consensus 228 --------~s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~------~~~~~p~~~~~~~~~v~l~~i~v~~~ 291 (486)
.+++++|++||+| +++||+||.+. ..+|+++|||+|+. ++.|+|+. ...+|+|.+++|+|+++
T Consensus 241 s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 241 DFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDGK 319 (482)
T ss_pred cccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECCE
Confidence 3689999999999 69999999864 45799999999853 47999997 57899999999999998
Q ss_pred EeecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCc
Q 011402 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSV 371 (486)
Q Consensus 292 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~ 371 (486)
.+.... ....+++||||+++++|++++++|.+++++. .+|. ..+.+|+|+|+| +|.
T Consensus 320 ~~~~~~------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------~~C~-----~~~~lP~itf~f-~g~ 375 (482)
T PTZ00165 320 SLGFCD------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE------------EDCS-----NKDSLPRISFVL-EDV 375 (482)
T ss_pred EeeecC------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc------------cccc-----ccccCCceEEEE-CCC
Confidence 775421 2457999999999999999999999987543 2573 335789999999 654
Q ss_pred -----EEEECCCcceEEc-----CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCCC
Q 011402 372 -----SLKVYPHEYLFPF-----EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCE 435 (486)
Q Consensus 372 -----~~~l~~~~yi~~~-----~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~~ 435 (486)
++.++|++|+.+. ++..|+ ++...+... ..++.||||++|||++|+|||++|+|||||+++|+
T Consensus 376 ~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~-~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 376 NGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPA-PRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred CCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCC-CCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 8999999999973 456895 888765422 22467999999999999999999999999999986
No 3
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=4.2e-56 Score=441.90 Aligned_cols=306 Identities=23% Similarity=0.377 Sum_probs=247.9
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011402 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (486)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (486)
+.+.+|+++|+||||||+++|++||||+++||+|..|..|. ..|..++.|+|++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceeeCC---------------
Confidence 45789999999999999999999999999999998886432 234445799999999998733
Q ss_pred CCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC--
Q 011402 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (486)
Q Consensus 151 ~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 228 (486)
+.|.+.|++|+ +.|.+++|+|+|++..++ ++.||+++.+.+... .....+||||||++..
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~~~~~--------~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 125 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGGLQVE--------GQLFGEAVKQPGITF--IAAKFDGILGMAYPRISV 125 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECCEEEc--------CEEEEEEeeccCCcc--cceeeeEEEecCCccccc
Confidence 69999999998 799999999999986543 789999988765321 3346899999999754
Q ss_pred ----cHHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeecC
Q 011402 229 ----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (486)
Q Consensus 229 ----s~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~ 296 (486)
+++++|++||.| +++||+||.+. ..+|+|+||++|++ ++.|+|+. .+.+|.|++++|.|+++....
T Consensus 126 ~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~- 203 (325)
T cd05490 126 DGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTLC- 203 (325)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeeec-
Confidence 588999999999 69999999864 24699999999975 47899987 567999999999998864321
Q ss_pred CcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEEC
Q 011402 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (486)
Q Consensus 297 ~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (486)
.....++|||||+++++|++++++|.+++++.. .....+.++|. ....+|+|+|+| +|+.++|+
T Consensus 204 ------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~----~~~~~~~~~C~-----~~~~~P~i~f~f-gg~~~~l~ 267 (325)
T cd05490 204 ------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAVP----LIQGEYMIDCE-----KIPTLPVISFSL-GGKVYPLT 267 (325)
T ss_pred ------CCCCEEEECCCCccccCCHHHHHHHHHHhCCcc----ccCCCEEeccc-----ccccCCCEEEEE-CCEEEEEC
Confidence 224579999999999999999999999986531 11223446774 335689999999 99999999
Q ss_pred CCcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 377 PHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 377 ~~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
|++|+++. +...|+ +++..+... .+...||||++|||++|+|||++++|||||+
T Consensus 268 ~~~y~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 268 GEDYILKVSQRGTTICLSGFMGLDIPP-PAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred hHHeEEeccCCCCCEEeeEEEECCCCC-CCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999875 335796 676544322 2246899999999999999999999999995
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-55 Score=436.98 Aligned_cols=300 Identities=26% Similarity=0.424 Sum_probs=250.1
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (486)
++.+..|+++|+||||||++.|+|||||+++||+|..|..|. |..++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceeeCC--------------
Confidence 567899999999999999999999999999999998886432 3345799999999999854
Q ss_pred CCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-
Q 011402 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (486)
Q Consensus 150 ~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (486)
+.|.+.|++|+ +.|.+++|+|+|++..++ ++.|||+....+.+. .....+||||||++..
T Consensus 66 --------~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~--------~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s 126 (317)
T cd05478 66 --------QPLSIQYGTGS-MTGILGYDTVQVGGISDT--------NQIFGLSETEPGSFF--YYAPFDGILGLAYPSIA 126 (317)
T ss_pred --------cEEEEEECCce-EEEEEeeeEEEECCEEEC--------CEEEEEEEecCcccc--ccccccceeeeccchhc
Confidence 68999999998 799999999999986543 799999987765542 2345799999998743
Q ss_pred -----cHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeecCC
Q 011402 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (486)
Q Consensus 229 -----s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~ 297 (486)
+++++|++||+| +++||+||.+. ..+|.|+|||+|++ ++.|+|+. .+.+|.|.++++.|+++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC-
Confidence 589999999999 69999999975 35689999999965 47899997 5789999999999999987532
Q ss_pred cccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECC
Q 011402 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (486)
Q Consensus 298 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~ 377 (486)
.+..++|||||+++++|++++++|.+++++.... ...+.++|. ....+|.|+|+| +|++++|||
T Consensus 205 ------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~----~~~~~~~C~-----~~~~~P~~~f~f-~g~~~~i~~ 268 (317)
T cd05478 205 ------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQ----NGEMVVNCS-----SISSMPDVVFTI-NGVQYPLPP 268 (317)
T ss_pred ------CCCEEEECCCchhhhCCHHHHHHHHHHhCCcccc----CCcEEeCCc-----CcccCCcEEEEE-CCEEEEECH
Confidence 2457999999999999999999999998665321 122335663 345689999999 999999999
Q ss_pred CcceEEcCCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 378 ~~yi~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
++|+.+. ...|+ +|+..+. .+.||||++|||++|+|||++++|||||+
T Consensus 269 ~~y~~~~-~~~C~~~~~~~~~-----~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 269 SAYILQD-QGSCTSGFQSMGL-----GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHheecC-CCEEeEEEEeCCC-----CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999876 56886 6766431 36799999999999999999999999996
No 5
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-55 Score=445.55 Aligned_cols=343 Identities=35% Similarity=0.625 Sum_probs=283.3
Q ss_pred CCCCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC-CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011402 68 SRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (486)
Q Consensus 68 ~~~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~-~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~ 146 (486)
...+..++|+++|.||||||+|.|++||||+++||+|..|. .|..+.. ..|||++|+|++.+.|.++.|.....
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCcccccccc
Confidence 34567889999999999999999999999999999999999 7986432 34999999999999999999998764
Q ss_pred CCCCCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCC
Q 011402 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (486)
Q Consensus 147 ~~~~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (486)
. |..++.|.|.+.|+||+.++|++++|+|++++.+ ...++++.|||+..+.+. .... .+.+||||||++
T Consensus 114 ~----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~ 182 (398)
T KOG1339|consen 114 S----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRG 182 (398)
T ss_pred C----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCCC
Confidence 3 8889999999999998789999999999999853 123457999999998775 2112 578999999999
Q ss_pred CCcHHHHHhhcCCCCcceeEeccCCC----CCceEEeCCcCCCC----ceEeeCCCCCC-ceEEEEEEEEEcCEEeecCC
Q 011402 227 NSSMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQPE----VNKTPLVPNQP-HYSINMTAVQVGLDFLNLPT 297 (486)
Q Consensus 227 ~~s~~~~L~~~g~i~~~fS~~L~~~~----~~G~l~~Ggvd~~~----~~~~p~~~~~~-~~~v~l~~i~v~~~~~~~~~ 297 (486)
..+++.|+...+...++||+||.+.+ .+|.|+||++|+++ +.|+|++.... +|.|.+++|.|+++. .++.
T Consensus 183 ~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~ 261 (398)
T KOG1339|consen 183 SLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGS 261 (398)
T ss_pred CccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCc
Confidence 99999999997777679999999862 47999999999874 77999995554 999999999999987 6665
Q ss_pred cccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECC
Q 011402 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (486)
Q Consensus 298 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~ 377 (486)
..+..+ ..++++||||++++||+++|++|.+++.+.+.. ......+...|+...... ..+|+|+|+|.+|+.+.+++
T Consensus 262 ~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 555433 688999999999999999999999999987410 112223456898655433 45899999994489999999
Q ss_pred CcceEEcCCe-E-EEEEeccCccccCCCCeeeechhhhceeEEEEECC-CCEEEEEe--CCC
Q 011402 378 HEYLFPFEDL-W-CIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLE-NQVIGWTE--YNC 434 (486)
Q Consensus 378 ~~yi~~~~~~-~-C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~rIg~a~--~~~ 434 (486)
++|+++.+.. . |+++..... ....||||+.|+|+++++||+. ++|||||+ ..|
T Consensus 339 ~~y~~~~~~~~~~Cl~~~~~~~----~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c 396 (398)
T KOG1339|consen 339 KNYLVEVSDGGGVCLAFFNGMD----SGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNC 396 (398)
T ss_pred cceEEEECCCCCceeeEEecCC----CCceEEEchHHhCCEEEEEeCCCCCEEEeccccccC
Confidence 9999987332 2 987665431 1158999999999999999999 99999999 666
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.4e-55 Score=433.32 Aligned_cols=304 Identities=26% Similarity=0.431 Sum_probs=249.4
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCC
Q 011402 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (486)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (486)
+..|+++|+||||||++.|+|||||+++||++..|..| .|..++.|||++|+|++..+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~-----~C~~~~~f~~~~SsT~~~~~----------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQ-----ACTNHTKFNPSQSSTYSTNG----------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCc-----cccccCCCCcccCCCceECC-----------------
Confidence 35899999999999999999999999999999888632 23345799999999999744
Q ss_pred CCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCC-----
Q 011402 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN----- 227 (486)
Q Consensus 153 ~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~----- 227 (486)
|.|++.|++|+ +.|.+++|+|++++..+ +++.|||+....+... .....+||||||++.
T Consensus 59 -----~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~i--------~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~~ 122 (318)
T cd05477 59 -----ETFSLQYGSGS-LTGIFGYDTVTVQGIII--------TNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISAGG 122 (318)
T ss_pred -----cEEEEEECCcE-EEEEEEeeEEEECCEEE--------cCEEEEEEEecccccc--cccceeeEeecCcccccccC
Confidence 79999999998 79999999999998654 3899999997654311 234579999999853
Q ss_pred -CcHHHHHhhcCCC-CcceeEeccCC--CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEEeecCCcc
Q 011402 228 -SSMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (486)
Q Consensus 228 -~s~~~~L~~~g~i-~~~fS~~L~~~--~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~ 299 (486)
.+++++|+++|.| +++||+||++. ..+|.|+||++|+++ +.|+|+. ...+|.|.++++.|+++.+....
T Consensus 123 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~-- 199 (318)
T cd05477 123 ATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWCS-- 199 (318)
T ss_pred CCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecccC--
Confidence 5799999999999 69999999874 246999999999764 7999987 56899999999999998875322
Q ss_pred cccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCc
Q 011402 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (486)
Q Consensus 300 ~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~ 379 (486)
.+..++|||||+++++|++++++|++++++.... ...+.++| .....+|+|+|+| +|+++.||+++
T Consensus 200 ----~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~----~~~~~~~C-----~~~~~~p~l~~~f-~g~~~~v~~~~ 265 (318)
T cd05477 200 ----QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ----YGQYVVNC-----NNIQNLPTLTFTI-NGVSFPLPPSA 265 (318)
T ss_pred ----CCceeeECCCCccEECCHHHHHHHHHHhCCcccc----CCCEEEeC-----CccccCCcEEEEE-CCEEEEECHHH
Confidence 2456999999999999999999999999765432 12333456 4446689999999 89999999999
Q ss_pred ceEEcCCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 380 YLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 380 yi~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
|+.+. ...|+ +|.+...+...+...||||++|||++|+|||++++|||||++
T Consensus 266 y~~~~-~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 266 YILQN-NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEecC-CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 99976 45784 887653322233457999999999999999999999999985
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.3e-55 Score=434.77 Aligned_cols=296 Identities=25% Similarity=0.422 Sum_probs=243.9
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011402 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (486)
Q Consensus 76 Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~--~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (486)
|+++|+||||||+++|+|||||+++||++..|. .|.. ++.|||++|+|++..+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------------ 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVSNG------------------ 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCcccccCC------------------
Confidence 899999999999999999999999999998886 4543 4689999999998854
Q ss_pred CCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-----
Q 011402 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (486)
Q Consensus 154 ~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 228 (486)
+.|.+.|++|+ +.|.+++|+|+|++..+. ++.||++..+.+... .....+||||||++..
T Consensus 56 ----~~~~i~Yg~g~-~~G~~~~D~v~ig~~~~~--------~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 56 ----EAFSIQYGTGS-LTGIIGIDQVTVEGITVQ--------NQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ----cEEEEEeCCcE-EEEEeeecEEEECCEEEc--------CEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 79999999998 799999999999986543 799999877654321 2346899999999754
Q ss_pred -cHHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEEeecCCcc
Q 011402 229 -SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (486)
Q Consensus 229 -s~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~ 299 (486)
+++++|++||+| +++||+||.+. ..+|.|+||++|+++ +.|+|+. +..+|.|.+++|+|+++.+..+
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC---
Confidence 478999999999 68999999864 247999999999764 8999987 5789999999999999876422
Q ss_pred cccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCc
Q 011402 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (486)
Q Consensus 300 ~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~ 379 (486)
....++|||||+++++|+++++++.+.+++... .+.+.++| ...+.+|+|+|+| +|+.++|+|++
T Consensus 197 ----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~C-----~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 197 ----DGCQAIVDTGTSLITGPSGDIKQLQNYIGATAT-----DGEYGVDC-----STLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ----CCCEEEECCCcchhhcCHHHHHHHHHHhCCccc-----CCcEEEec-----cccccCCCEEEEE-CCEEEEeCHHH
Confidence 245799999999999999999999888865421 12344567 3345689999999 99999999999
Q ss_pred ceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 380 YLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 380 yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
|++.. ++..|+ +|+...... ...+.||||++|||++|+|||++++|||||+
T Consensus 262 y~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 262 YTLEDQSDGGGYCSSGFQGLDIPP-PAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEecccCCCCEEeeEEEECCCCC-CCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 99875 356896 676654322 1245799999999999999999999999996
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-54 Score=431.20 Aligned_cols=302 Identities=28% Similarity=0.530 Sum_probs=246.1
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011402 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (486)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (486)
++|+++|+||||+|+++|+|||||+++||+|..|..|..+. ++.|+|++|+|++.+.|.+..|... ..|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~~-----~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCYC-----LSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCcccccc-----CcC-
Confidence 58999999999999999999999999999999999987543 3689999999999999999999531 234
Q ss_pred CCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC----c
Q 011402 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (486)
Q Consensus 154 ~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----s 229 (486)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+..+.+.+ .....+||||||+... +
T Consensus 71 ~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLF---LTQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcc---cccccceEEEccCCcccccCc
Confidence 45679999999999888999999999999865421 00011257899998877655 3456899999999763 2
Q ss_pred HHHHHhhcCCC-C--cceeEeccCCCCCceEEeCCcCCC--------------CceEeeCCCCCCceEEEEEEEEEcCEE
Q 011402 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQP--------------EVNKTPLVPNQPHYSINMTAVQVGLDF 292 (486)
Q Consensus 230 ~~~~L~~~g~i-~--~~fS~~L~~~~~~G~l~~Ggvd~~--------------~~~~~p~~~~~~~~~v~l~~i~v~~~~ 292 (486)
....|.+++.+ . ++||+||++ .+|.|+||++|++ ++.|+|+. .+.+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccc
Confidence 34456666665 3 899999986 5799999999863 46899987 458999999999999886
Q ss_pred eecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcE
Q 011402 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (486)
Q Consensus 293 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (486)
.... ......++|||||++++||+++++++.+++ |+|+|.|.+|++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~~ 269 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNLK 269 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCcE
Confidence 1100 123567999999999999999999988776 789999944899
Q ss_pred EEECCCcceEEcCCe-EEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCC
Q 011402 373 LKVYPHEYLFPFEDL-WCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (486)
Q Consensus 373 ~~l~~~~yi~~~~~~-~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~ 434 (486)
|+++|++|+++.++. +|+++... .+.+|||++|||++|+|||++++|||||+++|
T Consensus 270 ~~i~p~~y~~~~~~~~c~~~~~~~-------~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C 325 (326)
T cd06096 270 IDWKPSSYLYKKESFWCKGGEKSV-------SNKPILGASFFKNKQIIFDLDNNRIGFVESNC 325 (326)
T ss_pred EEECHHHhccccCCceEEEEEecC-------CCceEEChHHhcCcEEEEECcCCEEeeEcCCC
Confidence 999999999987444 45555432 35799999999999999999999999999999
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-54 Score=429.86 Aligned_cols=292 Identities=26% Similarity=0.429 Sum_probs=241.0
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC---CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~---~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~ 146 (486)
++.+..|+++|+||||||+++|+|||||+++||++..|. .|.. ++.|||++|+|++..+
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~~----------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-------HSKYKSSKSSTYKKNG----------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-------cCcCCcccCCCcccCC-----------
Confidence 677899999999999999999999999999999998885 4554 4699999999998743
Q ss_pred CCCCCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCC
Q 011402 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (486)
Q Consensus 147 ~~~~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (486)
..+.+.|++|+ +.|.+++|+|+|++..++ ++.||+++...+... .....+||||||++
T Consensus 67 -----------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~v~--------~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 67 -----------TSASIQYGTGS-ISGFFSQDSVTVGDLVVK--------NQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CEEEEEcCCce-EEEEEEeeEEEECCEEEC--------CEEEEEEEecCCccc--cccccceecccccc
Confidence 68999999998 799999999999986543 789999987654211 34568999999997
Q ss_pred CC------cHHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEE
Q 011402 227 NS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDF 292 (486)
Q Consensus 227 ~~------s~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~ 292 (486)
.. +++.+|++||+| +++||+||.+. ..+|.|+||++|+++ +.|+|+. ...+|.|.+++|+|+++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 53 578899999999 68999999864 347999999999875 7899997 567999999999999988
Q ss_pred eecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcE
Q 011402 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (486)
Q Consensus 293 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (486)
+.... ....+++||||+++++|+++++++. +.++|+. ...+|+|+|+| +|++
T Consensus 204 ~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~C~~-----~~~~P~i~f~f-~g~~ 255 (317)
T cd06098 204 TGFCA------GGCAAIADSGTSLLAGPTTIVTQIN----------------SAVDCNS-----LSSMPNVSFTI-GGKT 255 (317)
T ss_pred eeecC------CCcEEEEecCCcceeCCHHHHHhhh----------------ccCCccc-----cccCCcEEEEE-CCEE
Confidence 65432 2456999999999999998776553 2357842 24689999999 9999
Q ss_pred EEECCCcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 373 LKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 373 ~~l~~~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
++|+|++|+++. ....|+ +++..+... ...+.||||++|||++|+|||++++|||||+
T Consensus 256 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~-~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 256 FELTPEQYILKVGEGAAAQCISGFTALDVPP-PRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEEChHHeEEeecCCCCCEEeceEEECCCCC-CCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999999875 235796 676544222 2245799999999999999999999999995
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=9e-55 Score=432.23 Aligned_cols=305 Identities=22% Similarity=0.376 Sum_probs=250.3
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (486)
++.+..|+++|+||||+|+++|++||||+++||++..|..|. ..|..++.|||++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY---TACVTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc---hhhcccCcCCCCCCeeeeECC--------------
Confidence 567899999999999999999999999999999998886542 234556799999999999844
Q ss_pred CCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccC-CCCCCCCCCcceeeecCCCCC
Q 011402 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (486)
Q Consensus 150 ~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~~~ 228 (486)
|.|++.|++|+ +.|.+++|+|++++..+ ++.||++..... .+ .....+||||||++..
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~---------~~~fg~~~~~~~~~~---~~~~~dGilGLg~~~~ 124 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGGIPV---------TQMFGEVTALPAIPF---MLAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECCEEe---------eEEEEEEEeccCCcc---ceeecceEEecCChhh
Confidence 79999999998 89999999999997643 367999887542 22 2345899999998643
Q ss_pred ------cHHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEEee
Q 011402 229 ------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (486)
Q Consensus 229 ------s~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~ 294 (486)
+++++|++||.| +++||+||++. ...|.|+||++|+++ +.|+|+. ...+|.|.++++.|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 688999999999 69999999874 347999999999865 7899986 57899999999999998764
Q ss_pred cCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEE
Q 011402 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLK 374 (486)
Q Consensus 295 ~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~ 374 (486)
.+ .+..++|||||+++++|.++++++++++++... ...+.++| .....+|+|+|+| +|.+++
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~~C-----~~~~~~P~i~f~f-gg~~~~ 265 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKER-----LGDYVVKC-----NEVPTLPDISFHL-GGKEYT 265 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCccc-----CCCEEEec-----cccCCCCCEEEEE-CCEEEE
Confidence 22 245799999999999999999999999876542 22334566 3445689999999 999999
Q ss_pred ECCCcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 375 VYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 375 l~~~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
|++++|+++. .+..|+ +|+..+.+.. ..+.||||++|||++|+|||++++|||||++
T Consensus 266 v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 266 LSSSDYVLQDSDFSDKLCTVAFHAMDIPPP-TGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eCHHHhEEeccCCCCCEEEEEEEeCCCCCC-CCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9999999986 356785 7776543222 2357999999999999999999999999985
No 11
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.8e-54 Score=422.33 Aligned_cols=288 Identities=30% Similarity=0.565 Sum_probs=237.2
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011402 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (486)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (486)
+|+++|+||||||++.|++||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999986543
Q ss_pred CCCCeeeEEeCCCCeEeEEEEEEEEEEecc-cCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHH
Q 011402 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKV-SGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQ 233 (486)
Q Consensus 155 ~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~-~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~ 233 (486)
|.|.+.|++|+.++|.+++|+|+|++. . ++++.|||+...++.+ ...+||||||++..+++.|
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~~--------~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~q 97 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSDV--------VPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQ 97 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCCc--------cCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHH
Confidence 278999999997899999999999975 3 3479999998876544 2589999999999999999
Q ss_pred HhhcCCCCcceeEeccCC--CCCceEEeCCcCC--CCceEeeCCCCC---CceEEEEEEEEEcCEEeecCCcccccCCCC
Q 011402 234 LASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNK 306 (486)
Q Consensus 234 L~~~g~i~~~fS~~L~~~--~~~G~l~~Ggvd~--~~~~~~p~~~~~---~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 306 (486)
|..+ .+++||+||.+. ..+|+|+||++|+ .++.|+|++.++ .+|.|++++|+|+++.+..++.. ....
T Consensus 98 l~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~ 172 (299)
T cd05472 98 TASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAG 172 (299)
T ss_pred hhHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCC
Confidence 8765 468999999864 4579999999998 579999998653 58999999999999988654321 2356
Q ss_pred ceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCC-ceeecCCCccCCCceEEEEECCCcEEEECCCcceEEc-
Q 011402 307 GTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEY-TCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF- 384 (486)
Q Consensus 307 ~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~- 384 (486)
.++|||||+++++|++++++|.+++.+...........+.+ .||..++.....+|+|+|+|.+|.+++||+++|+++.
T Consensus 173 ~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~ 252 (299)
T cd05472 173 GVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD 252 (299)
T ss_pred CeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec
Confidence 79999999999999999999999998765322111222233 4987665555679999999954899999999999843
Q ss_pred -CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCC
Q 011402 385 -EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (486)
Q Consensus 385 -~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~ 434 (486)
.+..|+++.... .+.+.||||+.|||++|+|||++++|||||+++|
T Consensus 253 ~~~~~C~~~~~~~----~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 253 DSSQVCLAFAGTS----DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCEEEEEeCCC----CCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 567899887653 1245799999999999999999999999999998
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=8.6e-54 Score=425.31 Aligned_cols=306 Identities=25% Similarity=0.368 Sum_probs=249.3
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (486)
++.+..|+++|+||||+|++.|++||||+++||+|..|..|. ..|..++.|+|++|+|++..+
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~Sst~~~~~-------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN---IACLLHNKYDSTKSSTYKKNG-------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC---ccccCCCeECCcCCCCeEECC--------------
Confidence 677899999999999999999999999999999998886432 124445789999999999854
Q ss_pred CCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-
Q 011402 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (486)
Q Consensus 150 ~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (486)
|.|.+.|++|+ +.|.+++|+++|++..++ ++.||++..+.+... .....+||||||++..
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~--------~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s 129 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGGVSVK--------GQTFAEAINEPGLTF--VAAKFDGILGMGYSSIS 129 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECCEEEC--------CEEEEEEEecCCccc--cccccceEEEcCCcccc
Confidence 79999999998 799999999999986543 789999987654211 3356899999999754
Q ss_pred -----cHHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeec
Q 011402 229 -----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (486)
Q Consensus 229 -----s~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 295 (486)
+++.+|++||+| +++||+||.+. ..+|.|+||++|++ ++.|+|+. .+.+|.|.++++.++++.+.
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~- 207 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC- 207 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec-
Confidence 467899999999 69999999864 24699999999975 47899997 57899999999999988653
Q ss_pred CCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEE
Q 011402 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (486)
Q Consensus 296 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (486)
..+..++|||||+++++|++++++|.+++++... ....+.++| .....+|+|+|+| +|+++.|
T Consensus 208 -------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~~~~~~~~C-----~~~~~~p~i~f~f-gg~~~~i 270 (329)
T cd05485 208 -------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI----IGGEYMVNC-----SAIPSLPDITFVL-GGKSFSL 270 (329)
T ss_pred -------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCccc----cCCcEEEec-----cccccCCcEEEEE-CCEEeEE
Confidence 2245699999999999999999999998865421 112233456 4445689999999 9999999
Q ss_pred CCCcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 376 YPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 376 ~~~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
+|++|+++. +...|+ +++..++.. ...+.||||++|||++|+|||++++|||||+
T Consensus 271 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~-~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 271 TGKDYVLKVTQMGQTICLSGFMGIDIPP-PAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ChHHeEEEecCCCCCEEeeeEEECcCCC-CCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999999975 346796 677644322 2245799999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.8e-53 Score=421.82 Aligned_cols=301 Identities=25% Similarity=0.442 Sum_probs=246.4
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~--~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~ 147 (486)
++.+..|+++|+||||+|++.|++||||+++||+|..|. .|.. ++.|+|++|+|++..+
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~~~------------ 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKANG------------ 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceeeCC------------
Confidence 566889999999999999999999999999999999886 3543 4699999999998743
Q ss_pred CCCCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCC
Q 011402 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (486)
Q Consensus 148 ~~~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (486)
|.+.+.|++|+ +.|.+++|+|++++..++ ++.||++..+.+... .....+||||||++.
T Consensus 66 ----------~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~--------~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 66 ----------TEFKIQYGSGS-LEGFVSQDTLSIGDLTIK--------KQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred ----------CEEEEEECCce-EEEEEEEeEEEECCEEEC--------CEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 79999999998 799999999999886543 789999987655321 234579999999976
Q ss_pred C------cHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeec
Q 011402 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (486)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 295 (486)
. +.+.+|++||+| +++||+||++. ...|.|+||++|++ ++.|+|++ ...+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 456789999999 69999999975 46799999999975 48999997 567999999999999987753
Q ss_pred CCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEE
Q 011402 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (486)
Q Consensus 296 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (486)
+ +..++|||||+++++|+++++++.+++++... ....+.++| .....+|.|+|+| +|+++.|
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~----~~~~~~~~C-----~~~~~~P~i~f~f-~g~~~~i 265 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS----WNGQYTVDC-----SKVDSLPDLTFNF-DGYNFTL 265 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc----cCCcEEeec-----cccccCCCEEEEE-CCEEEEE
Confidence 2 35699999999999999999999998865432 122233456 3345789999999 8999999
Q ss_pred CCCcceEEcCCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 376 YPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 376 ~~~~yi~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
||++|+++.. ..|+ .+....... ...+.||||++|||++|+|||++++|||||+
T Consensus 266 ~~~~y~~~~~-g~C~~~~~~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 266 GPFDYTLEVS-GSCISAFTGMDFPE-PVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CHHHheecCC-CeEEEEEEECcCCC-CCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 9999998754 4786 555543211 1135799999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.4e-53 Score=432.61 Aligned_cols=301 Identities=21% Similarity=0.328 Sum_probs=241.6
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (486)
++.+.+|+++|+||||||++.|+|||||+++||+|..|..| .|..++.|||++|+|++..+
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~-----~C~~~~~yd~s~SsT~~~~~-------------- 194 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTE-----GCETKNLYDSSKSKTYEKDG-------------- 194 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcc-----cccCCCccCCccCcceEECC--------------
Confidence 56788999999999999999999999999999999888632 23345699999999998854
Q ss_pred CCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-
Q 011402 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (486)
Q Consensus 150 ~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (486)
+.|.+.|++|+ +.|.+++|+|+||+..++ ..|+++.+..+..........|||||||++..
T Consensus 195 --------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~v~---------~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 195 --------TKVEMNYVSGT-VSGFFSKDLVTIGNLSVP---------YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred --------CEEEEEeCCCC-EEEEEEEEEEEECCEEEE---------EEEEEEEeccCcccccccccccceecccCCccc
Confidence 68999999998 899999999999986432 46888776544100003346899999999764
Q ss_pred -----cHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeecCC
Q 011402 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (486)
Q Consensus 229 -----s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~ 297 (486)
+++.+|++||+| +++||+||.+. ...|.|+|||+|++ ++.|+|+. +..+|.|.++ +.+++...
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~---- 330 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS---- 330 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec----
Confidence 578899999999 68999999864 45799999999976 47899996 5679999998 47765432
Q ss_pred cccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECC
Q 011402 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (486)
Q Consensus 298 ~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~ 377 (486)
....+++||||+++++|+++++++.+++++.... ....+.++|+. ..+|+++|.| +|..++|||
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~---~~~~y~~~C~~------~~lP~~~f~f-~g~~~~L~p 394 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVP---FLPLYVTTCNN------TKLPTLEFRS-PNKVYTLEP 394 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCeecC---CCCeEEEeCCC------CCCCeEEEEE-CCEEEEECH
Confidence 2457999999999999999999999998653211 11223356742 4589999999 899999999
Q ss_pred CcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCC
Q 011402 378 HEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (486)
Q Consensus 378 ~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~ 433 (486)
++|+.+. ....|+ ++++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGSALCMLNIIPIDL----EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCCcEEEEEEEECCC----CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999864 345796 6776541 13579999999999999999999999999986
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.8e-53 Score=430.24 Aligned_cols=299 Identities=20% Similarity=0.361 Sum_probs=239.5
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011402 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (486)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~--~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~ 147 (486)
++.+.+|+++|+||||||+++|+|||||+++||++..|. .|. .++.|||++|+|++..+
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~-------~~~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCS-------IKNLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccc-------cCCCccCccCcccccCC------------
Confidence 567889999999999999999999999999999999886 354 34699999999998854
Q ss_pred CCCCCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCC
Q 011402 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (486)
Q Consensus 148 ~~~~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (486)
+.|.+.|++|+ +.|.+++|+|++|+...+ ..|+++.+.............|||||||++.
T Consensus 194 ----------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~---------~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 194 ----------TKVDITYGSGT-VKGFFSKDLVTLGHLSMP---------YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECCEEEc---------cEEEEEEeccccccceecccccceecccCCc
Confidence 69999999998 899999999999986532 4688876553210000234689999999975
Q ss_pred C------cHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEEeec
Q 011402 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (486)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~ 295 (486)
. +++.+|++||+| +++||+||.+. ...|.|+|||+|+++ +.|+|+. ...+|.|.++ +.++....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec--
Confidence 4 688999999999 58999999864 457999999999764 7899996 5679999998 66654332
Q ss_pred CCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEE
Q 011402 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (486)
Q Consensus 296 ~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (486)
....+++||||+++++|+++++++++++++.... ....+..+|+ . ..+|+|+|.| +|.+++|
T Consensus 330 --------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~---~~~~y~~~C~-----~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 330 --------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP---FLPFYVTTCD-----N-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred --------cccceEECCCCccccCCHHHHHHHHHHhCCeecC---CCCeEEeecC-----C-CCCCeEEEEE-CCEEEEE
Confidence 1456999999999999999999999988654211 1122345673 2 4689999999 8999999
Q ss_pred CCCcceEEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCC
Q 011402 376 YPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (486)
Q Consensus 376 ~~~~yi~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~ 433 (486)
+|++|+.+. ++..|+ ++.+.+. +.+.||||++|||++|+|||++++|||||+++
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDI----DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCC----CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999753 456896 7765431 23579999999999999999999999999974
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=9.7e-52 Score=416.49 Aligned_cols=312 Identities=24% Similarity=0.339 Sum_probs=239.0
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011402 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (486)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (486)
.|+++|+||||+|++.|+|||||+++||+|..|..| ++.|||++|+|++..+
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~------------------- 54 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLG------------------- 54 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCC-------------------
Confidence 699999999999999999999999999999876332 3589999999999865
Q ss_pred CCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC------
Q 011402 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (486)
Q Consensus 155 ~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 228 (486)
|.|++.|++|+ +.|.+++|+|+|++.. .+ ...+.|+++....+.+. .....+||||||++.+
T Consensus 55 ---~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 55 ---KGVTVPYTQGS-WEGELGTDLVSIPKGP--NV----TFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---ceEEEEECcce-EEEEEEEEEEEECCCC--cc----ceEEeeEEEecccccee--cccccceeeeecccccccCCCC
Confidence 69999999998 7999999999998631 10 00123555554433321 1235799999998653
Q ss_pred --cHHHHHhhcCCCCcceeEeccCC----------CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEE
Q 011402 229 --SMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDF 292 (486)
Q Consensus 229 --s~~~~L~~~g~i~~~fS~~L~~~----------~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~ 292 (486)
+++++|++|+.++++||+||+.. ..+|.|+||++|+++ +.|+|++ ...+|.|.+++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 68889999999888999988521 246999999999764 7899997 567899999999999998
Q ss_pred eecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccc---cCCCCceeecCCCccCCCceEEEEECC
Q 011402 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVTFHFEN 369 (486)
Q Consensus 293 ~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~f~f~g 369 (486)
+.++...+. ...+++||||+++++|++++++|.+++.++........ ..+.++|+.........+|+|+|+|.|
T Consensus 202 ~~~~~~~~~---~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 278 (364)
T cd05473 202 LNLDCKEYN---YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRD 278 (364)
T ss_pred ccccccccc---CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEcc
Confidence 875443221 24699999999999999999999999988753211111 112357865432222368999999954
Q ss_pred C-----cEEEECCCcceEEc----CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCCC
Q 011402 370 S-----VSLKVYPHEYLFPF----EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCE 435 (486)
Q Consensus 370 g-----~~~~l~~~~yi~~~----~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~~ 435 (486)
+ .++.|||++|+... .+..|+++.... ..+.||||+.|||++|+|||++++|||||+++|.
T Consensus 279 ~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-----~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 279 ENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ-----STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred CCCCceEEEEECHHHhhhhhccCCCcceeeEEeeec-----CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 2 47899999999864 246797532211 1356999999999999999999999999999996
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6.5e-50 Score=387.32 Aligned_cols=264 Identities=34% Similarity=0.690 Sum_probs=217.0
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCC-CCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCC
Q 011402 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (486)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~-~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (486)
++|+++|+||||||++.|++||||+++||+|. .|..| .
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------~----------------- 39 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------Q----------------- 39 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------c-----------------
Confidence 47999999999999999999999999999973 55444 1
Q ss_pred CCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHH
Q 011402 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (486)
Q Consensus 153 ~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 232 (486)
|.|.+.|+||+.+.|.+++|+|+++..... ..++++.|||+..+.+.+.. .....+||||||++..++++
T Consensus 40 -----c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 40 -----CDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred -----CccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 689999998888999999999999764322 12458999999876554321 33568999999999999999
Q ss_pred HHhhcCCCCcceeEeccCCCCCceEEeCCcCC--CCceEeeCCCC--CCceEEEEEEEEEcCEEeecCCcccccCCCCce
Q 011402 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ--PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGT 308 (486)
Q Consensus 233 ~L~~~g~i~~~fS~~L~~~~~~G~l~~Ggvd~--~~~~~~p~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 308 (486)
||+++++|+++||+||.+ ..+|.|+||+..+ ..+.|+|+..+ ..+|.|++.+|+||++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999998899999987 4578999996432 34899999855 4789999999999998542 235679
Q ss_pred EEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCC---cEEEECCCcceEEc-
Q 011402 309 IIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENS---VSLKVYPHEYLFPF- 384 (486)
Q Consensus 309 iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg---~~~~l~~~~yi~~~- 384 (486)
+|||||+++++|+++| +|+|+|+|.++ ++++|||++|+...
T Consensus 181 ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 181 VFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 9999999999999876 48899999433 79999999999875
Q ss_pred CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCC
Q 011402 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (486)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~ 434 (486)
.+..|+++..... ....+.||||+.|||++|+|||++++|||||+++|
T Consensus 226 ~~~~Cl~~~~~~~--~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 226 KGNVCLGILNGSE--IGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCEEEEEecCCC--cCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 5568998765431 11235799999999999999999999999999998
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.9e-49 Score=396.75 Aligned_cols=325 Identities=20% Similarity=0.339 Sum_probs=253.0
Q ss_pred eCCCCce-EEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCC---------CCC
Q 011402 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP---------LTD 151 (486)
Q Consensus 82 iGtP~q~-~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~---------~~~ 151 (486)
+|||-.+ +.|++||||+++||+|.+ .+|+||..++|+++.|....... ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788877 999999999999999853 35789999999999998654321 124
Q ss_pred CCCCCCCeeeEE-eCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcH
Q 011402 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM 230 (486)
Q Consensus 152 c~~~~~~~~~i~-Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 230 (486)
|. ++.|.|... |++|+.+.|++++|+|+|+...........++++.|||+....... .....|||||||++..|+
T Consensus 63 c~-~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG-NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC-CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 53 345888665 7899889999999999998643321111235689999998753211 123489999999999999
Q ss_pred HHHHhhcCCCCcceeEeccCC-CCCceEEeCCcCC----------CCceEeeCCCC---CCceEEEEEEEEEcCEEeecC
Q 011402 231 ISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLP 296 (486)
Q Consensus 231 ~~~L~~~g~i~~~fS~~L~~~-~~~G~l~~Ggvd~----------~~~~~~p~~~~---~~~~~v~l~~i~v~~~~~~~~ 296 (486)
+.||..++..+++||+||.+. ..+|.|+||+.+. ..+.|+|++.+ ..+|.|+|++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999988766678999999874 4579999999874 45899999865 368999999999999999876
Q ss_pred Ccccc--cCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCccccc--CCCCceeecCC----CccCCCceEEEEEC
Q 011402 297 TDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV--HDEYTCFQYSE----SVDEGFPNVTFHFE 368 (486)
Q Consensus 297 ~~~~~--~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~--~~~~~C~~~~~----~~~~~~p~i~f~f~ 368 (486)
+..+. ..+..+++|||||++++||+++|++|.+++.+++........ .....||.... .....+|+|+|+|.
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 65443 234568999999999999999999999999877643221111 11147987532 22357999999995
Q ss_pred C-CcEEEECCCcceEEc-CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 369 N-SVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 369 g-g~~~~l~~~~yi~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
| |++++|||++|+++. ++..|++|...+.. ..+.||||+.|||++|+|||++++|||||+.
T Consensus 299 g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~---~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVKGGVACLAFVDGGSE---PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcCCCcEEEEEeeCCCC---CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 5 699999999999987 55689999876531 1357999999999999999999999999974
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=8.1e-50 Score=385.28 Aligned_cols=253 Identities=38% Similarity=0.728 Sum_probs=219.0
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011402 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (486)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (486)
.|+++|+||||||++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999985
Q ss_pred CCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHH
Q 011402 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (486)
Q Consensus 155 ~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L 234 (486)
|.|.+.|+||+.+.|.+++|+|+|++.. ..++++.|||+....+ + .....+||||||++..|++.||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 2688999999889999999999999862 0134899999998865 3 4567899999999999999999
Q ss_pred hhcCCCCcceeEeccCC---CCCceEEeCCcCC---CCceEeeCCCC---CCceEEEEEEEEEcCEEeecCCcccc--cC
Q 011402 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (486)
Q Consensus 235 ~~~g~i~~~fS~~L~~~---~~~G~l~~Ggvd~---~~~~~~p~~~~---~~~~~v~l~~i~v~~~~~~~~~~~~~--~~ 303 (486)
+.++ ++||+||.+. ..+|+|+||++|+ .++.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9987 8999999873 4579999999998 57999999865 57899999999999998876544332 23
Q ss_pred CCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcceEE
Q 011402 304 DNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFP 383 (486)
Q Consensus 304 ~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~ 383 (486)
....+++||||++++||++++ |+|+|+|.+|.++.+++++|+.+
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 467799999999999999987 78999994499999999999997
Q ss_pred c-CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCC
Q 011402 384 F-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (486)
Q Consensus 384 ~-~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~ 434 (486)
. .+..|+++.... ..+.||||++|||++|+|||++++|||||+++|
T Consensus 219 ~~~~~~C~~~~~~~-----~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 VGEGVVCLAILSSS-----SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCCCEEEEEecCC-----CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 6 567999887653 257899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.8e-50 Score=388.67 Aligned_cols=264 Identities=26% Similarity=0.426 Sum_probs=218.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011402 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (486)
Q Consensus 76 Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (486)
|+++|+||||||++.|+|||||+++||++..|..|.... +..|++++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~~-------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLLP-------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceecC--------------------
Confidence 899999999999999999999999999999998886432 4679999999998743
Q ss_pred CCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-------
Q 011402 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------- 228 (486)
Q Consensus 156 ~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 228 (486)
.+.|.+.|++|+.+.|.+++|+|+|++..+ +++.||+++..++.+. .....+||||||++..
T Consensus 56 -~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 -GATWSISYGDGSSASGIVYTDTVSIGGVEV--------PNQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CcEEEEEeCCCCeEEEEEEEEEEEECCEEE--------CCeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 368999999998789999999999998654 3789999998765322 3457899999999743
Q ss_pred --cHHHHHhhcCCCCcceeEeccCCCCCceEEeCCcCCC----CceEeeCCCCCCceEEEEEEEEEcCEEeecCCccccc
Q 011402 229 --SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302 (486)
Q Consensus 229 --s~~~~L~~~g~i~~~fS~~L~~~~~~G~l~~Ggvd~~----~~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~ 302 (486)
+++++|.+|+. +++||+||.+ ...|+|+|||+|++ ++.|+|+..+..+|.|++++|.|+++....
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------- 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------- 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-------
Confidence 57888998865 8899999987 56899999999975 489999986578999999999999874321
Q ss_pred CCCCceEEeccCceeecChhHHHHHHHHHH-hhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcce
Q 011402 303 GDNKGTIIDSGTTLAYLPEMVYEPLVSKII-SQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYL 381 (486)
Q Consensus 303 ~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~-~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi 381 (486)
.....++|||||+++++|.++++++.+++. +.+.. ....+.++| +. .+|+|+|+|
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~---~~~~~~~~C-----~~--~~P~i~f~~-------------- 251 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDS---EYGGWVFPC-----DT--TLPDLSFAV-------------- 251 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccC---CCCEEEEEC-----CC--CCCCEEEEE--------------
Confidence 235679999999999999999999999984 33221 122234556 33 289999998
Q ss_pred EEcCCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 382 FPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 382 ~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
.||||++|||++|+|||++|+|||||+
T Consensus 252 -----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 489999999999999999999999996
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.4e-49 Score=394.27 Aligned_cols=300 Identities=27% Similarity=0.516 Sum_probs=245.9
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011402 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (486)
Q Consensus 75 ~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (486)
.|+++|+||||+|+++|++||||+++||++..|..| ..|.....|++++|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----~~~~~~~~y~~~~S~t~~~~~------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----SSCASSGFYNPSKSSTFSNQG------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----THHCTSC-BBGGGSTTEEEEE-------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----cccccccccccccccccccce-------------------
Confidence 599999999999999999999999999999999876 122334699999999999865
Q ss_pred CCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCC-------C
Q 011402 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS-------N 227 (486)
Q Consensus 155 ~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~-------~ 227 (486)
+.+.+.|++|+ ++|.+++|+|+|++..+. ++.||++....+... .....+||||||++ .
T Consensus 58 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~--------~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ---KPFSISYGDGS-VSGNLVSDTVSIGGLTIP--------NQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEETTEE-EEEEEEEEEEEETTEEEE--------EEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeccCcc-cccccccceEeeeecccc--------ccceecccccccccc--ccccccccccccCCcccccccC
Confidence 68999999999 999999999999987543 789999998644211 23568999999974 3
Q ss_pred CcHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCCC----ceEeeCCCCCCceEEEEEEEEEcCEEeecCCcccc
Q 011402 228 SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301 (486)
Q Consensus 228 ~s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~~----~~~~p~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~ 301 (486)
.+++++|+++|+| +++||+||++. ...|.|+||++|+++ +.|+|+. ...+|.|.+++|.++++....
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~------ 196 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS------ 196 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE------
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc------
Confidence 5899999999999 69999999985 356999999999775 7899998 788999999999999983321
Q ss_pred cCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcce
Q 011402 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYL 381 (486)
Q Consensus 302 ~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi 381 (486)
.....++||||++++++|.+++++|++++++.... .++..+|+....+|.++|.| ++.+++|||++|+
T Consensus 197 -~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~ 264 (317)
T PF00026_consen 197 -SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYI 264 (317)
T ss_dssp -EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHE
T ss_pred -ccceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecchHhc
Confidence 12345999999999999999999999999877532 23344445566789999999 8999999999999
Q ss_pred EEc---CCeEEE-EEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 382 FPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 382 ~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
.+. ....|. +|...+. ......+|||.+|||++|+|||+|++|||||+|
T Consensus 265 ~~~~~~~~~~C~~~i~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 265 FKIEDGNGGYCYLGIQPMDS--SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSEEEESEEEESS--TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccceeEeeeecccc--cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 987 233784 6666332 223578999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.2e-48 Score=381.77 Aligned_cols=267 Identities=26% Similarity=0.452 Sum_probs=224.7
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011402 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (486)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (486)
.+|+++|+||||+|++.|++||||+++||+
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-------------------------------------------------- 30 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP-------------------------------------------------- 30 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------
Confidence 379999999999999999999999999997
Q ss_pred CCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCC-----
Q 011402 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (486)
Q Consensus 154 ~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 228 (486)
.|++.|++|+.+.|.+++|+|++++..+ +++.|||++... ..+||||||++..
T Consensus 31 -----~~~~~Y~~g~~~~G~~~~D~v~~g~~~~--------~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~ 88 (295)
T cd05474 31 -----DFSISYGDGTSASGTWGTDTVSIGGATV--------KNLQFAVANSTS---------SDVGVLGIGLPGNEATYG 88 (295)
T ss_pred -----eeEEEeccCCcEEEEEEEEEEEECCeEe--------cceEEEEEecCC---------CCcceeeECCCCCccccc
Confidence 3678899987799999999999998653 378999998742 2689999999775
Q ss_pred ------cHHHHHhhcCCC-CcceeEeccCC-CCCceEEeCCcCCCC----ceEeeCCCCC-----CceEEEEEEEEEcCE
Q 011402 229 ------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQ-----PHYSINMTAVQVGLD 291 (486)
Q Consensus 229 ------s~~~~L~~~g~i-~~~fS~~L~~~-~~~G~l~~Ggvd~~~----~~~~p~~~~~-----~~~~v~l~~i~v~~~ 291 (486)
+|+++|++||+| +++||+||++. ...|.|+||++|+++ +.|+|+..+. .+|.|.+++|.++++
T Consensus 89 ~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~ 168 (295)
T cd05474 89 TGYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGS 168 (295)
T ss_pred CCCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcC
Confidence 799999999999 69999999975 457999999999764 7899998653 679999999999998
Q ss_pred EeecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCc
Q 011402 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSV 371 (486)
Q Consensus 292 ~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~ 371 (486)
.+..+. ......++|||||++++||.+++++|.+++.+.+... ...+..+|+. ... |+|+|+| +|.
T Consensus 169 ~~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~~~~C~~-----~~~-p~i~f~f-~g~ 234 (295)
T cd05474 169 SGNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLYVVDCDA-----KDD-GSLTFNF-GGA 234 (295)
T ss_pred CCcccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEEEEeCCC-----CCC-CEEEEEE-CCe
Confidence 864321 1345789999999999999999999999998765421 2234456743 333 9999999 889
Q ss_pred EEEECCCcceEEcC-----CeEE-EEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 372 SLKVYPHEYLFPFE-----DLWC-IGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 372 ~~~l~~~~yi~~~~-----~~~C-~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
+++||+++|+++.. +..| ++|.+.. .+.||||++|||++|+|||++++|||||++
T Consensus 235 ~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~------~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 235 TISVPLSDLVLPASTDDGGDGACYLGIQPST------SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEEHHHhEeccccCCCCCCCeEEEEEeCC------CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99999999998762 5678 5887764 267999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.4e-45 Score=354.89 Aligned_cols=268 Identities=32% Similarity=0.596 Sum_probs=223.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011402 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (486)
Q Consensus 76 Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (486)
|+++|.||||+|++.|++||||+++||+|..|..|..+.. ....|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~~---------------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYKD---------------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceeec----------------------
Confidence 7899999999999999999999999999999987765431 011277777777665
Q ss_pred CCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCC------Cc
Q 011402 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (486)
Q Consensus 156 ~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 229 (486)
+.|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||++.....+ .....+||||||++. .+
T Consensus 56 ~~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~~--------~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 TGCTFSITYGDGS-VTGGLGTDTVTIGGLTI--------PNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred CCCEEEEEECCCe-EEEEEEEeEEEECCEEE--------eceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 3479999999987 79999999999998653 379999999887533 345789999999988 79
Q ss_pred HHHHHhhcCCC-CcceeEeccCC---CCCceEEeCCcCCC----CceEeeCCCC-CCceEEEEEEEEEcCEEeecCCccc
Q 011402 230 MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPN-QPHYSINMTAVQVGLDFLNLPTDVF 300 (486)
Q Consensus 230 ~~~~L~~~g~i-~~~fS~~L~~~---~~~G~l~~Ggvd~~----~~~~~p~~~~-~~~~~v~l~~i~v~~~~~~~~~~~~ 300 (486)
++++|.++++| +++||+||.+. ...|.|+||++|++ ++.|+|++.. ..+|.|.+++|.|+++....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----- 198 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----- 198 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee-----
Confidence 99999999999 69999999984 47899999999975 5899999965 77899999999999875111
Q ss_pred ccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcc
Q 011402 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEY 380 (486)
Q Consensus 301 ~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~y 380 (486)
......++|||||++++||.+++++|++++.+.... ...|+...+...+.+|+|+|+|
T Consensus 199 -~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f------------- 256 (283)
T cd05471 199 -SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF------------- 256 (283)
T ss_pred -cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE-------------
Confidence 234567999999999999999999999999877642 1234444445567899999999
Q ss_pred eEEcCCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 381 LFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 381 i~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
.+|||++|||++|++||++++|||||+
T Consensus 257 ------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 379999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=9.5e-29 Score=219.88 Aligned_cols=162 Identities=38% Similarity=0.716 Sum_probs=130.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011402 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (486)
Q Consensus 76 Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (486)
|+++|.||||+|++.|+|||||+.+|++|. .+.|+|.+|+||+.++|.++.|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999971 268999999999999999999998765422334557
Q ss_pred CCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHHh
Q 011402 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (486)
Q Consensus 156 ~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L~ 235 (486)
+.|.|.+.|++++.+.|.+++|+|+++...... ..+.++.|||+....+.+. ..+||||||+...||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~-----~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY-----GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST-----TEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc-----CCCcccccCCCcccHHHHHH
Confidence 889999999999999999999999999865332 2345899999999886552 69999999999999999998
Q ss_pred hcCCCCcceeEeccC--CCCCceEEeCC
Q 011402 236 SSGGVRKMFAHCLDG--INGGGIFAIGH 261 (486)
Q Consensus 236 ~~g~i~~~fS~~L~~--~~~~G~l~~Gg 261 (486)
++ ..+.||+||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 56899999998 26789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=2.6e-23 Score=184.86 Aligned_cols=151 Identities=32% Similarity=0.586 Sum_probs=117.3
Q ss_pred ceEEEEEEEEEcCEEeecCCccccc-CCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCc----ccccCCCCceeec
Q 011402 278 HYSINMTAVQVGLDFLNLPTDVFGV-GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK----VHTVHDEYTCFQY 352 (486)
Q Consensus 278 ~~~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~----~~~~~~~~~C~~~ 352 (486)
+|.|++.+|+||++.+.++...|+. ++..+++|||||++++||+++|+++.+++.+...... .........||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999999887743 3467899999999999999999999999987754332 1223345689998
Q ss_pred CC----CccCCCceEEEEECCCcEEEECCCcceEEc-CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEE
Q 011402 353 SE----SVDEGFPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVI 427 (486)
Q Consensus 353 ~~----~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rI 427 (486)
+. .....+|+|+|+|.+|++++|++++|++.. ++..|++|.... .+..+..|||..+|+++.++||++++||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~---~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSD---ADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEET---STTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccC---CCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 87 355789999999977999999999999987 678999998871 1235789999999999999999999999
Q ss_pred EEEe
Q 011402 428 GWTE 431 (486)
Q Consensus 428 g~a~ 431 (486)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=2.7e-22 Score=166.43 Aligned_cols=108 Identities=34% Similarity=0.592 Sum_probs=90.5
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCcc-CCCCCCccceecCCCcccCCCCCCCCCCCCCCC
Q 011402 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (486)
Q Consensus 78 ~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f-~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~ 156 (486)
++|.||||||++.|+|||||+++||+|..|..|..+. +..| +|+.|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~~~--------------------- 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSDNG--------------------- 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCCCC---------------------
Confidence 4799999999999999999999999999998775432 2456 999999988754
Q ss_pred CCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeec
Q 011402 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (486)
Q Consensus 157 ~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGL 223 (486)
|.|.+.|++|+ +.|.+++|+|+|++... +++.|||++...+.+. .....+|||||
T Consensus 55 -~~~~~~Y~~g~-~~g~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 55 -CTFSITYGTGS-LSGGLSTDTVSIGDIEV--------VGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred -cEEEEEeCCCe-EEEEEEEEEEEECCEEE--------CCEEEEEEEecCCccc--cccccccccCC
Confidence 79999999997 78999999999988653 3799999998876532 33568999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.94 E-value=2.3e-05 Score=62.64 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011402 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (486)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (486)
+.|++++.|+ ++++++++|||++.+|+.......+. . ...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~----------~-------~~~--------------------- 40 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG----------L-------PLT--------------------- 40 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC----------C-------Ccc---------------------
Confidence 3689999999 69999999999999999764211111 0 000
Q ss_pred CCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecCC
Q 011402 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (486)
Q Consensus 154 ~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 225 (486)
......+..++|.........+.+++|+...+ ++.+.+...... ..+||||+.+
T Consensus 41 --~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~--------~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANGRVRAARVRLDSLQIGGITLR--------NVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCCCccceEEEcceEEECCcEEe--------ccEEEEeCCccc--------CCceEeChHH
Confidence 11356777788876666677899999986533 566666654321 3789999853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.61 E-value=0.0089 Score=50.08 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=61.1
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011402 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (486)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (486)
.++.|++++.|. ++++.++||||++.+-++..--... ..++..
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L-----------gl~~~~------------------------ 50 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL-----------GLDLNR------------------------ 50 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc-----------CCCccc------------------------
Confidence 578999999997 6899999999999998865321100 011110
Q ss_pred CCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCCCcceeeecC
Q 011402 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFG 224 (486)
Q Consensus 152 c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg 224 (486)
......+.-+.|......+.-|.+.+|+...+ |+.+.++... .+ .+|+||+.
T Consensus 51 ----~~~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~--------nv~~~v~~~~--~~-------~~~LLGm~ 102 (121)
T TIGR02281 51 ----LGYTVTVSTANGQIKAARVTLDRVAIGGIVVN--------DVDAMVAEGG--AL-------SESLLGMS 102 (121)
T ss_pred ----CCceEEEEeCCCcEEEEEEEeCEEEECCEEEe--------CcEEEEeCCC--cC-------CceEcCHH
Confidence 01234455566764445567899999987654 6776665421 11 36999983
No 29
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.59 E-value=0.011 Score=49.68 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=57.6
Q ss_pred EEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHHHHHHHhhCCCCc-ccccCCCCceeecCCCccCCCceEE
Q 011402 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK-VHTVHDEYTCFQYSESVDEGFPNVT 364 (486)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~p~i~ 364 (486)
+.|||..+. +++|||++.+.++.+.++++--...... ... ...+.....+. .......
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~g~~~~~-------g~~~~~~ 79 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGVGTQKIL-------GRIHLAQ 79 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecCCCcEEE-------eEEEEEE
Confidence 556777654 9999999999999997766432111000 000 00000111110 1113445
Q ss_pred EEECCCcEEEECCCcceEEcCCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEE
Q 011402 365 FHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGW 429 (486)
Q Consensus 365 f~f~gg~~~~l~~~~yi~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~ 429 (486)
+.+ +|..+.+ ++ .+.+.. ....|||.+||+.+-.+.|+.+++|-+
T Consensus 80 l~i-~~~~~~~---~~----------~Vl~~~------~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 80 VKI-GNLFLPC---SF----------TVLEDD------DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EEE-CCEEeee---EE----------EEECCC------CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 555 5544321 11 122211 234699999999999999999998853
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=95.99 E-value=0.034 Score=47.47 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=54.7
Q ss_pred eEEeccCceeecChhHHHHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcceEEcCCe
Q 011402 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDL 387 (486)
Q Consensus 308 ~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~~~~ 387 (486)
++||||+|-.++..+.+.++--.+.................| ....+.+.+.+ +|..+... ++
T Consensus 35 vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~-------~~~~~~~~~~i-~g~~~~~d---l~------ 97 (135)
T PF08284_consen 35 VLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINC-------EGVCPDVPLSI-QGHEFVVD---LL------ 97 (135)
T ss_pred EEEecCCCcEEccHHHHHhcCCEEEEccCeeEEecccccccc-------cceeeeEEEEE-CCeEEEee---eE------
Confidence 999999999999988655432111110000000000111112 12235566666 55444321 11
Q ss_pred EEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEe
Q 011402 388 WCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (486)
Q Consensus 388 ~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~ 431 (486)
.+ +.. .-..|||.++|+.+..+-|..+++|-|-.
T Consensus 98 -vl---~l~------~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 98 -VL---DLG------GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred -Ee---ccc------ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 11 111 23489999999999999999999999965
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.68 E-value=0.075 Score=41.39 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 011402 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (486)
Q Consensus 78 ~~i~iGtP~q~~~v~vDTGSs~~Wv~~~ 105 (486)
+++.|+ ++++++++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 357777 68999999999998887653
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.44 E-value=0.17 Score=42.55 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=27.8
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 011402 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (486)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~ 105 (486)
....+++++.|+ ++++++++|||++..++...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 456789999999 68999999999999988754
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.77 E-value=0.24 Score=38.99 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 011402 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (486)
Q Consensus 76 Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~ 106 (486)
|++++.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 699999999999999997643
No 34
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=93.14 E-value=1.5 Score=43.37 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=22.0
Q ss_pred EEEEEEeCCCC----ceE-EEEEEcCCCeeeEeCC
Q 011402 76 YYAKIGIGTPP----KDY-YVQVDTGSDIMWVNCI 105 (486)
Q Consensus 76 Y~~~i~iGtP~----q~~-~v~vDTGSs~~Wv~~~ 105 (486)
=++.|+|=-|+ |.+ +|+|||||.-|=|..+
T Consensus 24 p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 24 PTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred eeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 35566665544 777 8999999998877654
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.30 E-value=1.1 Score=34.85 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.2
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 011402 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (486)
Q Consensus 79 ~i~iGtP~q~~~v~vDTGSs~~Wv~~~~ 106 (486)
.+.|. ++++++++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35565 699999999999999997643
No 36
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=89.97 E-value=0.77 Score=39.83 Aligned_cols=84 Identities=14% Similarity=0.244 Sum_probs=48.6
Q ss_pred ceEEeccCceeecChhHHHHHHHHHHhhCCCCccc--ccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcceEEc
Q 011402 307 GTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVH--TVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF 384 (486)
Q Consensus 307 ~~iiDSGtt~~~lp~~~~~~l~~~i~~~~~~~~~~--~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~ 384 (486)
.++||||++......++.+.|--....... .... .......| ...-.+.|.. ++..++++. |+...
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~~~~app-~~fRG~vs~~~~~t--------sEAv~ld~~i-~n~~i~i~a--YV~d~ 114 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELPTHDAPP-FRFRGFVSGESATT--------SEAVTLDFYI-DNKLIDIAA--YVTDN 114 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCccccCCC-EEEeeeccCCceEE--------EEeEEEEEEE-CCeEEEEEE--EEecc
Confidence 399999999999999977766543322211 1110 00111234 2234566666 666666543 44321
Q ss_pred CCeEEEEEeccCccccCCCCeeeechhhhceeEEE
Q 011402 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVL 419 (486)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~v 419 (486)
- ....|+|.|+||.+=.+
T Consensus 115 -----------m------~~dlIIGnPiL~ryp~l 132 (177)
T PF12384_consen 115 -----------M------DHDLIIGNPILDRYPTL 132 (177)
T ss_pred -----------C------CcceEeccHHHhhhHHH
Confidence 1 24579999999987544
No 37
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.00 E-value=2.8 Score=34.09 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.7
Q ss_pred CeeeechhhhceeEEEEECCCCEE
Q 011402 404 NMTLLGDLVLSNKLVLYDLENQVI 427 (486)
Q Consensus 404 ~~~iLG~~fl~~~y~vfD~~~~rI 427 (486)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 467999999999999999987653
No 38
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.86 E-value=0.89 Score=34.04 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=29.3
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCC
Q 011402 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107 (486)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c 107 (486)
..+.+++++.|| ++.+..++|||++...|+...+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 467999999999 5999999999999998876543
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.85 E-value=1.1 Score=34.51 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
+.|||+.+. +++|||++.+.++.+.++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 567887654 99999999999999977665
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.37 E-value=1.8 Score=32.35 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.1
Q ss_pred EEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
.+.|+|..+. +++|||++...++.+.++++
T Consensus 12 ~~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 4667777664 99999999999999987776
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.90 E-value=2.1 Score=33.55 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHHH
Q 011402 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (486)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~ 328 (486)
.+.|||+.+. .++|||++.+.++.+.+.++-
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHhC
Confidence 4678888775 899999999999999877663
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.58 E-value=1.9 Score=34.33 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 011402 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (486)
Q Consensus 77 ~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~ 106 (486)
+.+|.|. ++++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4678888 589999999999998887643
No 43
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=82.24 E-value=2 Score=35.83 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCceEEEEEEEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 276 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
..+|.+. +.|||+++. .++|||++.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3456544 677888654 89999999999999977655
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=81.42 E-value=4.9 Score=36.38 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=55.0
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011402 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (486)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~~~~~~~~~~~~f~p~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (486)
..+|.|.++..|. +|++..++|||-+..-++..+-.. -.||.+..
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~l---------------------- 145 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNSL---------------------- 145 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCcccc----------------------
Confidence 4789999999998 799999999999998887543110 13443321
Q ss_pred CCCCCCCCeeeEEeCCCCeEeEEEEEEEEEEecccCC
Q 011402 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187 (486)
Q Consensus 151 ~c~~~~~~~~~i~Y~dg~~~~G~~~~D~v~ig~~~~~ 187 (486)
..++.+.-++|......+-.|.|.||+...+
T Consensus 146 ------~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~ 176 (215)
T COG3577 146 ------DYTITVSTANGRARAAPVTLDRVQIGGIRVK 176 (215)
T ss_pred ------CCceEEEccCCccccceEEeeeEEEccEEEc
Confidence 1356666788885555678999999987654
No 45
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=79.42 E-value=3.7 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.3
Q ss_pred EEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
.+.||++.+. +++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4667777664 99999999999999876655
No 46
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=77.83 E-value=3.3 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.9
Q ss_pred EEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 567888764 89999999999999988775
No 47
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.97 E-value=4.2 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.3
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCC
Q 011402 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (486)
Q Consensus 79 ~i~iGtP~q~~~v~vDTGSs~~Wv~~~ 105 (486)
.+.|+ +|.+++++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 79999999999999999753
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=70.14 E-value=11 Score=34.30 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCceEEEEEEEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 276 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
++||+++ ..|||+.+. .++|||.|.+.++++..+++
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 5678755 678999886 89999999999999966544
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=69.26 E-value=4.4 Score=36.78 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=51.3
Q ss_pred CceEEeccCceeecChhHH-HHHHHHHHhhCCCCcccccCCCCceeecCCCccCCCceEEEEECCCcEEEECCCcceEEc
Q 011402 306 KGTIIDSGTTLAYLPEMVY-EPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF 384 (486)
Q Consensus 306 ~~~iiDSGtt~~~lp~~~~-~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~~~~yi~~~ 384 (486)
..+++|||.+.......+. +.+++..... ........... ......+.+.+.+ ++..|.+|- +++.
T Consensus 21 ~~~~vDTGAt~C~~~~~iiP~e~we~~~~~---i~v~~an~~~~------~i~~~~~~~~i~I-~~~~F~IP~---iYq~ 87 (201)
T PF02160_consen 21 YHCYVDTGATICCASKKIIPEEYWEKSKKP---IKVKGANGSII------QINKKAKNGKIQI-ADKIFRIPT---IYQQ 87 (201)
T ss_pred EEEEEeCCCceEEecCCcCCHHHHHhCCCc---EEEEEecCCce------EEEEEecCceEEE-ccEEEeccE---EEEe
Confidence 3489999999988766654 1222221110 00000000000 0112345666667 666666652 2111
Q ss_pred CCeEEEEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeC
Q 011402 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (486)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~ 432 (486)
.. +-..|||.+|+|.++=-...+ .+|-|...
T Consensus 88 ---------~~-------g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 88 ---------ES-------GIDIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred ---------cC-------CCCEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 11 245899999999887666665 47777653
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=67.88 E-value=5.7 Score=31.48 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=21.7
Q ss_pred EEEEcCEEeecCCcccccCCCCceEEeccCceeecChhH
Q 011402 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMV 323 (486)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~ 323 (486)
.|.++|+.+. +++|||+..+.++.+.
T Consensus 9 ~v~i~g~~i~-------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK-------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE-------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE-------------EEEecCCCcceecccc
Confidence 4677788764 9999999999999874
No 51
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=67.07 E-value=44 Score=26.10 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.0
Q ss_pred CCCceEEeccCceeecChhHHH
Q 011402 304 DNKGTIIDSGTTLAYLPEMVYE 325 (486)
Q Consensus 304 ~~~~~iiDSGtt~~~lp~~~~~ 325 (486)
.+...++|||+....+|....+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3566899999999999987544
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=59.82 E-value=11 Score=29.62 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred ceEEeccCceeecChhHHHHHH
Q 011402 307 GTIIDSGTTLAYLPEMVYEPLV 328 (486)
Q Consensus 307 ~~iiDSGtt~~~lp~~~~~~l~ 328 (486)
.+.+|||++...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 3899999999999999877765
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=56.55 E-value=14 Score=30.94 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=23.8
Q ss_pred EEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHH
Q 011402 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l 327 (486)
.+++||+.+. |++|||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 4678998875 99999999999999987774
No 54
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=46.87 E-value=1e+02 Score=30.61 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=63.9
Q ss_pred EEEEEcCEEeecCCcccccCCCCceEEeccCceeecChhHHHHHH--HHHHhhCCCCcccccCCC-CceeecCCCccCCC
Q 011402 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV--SKIISQQPDLKVHTVHDE-YTCFQYSESVDEGF 360 (486)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGtt~~~lp~~~~~~l~--~~i~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~ 360 (486)
-++.+||..+. |.+|||+-++.+..+-.++.- +.|.....+.....+... .-| .
T Consensus 238 iN~~ing~~VK-------------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~----------I 294 (380)
T KOG0012|consen 238 INCEINGVPVK-------------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGR----------I 294 (380)
T ss_pred EEEEECCEEEE-------------EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccce----------e
Confidence 35667888886 999999999888887665532 222222221111111100 111 1
Q ss_pred ceEEEEECCCcEEEECCCcceEEcCCeEE-EEEeccCccccCCCCeeeechhhhceeEEEEECCCCEEEEEeCCC
Q 011402 361 PNVTFHFENSVSLKVYPHEYLFPFEDLWC-IGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (486)
Q Consensus 361 p~i~f~f~gg~~~~l~~~~yi~~~~~~~C-~~i~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rIg~a~~~~ 434 (486)
-.+.+++ |.. |+ -| +.+.... +....||-..||.+--.-|+++++.-|+...-
T Consensus 295 h~~~lki-~~~--------~l------~c~ftV~d~~------~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 295 HQAQLKI-EDL--------YL------PCSFTVLDRR------DMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred EEEEEEe-ccE--------ee------ccceEEecCC------CcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 1233333 221 22 35 4555543 34578999999999999999999999987543
No 55
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=44.15 E-value=30 Score=30.34 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=20.9
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCC
Q 011402 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (486)
Q Consensus 79 ~i~iGtP~q~~~v~vDTGSs~~Wv~~~ 105 (486)
++.++..+.+++++|||||..-.+...
T Consensus 36 ~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 36 IVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEeecCcEEEEEEeCCCccceeehh
Confidence 444555579999999999998887653
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=19 Score=29.82 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.3
Q ss_pred eEEeccCc-eeecChhHHHHHH
Q 011402 308 TIIDSGTT-LAYLPEMVYEPLV 328 (486)
Q Consensus 308 ~iiDSGtt-~~~lp~~~~~~l~ 328 (486)
.++|||-+ ++.+|.++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999887764
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=39.73 E-value=48 Score=27.72 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=24.9
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCC
Q 011402 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECP 111 (486)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~~~c~~C~ 111 (486)
....|++++|+ +++++.++|||.-.+-+...-+..|.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 45789999999 69999999999998888654334454
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.31 E-value=38 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=20.1
Q ss_pred EEEEeCCCC----ceEEEEEEcCCCeee-Ee
Q 011402 78 AKIGIGTPP----KDYYVQVDTGSDIMW-VN 103 (486)
Q Consensus 78 ~~i~iGtP~----q~~~v~vDTGSs~~W-v~ 103 (486)
+++.|..|. -++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 678888873 268999999998664 44
No 59
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=36.72 E-value=47 Score=19.77 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHhhcc
Q 011402 464 LNTQWCIILLLLSLLLHLLIHQ 485 (486)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~ 485 (486)
+....+++++++..+.|.++|+
T Consensus 5 vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc
Confidence 4455667777777788888875
No 60
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=36.20 E-value=34 Score=27.30 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=15.4
Q ss_pred CceEEeccCceeecChhH
Q 011402 306 KGTIIDSGTTLAYLPEMV 323 (486)
Q Consensus 306 ~~~iiDSGtt~~~lp~~~ 323 (486)
..++||||++.++++..-
T Consensus 12 ~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 12 FNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEEeCCCCCEEEeCCC
Confidence 349999999999999864
No 61
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=33.76 E-value=34 Score=26.90 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.0
Q ss_pred ceEEEEEEcCCCeeeEeC
Q 011402 87 KDYYVQVDTGSDIMWVNC 104 (486)
Q Consensus 87 q~~~v~vDTGSs~~Wv~~ 104 (486)
+.+++++|||++..-+|-
T Consensus 9 ~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 9 QSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eeEEEEEecCCEEEeccH
Confidence 899999999999887764
No 62
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.45 E-value=74 Score=20.24 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhcccc
Q 011402 9 LCIVLIATAAVGGVS 23 (486)
Q Consensus 9 ~~ll~l~~a~~~~~~ 23 (486)
+.+++++++++..++
T Consensus 8 ~~l~lLal~~a~~~~ 22 (36)
T PF08194_consen 8 FALLLLALAAAVPAT 22 (36)
T ss_pred HHHHHHHHHhcccCC
Confidence 344444444433333
No 63
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=28.98 E-value=54 Score=25.04 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHhhcc
Q 011402 466 TQWCIILLLLSLLLHLLIHQ 485 (486)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~ 485 (486)
.-|.++++||+|+|++++-|
T Consensus 26 ~lMtILivLVIIiLlImlfq 45 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444443
No 64
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=27.64 E-value=82 Score=18.27 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 011402 4 CLRNCLCIVLIATAAVGGV 22 (486)
Q Consensus 4 ~~~~~~~ll~l~~a~~~~~ 22 (486)
+|+.++.+++.++..+.|+
T Consensus 6 mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4566655555544444453
No 65
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=27.20 E-value=90 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=11.1
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhc
Q 011402 459 TSDCSLNTQWCIILLLLSLLLHLLIH 484 (486)
Q Consensus 459 s~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
+.+|-+....+++.++++++.+++++
T Consensus 45 ~~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333344444444555543
No 66
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=27.16 E-value=30 Score=18.19 Aligned_cols=12 Identities=8% Similarity=0.348 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHH
Q 011402 5 LRNCLCIVLIAT 16 (486)
Q Consensus 5 ~~~~~~ll~l~~ 16 (486)
|++.++++.+++
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 555555444433
No 67
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=26.77 E-value=83 Score=30.04 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.6
Q ss_pred ccEEEE---EEeCC---CCceEEEEEEcCCCeeeEeCC
Q 011402 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (486)
Q Consensus 74 ~~Y~~~---i~iGt---P~q~~~v~vDTGSs~~Wv~~~ 105 (486)
..|.++ |+||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 567665 68874 223467999999999999864
No 68
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=26.18 E-value=1e+02 Score=22.08 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=17.3
Q ss_pred ceEEeccCceeecChhHHHHH
Q 011402 307 GTIIDSGTTLAYLPEMVYEPL 327 (486)
Q Consensus 307 ~~iiDSGtt~~~lp~~~~~~l 327 (486)
.+++|+|++...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 389999999999998876543
No 69
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.34 E-value=1.1e+02 Score=18.18 Aligned_cols=21 Identities=33% Similarity=0.418 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcc
Q 011402 465 NTQWCIILLLLSLLLHLLIHQ 485 (486)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~ 485 (486)
....+++++++..+.+.++|+
T Consensus 6 i~G~ilv~lLlgYLvyALi~a 26 (29)
T PRK14748 6 ITGVLLVFLLLGYLVYALINA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 345566777777777877775
No 70
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=22.87 E-value=1e+02 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCeeeechhhhceeEEEEECCC
Q 011402 403 KNMTLLGDLVLSNKLVLYDLEN 424 (486)
Q Consensus 403 ~~~~iLG~~fl~~~y~vfD~~~ 424 (486)
.-..+||-..||++--.-|+++
T Consensus 82 ~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 82 EKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred CcceEeeHHHHhhcceeeeccC
Confidence 3558999999999999988864
No 71
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=21.33 E-value=85 Score=30.01 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=15.0
Q ss_pred ceEEeccCceeecChhH
Q 011402 307 GTIIDSGTTLAYLPEMV 323 (486)
Q Consensus 307 ~~iiDSGtt~~~lp~~~ 323 (486)
.+++|||++.+++|..-
T Consensus 15 ~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 15 NLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEeCCCCceeEeeCC
Confidence 39999999999999764
No 72
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=20.94 E-value=1.3e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=24.4
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeC
Q 011402 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (486)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~v~vDTGSs~~Wv~~ 104 (486)
..-.+.+.|.+ +...+++|+|++.-.|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45677888885 999999999999988864
Done!