RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011404
(486 letters)
>d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia
coli [TaxId: 562]}
Length = 431
Score = 343 bits (882), Expect = e-115
Identities = 200/430 (46%), Positives = 266/430 (61%), Gaps = 8/430 (1%)
Query: 52 YRLSELTHAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKV 110
+ T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + +
Sbjct: 4 IDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTAL 63
Query: 111 VENVSELPDP--ELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGS 168
+ E+ L +K+A VA NI FH AQK VE GVRC++V R + S
Sbjct: 64 KVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVAS 123
Query: 169 VGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHIL 228
VGLY+PGG+A L ST LML+ PA IAGCK VVL +PP I Y A+ GV +
Sbjct: 124 VGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEIL----YAAQLCGVQDVF 179
Query: 229 KAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVI 288
GGAQAI+A+A+GTES PKV+KIFGPGN +VT AK + +IDMPAGPSEVLVI
Sbjct: 180 NVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVI 239
Query: 289 ADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKA 348
AD A+P +A+DLLSQAEHGPDSQV+L+ + + + +Q LPR E A +A
Sbjct: 240 ADSGATPDFVASDLLSQAEHGPDSQVILLTP-AADMARRVAEAVERQLAELPRAETARQA 298
Query: 349 LGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDY 408
L S ++ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDY
Sbjct: 299 LNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDY 358
Query: 409 ASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKR 468
ASGTNHVLPTYGY + L F K MTVQ L++EG L + T+A E L AHK
Sbjct: 359 ASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKN 418
Query: 469 AVTFRLQDIE 478
AVT R+ ++
Sbjct: 419 AVTLRVNALK 428
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 29.7 bits (65), Expect = 0.72
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 312 SQVVLVIVGDGVDLDAIEQEISKQCQSLPRGE 343
++VL G VD + + Q K +P+ E
Sbjct: 183 DRMVLAGAGA-VDHEKLVQYAQKYFGHVPKSE 213
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 28.5 bits (63), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 118 PDPELDAAVKEAFDVAYNNI--YAF 140
P+P AAVK AF ++N +AF
Sbjct: 5 PNPTRAAAVKAAFQTSWNAYHHFAF 29
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 27.2 bits (59), Expect = 4.4
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 17/167 (10%)
Query: 171 LYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKA 230
++VP G L + + + + + K + + S + + V +
Sbjct: 179 VFVPVGGGGL-AAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEG 237
Query: 231 GGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIAD 290
+ I + + I + + AA L + A PS L +A
Sbjct: 238 VAVKRIGDETFRLCQEYLDD-IITVDSDAICAAMKDLFEDVRAV-----AEPSGALALA- 290
Query: 291 IYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQ 337
+ ++ ++ G V+ + +S++C+
Sbjct: 291 --------GMKKYIALHNIRGERLAHILSGANVNFHG-LRYVSERCE 328
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 26.8 bits (58), Expect = 5.6
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 293 ASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISK 334
+ AA + E + ++ ++I G VD++ +S+
Sbjct: 278 TGCLSFAA-ARAMKEKLKNKRIGIIISGGNVDIERYAHFLSQ 318
>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga
maritima [TaxId: 2336]}
Length = 151
Score = 26.0 bits (57), Expect = 6.1
Identities = 10/74 (13%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 259 YVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVI 318
+ + E ID+ + PS+ +++A +P+ ++ +L+ +
Sbjct: 91 VIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKH------------ 138
Query: 319 VGDGVDLDAIEQEI 332
++L+ E+++
Sbjct: 139 ---SIELEVNERDL 149
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 26.6 bits (58), Expect = 6.8
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 13 HIFIKPLQNRRFGFTRVQKYNQFFSSGLIHKRIQCSMKSYRLSELTHAEV-----QSLKA 67
+ +NRR T V K N +SS L K + + Y ELTH V Q +
Sbjct: 177 RTAFEIAKNRRKKVTSVDKANVLYSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILK 236
Query: 68 RPRIDFSSIFSMVHPIVDDV 87
+ D +M I+ D
Sbjct: 237 PSQFDVILTTNMFGDILSDE 256
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 156
Score = 26.0 bits (57), Expect = 7.6
Identities = 13/89 (14%), Positives = 27/89 (30%)
Query: 277 DMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQC 336
D P+G ++ + + A ++ V D + D + I
Sbjct: 38 DYPSGKEGDVLTVEFRVMGIPCLGLNGGPAFRHSEAFSFQVATDDQAETDRLWNAIVDNG 97
Query: 337 QSLPRGEFASKALGHSFMVFARDMLEGIS 365
+ G S+ + R + E I+
Sbjct: 98 GEESACGWCRDKWGISWQITPRVLSEAIA 126
>d2ffea1 c.143.1.1 (A:1-309) LPPG:FO 2-phospho-L-lactate transferase
CofD {Methanosarcina mazei [TaxId: 2209]}
Length = 309
Score = 26.5 bits (58), Expect = 7.7
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 252 IFGPGNQYVTAAKMIL--------QNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLL 303
+ GP N + +I + + + + + + I +
Sbjct: 188 LIGPSNPITSIGPIISLPGMRELLKKKKVVAVSPIIGNAPVSGPAGKLMPA-CGIEVSSM 246
Query: 304 SQAEHGPD-SQVVLVIVGDGVDLDAIEQE 331
AE+ D V + D D A E+
Sbjct: 247 GVAEYYQDFLDVFVFDERDRADEFAFERL 275
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein
cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Length = 220
Score = 26.4 bits (58), Expect = 7.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 93 ASVKDYTERFDK-VKLEKVVENVSELPDPELDAAVKEAFDVAYNNI 137
A V ++ FDK + K + +SE + E D + + +
Sbjct: 11 AQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHK 56
>d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease,
catalytic domain {Bacillus pasteurii [TaxId: 1474]}
Length = 390
Score = 26.2 bits (58), Expect = 9.7
Identities = 28/121 (23%), Positives = 40/121 (33%), Gaps = 26/121 (21%)
Query: 211 ICKEVLYCAKKAGVTHILKAG--------------GAQAISAMAWGTESCPKVEKIFGPG 256
I + + A G+T + G G I M TE P I G G
Sbjct: 10 INPDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKG 69
Query: 257 N--------QYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEH 308
+ + + A L+ E + PA L +AD V I +D L+ E
Sbjct: 70 HGSSIAPIMEQIDAGAAGLKIHEDWGA--TPASIDRSLTVADEADVQVAIHSDTLN--EA 125
Query: 309 G 309
G
Sbjct: 126 G 126
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,735,544
Number of extensions: 79731
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 14
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)