Query 011405
Match_columns 486
No_of_seqs 220 out of 501
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wys_A Riken cDNA 2310008M20 p 28.0 69 0.0024 26.0 4.4 15 266-280 13-27 (75)
2 1wj0_A Squamosa promoter-bindi 11.8 84 0.0029 24.6 1.4 10 293-302 4-13 (60)
3 1ul5_A SPL7, squamosa promoter 9.4 74 0.0025 26.7 0.3 12 291-302 2-13 (88)
4 1x4v_A Hypothetical protein LO 7.3 1.8E+02 0.0061 22.8 1.7 11 418-428 13-23 (63)
5 2eqf_A Tumor necrosis factor, 5.7 3.8E+02 0.013 19.9 2.5 11 269-279 11-21 (46)
6 2p28_B Integrin beta-2; hybrid 3.9 3.6E+02 0.012 25.2 1.7 44 115-160 16-61 (217)
7 2ej8_A DCC-interacting protein 3.9 2.9E+02 0.01 24.3 1.0 32 103-135 2-34 (160)
8 1ul4_A SPL4, squamosa promoter 3.6 2.8E+02 0.0096 23.5 0.6 10 293-302 9-18 (94)
9 1wfe_A Riken cDNA 2310008M20 p 3.5 3.6E+02 0.012 22.2 1.2 11 394-404 27-37 (86)
10 2lau_A THAP domain-containing 3.1 5.9E+02 0.02 19.5 2.1 12 392-403 4-15 (81)
No 1
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=28.05 E-value=69 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=10.4
Q ss_pred CCCCccCCCCCCCcc
Q 011405 266 SSKTCQVEGCGKGAR 280 (486)
Q Consensus 266 ~~k~C~~pGC~K~ar 280 (486)
..++|.+++|.+...
T Consensus 13 ~g~~Cs~~~C~~~df 27 (75)
T 1wys_A 13 IGQHCQVQHCRQRDF 27 (75)
T ss_dssp CCCCCSCTTTCCCSC
T ss_pred cCCCcCcccCCCccc
Confidence 356788888877754
No 2
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=11.78 E-value=84 Score=24.61 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.0
Q ss_pred cccCCCCCcc
Q 011405 293 RRCQKLGCHK 302 (486)
Q Consensus 293 rrC~~pGC~K 302 (486)
.+|+++||..
T Consensus 4 ~~CqV~gC~~ 13 (60)
T 1wj0_A 4 ICCQVDNCGA 13 (60)
T ss_dssp EECSSTTCCC
T ss_pred ceeecCCCCc
Confidence 4455555544
No 3
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=9.42 E-value=74 Score=26.72 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=5.7
Q ss_pred CccccCCCCCcc
Q 011405 291 GGRRCQKLGCHK 302 (486)
Q Consensus 291 GgrrC~~pGC~K 302 (486)
|..+|+++||..
T Consensus 2 ~~~~CqV~GC~~ 13 (88)
T 1ul5_A 2 SVARCQVPDCEA 13 (88)
T ss_dssp -CCSCEETTEEC
T ss_pred CCCeeecCCCCC
Confidence 344555555554
No 4
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.32 E-value=1.8e+02 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.999 Sum_probs=6.7
Q ss_pred ccCCCCCCCCC
Q 011405 418 KRCTAPGCTKG 428 (486)
Q Consensus 418 kRC~~~GCtK~ 428 (486)
++|.+++|.+.
T Consensus 13 ~~Cs~~~Ck~~ 23 (63)
T 1x4v_A 13 NKCERAGCRQR 23 (63)
T ss_dssp CCCCSTTCCCC
T ss_pred CCCCccCCCCC
Confidence 45666666655
No 5
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=5.70 E-value=3.8e+02 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.619 Sum_probs=6.7
Q ss_pred CccCCCCCCCc
Q 011405 269 TCQVEGCGKGA 279 (486)
Q Consensus 269 ~C~~pGC~K~a 279 (486)
+|+.|||..+.
T Consensus 11 rC~apgCdhyg 21 (46)
T 2eqf_A 11 RCRAPACDHFG 21 (46)
T ss_dssp SCSSTTCCSCC
T ss_pred cccCccccccc
Confidence 46666666554
No 6
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Probab=3.90 E-value=3.6e+02 Score=25.20 Aligned_cols=44 Identities=2% Similarity=0.199 Sum_probs=24.8
Q ss_pred ccccceeeeecCCCCCCCC--CccccccccccCCCceeEEEeeccCCC
Q 011405 115 DLDLDFTLHLGNDKMPNPK--KSAYSNMKGVELQPKVDLVLSLSTGSP 160 (486)
Q Consensus 115 d~~l~f~~~~~~~~~~~~~--k~~~~~~~~~~~~~~~~l~lsls~~~~ 160 (486)
+|.|.|+ .....++..+. +..+++++ ....-.++++|.|...|.
T Consensus 16 ~v~v~~~-s~C~~g~~~~~~~~~~C~~v~-~g~~v~F~v~v~~~~Cp~ 61 (217)
T 2p28_B 16 TLKVTYD-SFCSNGVTHRNQPRGDCDGVQ-INVPITFQVKVTATECIQ 61 (217)
T ss_dssp TEEEEEE-EECTTSCEEEEESSEEECCBC-TTCCEEEEEEEEESSCCC
T ss_pred CEEEEEE-eECCCCCcccCcccccccCcc-CCCEEEEEEEEEeCCCCC
Confidence 5777775 44444443333 55678886 333334677777765543
No 7
>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}
Probab=3.85 E-value=2.9e+02 Score=24.28 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=17.9
Q ss_pred CcccccCcccccccccceee-eecCCCCCCCCCc
Q 011405 103 SSAKENEEESSMDLDLDFTL-HLGNDKMPNPKKS 135 (486)
Q Consensus 103 ss~k~~~~~ss~d~~l~f~~-~~~~~~~~~~~k~ 135 (486)
||-.+.|+|.++ |...|.+ .||.-.+..++-.
T Consensus 2 ~~~~~~~~~~~~-~~~~f~vkYLGs~eV~~~~g~ 34 (160)
T 2ej8_A 2 SSGSSGETEDSI-LHQLFIVRFLGSMEVKSDDHP 34 (160)
T ss_dssp ------CCTTCS-CEEEEEEEEEEEEEECCCSCT
T ss_pred CCCCCCCCcccc-cccEEEEEeeeEEEeCCCCCH
Confidence 455667777777 4566665 4898888777544
No 8
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=3.63 E-value=2.8e+02 Score=23.51 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=4.8
Q ss_pred cccCCCCCcc
Q 011405 293 RRCQKLGCHK 302 (486)
Q Consensus 293 rrC~~pGC~K 302 (486)
.+|+++||..
T Consensus 9 ~~CqV~GC~~ 18 (94)
T 1ul4_A 9 RLCQVDRCTA 18 (94)
T ss_dssp CCCSSTTCCC
T ss_pred CceecCCCCc
Confidence 3455555543
No 9
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=3.54 E-value=3.6e+02 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=5.8
Q ss_pred cccCCCCCccc
Q 011405 394 RCQASGCTKGA 404 (486)
Q Consensus 394 RC~~pGCtK~A 404 (486)
+|.+++|.+..
T Consensus 27 ~C~~~~Ck~~~ 37 (86)
T 1wfe_A 27 SCSFKGCTDVE 37 (86)
T ss_dssp ECCSTTCCCEE
T ss_pred CCCCcCCCCCC
Confidence 55555555543
No 10
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=3.15 E-value=5.9e+02 Score=19.52 Aligned_cols=12 Identities=33% Similarity=0.839 Sum_probs=6.3
Q ss_pred cccccCCCCCcc
Q 011405 392 GRRCQASGCTKG 403 (486)
Q Consensus 392 GrRC~~pGCtK~ 403 (486)
|..|.++||.+.
T Consensus 4 G~~C~v~gC~n~ 15 (81)
T 2lau_A 4 GFTCCVPGCYNN 15 (81)
T ss_dssp CCSCCCSSSSSC
T ss_pred CCEEEeCCCcCC
Confidence 445555555543
Done!