Query 011406
Match_columns 486
No_of_seqs 172 out of 1118
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4176 Uncharacterized conser 100.0 3.9E-34 8.5E-39 290.7 16.5 216 54-278 93-309 (323)
2 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 7.2E-32 1.6E-36 251.6 12.8 178 78-271 1-194 (194)
3 PRK15401 alpha-ketoglutarate-d 100.0 4E-30 8.7E-35 248.7 19.1 184 73-273 14-213 (213)
4 KOG3200 Uncharacterized conser 99.9 1.6E-26 3.4E-31 216.0 12.9 180 68-274 3-215 (224)
5 TIGR00568 alkb DNA alkylation 99.9 1.5E-25 3.3E-30 210.2 16.1 161 82-258 1-169 (169)
6 COG3145 AlkB Alkylated DNA rep 99.9 7.2E-23 1.6E-27 195.6 13.8 174 73-268 11-194 (194)
7 KOG3959 2-Oxoglutarate- and ir 99.8 4.4E-20 9.5E-25 179.5 3.4 174 75-277 70-281 (306)
8 KOG2731 DNA alkylation damage 97.9 1.1E-05 2.3E-10 83.8 3.9 121 128-259 166-292 (378)
9 smart00702 P4Hc Prolyl 4-hydro 97.8 0.001 2.2E-08 61.9 15.0 160 77-270 1-175 (178)
10 PRK05467 Fe(II)-dependent oxyg 97.7 0.00043 9.3E-09 68.5 12.5 150 79-270 2-174 (226)
11 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.5 7E-05 1.5E-09 62.9 3.1 88 179-271 1-95 (98)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 95.6 0.0063 1.4E-07 51.1 1.6 81 182-270 1-97 (100)
13 PF12933 FTO_NTD: FTO catalyti 95.0 0.078 1.7E-06 53.3 7.6 92 177-272 136-250 (253)
14 PLN00052 prolyl 4-hydroxylase; 93.9 1.3 2.8E-05 46.2 13.7 169 73-270 50-248 (310)
15 TIGR01762 chlorin-enz chlorina 93.6 1.1 2.3E-05 45.9 12.5 42 233-278 208-252 (288)
16 COG3128 PiuC Uncharacterized i 92.8 0.92 2E-05 44.5 9.9 81 182-270 84-177 (229)
17 PF09859 Oxygenase-NA: Oxygena 86.4 2.3 5.1E-05 40.7 6.9 104 157-269 42-167 (173)
18 PF13759 2OG-FeII_Oxy_5: Putat 81.5 3 6.5E-05 35.6 5.0 84 182-270 2-100 (101)
19 PF12851 Tet_JBP: Oxygenase do 74.9 3.6 7.8E-05 39.1 3.9 35 233-270 127-167 (171)
20 KOG1591 Prolyl 4-hydroxylase a 73.7 38 0.00082 35.1 11.2 161 73-267 93-277 (289)
21 TIGR02466 conserved hypothetic 71.8 29 0.00064 34.0 9.5 89 178-270 94-196 (201)
22 KOG1924 RhoA GTPase effector D 56.7 34 0.00074 40.1 7.5 11 281-291 509-519 (1102)
23 COG3826 Uncharacterized protei 48.0 63 0.0014 31.9 6.9 110 156-270 103-232 (236)
24 COG5285 Protein involved in bi 36.4 42 0.0009 35.1 3.9 53 233-290 192-246 (299)
25 KOG3671 Actin regulatory prote 34.2 5.8E+02 0.012 29.0 12.2 184 285-485 350-564 (569)
26 PLN02904 oxidoreductase 34.0 1.1E+02 0.0025 32.2 6.9 79 181-272 209-303 (357)
27 KOG2731 DNA alkylation damage 31.7 21 0.00046 38.1 1.0 45 178-222 313-363 (378)
28 PF05721 PhyH: Phytanoyl-CoA d 29.1 66 0.0014 29.1 3.7 25 77-101 4-28 (211)
29 KOG1830 Wiskott Aldrich syndro 27.4 9E+02 0.02 27.0 12.1 10 75-84 144-153 (518)
30 PLN02947 oxidoreductase 24.1 2.2E+02 0.0048 30.3 7.0 79 181-273 226-321 (374)
31 PLN02984 oxidoreductase, 2OG-F 24.0 2.4E+02 0.0052 29.7 7.1 78 180-271 200-295 (341)
32 PLN03001 oxidoreductase, 2OG-F 23.1 1.8E+02 0.0039 29.5 5.8 77 182-272 118-211 (262)
33 COG2850 Uncharacterized conser 22.2 3.7E+02 0.008 29.2 8.0 111 153-273 94-215 (383)
34 PLN02912 oxidoreductase, 2OG-F 20.8 2.3E+02 0.0049 29.9 6.2 80 180-273 197-293 (348)
No 1
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=290.66 Aligned_cols=216 Identities=38% Similarity=0.643 Sum_probs=201.1
Q ss_pred cccccccceeeccccCCcccccCCceEEeCCCCCHHHHHHHHHHHHhHHhcCCceeecCceEEecccccccCCceeeecC
Q 011406 54 NQSMAAKSFVGTEMVDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLG 133 (486)
Q Consensus 54 ~~~~~~k~f~~~E~idg~~VnvvpGL~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G 133 (486)
.-.-+.++|...|...+..++.++|+.++...+++.|...|.+.+.++..++++.++.+.++.. +++|++|+++|||
T Consensus 93 ~~~~~i~~f~~~e~~~~~~~n~~~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~---~~~gk~R~~iq~G 169 (323)
T KOG4176|consen 93 ANLKAIKGFGEQEQLKGQSVNVVEGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTY---QESGKHREVIQLG 169 (323)
T ss_pred ccccccccccceeeccchhhhhhhhheeeccccChhhceehhhhhhhhHHhhhhccccccccee---eccccceeeeecC
Confidence 3446899999999999999999999999999999999999999999999889999999888877 7889999999999
Q ss_pred CcccCCCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-C
Q 011406 134 LPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-T 212 (486)
Q Consensus 134 ~~Y~y~~~ed~n~~g~~~~~~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL-S 212 (486)
+++.|.+..+++. ...+|||..++.+++||+.+.+++.+||+|+||+|.+|++|.+|+|+++|++||++||| |
T Consensus 170 ~~f~y~~~~~d~~------~~~~piPs~~~~ii~rlv~~~~ip~~pd~~~iN~Ye~G~~i~ph~~~~~F~~Pi~slS~lS 243 (323)
T KOG4176|consen 170 YPFDYRTNNVDES------KPVDPIPSLFKSIIDRLVSWRVIPERPDQCTINFYEPGDGIPPHIDHSAFLDPISSLSFLS 243 (323)
T ss_pred ceeccCCCccccc------CccCCCchHHHHHHHHhhhhccCCCCCCeeEEEeeCCCCCCCCCCChHHhcCceEEEEeec
Confidence 9999987655443 22789999999999999999999999999999999999999999999999999999988 9
Q ss_pred ceeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccccccccCCCCCCeEEEEcccccCCCC
Q 011406 213 ECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKSQPKKL 278 (486)
Q Consensus 213 ~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~RISLTFRkV~p~~~ 278 (486)
+|+|.|++....+..+.+++...+.|..|++|||.|.+.+...|+++..+.+||+||||++++...
T Consensus 244 e~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~~~~kRisitfrki~~~~~ 309 (323)
T KOG4176|consen 244 ECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRPSRNKRISITFRKIRPDPC 309 (323)
T ss_pred ceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCCCCCceEEEEEEEeccCCC
Confidence 999999999988888888889999999999999999999999999999999999999999998874
No 2
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.97 E-value=7.2e-32 Score=251.59 Aligned_cols=178 Identities=22% Similarity=0.384 Sum_probs=122.4
Q ss_pred ceEEeCCCCCHHHHHHHHHHHHh-HHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCCCCC
Q 011406 78 GLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIE 156 (486)
Q Consensus 78 GL~l~pdFLS~eEe~~Lls~L~e-l~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~~~~ 156 (486)
||+|++|||+++|+++|++.|.+ ..|...... .++.+...+.+++ +......+..|.|.... ......+.
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~y~y~~~~------~~~~~~~~ 71 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESAPFRQPTYP-MGKVYSLPRKLCG--GLSWVGDGPSYRYSGKR------PVRSKPWP 71 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC-CCCECCECCE-SS--EEEEEECT--CCCTCC-------EECCCEBS
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc-CCCEEccceecce--eeEEECCCCCeEcCCcc------ccCCCCCC
Confidence 89999999999999999999985 444333332 3566555443321 11223345667775220 11345788
Q ss_pred CCcHHHHHHHHHHHhCcc--CCCCCCEEEEeccCCCCCCCCCCCCCCC--CCCEEEEEc-CceeeEeeeccCCCCCCCCc
Q 011406 157 PIPSLLQDVIDRLVGLQI--MTVKPDSCIVDVFNEGDHSQPHISPSWF--GRPVCILFL-TECDMTFGRMIGIDHPGDYR 231 (486)
Q Consensus 157 PiP~~L~~LidRLv~~~v--l~~~PNqcLIN~Y~pGdgI~pHvD~p~f--g~PIvsLSL-S~cvM~Fgr~~~~~~~g~~r 231 (486)
+||++|..+++++.+... ....||+||||+|.+|++|++|+|..++ +.+|++||| ++|+|.|+.... ..
T Consensus 72 ~~p~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~~~~~~I~slSLG~~~~~~f~~~~~------~~ 145 (194)
T PF13532_consen 72 PFPEWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEYGFGPPIASLSLGSSRVFRFRNKSD------DD 145 (194)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC-CCSEEEEEEEES-EEEEEEECGG------TS
T ss_pred CccHHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccccCCCcEEEEEEccCceEEEeeccC------CC
Confidence 999999999999876433 2489999999999999999999987754 889999999 999999987532 23
Q ss_pred ccEEEEecCCcEEEeccccccccccccCCCCC----------CeEEEEcc
Q 011406 232 GTLRLSVAPGSLLVMQGKSADIAKHAISSIRK----------QRILVTFT 271 (486)
Q Consensus 232 ~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~----------~RISLTFR 271 (486)
+.++|.|++||||||+|++|+.| |+|++... .|||||||
T Consensus 146 ~~~~~~L~~gsl~vm~g~~r~~~-H~I~~~~~~~~~~~~~~~~RislTfR 194 (194)
T PF13532_consen 146 EPIEVPLPPGSLLVMSGEARYDW-HGIPPVKKDTHPSHYVRGRRISLTFR 194 (194)
T ss_dssp -EEEEEE-TTEEEEEETTHHHHE-EEE-S-SCEEEESTEE-S-EEEEEEE
T ss_pred ccEEEEcCCCCEEEeChHHhhhe-eEcccccCCccccccCCCCEEEEEeC
Confidence 68999999999999999999999 99999554 89999999
No 3
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=99.97 E-value=4e-30 Score=248.73 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=139.2
Q ss_pred cccCCceEEeCCCCCHHHHHHHHHHHHhHHhc--CCceeecCceEEecccccccCC--ceeeecCCcccCCCCCcccCCC
Q 011406 73 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTA--GKRGQIQGPAYVVSKRPIRGHG--REVIQLGLPIVDGPPEDEIAGG 148 (486)
Q Consensus 73 VnvvpGL~l~pdFLS~eEe~~Lls~L~el~~s--~Rr~qlyG~t~~~~rr~~kg~g--R~~~q~G~~Y~y~~~ed~n~~g 148 (486)
..+.+|..++++|. .+|+++|++.|.++... -++..++|......+.+ .+| .|+.+- ..|.|+...
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt--~~G~~~W~~d~-~~YrYs~~~------ 83 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMT--NCGALGWVTDR-RGYRYSPID------ 83 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEe--ccccceEecCC-CCcccCCcC------
Confidence 34678999999995 99999999999874321 25577776544434433 344 355443 367775311
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCCC--CCCCCCEEEEEc-CceeeEeeeccCC
Q 011406 149 TSRDRRIEPIPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISP--SWFGRPVCILFL-TECDMTFGRMIGI 224 (486)
Q Consensus 149 ~~~~~~~~PiP~~L~~LidRLv~~-~vl~~~PNqcLIN~Y~pGdgI~pHvD~--p~fg~PIvsLSL-S~cvM~Fgr~~~~ 224 (486)
......+.+||++|.+|.+++... +.....||+||||+|++|++|+||+|. ..|+.+|++||| ++|+|.|++...
T Consensus 84 ~~~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~- 162 (213)
T PRK15401 84 PLTGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKR- 162 (213)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccCCCCEEEEeCCCCeEEEecccCC-
Confidence 013567888999999999998544 333579999999999999999999973 457889999999 999999987532
Q ss_pred CCCCCCcccEEEEecCCcEEEeccccccccccccCCCC--------CCeEEEEcccc
Q 011406 225 DHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR--------KQRILVTFTKS 273 (486)
Q Consensus 225 ~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r--------~~RISLTFRkV 273 (486)
+ ..+.+|.|++||||||+|++|+ |.|+|++++ ..|||||||++
T Consensus 163 ---~--~~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~ 213 (213)
T PRK15401 163 ---S--DPLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA 213 (213)
T ss_pred ---C--CceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence 1 2468999999999999999997 669999954 37999999985
No 4
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.6e-26 Score=215.95 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=141.4
Q ss_pred cCCcccccCCceEEeCCCCCHHHHHHHHHHHHhHHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCC
Q 011406 68 VDGKMVNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAG 147 (486)
Q Consensus 68 idg~~VnvvpGL~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~ 147 (486)
|.+-.|..-|-+.||++||+.+||..+++.|+..+. .+|...+.|+++++|.-...
T Consensus 3 ~~~F~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~---------------pkW~~L~NRRLqNyGGvvh~--------- 58 (224)
T KOG3200|consen 3 IKKFIVKSAPTMIYIPNFITEEEENLYLSHIENAPQ---------------PKWRVLANRRLQNYGGVVHK--------- 58 (224)
T ss_pred cceeEecccceEEEcCCccChHHHHHHHHHHhcCCC---------------chhHHHHhhhhhhcCCcccc---------
Confidence 344446666788999999999999999999986441 11222233444455432211
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeEeeeccCCCC
Q 011406 148 GTSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDH 226 (486)
Q Consensus 148 g~~~~~~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~ 226 (486)
....++.+|+||+.+.+++-..++|....|++|||+|.+|+||+||.|.+.|.+.|.+||| |.|+|+|......+.
T Consensus 59 ---~glipeelP~wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~ 135 (224)
T KOG3200|consen 59 ---TGLIPEELPPWLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEV 135 (224)
T ss_pred ---CCcCccccCHHHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEeccccccccc
Confidence 2456689999999999999888999899999999999999999999999999977778999 999999987432111
Q ss_pred C-----C--CCcccEEEEecCCcEEEeccccccccccccCC-------------------------CCCCeEEEEccccc
Q 011406 227 P-----G--DYRGTLRLSVAPGSLLVMQGKSADIAKHAISS-------------------------IRKQRILVTFTKSQ 274 (486)
Q Consensus 227 ~-----g--~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk-------------------------~r~~RISLTFRkV~ 274 (486)
. + -.|..+.|.|+++||||+.|+++.++.|+|.. +++.|||||+|.|-
T Consensus 136 ~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sna~ac~s~k~Gd~lvr~tRvSLTiR~VP 215 (224)
T KOG3200|consen 136 NDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSNALACSSRKDGDKLVRQTRVSLTIRLVP 215 (224)
T ss_pred CCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhhhhhccccCCcceeeecceeEEEEecch
Confidence 1 1 12456899999999999999999999999987 57899999999984
No 5
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.93 E-value=1.5e-25 Score=210.17 Aligned_cols=161 Identities=18% Similarity=0.250 Sum_probs=127.1
Q ss_pred eCCCCCHHHHHHHHHHHHhH----HhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCCCCCC
Q 011406 82 YEEVSGNSEVSKLVSLVNDL----RTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEP 157 (486)
Q Consensus 82 ~pdFLS~eEe~~Lls~L~el----~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~~~~P 157 (486)
+.+|+..+++..|++.+.++ .|.+ .+.+||+++.++|..+ ++-||+.+ |+.|+|+...+. ....+++
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~~~w~~-~~~~~gk~~~~pr~~~-~~l~W~~~-g~~Y~ys~~~~~------~~~~~p~ 71 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQDPFRQ-YVTPGGYTMSVAMTNL-GKLGWTTH-GQGYLYSPKDPQ------TNKPWPA 71 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhcCCCcC-eEecCCeEeeehhhhc-ccceEEcC-CCcccCCCcccC------CCCCCCC
Confidence 36889999999999988753 4655 4788999999988763 33345555 999999743211 2345667
Q ss_pred CcHHHHHHHHHHHhC-ccCCCCCCEEEEeccCCCCCCCCCCCCCCCC--CCEEEEEc-CceeeEeeeccCCCCCCCCccc
Q 011406 158 IPSLLQDVIDRLVGL-QIMTVKPDSCIVDVFNEGDHSQPHISPSWFG--RPVCILFL-TECDMTFGRMIGIDHPGDYRGT 233 (486)
Q Consensus 158 iP~~L~~LidRLv~~-~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg--~PIvsLSL-S~cvM~Fgr~~~~~~~g~~r~~ 233 (486)
||++|.+|.+++... ++....||+||||+|++|++|+||+|+++++ .+|++||| ++|+|.|+++.. ...+
T Consensus 72 ~P~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~------~~~~ 145 (169)
T TIGR00568 72 MPQDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKR------NDPP 145 (169)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccccCCCCEEEEeCCCCEEEEecCCcC------CCce
Confidence 999999999998543 3334699999999999999999999976664 69999999 999999987632 1246
Q ss_pred EEEEecCCcEEEecccccccccccc
Q 011406 234 LRLSVAPGSLLVMQGKSADIAKHAI 258 (486)
Q Consensus 234 ~~L~L~~GSLLVMsGeAR~~WkHgI 258 (486)
.+|.|++||||||+|++|+ +.|+|
T Consensus 146 ~~l~L~sGsllvM~G~sR~-~~Hgv 169 (169)
T TIGR00568 146 KRLRLHSGDVVIMGGESRL-AFHGV 169 (169)
T ss_pred EEEEeCCCCEEEECCchhc-cccCC
Confidence 8999999999999999997 78987
No 6
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.2e-23 Score=195.58 Aligned_cols=174 Identities=20% Similarity=0.125 Sum_probs=124.1
Q ss_pred cccCCceEEeCCCCCHHHHHHHHHHHH----hHHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCC
Q 011406 73 VNVVDGLKLYEEVSGNSEVSKLVSLVN----DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGG 148 (486)
Q Consensus 73 VnvvpGL~l~pdFLS~eEe~~Lls~L~----el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g 148 (486)
....+|+.++++|+ -.++.+|++.|. +.+|...+...+|+.+.+.+.. .|+.+ -..|.|+..
T Consensus 11 ~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~~P~~~~~~~~~g~~~sV~r~~-----~W~~d-~~gy~y~~~------- 76 (194)
T COG3145 11 RQLAPGAVILPGFL-LLTQGALVAALLFLLSQAPWFRPRRTPYGKPMSVPRLL-----GWVTD-RRGYRYSLR------- 76 (194)
T ss_pred ccCCCCeEEEeccc-ccchHHHHHHHHHhcccCcccceeecCCCcEeeeeecc-----ceecc-ccccccccc-------
Confidence 34578999999999 556666666554 5677778888999999998722 12333 122333211
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCC--CCEEEEEc-CceeeEeeeccCCC
Q 011406 149 TSRDRRIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFG--RPVCILFL-TECDMTFGRMIGID 225 (486)
Q Consensus 149 ~~~~~~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg--~PIvsLSL-S~cvM~Fgr~~~~~ 225 (486)
......+||.++.-..+...+.+.....+|+||||+|++|+.|+||+|...++ .+|++||| +.|+|.|++...
T Consensus 77 --~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r-- 152 (194)
T COG3145 77 --SPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR-- 152 (194)
T ss_pred --ccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC--
Confidence 12223344443332222222344555788999999999999999999876654 37999999 999999998753
Q ss_pred CCCCCcccEEEEecCCcEEEeccccccccccccCCC---CCCeEEE
Q 011406 226 HPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSI---RKQRILV 268 (486)
Q Consensus 226 ~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~---r~~RISL 268 (486)
.....++.|++||||||.|.+|+.|.|.||+. ..+||||
T Consensus 153 ----~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~~~~Rinl 194 (194)
T COG3145 153 ----RGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRINL 194 (194)
T ss_pred ----CCCceeEEecCCCEEEecCCccccccccccccccCCcccccC
Confidence 13579999999999999999999999999994 3477775
No 7
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=99.78 E-value=4.4e-20 Score=179.53 Aligned_cols=174 Identities=21% Similarity=0.357 Sum_probs=133.0
Q ss_pred cCCceEEeCCCCCHHHHHHHHHHHHhHHh----cCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCC
Q 011406 75 VVDGLKLYEEVSGNSEVSKLVSLVNDLRT----AGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTS 150 (486)
Q Consensus 75 vvpGL~l~pdFLS~eEe~~Lls~L~el~~----s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~ 150 (486)
.+|||.+++||||.+|+.+|+..|+.++| ++||.|-||.++++.++.++
T Consensus 70 p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klk--------------------------- 122 (306)
T KOG3959|consen 70 PIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLK--------------------------- 122 (306)
T ss_pred ccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhc---------------------------
Confidence 58999999999999999999999997776 57999999999999877643
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCccCC--CCCCEEEEeccCC--CCCCCCCCCCCC-CCCCEEEEE-cCceeeEeeeccC-
Q 011406 151 RDRRIEPIPSLLQDVIDRLVGLQIMT--VKPDSCIVDVFNE--GDHSQPHISPSW-FGRPVCILF-LTECDMTFGRMIG- 223 (486)
Q Consensus 151 ~~~~~~PiP~~L~~LidRLv~~~vl~--~~PNqcLIN~Y~p--GdgI~pHvD~p~-fg~PIvsLS-LS~cvM~Fgr~~~- 223 (486)
...+-.||.+-..+..|+..-.++. ..|.+|.+. |.+ |..|.||+|..| +|..++++- |++.++.+-.+.-
T Consensus 123 -t~~F~G~P~~~~~v~rrm~~yp~l~gfqp~EqCnLe-Yep~kgsaIdpH~DD~WiWGeRlv~~n~l~d~vl~lc~~e~~ 200 (306)
T KOG3959|consen 123 -TDTFVGMPEYADMVLRRMSEYPVLKGFQPFEQCNLE-YEPVKGSAIDPHQDDMWIWGERLVRSNRLFDFVLKLCSKECL 200 (306)
T ss_pred -cCcccCCchHHHHHHHHhhccchhhccCcHHHcCcc-cccccCCccCccccchhhhhhheeehhhccHHHHHhhhhhhh
Confidence 1235688999999999986655443 578999995 765 456899998776 687777653 2444433332110
Q ss_pred -----------CCCC---------CC-----CcccEEEEecCCcEEEeccccccccccccCC--CCCCeEEEEcccccCC
Q 011406 224 -----------IDHP---------GD-----YRGTLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPK 276 (486)
Q Consensus 224 -----------~~~~---------g~-----~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk--~r~~RISLTFRkV~p~ 276 (486)
+.++ ++ ..--+.|.++++|||||.|+|||.|+|+|-+ ++++||.+|||...+.
T Consensus 201 ~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~hi~~RRvcvt~RE~~~~ 280 (306)
T KOG3959|consen 201 ASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRHHIRGRRVCVTMREAAKD 280 (306)
T ss_pred ccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHHhhhhceeeeeHHhhhHh
Confidence 0000 00 0124889999999999999999999999998 8999999999998765
Q ss_pred C
Q 011406 277 K 277 (486)
Q Consensus 277 ~ 277 (486)
-
T Consensus 281 f 281 (306)
T KOG3959|consen 281 F 281 (306)
T ss_pred h
Confidence 4
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=97.86 E-value=1.1e-05 Score=83.82 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=82.8
Q ss_pred eeeecCCcccCCCCCcccCCCCCCCCCCCCCcHHHHHH-HHHHHhCccC-C-CCCCEEEEeccCCCCCCCCCCCCCCCC-
Q 011406 128 EVIQLGLPIVDGPPEDEIAGGTSRDRRIEPIPSLLQDV-IDRLVGLQIM-T-VKPDSCIVDVFNEGDHSQPHISPSWFG- 203 (486)
Q Consensus 128 ~~~q~G~~Y~y~~~ed~n~~g~~~~~~~~PiP~~L~~L-idRLv~~~vl-~-~~PNqcLIN~Y~pGdgI~pHvD~p~fg- 203 (486)
+...+|..|++...+.- +........++++|..+ .++.....-+ . .....+|+|+|..++-++-|.|..+.+
T Consensus 166 Rw~T~G~~~dw~s~~~~----~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~~~~~~Gli~nYlsi~~tl~ih~d~reld~ 241 (378)
T KOG2731|consen 166 RWVTLGNQYDWSSKDIF----IFLSKKHYNIKPSLLGLLREKVKAAKGFSHIVIRPGLIKNYLSIDDTLGIHLDCRELDL 241 (378)
T ss_pred cccccccccCCcccccc----ccccccCCCCChHHhhhhhhhhhhhcCccceeccCcceeeecccCcEEEEEeehhhccc
Confidence 45667888888655411 00122334556666544 3443222112 1 345568999999999999999877654
Q ss_pred -CCEEEEEc-CceeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccccccccC
Q 011406 204 -RPVCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAIS 259 (486)
Q Consensus 204 -~PIvsLSL-S~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIP 259 (486)
.++++.|| -+|++.++-.-.. .....+.|..|+.++|.|.+| ...|||+
T Consensus 242 ~~pf~s~s~g~~ai~lLg~m~l~------e~p~p~~lrsGdv~im~Gfsr-lv~haIp 292 (378)
T KOG2731|consen 242 SKPFYSPSLGQGAILLLGMMCLG------ENPDPMTLRSGDVVIMDGFSR-LVEHAIP 292 (378)
T ss_pred CCccccccccccceeeecccccC------CCCCccccccCceEeecchHH-HHhhccc
Confidence 58888899 7899998865432 235678899999999999999 6789999
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=97.76 E-value=0.001 Score=61.87 Aligned_cols=160 Identities=15% Similarity=0.239 Sum_probs=89.9
Q ss_pred CceEEeCCCCCHHHHHHHHHHHHhHHhcCCceeec-CceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCCCC
Q 011406 77 DGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ-GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRI 155 (486)
Q Consensus 77 pGL~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qly-G~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~~~ 155 (486)
|+++++++||+++|+++|++..+...+. ..+. +..-....... |. ..+..+. .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~---~~~~~~~~~~~~~~~~----R~--~~~~~l~-----------------~ 54 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWR---GEVTRGDTNPNHDSKY----RQ--SNGTWLE-----------------L 54 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhccc---ceeecCCCCccccCCC----Ee--ecceecC-----------------C
Confidence 6789999999999999999988765431 1111 11000000000 00 0000000 0
Q ss_pred CCCcHHHHHHHHHHHhCccC----CCCCCEEEEeccCCCCCCCCCCCCCCCC---CCEEEE--EcCc----eeeEeeecc
Q 011406 156 EPIPSLLQDVIDRLVGLQIM----TVKPDSCIVDVFNEGDHSQPHISPSWFG---RPVCIL--FLTE----CDMTFGRMI 222 (486)
Q Consensus 156 ~PiP~~L~~LidRLv~~~vl----~~~PNqcLIN~Y~pGdgI~pHvD~p~fg---~PIvsL--SLS~----cvM~Fgr~~ 222 (486)
..-.+....|.+|+...-.+ ...-+.+.|..|..|+...+|.|..... ..++++ -|++ -.+.|-...
T Consensus 55 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 55 LKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred CCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 00133445555555432112 2455778889999999999999865432 445553 3332 223332210
Q ss_pred CCCCCCCCcccEEEEecCCcEEEeccccccccccccCCCC-CCeEEEEc
Q 011406 223 GIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIR-KQRILVTF 270 (486)
Q Consensus 223 ~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r-~~RISLTF 270 (486)
.....+|.-..|++|++...-. ...|++.++. +.|++++.
T Consensus 135 -------~~~~~~v~P~~G~~v~f~~~~~-~~~H~v~pv~~G~r~~~~~ 175 (178)
T smart00702 135 -------LMVCATVKPKKGDLLFFPSGRG-RSLHGVCPVTRGSRWAITG 175 (178)
T ss_pred -------CccceEEeCCCCcEEEEeCCCC-CccccCCcceeCCEEEEEE
Confidence 0124578889999999974321 3569999965 79999886
No 10
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.72 E-value=0.00043 Score=68.55 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=84.9
Q ss_pred eEEeCCCCCHHHHHHHHHHHHhHHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCCCCCCC
Q 011406 79 LKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDRRIEPI 158 (486)
Q Consensus 79 L~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~~~~Pi 158 (486)
+..++++||++|+++|.+.++...|.--+..- |.. .+..|.+. ....-.++
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta-G~~----~~~vKnN~------------------------ql~~d~~~ 52 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA-GAQ----AAQVKNNQ------------------------QLPEDSPL 52 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc-Ccc----chhccccc------------------------ccCCCCHH
Confidence 46799999999999999999887764211110 100 00011000 00000111
Q ss_pred cHHHH-HHHHHHHhCccC-----CCCCCEEEEeccCCCCCCCCCCCCCCCC--------CCEEE--EEcCce------ee
Q 011406 159 PSLLQ-DVIDRLVGLQIM-----TVKPDSCIVDVFNEGDHSQPHISPSWFG--------RPVCI--LFLTEC------DM 216 (486)
Q Consensus 159 P~~L~-~LidRLv~~~vl-----~~~PNqcLIN~Y~pGdgI~pHvD~p~fg--------~PIvs--LSLS~c------vM 216 (486)
-..|. .|.++|.+...+ +.+.-..++|+|.+|+.-++|+|..... +..++ |.|++. .+
T Consensus 53 a~~l~~~i~~~L~~~~l~~sa~lp~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl 132 (226)
T PRK05467 53 ARELGNLILDALTRNPLFFSAALPRKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGEL 132 (226)
T ss_pred HHHHHHHHHHHHhcCchhhhhccccccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCce
Confidence 22232 233333322221 2333467899999999999999875331 11222 334321 12
Q ss_pred EeeeccCCCCCCCCcccEEEEecCCcEEEeccccccccccccCC-CCCCeEEEEc
Q 011406 217 TFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISS-IRKQRILVTF 270 (486)
Q Consensus 217 ~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk-~r~~RISLTF 270 (486)
.|.. ..+...|.++.|++||+... -.|.+.+ +++.|++++|
T Consensus 133 ~~~~---------~~g~~~Vkp~aG~~vlfps~----~lH~v~pVt~G~R~~~~~ 174 (226)
T PRK05467 133 VIED---------TYGEHRVKLPAGDLVLYPST----SLHRVTPVTRGVRVASFF 174 (226)
T ss_pred EEec---------CCCcEEEecCCCeEEEECCC----CceeeeeccCccEEEEEe
Confidence 2210 11357899999999999964 5699988 7889999998
No 11
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.51 E-value=7e-05 Score=62.93 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=46.8
Q ss_pred CCEEEEeccC---CCCCCCCCCCCCCCCCCEEEEEc--CceeeEeeeccCCCCCCCCcccEEEEecCCc-EEEecccccc
Q 011406 179 PDSCIVDVFN---EGDHSQPHISPSWFGRPVCILFL--TECDMTFGRMIGIDHPGDYRGTLRLSVAPGS-LLVMQGKSAD 252 (486)
Q Consensus 179 PNqcLIN~Y~---pGdgI~pHvD~p~fg~PIvsLSL--S~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GS-LLVMsGeAR~ 252 (486)
+++|.||+|. .+.++.+|.|.. ..+++|.+ ...-+.|.....+. .-. .....+.+.-|| |.+|++..+.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~---~~~~Til~~~~~~gL~~~~~~~~~-~v~-~~~~~~~v~~G~~l~~~t~g~~~ 75 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE---DGLLTILFQDEVGGLQVRDDGEWV-DVP-PPPGGFIVNFGDALEILTNGRYP 75 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-----SSEEEEEETSTS-EEEEETTEEE-E-----TTCEEEEEBHHHHHHTTTSS-
T ss_pred CCEEEEEECCCcccCCceeCCCcCC---CCeEEEEecccchheecccccccc-Ccc-CccceeeeeceeeeecccCCccC
Confidence 4789999999 667899999854 35555544 55667776542100 000 001134444455 4455555888
Q ss_pred ccccccCCCC-CCeEEEEcc
Q 011406 253 IAKHAISSIR-KQRILVTFT 271 (486)
Q Consensus 253 ~WkHgIPk~r-~~RISLTFR 271 (486)
.+.|+|.... +.|+||||+
T Consensus 76 ~~~HrV~~~~~~~R~s~~~f 95 (98)
T PF03171_consen 76 ATLHRVVPPTEGERYSLTFF 95 (98)
T ss_dssp ---EEEE--STS-EEEEEEE
T ss_pred CceeeeEcCCCCCEEEEEEE
Confidence 9999999974 999999997
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=95.55 E-value=0.0063 Score=51.13 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=51.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCEEEE--EcCce-------eeEeeeccCCCCCCCCcccEEEE-----ecCCcEEEec
Q 011406 182 CIVDVFNEGDHSQPHISPSWFGRPVCIL--FLTEC-------DMTFGRMIGIDHPGDYRGTLRLS-----VAPGSLLVMQ 247 (486)
Q Consensus 182 cLIN~Y~pGdgI~pHvD~p~fg~PIvsL--SLS~c-------vM~Fgr~~~~~~~g~~r~~~~L~-----L~~GSLLVMs 247 (486)
|-|+.|.+|+.+.||.|.......++++ -|++. .+.|.... + .. .....+. ...|+++|+.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~--~-~~--~~~~~~~~~~~~p~~g~~v~F~ 75 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSK--D-SD--DVSREVEDFDIVPKPGRLVIFP 75 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS----TS--STCEEEGGGSEE-BTTEEEEEE
T ss_pred CEEEEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccc--c-CC--CcceEEEeccccCCCCEEEEEe
Confidence 5689999999999999975444455543 35422 34443321 0 01 1122333 8999999999
Q ss_pred cccccccccccCCC--CCCeEEEEc
Q 011406 248 GKSADIAKHAISSI--RKQRILVTF 270 (486)
Q Consensus 248 GeAR~~WkHgIPk~--r~~RISLTF 270 (486)
+ ....|++.++ ..+|++|++
T Consensus 76 ~---~~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 76 S---DNSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp S---CTCEEEEEEE-EESEEEEEEE
T ss_pred C---CCCeecCcccCCCCCEEEEEE
Confidence 9 4677999987 679999986
No 13
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=95.03 E-value=0.078 Score=53.27 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCCEEEEeccCCCCC-----------------CCCCCCCCCCCC-CEEEEEc---C--ceeeEeeeccCCCCCCCCccc
Q 011406 177 VKPDSCIVDVFNEGDH-----------------SQPHISPSWFGR-PVCILFL---T--ECDMTFGRMIGIDHPGDYRGT 233 (486)
Q Consensus 177 ~~PNqcLIN~Y~pGdg-----------------I~pHvD~p~fg~-PIvsLSL---S--~cvM~Fgr~~~~~~~g~~r~~ 233 (486)
+.||-+|||++++... ++||.|+..-+. +|+.-|- . ......+=+ .++ + ..+.
T Consensus 136 ~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~StVAVY~~s~~~~~~~~W~VgLk-a~D--~-~tP~ 211 (253)
T PF12933_consen 136 CEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVERSTVAVYSYSCEEPEPADWHVGLK-AWD--I-ETPG 211 (253)
T ss_dssp ----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT--EEEEEEE-----TTSEEEEEE-TT-----SS-E
T ss_pred eeeehhhhhccCcccccccccccccccCCcceeeeeccccccccccceEEEEecCCCCCCCceEEEEe-ecC--C-CCCe
Confidence 5899999999998222 246666543332 4444222 1 111111111 111 1 1256
Q ss_pred EEEEecCCcEEEeccccccccccccCCCCCCeEEEEccc
Q 011406 234 LRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTK 272 (486)
Q Consensus 234 ~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~RISLTFRk 272 (486)
+.+.|+.||++.|-++....-+|+|-.-..+|+|-|-|-
T Consensus 212 L~vPL~sgd~Y~Mldd~N~tHqH~VlaG~~~RfSSTHRV 250 (253)
T PF12933_consen 212 LAVPLRSGDCYYMLDDFNATHQHCVLAGSSARFSSTHRV 250 (253)
T ss_dssp EEEEE-TT-EEEE-TTHHHHEEEEEE--SS-EEEEEEE-
T ss_pred eEEeccCCCeEEEccccchhhHHHHhcCCCcccccccee
Confidence 999999999999999999999999999888899999884
No 14
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=93.88 E-value=1.3 Score=46.17 Aligned_cols=169 Identities=12% Similarity=0.220 Sum_probs=91.0
Q ss_pred cccCCceEEeCCCCCHHHHHHHHHHHHhHHhcCCceeec---CceEEecccccccCCceeeecCCcccCCCCCcccCCCC
Q 011406 73 VNVVDGLKLYEEVSGNSEVSKLVSLVNDLRTAGKRGQIQ---GPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGT 149 (486)
Q Consensus 73 VnvvpGL~l~pdFLS~eEe~~Lls~L~el~~s~Rr~qly---G~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~ 149 (486)
+..-|-+++|+||||.+|++.|++...... .+..... |+...-..|+ ..|..+.
T Consensus 50 lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l--~~S~v~~~~~g~~~~s~~RT---------S~~~~l~------------ 106 (310)
T PLN00052 50 VSWQPRIFVYKGFLSDAECDHLVKLAKKKI--QRSMVADNKSGKSVMSEVRT---------SSGMFLD------------ 106 (310)
T ss_pred ecCCCCEEEECCcCCHHHHHHHHHhccccc--ccceeecCCCCccccCCCEE---------ecceeec------------
Confidence 344578999999999999999997765311 0111100 1111100011 0000000
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCCC-------CCCCEEEEEc--Cce----e
Q 011406 150 SRDRRIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPSW-------FGRPVCILFL--TEC----D 215 (486)
Q Consensus 150 ~~~~~~~PiP~~L~~LidRLv~~~vl~-~~PNqcLIN~Y~pGdgI~pHvD~p~-------fg~PIvsLSL--S~c----v 215 (486)
..--+.+..|.+|+.....++ ..-+.+-|=.|..|+.-.+|.|--. -++.++++.+ ++. .
T Consensus 107 ------~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGe 180 (310)
T PLN00052 107 ------KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGE 180 (310)
T ss_pred ------CCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCc
Confidence 000236788888886654444 2334555667999999999997321 2456777544 321 1
Q ss_pred eEeeeccCCCC-C-C-C----CcccEEEEecCCcEEEecc-----ccccccccccCC-CCCCeEEEEc
Q 011406 216 MTFGRMIGIDH-P-G-D----YRGTLRLSVAPGSLLVMQG-----KSADIAKHAISS-IRKQRILVTF 270 (486)
Q Consensus 216 M~Fgr~~~~~~-~-g-~----~r~~~~L~L~~GSLLVMsG-----eAR~~WkHgIPk-~r~~RISLTF 270 (486)
-.|-....... + + . ....+.|.=..|+.|++.- ..-..-.|+..+ +.+.++.+|.
T Consensus 181 T~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atk 248 (310)
T PLN00052 181 TVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPK 248 (310)
T ss_pred eecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEE
Confidence 12211100000 0 0 0 0124788889999999753 333345788888 4567887774
No 15
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=93.59 E-value=1.1 Score=45.94 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=31.9
Q ss_pred cEEEEecCCcEEEeccccccccccccCC--C-CCCeEEEEcccccCCCC
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISS--I-RKQRILVTFTKSQPKKL 278 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk--~-r~~RISLTFRkV~p~~~ 278 (486)
.+.+.|+.||+++|.+.+- |+=-+ . ..+|+.+++|-+.....
T Consensus 208 ~v~~~lkaGd~~~f~~~t~----HgS~~N~S~~~~R~~~~~ry~~~~~~ 252 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWSTLM----HASYPNSGESQMRMGFASRYVPSFVH 252 (288)
T ss_pred eeeeeeCCceEEEECCCce----ecCCCCCCCCceEEEEEEEEcCCCce
Confidence 4688999999999999754 55444 2 34699999998865443
No 16
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=92.78 E-value=0.92 Score=44.45 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=49.9
Q ss_pred EEEeccCCCCCCCCCCCCCCC------CCCEEE-EEcCceeeEeeeccCCCCCC-----CCcccEEEEecCCcEEEeccc
Q 011406 182 CIVDVFNEGDHSQPHISPSWF------GRPVCI-LFLTECDMTFGRMIGIDHPG-----DYRGTLRLSVAPGSLLVMQGK 249 (486)
Q Consensus 182 cLIN~Y~pGdgI~pHvD~p~f------g~PIvs-LSLS~cvM~Fgr~~~~~~~g-----~~r~~~~L~L~~GSLLVMsGe 249 (486)
=+-|.|.+|+.-++|+|...- +..|-+ || |...|.-.+..+ -| +.=+...|.|+.|||++.-+.
T Consensus 84 P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls---~tlfl~DPedYd-GGeLVv~dtYg~h~VklPAGdLVlypSt 159 (229)
T COG3128 84 PLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLS---CTLFLSDPEDYD-GGELVVNDTYGNHRVKLPAGDLVLYPST 159 (229)
T ss_pred chhhhccCCCcccccccCcccccCCCCCceeEeeee---eeeecCCccccC-CceEEEeccccceEEeccCCCEEEcccc
Confidence 357899999999999986421 111222 22 222222111100 11 111368899999999999888
Q ss_pred cccccccccCC-CCCCeEEEEc
Q 011406 250 SADIAKHAISS-IRKQRILVTF 270 (486)
Q Consensus 250 AR~~WkHgIPk-~r~~RISLTF 270 (486)
+ .|.|.+ +|+.|+-.-|
T Consensus 160 S----lH~VtPVTRg~R~asff 177 (229)
T COG3128 160 S----LHEVTPVTRGERFASFF 177 (229)
T ss_pred c----ceeccccccCceEEEee
Confidence 6 477777 6889987665
No 17
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=86.35 E-value=2.3 Score=40.75 Aligned_cols=104 Identities=19% Similarity=0.357 Sum_probs=64.3
Q ss_pred CCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEEE-EEcCce--e-----eEeeeccCCC
Q 011406 157 PIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVCI-LFLTEC--D-----MTFGRMIGID 225 (486)
Q Consensus 157 PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg~---PIvs-LSLS~c--v-----M~Fgr~~~~~ 225 (486)
.+|+.+.+++++.-+.+ ..+|..+|+ .|..|++...|+|- ||+ |+-. +.|++- + |.+.....
T Consensus 42 ~yP~~~~~fl~~ch~aG--Q~rptplll-rY~~gdyn~LHqdl--yGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrP-- 114 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAG--QTRPTPLLL-RYGPGDYNCLHQDL--YGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRP-- 114 (173)
T ss_pred CCCccHHHHHHHHHhcc--CCCCchhhh-eeCCCCccccccCC--CCCcccCeEEEEEcCCCCCcccCceEEEEEecC--
Confidence 56777888777754321 256665555 69999999999973 333 4433 344432 2 22322211
Q ss_pred CCCCCcccEEEEecCCcEEEec----------cccccccccccCCCC-CCeEEEE
Q 011406 226 HPGDYRGTLRLSVAPGSLLVMQ----------GKSADIAKHAISSIR-KQRILVT 269 (486)
Q Consensus 226 ~~g~~r~~~~L~L~~GSLLVMs----------GeAR~~WkHgIPk~r-~~RISLT 269 (486)
+.+ ....-|.|..||.+|+. |.-|-.-+|+|..++ ++|..|.
T Consensus 115 -R~Q-SR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 115 -RMQ-SRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred -Ccc-CccccCCcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 111 12456899999999995 455666789999865 5776653
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=81.53 E-value=3 Score=35.58 Aligned_cols=84 Identities=18% Similarity=0.329 Sum_probs=41.2
Q ss_pred EEEeccCCCCCCCCCC-CCCCCCCCEEEEEc--CceeeEeeeccCC----------CCCCCCcccEEEEecCCcEEEecc
Q 011406 182 CIVDVFNEGDHSQPHI-SPSWFGRPVCILFL--TECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLLVMQG 248 (486)
Q Consensus 182 cLIN~Y~pGdgI~pHv-D~p~fg~PIvsLSL--S~cvM~Fgr~~~~----------~~~g~~r~~~~L~L~~GSLLVMsG 248 (486)
|=+|.|+.|+...+|. ....+. .|.=|.+ ....+.|...... +..........+..+.|+|||+-+
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~~S-gVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs 80 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSWLS-GVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPS 80 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-SEE-EEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEET
T ss_pred eeEEEeCCCCccCceECCCcCEE-EEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCC
Confidence 3478899999988887 333322 2222344 2234566533210 000112346888999999999997
Q ss_pred ccccccccccCC--CCCCeEEEEc
Q 011406 249 KSADIAKHAISS--IRKQRILVTF 270 (486)
Q Consensus 249 eAR~~WkHgIPk--~r~~RISLTF 270 (486)
-. .|++.+ ....||||-|
T Consensus 81 ~l----~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 81 WL----WHGVPPNNSDEERISISF 100 (101)
T ss_dssp TS----EEEE----SSS-EEEEEE
T ss_pred CC----EEeccCcCCCCCEEEEEc
Confidence 64 488888 4468999987
No 19
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=74.90 E-value=3.6 Score=39.12 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=31.1
Q ss_pred cEEEEecCCcEEEeccccccccccccCCCC------CCeEEEEc
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISSIR------KQRILVTF 270 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r------~~RISLTF 270 (486)
-++|.+.+||+|++.|. ...|++.++. ..||||.|
T Consensus 127 g~~~~~~~GtVl~~~~~---~~~Hgvtpv~~~~~~~~~R~slvf 167 (171)
T PF12851_consen 127 GVAFAYQPGTVLIFCAK---RELHGVTPVESPNRNHGTRISLVF 167 (171)
T ss_pred CEEEecCCCcEEEEccc---ceeeecCcccCCCCCCCeEEEEEE
Confidence 58899999999999987 4689999976 89999988
No 20
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=73.71 E-value=38 Score=35.15 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=80.7
Q ss_pred cccCCceEEeCCCCCHHHHHHHHHHHHh-HHhcCCceeecCceEEec-c--cccccCCceeeecCCcccCCCCCcccCCC
Q 011406 73 VNVVDGLKLYEEVSGNSEVSKLVSLVND-LRTAGKRGQIQGPAYVVS-K--RPIRGHGREVIQLGLPIVDGPPEDEIAGG 148 (486)
Q Consensus 73 VnvvpGL~l~pdFLS~eEe~~Lls~L~e-l~~s~Rr~qlyG~t~~~~-r--r~~kg~gR~~~q~G~~Y~y~~~ed~n~~g 148 (486)
+.--|.+.+|.|||+.+|++.|.+.-.. +. ...+...+.+-... . |.- -|. +
T Consensus 93 lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~--~stv~~~~~~~~~~~~~~R~S---------~~t---~---------- 148 (289)
T KOG1591|consen 93 LSWDPRVVLYHDFLSDEECDHLISLAKPKLE--RSTVVADKGTGHSTTSAVRTS---------SGT---F---------- 148 (289)
T ss_pred cccCCceEeehhcCCHHHHHHHHHhhhhhhh--ceeeeccCCcccccceeeEec---------cee---E----------
Confidence 4456789999999999999999876542 22 11121111100000 0 000 000 0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCC-----C------CCCCEEEEEcCceee
Q 011406 149 TSRDRRIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPS-----W------FGRPVCILFLTECDM 216 (486)
Q Consensus 149 ~~~~~~~~PiP~~L~~LidRLv~~~vl~-~~PNqcLIN~Y~pGdgI~pHvD~p-----~------fg~PIvsLSLS~cvM 216 (486)
... .=...+..|-+|+...-.++ ..-...-|=.|..|+.-.+|.|-- . .|..|+++. |
T Consensus 149 ----l~~-~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l-----~ 218 (289)
T KOG1591|consen 149 ----LPD-GASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVL-----M 218 (289)
T ss_pred ----ecC-CCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEE-----E
Confidence 000 11335666666765544443 344555555599999999997532 1 345666643 3
Q ss_pred EeeeccCCCCCC--CCcccEEEEecCCcEEEec-----cccccccccccCCC-CCCeEE
Q 011406 217 TFGRMIGIDHPG--DYRGTLRLSVAPGSLLVMQ-----GKSADIAKHAISSI-RKQRIL 267 (486)
Q Consensus 217 ~Fgr~~~~~~~g--~~r~~~~L~L~~GSLLVMs-----GeAR~~WkHgIPk~-r~~RIS 267 (486)
.+....+....- +....+.|....||.|.+- |+--..=+|+-+++ .+.|++
T Consensus 219 yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~ 277 (289)
T KOG1591|consen 219 YLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWI 277 (289)
T ss_pred EecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeecccee
Confidence 333332210000 0111247888899998862 11111236777773 344443
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=71.82 E-value=29 Score=33.98 Aligned_cols=89 Identities=15% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc--CceeeEeeeccCC----------CCCCCCcccEEEEecCCcEEE
Q 011406 178 KPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL--TECDMTFGRMIGI----------DHPGDYRGTLRLSVAPGSLLV 245 (486)
Q Consensus 178 ~PNqcLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL--S~cvM~Fgr~~~~----------~~~g~~r~~~~L~L~~GSLLV 245 (486)
.+..+=+|.+..|+....|.-+..+-..++=|+. ....+.|...... ..+......+.+.-..|+|||
T Consensus 94 ~i~~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvl 173 (201)
T TIGR02466 94 RIQKAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLL 173 (201)
T ss_pred EEeeEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEE
Confidence 3566778999999988888743321112332455 2234555432110 000011123556779999999
Q ss_pred eccccccccccccCC--CCCCeEEEEc
Q 011406 246 MQGKSADIAKHAISS--IRKQRILVTF 270 (486)
Q Consensus 246 MsGeAR~~WkHgIPk--~r~~RISLTF 270 (486)
+-.-.+ |++.+ ..+.||||.|
T Consensus 174 FPS~L~----H~v~p~~~~~~RISiSF 196 (201)
T TIGR02466 174 FESWLR----HEVPPNESEEERISVSF 196 (201)
T ss_pred ECCCCc----eecCCCCCCCCEEEEEE
Confidence 987654 88888 4579999988
No 22
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=56.69 E-value=34 Score=40.14 Aligned_cols=11 Identities=36% Similarity=0.537 Sum_probs=4.7
Q ss_pred CCCCCCCCCCC
Q 011406 281 TDGQRLASPGI 291 (486)
Q Consensus 281 ~~~~~~~~p~~ 291 (486)
++.+-+.+|.+
T Consensus 509 ae~~al~s~~~ 519 (1102)
T KOG1924|consen 509 AEKQALSSPSQ 519 (1102)
T ss_pred hhhhhccCccc
Confidence 33444444443
No 23
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.04 E-value=63 Score=31.95 Aligned_cols=110 Identities=23% Similarity=0.392 Sum_probs=64.2
Q ss_pred CCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCCCCCCCCCCCCCCCC---CEE-EEEcCc--eeeEeeecc-CCCCCC
Q 011406 156 EPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEGDHSQPHISPSWFGR---PVC-ILFLTE--CDMTFGRMI-GIDHPG 228 (486)
Q Consensus 156 ~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pGdgI~pHvD~p~fg~---PIv-sLSLS~--cvM~Fgr~~-~~~~~g 228 (486)
.+||..|.+.++|.-.. -..++.-+|+. |-+||+-..|+| .||+ |+- .|.||+ .+|+=+.-. ....+.
T Consensus 103 ~r~P~tlad~L~~CHaA--GQ~RpTpLlLq-YgpgD~NcLHQD--LYGelvFPLQvailLsePg~DfTGGEF~lvEQRPR 177 (236)
T COG3826 103 ARYPATLADFLARCHAA--GQVRPTPLLLQ-YGPGDYNCLHQD--LYGELVFPLQVAILLSEPGTDFTGGEFVLVEQRPR 177 (236)
T ss_pred CCCchhHHHHHHHHHhc--cCccCCceeEE-ecCCccchhhhh--hhhceeeeeeEEEeccCCCCcccCceEEEEecccc
Confidence 46788888777775321 13677778875 999999999997 3443 322 244543 343321110 000011
Q ss_pred CCcccEEEEecCCcEEEec----------cccccccccccCCCCC-Ce--EEEEc
Q 011406 229 DYRGTLRLSVAPGSLLVMQ----------GKSADIAKHAISSIRK-QR--ILVTF 270 (486)
Q Consensus 229 ~~r~~~~L~L~~GSLLVMs----------GeAR~~WkHgIPk~r~-~R--ISLTF 270 (486)
......-+.|..|+-+|+. |..|..-.|++..+++ .| +-|.|
T Consensus 178 ~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIF 232 (236)
T COG3826 178 MQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIF 232 (236)
T ss_pred cccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEe
Confidence 1112456899999999985 5556666788877553 33 44444
No 24
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.42 E-value=42 Score=35.11 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=39.8
Q ss_pred cEEEEecCCcEEEeccccccccccccCC--CCCCeEEEEcccccCCCCCCCCCCCCCCCC
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQPKKLTPTDGQRLASPG 290 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk--~r~~RISLTFRkV~p~~~~~~~~~~~~~p~ 290 (486)
.+.+.|+.||+|++.|... |+-.. +...|+.|||+.+..- .+..++.++.++.
T Consensus 192 ~~pv~lekGDallF~~~L~----HaA~aNrT~~~R~A~~~~~~~~~-~~~~~n~~l~~~~ 246 (299)
T COG5285 192 AVPVELEKGDALLFNGSLW----HAAGANRTSADRVALTLQFTVSF-VKQQVNQVLSPPR 246 (299)
T ss_pred ceeeeecCCCEEEEcchhh----hhhhcCCCCcccceEEEEEeecc-ccccCCcccCCCc
Confidence 6889999999999999865 55555 3468999999998776 4556665554433
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=34.17 E-value=5.8e+02 Score=28.95 Aligned_cols=184 Identities=29% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcCccCCCCCC--CCCCccccCCCCCCCCceeecCCC--CCCCCCCCCc
Q 011406 285 RLASPGIAPSPHWGPPPGRPPNHIRHPTGPKHFAPIPTTGVL--PAPAIRAQIPPTNGVPPIFVSPPV--TPAMPFPAPV 360 (486)
Q Consensus 285 ~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~v 360 (486)
....|+.+....=-+++.|-+.-.|-+. .-|.+++. |+++.|+-.++| |+ +.+.|-+ |+
T Consensus 350 ~~~~pa~gRs~PaPPPP~~vPs~ar~PP------Ppp~s~~~~~p~~Pgr~aPp~P----------P~~~ps~~p~~-Pp 412 (569)
T KOG3671|consen 350 PIPLPAQGRSAPAPPPPRRVPSAARPPP------PPPRSRAVSPPAPPGRPAPPPP----------PLGNPSAVPVP-PP 412 (569)
T ss_pred CCCCCccccCCCCCCCCccCCCCCCCCc------CCCCCccccCCCCCCCCCCCCC----------CCCCCCCCCCC-CC
Q ss_pred cCCCCCCC--CCCCCCCCCCCCCCC----CCCCCCceeeeCCCCCCCCCCcccCCccccccCCCccCchhhhccCC---C
Q 011406 361 PIPPGSTG--WTAAPPRHTPPPPPP----RLPVPGTGVFLPPPGSGGSSSPRQVSSAATEHLIPEMGSQAEKENGS---G 431 (486)
Q Consensus 361 ~~~~~~~~--w~~~~~~~~~~~~~~----r~p~~gtgvflp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 431 (486)
|-|+...| =.+++|-+|+|++.| -=|-|=+--.+|+-|.|...+..+..-.+.-.-.-.+.+....+.-. +
T Consensus 413 PPPPs~~g~~Pp~apPppPPPPPmPs~gagppPPP~~~~~Pp~~aga~aPp~p~~~~al~~~i~~G~ql~~ve~t~~~~~ 492 (569)
T KOG3671|consen 413 PPPPSLPGSAPPSAPPPPPPPPPMPSTGAGPPPPPSAPIAPPQGAGAAAPPAPPARPALLDAIAPGGQLKKVETTALSSG 492 (569)
T ss_pred CCCCcccCCCCCCCCCCCCcCCCCCccCCCCCCCCCccCCCCCccCCCCCCCCCCccccccccCccccccceeeccCcCc
Q ss_pred CcCCCcccc------cccccccccCCCCCCccCCCcc-------cchhhhcc----ccccc-cccccccCCC
Q 011406 432 KSNHETNAS------KEKLVGETQGQGCNGSVDGTGS-------VKAVMKEE----NQHQS-VEDTSVAGKD 485 (486)
Q Consensus 432 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~----~~~~~-~~~~~~~~~~ 485 (486)
.+-.+.-++ -++.+......+-+--+-+.++ ..-+|++. |+|.+ +||..-.+++
T Consensus 493 dgR~~LmaqIRqG~~Lk~v~~~~~~~~~~s~s~~~a~~~~lagal~~~m~ara~a~~i~~tkd~deDe~d~~ 564 (569)
T KOG3671|consen 493 DGRDALMAQIRQGGQLKKVDSRKLGARRSSASPPAASPGGLAGALANLMDARASALAIHSTKDEDEDEDDEN 564 (569)
T ss_pred ccHHHHHHHHHhcccccccchhhhccccCCCCCCCCCCCccccHHHHHHHHHHHhhcccccccccccccccc
No 26
>PLN02904 oxidoreductase
Probab=33.97 E-value=1.1e+02 Score=32.22 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=47.9
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-CceeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccc
Q 011406 181 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 253 (486)
Q Consensus 181 qcLIN~Y~pG------dgI~pHvD~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~ 253 (486)
.+-+|+|.+- -++++|.|- + .++|.+ ...=++.... .|+ =+.|.-.+|+|+|.-|+.=..
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~---g--~lTlL~qd~~GLQV~~~-----~g~---Wi~V~p~pgalVVNiGD~Le~ 275 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDF---G--SLTILLQSSQGLQIMDC-----NKN---WVCVPYIEGALIVQLGDQVEV 275 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCC---C--ceEEEecCCCeeeEEeC-----CCC---EEECCCCCCeEEEEccHHHHH
Confidence 4668999652 256788873 2 344434 2111222111 222 377778899999999998777
Q ss_pred cc--------cccCC-CCCCeEEEEccc
Q 011406 254 AK--------HAISS-IRKQRILVTFTK 272 (486)
Q Consensus 254 Wk--------HgIPk-~r~~RISLTFRk 272 (486)
|. |.|-. ....|+||.|--
T Consensus 276 ~TNG~~kSt~HRVv~~~~~~R~Si~~F~ 303 (357)
T PLN02904 276 MSNGIYKSVVHRVTVNKDYKRLSFASLH 303 (357)
T ss_pred HhCCeeeccCCcccCCCCCCEEEEEEee
Confidence 74 44432 345799999864
No 27
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=31.71 E-value=21 Score=38.12 Aligned_cols=45 Identities=20% Similarity=0.432 Sum_probs=35.8
Q ss_pred CCCEEEEeccCCCCCCCCCCCCCCC------CCCEEEEEcCceeeEeeecc
Q 011406 178 KPDSCIVDVFNEGDHSQPHISPSWF------GRPVCILFLTECDMTFGRMI 222 (486)
Q Consensus 178 ~PNqcLIN~Y~pGdgI~pHvD~p~f------g~PIvsLSLS~cvM~Fgr~~ 222 (486)
-||.|++|+|.+-..++-|+|-.+| +-+|..+|.+++.|-++..+
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d~~f~~~~~~ 363 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGDAEFLYGDQR 363 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCccccccCchh
Confidence 6899999999998889888865444 34788888878888887654
No 28
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.15 E-value=66 Score=29.07 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.9
Q ss_pred CceEEeCCCCCHHHHHHHHHHHHhH
Q 011406 77 DGLKLYEEVSGNSEVSKLVSLVNDL 101 (486)
Q Consensus 77 pGL~l~pdFLS~eEe~~Lls~L~el 101 (486)
.|..+++++|+++|.++|.+.++++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 4888999999999999999999876
No 29
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=27.38 E-value=9e+02 Score=26.98 Aligned_cols=10 Identities=50% Similarity=0.863 Sum_probs=7.5
Q ss_pred cCCceEEeCC
Q 011406 75 VVDGLKLYEE 84 (486)
Q Consensus 75 vvpGL~l~pd 84 (486)
..+||++|.|
T Consensus 144 gk~gLkfYTd 153 (518)
T KOG1830|consen 144 GKDGLKFYTD 153 (518)
T ss_pred CcccceeecC
Confidence 4678888876
No 30
>PLN02947 oxidoreductase
Probab=24.09 E-value=2.2e+02 Score=30.35 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=47.0
Q ss_pred EEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeEeeeccCCCCCCCCcccEEEEecCCcEEEecccccc
Q 011406 181 SCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSAD 252 (486)
Q Consensus 181 qcLIN~Y~pG------dgI~pHvD~p~fg~PIvsLSL-S~-cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~ 252 (486)
.+.+|+|.+- -++++|.|. .+++|.+ .+ .=++..+ .|+ =+.|.-.+|+++|.-|+.=.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~-----g~lTlL~Qd~v~GLQV~~------~g~---Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDY-----GFLTLLLQDEVEGLQIMH------AGR---WVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCC-----CceEEEEecCCCCeeEeE------CCE---EEeCCCCCCeEEEEeCceee
Confidence 4668999652 256788873 3445544 22 1122211 222 26666678888888888777
Q ss_pred ccc--------cccC-CCCCCeEEEEcccc
Q 011406 253 IAK--------HAIS-SIRKQRILVTFTKS 273 (486)
Q Consensus 253 ~Wk--------HgIP-k~r~~RISLTFRkV 273 (486)
.|. |.+- .....|+||.|---
T Consensus 292 ~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 292 IFSNGRYKSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred eeeCCEEeccccccccCCCCCEEEEEEEec
Confidence 774 5442 23467999998554
No 31
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.00 E-value=2.4e+02 Score=29.73 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=48.4
Q ss_pred CEEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccc
Q 011406 180 DSCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 251 (486)
Q Consensus 180 NqcLIN~Y~pG------dgI~pHvD~p~fg~PIvsLSL-S~-cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR 251 (486)
..+-+|+|.+- -++++|.|- | +++|.+ .+ .=++... .|++ +.|.-.+|+++|.-|++=
T Consensus 200 ~~lRl~~YPp~~~~~~~~g~~aHTD~---g--~lTlL~Qd~v~GLQV~~------~g~W---v~V~p~pgalVVNiGD~L 265 (341)
T PLN02984 200 GVIRVYRYPQCSNEAEAPGMEVHTDS---S--VISILNQDEVGGLEVMK------DGEW---FNVKPIANTLVVNLGDMM 265 (341)
T ss_pred ceEEEEeCCCCCCcccccCccCccCC---C--ceEEEEeCCCCCeeEee------CCce---EECCCCCCeEEEECChhh
Confidence 35779999652 246788773 2 334433 11 1122211 2333 667778899999999988
Q ss_pred cccc--------ccc--CCCCCCeEEEEcc
Q 011406 252 DIAK--------HAI--SSIRKQRILVTFT 271 (486)
Q Consensus 252 ~~Wk--------HgI--Pk~r~~RISLTFR 271 (486)
..|. |.| +.....|+||-|-
T Consensus 266 e~wTNg~~kSt~HRVv~~~~~~~R~Sia~F 295 (341)
T PLN02984 266 QVISDDEYKSVLHRVGKRNKKKERYSICYF 295 (341)
T ss_pred hhhcCCeeeCCCCccccCCCCCCeEEEEEE
Confidence 8886 777 2335679999885
No 32
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=23.14 E-value=1.8e+02 Score=29.48 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=46.2
Q ss_pred EEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccc
Q 011406 182 CIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADI 253 (486)
Q Consensus 182 cLIN~Y~pG------dgI~pHvD~p~fg~PIvsLSL-S~-cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~ 253 (486)
+-+|+|.+- -++++|.|- ..++|.+ .+ .=++..+ .|++ +.|.-.+|+++|.-|++=..
T Consensus 118 lrl~~YP~~~~~~~~~g~~~HtD~-----g~lTlL~qd~v~GLqV~~------~g~W---i~V~p~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 118 ITVSYYPPCPQPELTLGLQSHSDF-----GAITLLIQDDVEGLQLLK------DAEW---LMVPPISDAILIIIADQTEI 183 (262)
T ss_pred heeecCCCCCCcccccCCcCCcCC-----CeeEEEEeCCCCceEEee------CCeE---EECCCCCCcEEEEccHHHHH
Confidence 568889642 256788873 2344434 22 1122211 2222 55666789999999998888
Q ss_pred cc--------cccCC-CCCCeEEEEccc
Q 011406 254 AK--------HAISS-IRKQRILVTFTK 272 (486)
Q Consensus 254 Wk--------HgIPk-~r~~RISLTFRk 272 (486)
|. |.|-. ....|+||.|--
T Consensus 184 ~tng~~~S~~HRVv~~~~~~R~Sia~F~ 211 (262)
T PLN03001 184 ITNGNYKSAQHRAIANANKARLSVATFH 211 (262)
T ss_pred HhCCccccccceEEcCCCCCEEEEEEEE
Confidence 87 44432 245799998864
No 33
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=3.7e+02 Score=29.22 Aligned_cols=111 Identities=10% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCCCCcHHHHHHHHHHHhCccCC-CCCCEEEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeEeeeccCCCC----
Q 011406 153 RRIEPIPSLLQDVIDRLVGLQIMT-VKPDSCIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDH---- 226 (486)
Q Consensus 153 ~~~~PiP~~L~~LidRLv~~~vl~-~~PNqcLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~---- 226 (486)
+.++-|-+-+..|++++ ..++ .+-|-++|-+=.+|.+.++|.|.- -|..|=. +.+....+.......
T Consensus 94 q~vd~w~p~v~~l~~~F---rflP~wr~ddiMIS~a~~GGgvg~H~D~Y----DVfliQg~G~RRW~v~~~~~~~~~~~~ 166 (383)
T COG2850 94 QAVDHWHPEVAALMEPF---RFLPDWRIDDIMISFAAPGGGVGPHFDQY----DVFLIQGQGRRRWRVGKKCNMSTLCPH 166 (383)
T ss_pred ehhhhcCHHHHHHHHHh---ccCccccccceEEEEecCCCccCccccch----heeEEeecccceeecCCcccccCcCCC
Confidence 34455666667777764 3344 788999999657889999999852 2333333 444444443311000
Q ss_pred -----CCCCcccEEEEecCCcEEEeccccccccccccCCCCCCeEEEEcccc
Q 011406 227 -----PGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRILVTFTKS 273 (486)
Q Consensus 227 -----~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~RISLTFRkV 273 (486)
...+.......|++||+|-+=- + .|.|+|+--.---.|+-||--
T Consensus 167 ~d~~~~~~f~~~~d~vlepGDiLYiPp--~-~~H~gvae~dc~tySvG~r~P 215 (383)
T COG2850 167 PDLLILAPFEPDIDEVLEPGDILYIPP--G-FPHYGVAEDDCMTYSVGFRAP 215 (383)
T ss_pred cchhhcCCCCchhhhhcCCCceeecCC--C-CCcCCcccccccceeeeccCC
Confidence 0112235778899999876632 2 577888875555577777753
No 34
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.75 E-value=2.3e+02 Score=29.89 Aligned_cols=80 Identities=14% Similarity=0.225 Sum_probs=47.5
Q ss_pred CEEEEeccCCC------CCCCCCCCCCCCCCCEEEEEc-Cc-eeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccc
Q 011406 180 DSCIVDVFNEG------DHSQPHISPSWFGRPVCILFL-TE-CDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSA 251 (486)
Q Consensus 180 NqcLIN~Y~pG------dgI~pHvD~p~fg~PIvsLSL-S~-cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR 251 (486)
..+.+|+|.+- -++++|.|- ..++|.+ .+ -=+...+ .|+ =+.|.-.+|+|+|--|++=
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~-----g~lTlL~Qd~v~GLQV~~------~g~---Wi~V~p~pgalvVNiGD~L 262 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDA-----NLITVLLQDEVSGLQVFK------DGK---WIAVNPIPNTFIVNLGDQM 262 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCC-----CceEEEEECCCCceEEEE------CCc---EEECCCcCCeEEEEcCHHH
Confidence 45778999652 246788773 2344444 21 1122211 222 3667778899999988877
Q ss_pred cccc--------cccC-CCCCCeEEEEcccc
Q 011406 252 DIAK--------HAIS-SIRKQRILVTFTKS 273 (486)
Q Consensus 252 ~~Wk--------HgIP-k~r~~RISLTFRkV 273 (486)
..|. |.|- +....|+||.|-.-
T Consensus 263 ~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~ 293 (348)
T PLN02912 263 QVISNDKYKSVLHRAVVNTDKERISIPTFYC 293 (348)
T ss_pred HHHhCCEEEcccccccCCCCCCEEEEEEEec
Confidence 6774 4442 23467999998543
Done!