Query 011406
Match_columns 486
No_of_seqs 172 out of 1118
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 07:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011406.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011406hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuwa1 b.82.2.10 (A:70-279) A 100.0 2.2E-33 1.6E-37 262.4 13.0 183 75-275 17-210 (210)
2 d2fdia1 b.82.2.10 (A:15-214) A 100.0 7.2E-31 5.3E-35 247.7 15.1 181 76-274 2-199 (200)
3 d2fcta1 b.82.2.9 (A:3-310) Syr 95.7 0.089 6.5E-06 48.4 14.2 42 233-278 214-259 (308)
4 d2a1xa1 b.82.2.9 (A:43-338) Ph 90.0 1.6 0.00012 39.1 12.4 38 233-274 203-242 (296)
5 d1vrba1 b.82.2.11 (A:8-326) Pu 33.2 1.3E+02 0.0096 25.9 10.6 34 233-271 198-233 (319)
6 d1w9ya1 b.82.2.1 (A:2-308) 1-a 25.4 47 0.0034 29.6 6.0 40 233-272 202-250 (307)
7 d1gp6a_ b.82.2.1 (A:) Anthocya 25.3 36 0.0026 30.8 5.2 40 234-273 257-305 (349)
8 d2gm6a1 b.82.1.19 (A:11-202) C 15.6 1.5E+02 0.011 24.9 6.9 78 182-268 70-151 (192)
9 d1zela1 a.4.5.83 (A:1-82) Hypo 14.7 30 0.0022 25.5 1.5 15 384-399 63-77 (82)
10 d1yhfa1 b.82.1.9 (A:1-112) Hyp 13.3 1.4E+02 0.01 22.3 5.4 64 186-270 43-107 (112)
No 1
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.2e-33 Score=262.39 Aligned_cols=183 Identities=16% Similarity=0.208 Sum_probs=143.0
Q ss_pred cCCceEEeCCCCCHHHHHHHHHHHH-hHHhcCCceeecCceEEecccccccCCceeeecCCcccCCCCCcccCCCCCCCC
Q 011406 75 VVDGLKLYEEVSGNSEVSKLVSLVN-DLRTAGKRGQIQGPAYVVSKRPIRGHGREVIQLGLPIVDGPPEDEIAGGTSRDR 153 (486)
Q Consensus 75 vvpGL~l~pdFLS~eEe~~Lls~L~-el~~s~Rr~qlyG~t~~~~rr~~kg~gR~~~q~G~~Y~y~~~ed~n~~g~~~~~ 153 (486)
.++||.|++|||+++|++.|++.|. ++.|....+..+|+.+..+|++. ++.+ ..|.|... ...
T Consensus 17 g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~pR~~~-----~~~d--~~y~y~~~---------~~~ 80 (210)
T d2iuwa1 17 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTA-----WYGE--LPYTYSRI---------TME 80 (210)
T ss_dssp SCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEE-----EEEC--CCTTSCHH---------HHC
T ss_pred CcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccceeeeeE-----EecC--cCcccccc---------ccc
Confidence 4678999999999999999999985 67898888889999888877662 2222 34444311 123
Q ss_pred CCCCCcHHHHHHHHHHHhCccCCCCCCEEEEeccCCC-CCCCCCCCCC-CCC--CCEEEEEc-CceeeEeeeccCCCCCC
Q 011406 154 RIEPIPSLLQDVIDRLVGLQIMTVKPDSCIVDVFNEG-DHSQPHISPS-WFG--RPVCILFL-TECDMTFGRMIGIDHPG 228 (486)
Q Consensus 154 ~~~PiP~~L~~LidRLv~~~vl~~~PNqcLIN~Y~pG-dgI~pHvD~p-~fg--~PIvsLSL-S~cvM~Fgr~~~~~~~g 228 (486)
...+||++|..|.+++.+ .....+|+|+||.|.+| ++|+||+|.. .|+ ..|++||| ++|+|.|+++......+
T Consensus 81 ~~~~~~~~l~~l~~~~~~--~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~~~ 158 (210)
T d2iuwa1 81 PNPHWHPVLRTLKNRIEE--NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENG 158 (210)
T ss_dssp CBSSCCHHHHHHHHHHHH--HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC-----
T ss_pred cCCCCcHHHHHHHHhhhh--hcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEccccccccCC
Confidence 346799999999999854 34678999999999776 6899999754 464 47999999 99999998865422211
Q ss_pred --CCcccEEEEecCCcEEEeccccccccccccCC---CCCCeEEEEcccccC
Q 011406 229 --DYRGTLRLSVAPGSLLVMQGKSADIAKHAISS---IRKQRILVTFTKSQP 275 (486)
Q Consensus 229 --~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk---~r~~RISLTFRkV~p 275 (486)
...+.++|.|++||||||.|++|+.|+|+||+ .+++|||||||+++|
T Consensus 159 ~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~p 210 (210)
T d2iuwa1 159 DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYP 210 (210)
T ss_dssp ---CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC
T ss_pred ccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeecC
Confidence 12357999999999999999999999999997 467999999999975
No 2
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=7.2e-31 Score=247.66 Aligned_cols=181 Identities=17% Similarity=0.274 Sum_probs=132.9
Q ss_pred CCceEEeCCCCCHHHHHHHHHHHHhHHhcC--Cceee-cCceEEecccccccCCc--eeeecCCcccCCCCCcccCCCCC
Q 011406 76 VDGLKLYEEVSGNSEVSKLVSLVNDLRTAG--KRGQI-QGPAYVVSKRPIRGHGR--EVIQLGLPIVDGPPEDEIAGGTS 150 (486)
Q Consensus 76 vpGL~l~pdFLS~eEe~~Lls~L~el~~s~--Rr~ql-yG~t~~~~rr~~kg~gR--~~~q~G~~Y~y~~~ed~n~~g~~ 150 (486)
-||+.++++|+.. |+++|++.|+++.... |+..+ .|+.+.+. |...|+ |+.+. ..|.|.... ..
T Consensus 2 apG~v~l~~f~~~-~~~~ll~~~~~~~~~~p~r~~~~p~g~~msv~---~~~~g~~gW~~d~-~~Yry~~~~------~~ 70 (200)
T d2fdia1 2 AAGAVILRRFAFN-AAEQLIRDINDVASQSPFRQMVTPGGYTMSVA---MTNCGHLGWTTHR-QGYLYSPID------PQ 70 (200)
T ss_dssp CTTEEEETTTTTT-THHHHHHHHHHHHHHSCCBCCBCTTSCBCSSE---EEEESSBEEEEET-TEEEEESBC------TT
T ss_pred CCCEEEECCcCCH-HHHHHHHHHHHHHhhCCceeeecCCCCcceEE---EEeccccccccCC-cCccccccc------CC
Confidence 5899999999864 6667999887654211 22222 35555432 112222 44443 246664211 11
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCccC-CCCCCEEEEeccCCCCCCCCCC--CCCCCCCCEEEEEc-CceeeEeeeccCCCC
Q 011406 151 RDRRIEPIPSLLQDVIDRLVGLQIM-TVKPDSCIVDVFNEGDHSQPHI--SPSWFGRPVCILFL-TECDMTFGRMIGIDH 226 (486)
Q Consensus 151 ~~~~~~PiP~~L~~LidRLv~~~vl-~~~PNqcLIN~Y~pGdgI~pHv--D~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~ 226 (486)
....+.+||.+|.+|+++++....+ ...||+||||+|++|++|++|. |+..|+.+|++||| ++|+|.|++...
T Consensus 71 ~~~~wp~iP~~l~~L~~~~~~~~~~~~~~pn~~LvN~Y~~G~~~~~h~dddE~~~~~pIvslSLG~~~~f~f~~~~~--- 147 (200)
T d2fdia1 71 TNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKR--- 147 (200)
T ss_dssp TSSBCCCCCHHHHHHHHHHHHHHTCTTCCCSEEEEEEECTTCCEEEECCCCSSCTTSCEEEEEEESCEEEEECCSST---
T ss_pred CCCCCCCccHHHHHHHHHHHHHcCCCccCCCeeEEEEecCCCCccccccCCccccCCCceEEEEeCCeeEEeccccc---
Confidence 3567889999999999999765444 4789999999999999998876 45789999999999 999999987532
Q ss_pred CCCCcccEEEEecCCcEEEeccccccccccccCCC--------CCCeEEEEccccc
Q 011406 227 PGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSI--------RKQRILVTFTKSQ 274 (486)
Q Consensus 227 ~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~--------r~~RISLTFRkV~ 274 (486)
....+++.|++||||||+|++|+ |+|+|+++ ++.|||||||++.
T Consensus 148 ---~~~~~~~~L~~Gdllvm~G~~r~-~~H~V~~~~~~~~~~~~~~RislTfR~~g 199 (200)
T d2fdia1 148 ---NDPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRYNLTFRQAG 199 (200)
T ss_dssp ---TSCCEEEEECTTCEEEECGGGGG-CCEEECCCCCCCBTTTBTCEEEEEEECCC
T ss_pred ---CCceEEEEcCCCCEEEeCcchhh-eEecCCcccCCCCCCCCCCeEEEEEEecC
Confidence 13578999999999999999997 88999984 3579999999863
No 3
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}
Probab=95.66 E-value=0.089 Score=48.45 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=32.6
Q ss_pred cEEEEecCCcEEEeccccccccccccCC----CCCCeEEEEcccccCCCC
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISS----IRKQRILVTFTKSQPKKL 278 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk----~r~~RISLTFRkV~p~~~ 278 (486)
.+.+.|++||+||+.+.+- |+-.+ ...+|++|++|-+.+..+
T Consensus 214 ~v~~~lkaGdvlif~~~l~----HgS~pN~~~S~~~R~~~~~rY~p~~~~ 259 (308)
T d2fcta1 214 AVPMQMKAGQFIIFWSTLM----HASYPHSGESQEMRMGFASRYVPSFVH 259 (308)
T ss_dssp CEEECBCTTEEEEEETTSE----EEECCBCSSSSSCEEEEEEEEEETTSE
T ss_pred eEEEeeCCCeEEEECCCcc----ccCCCCCCCCCCceEEEEEEEecCcce
Confidence 4778899999999999865 55332 457899999998866544
No 4
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.97 E-value=1.6 Score=39.06 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=30.2
Q ss_pred cEEEEecCCcEEEeccccccccccccCC--CCCCeEEEEccccc
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISS--IRKQRILVTFTKSQ 274 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk--~r~~RISLTFRkV~ 274 (486)
.+.+.++.||+|||.+.+- |+-.+ ....|++|++|-+.
T Consensus 203 ~v~~~~k~Gdvli~~~~l~----Hgs~~N~S~~~R~~l~~~y~~ 242 (296)
T d2a1xa1 203 RVHLVMEKGDTVFFHPLLI----HGSGQNKTQGFRKAISCHFAS 242 (296)
T ss_dssp CEEECBCTTCEEEECTTCC----EEECCBCSSSCEEEEEEEEEE
T ss_pred eEEeeecCCcEEEECCCee----ecCCCCCCcCceEEEEEEEEC
Confidence 5778899999999998754 66554 56799999998754
No 5
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}
Probab=33.15 E-value=1.3e+02 Score=25.87 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=23.3
Q ss_pred cEEEEecCCcEEEeccccccccccccCCCCCCeE--EEEcc
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISSIRKQRI--LVTFT 271 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~RI--SLTFR 271 (486)
...+.|.+||+|.| +.. |-|.+... +..| |||||
T Consensus 198 ~~~~~L~pGDvLYi--P~g--w~H~v~s~-~~sis~sv~f~ 233 (319)
T d1vrba1 198 AEIVNLTPGTMLYL--PRG--LWHSTKSD-QATLALNITFG 233 (319)
T ss_dssp SEEEEECTTCEEEE--CTT--CEEEEECS-SCEEEEEEEEC
T ss_pred cEEEEECCCCEEEe--CCC--ceEEeEec-CCeEEEEEEec
Confidence 57899999999999 333 66766653 3454 45565
No 6
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}
Probab=25.39 E-value=47 Score=29.65 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=31.0
Q ss_pred cEEEEecCCcEEEeccccccccccccCC---------CCCCeEEEEccc
Q 011406 233 TLRLSVAPGSLLVMQGKSADIAKHAISS---------IRKQRILVTFTK 272 (486)
Q Consensus 233 ~~~L~L~~GSLLVMsGeAR~~WkHgIPk---------~r~~RISLTFRk 272 (486)
=+.|.-.+|+++|.-|++=..|..+.-+ ....|+||.|--
T Consensus 202 Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~ 250 (307)
T d1w9ya1 202 WIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFY 250 (307)
T ss_dssp EEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEE
T ss_pred EEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEe
Confidence 3677778999999999998888766554 345789988864
No 7
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.32 E-value=36 Score=30.80 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=30.9
Q ss_pred EEEEecCCcEEEeccccccccccccCC---------CCCCeEEEEcccc
Q 011406 234 LRLSVAPGSLLVMQGKSADIAKHAISS---------IRKQRILVTFTKS 273 (486)
Q Consensus 234 ~~L~L~~GSLLVMsGeAR~~WkHgIPk---------~r~~RISLTFRkV 273 (486)
+.|.-.+|+++|.-|++=..|..+.-+ ....|+||.|--.
T Consensus 257 ~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~ 305 (349)
T d1gp6a_ 257 VTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 305 (349)
T ss_dssp EECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEE
T ss_pred EEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEec
Confidence 667778999999999998889655444 3457999988643
No 8
>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}
Probab=15.61 E-value=1.5e+02 Score=24.89 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=41.2
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeEeeeccCCCCCCC-CcccEEEEecCCcEEEeccccccccccccC
Q 011406 182 CIVDVFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHPGD-YRGTLRLSVAPGSLLVMQGKSADIAKHAIS 259 (486)
Q Consensus 182 cLIN~Y~pGdgI~pHvD~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~~g~-~r~~~~L~L~~GSLLVMsGeAR~~WkHgIP 259 (486)
+++..+.+|+...+| ||...+ ++. .| +.-..++.+... .+. ........|..|+...|..... .-|.|.
T Consensus 70 i~~i~W~pG~~tpiH-dH~~w~--~~~-vl~G~l~e~~y~~~~---~~~~~~~~~~~~l~~G~v~~~~~~~~--~IH~v~ 140 (192)
T d2gm6a1 70 IVSFVWGPGQRTPIH-DHTVWG--LIG-MLRGAEYSQPFVLDG---SGRPVLHGEPTRLEPGHVEAVSPTVG--DIHRVH 140 (192)
T ss_dssp EEEEEECTTCBCCSB-CCSSCE--EEE-EEESCEEEEEEEECT---TSCEEECSCCEEECTTCEEEEBTTTB--CCEEEE
T ss_pred EEEEecCCCCCCCCC-CCCCce--EEE-EEcCeEEEEEeeeCC---CCCcccccceEEecCCCEEEECCCCC--ceeEEe
Confidence 445568999999999 554332 332 23 333333333211 111 1112334578888777665432 579998
Q ss_pred CCCCCe--EEE
Q 011406 260 SIRKQR--ILV 268 (486)
Q Consensus 260 k~r~~R--ISL 268 (486)
...+.+ |||
T Consensus 141 N~~~~~~avSL 151 (192)
T d2gm6a1 141 NAYDDRVSISI 151 (192)
T ss_dssp ESCSSSCEEEE
T ss_pred cCCCCccEEEE
Confidence 644443 555
No 9
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.66 E-value=30 Score=25.54 Aligned_cols=15 Identities=60% Similarity=1.174 Sum_probs=9.5
Q ss_pred CCCCCCceeeeCCCCC
Q 011406 384 RLPVPGTGVFLPPPGS 399 (486)
Q Consensus 384 r~p~~gtgvflp~~~~ 399 (486)
.|||-||=.|+| ||-
T Consensus 63 qlpvkgtwafip-pge 77 (82)
T d1zela1 63 QLPVKGTWAFIP-PGE 77 (82)
T ss_dssp ECSSTTEEEECC-TTC
T ss_pred ecccCceEEeeC-Ccc
Confidence 466677777777 453
No 10
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}
Probab=13.27 E-value=1.4e+02 Score=22.31 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=39.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCEEEEEc-CceeeEeeeccCCCCCCCCcccEEEEecCCcEEEeccccccccccccCCCCCC
Q 011406 186 VFNEGDHSQPHISPSWFGRPVCILFL-TECDMTFGRMIGIDHPGDYRGTLRLSVAPGSLLVMQGKSADIAKHAISSIRKQ 264 (486)
Q Consensus 186 ~Y~pGdgI~pHvD~p~fg~PIvsLSL-S~cvM~Fgr~~~~~~~g~~r~~~~L~L~~GSLLVMsGeAR~~WkHgIPk~r~~ 264 (486)
.+.+|+.+.+|.- + +...+ +-| +...|..+ -....|..|+++++-.... |++.....-
T Consensus 43 ~~~~G~~~~~H~h-~-~~~~~--~vl~G~~~~~~~-------------~~~~~l~~Gd~~~ip~~~~----H~~~a~~~~ 101 (112)
T d1yhfa1 43 SLDKGQEIGRHSS-P-GDAMV--TILSGLAEITID-------------QETYRVAEGQTIVMPAGIP----HALYAVEAF 101 (112)
T ss_dssp EECTTCEEEEECC-S-SEEEE--EEEESEEEEEET-------------TEEEEEETTCEEEECTTSC----EEEEESSCE
T ss_pred EECCCCCcceEEC-C-CCEEE--EEEeCEEEEEEc-------------cEEEEecCCEEEEcCCCCe----EEeEECCCc
Confidence 3589999999963 1 22222 234 44455442 1347889999999987765 666665554
Q ss_pred eEEEEc
Q 011406 265 RILVTF 270 (486)
Q Consensus 265 RISLTF 270 (486)
++-++.
T Consensus 102 ~~l~~v 107 (112)
T d1yhfa1 102 QMLLVV 107 (112)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554443
Done!