BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011407
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 220/392 (56%), Positives = 295/392 (75%), Gaps = 3/392 (0%)
Query: 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIR 145
+++E A+ PE DW+ +RR IH+NPEL ++E ETS+L+R+EL+ + I Y+YP+A TG+
Sbjct: 16 KLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVI 75
Query: 146 AWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSR 205
++GTG PPFVALRADMDALPIQE VEWE+KSK+AGKMHACGHD HV ML+GAAKIL
Sbjct: 76 GYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEH 135
Query: 206 EHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 265
H L+GTV+LIFQPAEE +GAK+M +GAL++VEAIF +H+S P G SR G LA
Sbjct: 136 RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLA 195
Query: 266 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGG 325
G G F AVI+GK G AA P ++DPV+AAS+ V+SLQ LVSRE +PLDS+VV+V+ NGG
Sbjct: 196 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGG 255
Query: 326 DHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPP 385
+ ++IPD++ IGGTLRAF T F QL QR++EVI +QA V RC+A+V+ G PP
Sbjct: 256 NAFNVIPDSITIGGTLRAF--TGFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPP 313
Query: 386 TVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSI 445
TVN++D+Y+ KKV DLLG + P+MG+EDFS+++E +P F +G+++ET G
Sbjct: 314 TVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDETNGYA 373
Query: 446 HTGHSPYFMIDEDVLPVGAAVHATIAERFLNE 477
+ HSP + I+EDVLP GAA+HA++A ++L E
Sbjct: 374 -SSHSPLYRINEDVLPYGAAIHASMAVQYLKE 404
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 194/376 (51%), Gaps = 17/376 (4%)
Query: 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVA 157
L + RR +H++PEL+FQE ET++ +R L+ +I P KTG+ A + G P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIF 217
+RAD+DALPIQE + SKV G HACGHD H A +IG A +L R LKGTV IF
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 218 QPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK 277
QPAEE GA++++ G L V AIF H + P G IG + GPL A F VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 278 KGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVI 337
G A+ P+ S+DP+ AA + LQ +VSR + L + VVS+T G ++IPD
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 338 GGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVK 397
GT+R F + + + V A + A +F Y P+V ++ + +
Sbjct: 274 EGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQAEFKWFP-----YLPSVQNDGTFLNAA 328
Query: 398 KVAIDLLGPMNYRVVPPMM--GAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMI 455
A LG Y+ V G EDF+ Y E +P F + G H P F +
Sbjct: 329 SEAAARLG---YQTVHAEQSPGGEDFALYQEKIPGFFVWXGTN-----GTEEWHHPAFTL 380
Query: 456 DEDVLPVGAAVHATIA 471
DE+ L V + A +A
Sbjct: 381 DEEALTVASQYFAELA 396
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 205 bits (521), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 197/376 (52%), Gaps = 7/376 (1%)
Query: 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRAD 161
+RR +HQ+PEL+F E ET++ + ++ + + GI+ + +G P +A+RAD
Sbjct: 19 IRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRAD 78
Query: 162 MDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221
DALPI E + S+ G MHACGHDAH A ++ A+ L + G V++I QPAE
Sbjct: 79 FDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAE 138
Query: 222 EAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGG 280
E GAK M+ +G L+ V+ + VHV TG + RPG + G FF + GK G
Sbjct: 139 EVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGH 198
Query: 281 AANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVVSVTYFNGGDHLDMIPDAVVIGGT 340
++PH + D ++A S V +LQ +VSR +P ++ VV++ F+G ++I D V I G
Sbjct: 199 GSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGD 258
Query: 341 LRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVA 400
+R ++ + + + I+ + ++ + T+++ D YP ND + E+V K
Sbjct: 259 VRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD----YPALYNDPEFTEYVAKTL 314
Query: 401 IDLLGPMNYRVVPPMMGAEDFSFYSEVVPAAFYYIGIKNETLGSIHTGHSPYFMIDEDVL 460
+ + P +EDF++Y++ P+AF Y G E G I+ H P F I E L
Sbjct: 315 KEANLDFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAVEN-GEIYPHHHPKFNISEKSL 373
Query: 461 PVGAAVHATIAERFLN 476
+ A T+ +L
Sbjct: 374 LISAEAVGTVVLDYLK 389
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 143 GIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAM 194
G+ A + TG P P +A R D DAL + E + ++ S AG HACGHD H A+
Sbjct: 98 GVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAI 157
Query: 195 LIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTG 254
+G A +LK L G + LIFQPAEE GA+ +A G ++DV+ A+H+ P G
Sbjct: 158 GLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAG 217
Query: 255 VI 256
+
Sbjct: 218 TV 219
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 147/386 (38%), Gaps = 65/386 (16%)
Query: 91 ARRPETVDWLKS-------VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--K 141
+ + +D++++ + IH+ PEL +E SR L L + + +A
Sbjct: 2 GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHA 61
Query: 142 TGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAK 200
TG A +G P + A+ DALP G HACGH+ +IG A
Sbjct: 62 TGFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHN-----IIGTAS 102
Query: 201 I-----LKSREHLLKGTVILIFQPAEEAG-NGAKR--MMADGALEDVEAIFAVHVSHEHP 252
+ LK + G V+++ PAEE G NG+ + + G ++ ++ +H +E
Sbjct: 103 VLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIHPGNE-T 161
Query: 253 TGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVIS-LQGLVSREANP 311
I + +L F+ G +A+ + D L A A IS G+ +
Sbjct: 162 YKTIDTLAVDVLD-VKFY--------GKSAHASENADEALNALDAXISYFNGVAQLRQHI 212
Query: 312 LDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVIVEQARVFRCSA 371
Q V +GG ++IPD RA + L +++ ++ A C
Sbjct: 213 KKDQRVHGVILDGGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCDY 272
Query: 372 TVDFFDKGNTVYPPTVNDEDMY----EHVKKVAIDLLGPMNYRVVPPMMGAEDFSFYSEV 427
G + T +D++ E V + ID Y G+ D S V
Sbjct: 273 EFGPIQNGVNEFIKTPKLDDLFAKYAEEVGEAVID--DDFGY-------GSTDTGNVSHV 323
Query: 428 VPAAFYYIGIKNETLGSIHTGHSPYF 453
VP +I I + L GH+ F
Sbjct: 324 VPTIHPHIKIGSRNL----VGHTHRF 345
>pdb|2PCS|A Chain A, Crystal Structure Of Conserved Protein From Geobacillus
Kaustophilus
Length = 162
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 149 GTGGPPFVALRADMDALPIQE---AVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKS 204
G GGP FV +D PI + + + Y ++V GK+ A G ML G AK+L S
Sbjct: 82 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQ----RMLGGVAKLLIS 136
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 359 VIVEQARVFRCSATVDFFDKGNTVYPPTVNDEDMYEHVKKVAIDLLGPMNYRVVPPMMGA 418
V+ + V C A F+ KGN VY P ++ + +++ I LL +Y++V
Sbjct: 164 VLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASL 223
Query: 419 EDFSFYSEVV 428
E+ E+V
Sbjct: 224 EESLQADEMV 233
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 DINSLGSSTTAATTPALKPDGGSVKNRSSTSRKPYSS 75
D+N LGS T A P L D +KNR R+ YSS
Sbjct: 278 DVN-LGSGTRAVGKPLLNSDTSKIKNRIERLRREYSS 313
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 369
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 KNRSSTSRKPYSSCEVWSRACSKEVMELARRPETVDWLKSVRRT-IHQNPE 112
+NR ST R+ Y E W A KE E R E ++ L S++R H PE
Sbjct: 95 RNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPE 145
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 273 VISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN----PLDSQVVSVTYFNGGD-H 327
+ GK+G A PH +++PV + A++ L V E N P Q+ ++ NGG
Sbjct: 190 TVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNI---NGGTGA 246
Query: 328 LDMIPDAVVIGGTLRAFSNTSFYQLLQRIEEVI 360
++IP + + R + ++ L QR+ ++
Sbjct: 247 TNVIPGELNVKFNFRFSTESTEAGLKQRVHAIL 279
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 193 AMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEH 251
A+++ K+LK GT+ ++F EE G+ G++ ++ + EA A +V
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGA-ANPHRSVDPVLAASAAVISLQGLVSREAN 310
PT + +G + I+GK A A P V+ ++ AS V+ + + N
Sbjct: 179 PTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKAKN 238
Query: 311 PLDSQVVSVTYFNGGDHLDMIPDAVVIGGTLRAFSNTSFYQLLQRIEE 358
+ T G+ ++IP + + +R N F ++ +EE
Sbjct: 239 LR----FNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEE 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,818,926
Number of Sequences: 62578
Number of extensions: 614418
Number of successful extensions: 1355
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 15
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)