Query 011408
Match_columns 486
No_of_seqs 303 out of 1985
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 01:01:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1872 Ubiquitin-specific pro 100.0 9.3E-76 2E-80 554.2 20.8 462 3-484 5-471 (473)
2 cd02657 Peptidase_C19A A subfa 100.0 1.8E-64 4E-69 490.3 30.7 300 105-480 1-305 (305)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 2.2E-63 4.7E-68 480.1 21.7 297 98-482 103-410 (545)
4 cd02668 Peptidase_C19L A subfa 100.0 8.1E-62 1.8E-66 474.3 29.0 297 105-480 1-324 (324)
5 cd02663 Peptidase_C19G A subfa 100.0 1.3E-61 2.8E-66 467.7 28.3 277 105-480 1-300 (300)
6 cd02664 Peptidase_C19H A subfa 100.0 3.5E-61 7.7E-66 469.4 28.3 299 105-480 1-327 (327)
7 cd02660 Peptidase_C19D A subfa 100.0 2.1E-59 4.5E-64 459.8 28.7 303 104-480 1-328 (328)
8 cd02671 Peptidase_C19O A subfa 100.0 6.1E-59 1.3E-63 450.6 30.0 286 97-480 18-332 (332)
9 cd02659 peptidase_C19C A subfa 100.0 1.1E-58 2.4E-63 455.8 30.1 311 102-483 1-333 (334)
10 cd02658 Peptidase_C19B A subfa 100.0 3.4E-58 7.5E-63 447.4 27.8 279 105-480 1-311 (311)
11 cd02661 Peptidase_C19E A subfa 100.0 7.6E-58 1.6E-62 444.6 25.8 290 103-480 1-304 (304)
12 cd02667 Peptidase_C19K A subfa 100.0 2.4E-57 5.2E-62 433.1 23.0 249 105-480 1-279 (279)
13 cd02669 Peptidase_C19M A subfa 100.0 1.4E-56 3.1E-61 451.5 27.6 290 101-480 117-440 (440)
14 COG5560 UBP12 Ubiquitin C-term 100.0 1.1E-57 2.4E-62 440.8 15.9 384 11-482 157-822 (823)
15 KOG1866 Ubiquitin carboxyl-ter 100.0 3.7E-54 8.1E-59 422.5 5.8 320 101-483 93-435 (944)
16 cd02662 Peptidase_C19F A subfa 100.0 1.2E-51 2.7E-56 384.4 21.9 212 105-480 1-240 (240)
17 COG5533 UBP5 Ubiquitin C-termi 100.0 2.6E-51 5.7E-56 365.4 20.5 307 98-482 66-414 (415)
18 KOG0944 Ubiquitin-specific pro 100.0 3E-51 6.5E-56 399.6 19.5 359 101-483 305-763 (763)
19 cd02666 Peptidase_C19J A subfa 100.0 3.2E-51 7E-56 395.5 18.8 290 103-480 1-343 (343)
20 cd02665 Peptidase_C19I A subfa 100.0 3.2E-49 7E-54 357.7 19.5 199 195-480 22-228 (228)
21 PF00443 UCH: Ubiquitin carbox 100.0 4E-48 8.6E-53 369.1 23.1 254 103-479 1-269 (269)
22 COG5077 Ubiquitin carboxyl-ter 100.0 8.6E-50 1.9E-54 392.4 8.8 304 98-483 188-512 (1089)
23 cd02674 Peptidase_C19R A subfa 100.0 5.7E-47 1.2E-51 352.8 18.4 218 105-480 1-230 (230)
24 cd02673 Peptidase_C19Q A subfa 100.0 2.3E-46 5.1E-51 346.3 20.6 233 106-480 2-245 (245)
25 KOG1868 Ubiquitin C-terminal h 100.0 2.6E-47 5.6E-52 386.2 12.6 303 100-485 298-649 (653)
26 KOG1867 Ubiquitin-specific pro 100.0 1.3E-44 2.9E-49 360.8 17.5 302 102-483 160-485 (492)
27 COG5207 UBP14 Isopeptidase T [ 100.0 6.3E-44 1.4E-48 337.2 19.2 362 101-481 301-748 (749)
28 cd02257 Peptidase_C19 Peptidas 100.0 1.6E-42 3.4E-47 327.0 22.1 242 105-480 1-255 (255)
29 KOG4598 Putative ubiquitin-spe 100.0 1.3E-43 2.8E-48 345.4 5.4 331 100-483 84-442 (1203)
30 KOG1873 Ubiquitin-specific pro 100.0 3E-42 6.6E-47 339.9 6.7 152 102-259 204-399 (877)
31 KOG1863 Ubiquitin carboxyl-ter 100.0 1.1E-40 2.5E-45 364.8 15.2 311 93-483 160-486 (1093)
32 KOG1870 Ubiquitin C-terminal h 100.0 3.1E-39 6.8E-44 345.2 18.1 382 16-483 133-842 (842)
33 cd02672 Peptidase_C19P A subfa 100.0 4.1E-38 8.9E-43 295.3 21.3 235 102-480 14-268 (268)
34 cd02670 Peptidase_C19N A subfa 100.0 5E-37 1.1E-41 280.6 15.9 199 195-480 23-241 (241)
35 PF13423 UCH_1: Ubiquitin carb 100.0 1.7E-35 3.6E-40 284.9 22.0 276 104-454 1-295 (295)
36 KOG1864 Ubiquitin-specific pro 100.0 4.7E-33 1E-37 282.1 15.1 304 101-479 230-573 (587)
37 KOG1871 Ubiquitin-specific pro 100.0 8.9E-32 1.9E-36 248.8 12.9 310 101-483 26-420 (420)
38 KOG2026 Spindle pole body prot 99.9 1.8E-24 4E-29 199.5 14.2 287 101-482 132-441 (442)
39 KOG1275 PAB-dependent poly(A) 99.9 1.2E-21 2.6E-26 198.0 15.0 318 102-479 498-860 (1118)
40 cd01813 UBP_N UBP ubiquitin pr 99.8 3.4E-18 7.5E-23 126.9 8.3 71 2-73 1-74 (74)
41 cd01812 BAG1_N Ubiquitin-like 99.5 2.6E-14 5.5E-19 106.4 8.1 70 2-72 1-70 (71)
42 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 1.5E-13 3.4E-18 101.3 8.3 69 1-70 1-70 (73)
43 cd01807 GDX_N ubiquitin-like d 99.4 2.1E-12 4.6E-17 96.5 7.6 71 2-73 1-72 (74)
44 cd01794 DC_UbP_C dendritic cel 99.3 2.8E-12 6.2E-17 94.0 6.6 66 5-71 2-68 (70)
45 cd01809 Scythe_N Ubiquitin-lik 99.3 5E-12 1.1E-16 94.3 7.6 69 2-71 1-70 (72)
46 cd01804 midnolin_N Ubiquitin-l 99.3 6.9E-12 1.5E-16 94.4 8.3 71 2-74 2-73 (78)
47 cd01793 Fubi Fubi ubiquitin-li 99.3 5.6E-12 1.2E-16 94.2 7.4 69 2-72 1-69 (74)
48 cd01790 Herp_N Homocysteine-re 99.3 5.8E-12 1.3E-16 93.2 6.9 71 1-72 1-78 (79)
49 cd01805 RAD23_N Ubiquitin-like 99.3 8.6E-12 1.9E-16 94.3 8.1 72 2-74 1-75 (77)
50 cd01800 SF3a120_C Ubiquitin-li 99.3 7.2E-12 1.6E-16 94.0 6.6 65 8-73 5-69 (76)
51 cd01797 NIRF_N amino-terminal 99.3 9.1E-12 2E-16 93.5 7.1 72 2-74 1-75 (78)
52 cd01792 ISG15_repeat1 ISG15 ub 99.3 1.7E-11 3.6E-16 93.0 7.7 72 2-74 3-77 (80)
53 cd01810 ISG15_repeat2 ISG15 ub 99.3 1.5E-11 3.3E-16 91.8 6.8 68 4-72 1-69 (74)
54 PF00240 ubiquitin: Ubiquitin 99.2 2.7E-11 5.8E-16 89.5 6.9 64 9-73 4-67 (69)
55 cd01796 DDI1_N DNA damage indu 99.2 2.6E-11 5.7E-16 89.5 6.8 67 3-70 2-69 (71)
56 cd01798 parkin_N amino-termina 99.2 2.7E-11 5.9E-16 89.5 6.8 67 5-72 2-69 (70)
57 cd01802 AN1_N ubiquitin-like d 99.2 4.6E-11 9.9E-16 94.5 8.0 70 2-72 28-98 (103)
58 PTZ00044 ubiquitin; Provisiona 99.2 4.5E-11 9.7E-16 90.0 7.5 70 2-72 1-71 (76)
59 cd01808 hPLIC_N Ubiquitin-like 99.2 3.9E-11 8.4E-16 88.9 6.9 69 2-71 1-69 (71)
60 cd01803 Ubiquitin Ubiquitin. U 99.2 8.8E-11 1.9E-15 88.5 7.4 70 2-72 1-71 (76)
61 cd01806 Nedd8 Nebb8-like ubiq 99.2 1.6E-10 3.4E-15 87.2 8.0 70 2-72 1-71 (76)
62 smart00213 UBQ Ubiquitin homol 99.1 1.3E-10 2.9E-15 84.4 6.7 64 2-66 1-64 (64)
63 KOG0005 Ubiquitin-like protein 99.1 1.6E-10 3.5E-15 77.1 4.4 68 3-71 2-70 (70)
64 KOG0010 Ubiquitin-like protein 99.1 1E-09 2.2E-14 106.7 10.7 72 2-74 16-87 (493)
65 TIGR00601 rad23 UV excision re 99.0 8.6E-10 1.9E-14 107.5 8.6 73 2-75 1-77 (378)
66 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 1.2E-09 2.5E-14 79.7 5.1 54 19-72 18-74 (75)
67 PF15499 Peptidase_C98: Ubiqui 98.9 2.7E-09 5.9E-14 95.0 7.9 221 107-453 6-252 (275)
68 cd01799 Hoil1_N Ubiquitin-like 98.9 3.7E-09 7.9E-14 78.5 6.2 60 9-70 11-72 (75)
69 cd01769 UBL Ubiquitin-like dom 98.9 7E-09 1.5E-13 76.4 7.7 66 6-72 2-68 (69)
70 cd01795 USP48_C USP ubiquitin- 98.9 4.5E-09 9.7E-14 79.1 5.9 61 11-72 15-76 (107)
71 KOG0011 Nucleotide excision re 98.8 1.1E-08 2.3E-13 94.5 6.4 74 2-76 1-77 (340)
72 KOG0003 Ubiquitin/60s ribosoma 98.7 6.2E-09 1.4E-13 78.7 1.5 69 1-70 1-69 (128)
73 cd01789 Alp11_N Ubiquitin-like 98.7 2E-07 4.3E-12 71.1 9.5 71 2-73 2-81 (84)
74 cd01763 Sumo Small ubiquitin-r 98.7 1.2E-07 2.5E-12 73.1 8.3 69 2-71 12-81 (87)
75 PF14560 Ubiquitin_2: Ubiquiti 98.6 1E-07 2.2E-12 73.5 6.8 73 1-74 1-84 (87)
76 KOG0004 Ubiquitin/40S ribosoma 98.4 3.1E-07 6.7E-12 75.5 3.4 115 3-123 2-118 (156)
77 cd01814 NTGP5 Ubiquitin-like N 98.3 8.7E-07 1.9E-11 69.3 5.6 61 11-72 16-89 (113)
78 PF11976 Rad60-SLD: Ubiquitin- 98.3 2.5E-06 5.3E-11 63.3 7.4 68 2-70 1-70 (72)
79 cd01801 Tsc13_N Ubiquitin-like 98.1 7.1E-06 1.5E-10 61.6 6.6 68 3-70 2-74 (77)
80 cd01788 ElonginB Ubiquitin-lik 98.1 9.2E-06 2E-10 63.2 6.5 60 4-64 5-64 (119)
81 KOG4248 Ubiquitin-like protein 98.0 1.2E-05 2.6E-10 85.0 7.5 70 2-73 3-73 (1143)
82 PLN02560 enoyl-CoA reductase 98.0 2.5E-05 5.5E-10 74.6 7.9 67 3-70 2-80 (308)
83 PF14836 Ubiquitin_3: Ubiquiti 97.8 0.00019 4.1E-09 54.0 8.2 68 12-82 15-88 (88)
84 cd00196 UBQ Ubiquitin-like pro 97.6 0.00029 6.3E-09 50.1 7.0 62 9-71 6-67 (69)
85 KOG1887 Ubiquitin carboxyl-ter 97.5 1.3E-05 2.7E-10 83.1 -1.8 207 194-482 548-790 (806)
86 KOG1864 Ubiquitin-specific pro 97.5 0.00026 5.7E-09 73.3 7.6 109 106-216 34-155 (587)
87 KOG3493 Ubiquitin-like protein 97.4 7.4E-05 1.6E-09 51.3 1.8 68 1-69 1-69 (73)
88 cd01811 OASL_repeat1 2'-5' oli 97.4 0.001 2.2E-08 47.5 7.0 71 2-74 1-77 (80)
89 KOG0001 Ubiquitin and ubiquiti 97.3 0.0013 2.8E-08 48.4 8.0 65 8-73 7-71 (75)
90 KOG3556 Familial cylindromatos 97.3 6.5E-05 1.4E-09 73.5 0.7 186 100-342 365-557 (724)
91 PF11543 UN_NPL4: Nuclear pore 97.3 0.001 2.2E-08 50.0 6.5 67 3-70 6-77 (80)
92 PF13881 Rad60-SLD_2: Ubiquiti 97.0 0.0031 6.8E-08 50.5 7.7 65 2-67 3-76 (111)
93 PF11470 TUG-UBL1: GLUT4 regul 96.9 0.0025 5.4E-08 45.5 5.1 65 5-70 1-65 (65)
94 KOG4495 RNA polymerase II tran 96.8 0.0017 3.7E-08 48.6 4.2 60 4-64 5-66 (110)
95 KOG0006 E3 ubiquitin-protein l 96.3 0.0079 1.7E-07 55.6 5.9 66 4-70 3-74 (446)
96 PF08817 YukD: WXG100 protein 96.0 0.015 3.2E-07 43.7 4.9 68 2-70 3-78 (79)
97 KOG3206 Alpha-tubulin folding 95.9 0.036 7.9E-07 48.2 7.3 74 1-75 1-83 (234)
98 COG5417 Uncharacterized small 94.8 0.21 4.5E-06 35.9 7.0 61 8-69 14-79 (81)
99 smart00666 PB1 PB1 domain. Pho 94.4 0.2 4.3E-06 37.7 6.9 46 1-47 1-46 (81)
100 PF05408 Peptidase_C28: Foot-a 94.1 0.02 4.4E-07 49.0 1.0 36 420-460 130-165 (193)
101 PF00789 UBX: UBX domain; Int 93.8 0.32 6.9E-06 36.7 7.0 68 2-70 7-80 (82)
102 PF10302 DUF2407: DUF2407 ubiq 93.7 0.18 4E-06 39.3 5.5 56 4-60 3-64 (97)
103 smart00166 UBX Domain present 93.6 0.58 1.2E-05 35.1 8.0 68 2-70 5-78 (80)
104 cd06406 PB1_P67 A PB1 domain i 93.6 0.34 7.4E-06 35.9 6.4 44 3-48 4-47 (80)
105 cd06407 PB1_NLP A PB1 domain i 92.1 0.71 1.5E-05 34.8 6.5 44 2-46 1-45 (82)
106 PF08715 Viral_protease: Papai 91.8 0.3 6.5E-06 46.9 5.3 98 101-246 100-198 (320)
107 KOG1769 Ubiquitin-like protein 91.7 1.9 4.2E-05 33.2 8.5 71 2-73 21-92 (99)
108 cd01767 UBX UBX (ubiquitin reg 91.2 1.9 4.1E-05 32.0 8.1 66 2-69 3-74 (77)
109 cd06408 PB1_NoxR The PB1 domai 91.1 1.5 3.3E-05 33.1 7.3 44 2-47 3-46 (86)
110 KOG1639 Steroid reductase requ 90.6 0.63 1.4E-05 42.1 5.7 68 3-70 2-76 (297)
111 KOG0013 Uncharacterized conser 90.1 0.77 1.7E-05 40.4 5.7 64 10-74 156-219 (231)
112 cd05992 PB1 The PB1 domain is 90.1 0.96 2.1E-05 33.8 5.8 45 2-47 1-46 (81)
113 cd01772 SAKS1_UBX SAKS1-like U 89.9 2.3 5E-05 31.8 7.6 66 3-70 6-77 (79)
114 cd06396 PB1_NBR1 The PB1 domai 89.9 1.6 3.4E-05 32.7 6.4 36 2-38 1-38 (81)
115 cd01773 Faf1_like1_UBX Faf1 ik 89.8 3.4 7.3E-05 31.1 8.2 68 2-71 6-79 (82)
116 PF00564 PB1: PB1 domain; Int 89.6 1.8 4E-05 32.5 7.1 47 1-47 1-47 (84)
117 cd01770 p47_UBX p47-like ubiqu 88.8 3.6 7.9E-05 30.7 7.9 64 2-66 5-73 (79)
118 cd01774 Faf1_like2_UBX Faf1 ik 87.7 5 0.00011 30.5 8.1 67 2-70 5-82 (85)
119 cd06397 PB1_UP1 Uncharacterize 87.0 1.6 3.5E-05 32.2 4.7 44 2-46 1-44 (82)
120 PRK06437 hypothetical protein; 86.8 3.4 7.5E-05 29.7 6.5 57 4-71 5-61 (67)
121 PRK08364 sulfur carrier protei 86.2 3.2 7E-05 30.2 6.1 60 1-70 2-63 (70)
122 cd06398 PB1_Joka2 The PB1 doma 85.8 3.9 8.5E-05 31.5 6.7 45 2-47 1-51 (91)
123 cd01771 Faf1_UBX Faf1 UBX doma 85.5 8.9 0.00019 28.7 8.3 67 2-70 5-77 (80)
124 PF05408 Peptidase_C28: Foot-a 82.3 2.4 5.2E-05 36.7 4.5 23 103-125 33-55 (193)
125 cd06410 PB1_UP2 Uncharacterize 79.9 6.1 0.00013 30.8 5.8 39 6-46 17-56 (97)
126 cd06404 PB1_aPKC PB1 domain is 78.6 6.7 0.00015 29.3 5.3 44 2-46 1-45 (83)
127 PF10790 DUF2604: Protein of U 75.0 11 0.00023 26.4 5.1 63 7-70 2-68 (76)
128 PF15044 CLU_N: Mitochondrial 73.4 8 0.00017 28.6 4.6 55 18-72 1-57 (76)
129 PF13019 Telomere_Sde2: Telome 72.5 11 0.00024 32.2 5.8 43 2-45 1-48 (162)
130 PRK06083 sulfur carrier protei 71.3 21 0.00046 27.0 6.5 63 1-71 16-78 (84)
131 KOG4583 Membrane-associated ER 69.5 1.8 3.9E-05 41.0 0.5 64 3-66 11-78 (391)
132 PRK05659 sulfur carrier protei 65.7 29 0.00062 24.6 6.1 58 5-70 2-59 (66)
133 cd00565 ThiS ThiaminS ubiquiti 63.3 33 0.00072 24.2 6.0 58 6-71 2-59 (65)
134 PRK06488 sulfur carrier protei 62.8 32 0.0007 24.3 5.9 58 5-71 2-59 (65)
135 PF14533 USP7_C2: Ubiquitin-sp 61.7 14 0.00031 33.5 4.8 57 3-60 20-90 (213)
136 PF02099 Josephin: Josephin; 61.1 11 0.00024 32.3 3.7 32 419-456 99-130 (157)
137 PRK05863 sulfur carrier protei 60.6 45 0.00098 23.6 6.3 58 5-71 2-59 (65)
138 PF14353 CpXC: CpXC protein 60.3 16 0.00036 30.0 4.6 48 236-290 1-49 (128)
139 cd01775 CYR1_RA Ubiquitin doma 59.9 39 0.00085 26.2 6.0 45 4-48 5-51 (97)
140 cd01760 RBD Ubiquitin-like dom 59.1 30 0.00065 25.3 5.2 43 5-48 3-46 (72)
141 COG0089 RplW Ribosomal protein 56.9 25 0.00054 27.1 4.6 37 11-48 22-59 (94)
142 PF01473 CW_binding_1: Putativ 56.5 14 0.00031 19.0 2.3 15 437-452 2-16 (19)
143 KOG2982 Uncharacterized conser 56.2 21 0.00046 34.0 4.8 56 16-71 352-415 (418)
144 cd06409 PB1_MUG70 The MUG70 pr 55.7 41 0.00088 25.6 5.5 42 4-46 3-48 (86)
145 TIGR01683 thiS thiamine biosyn 55.4 46 0.001 23.4 5.6 57 7-71 2-58 (64)
146 cd06405 PB1_Mekk2_3 The PB1 do 54.0 34 0.00075 24.9 4.5 38 3-41 2-39 (79)
147 KOG4250 TANK binding protein k 52.7 29 0.00062 36.9 5.7 42 8-50 322-363 (732)
148 PF09379 FERM_N: FERM N-termin 52.7 18 0.00039 26.7 3.3 32 9-41 5-36 (80)
149 cd00754 MoaD Ubiquitin domain 52.7 64 0.0014 23.6 6.3 56 10-71 15-74 (80)
150 cd06411 PB1_p51 The PB1 domain 52.0 36 0.00077 25.3 4.5 36 12-48 8-43 (78)
151 COG5227 SMT3 Ubiquitin-like pr 50.7 70 0.0015 24.3 5.8 65 2-67 25-90 (103)
152 PF00276 Ribosomal_L23: Riboso 47.2 34 0.00073 26.3 4.0 39 11-50 21-60 (91)
153 PRK05738 rplW 50S ribosomal pr 46.4 53 0.0011 25.3 5.0 38 10-48 20-58 (92)
154 PF02017 CIDE-N: CIDE-N domain 45.7 53 0.0011 24.4 4.6 60 9-74 12-73 (78)
155 PLN02799 Molybdopterin synthas 45.0 1E+02 0.0022 22.8 6.4 64 1-70 1-75 (82)
156 COG3478 Predicted nucleic-acid 44.6 20 0.00044 25.2 2.1 33 281-313 6-40 (68)
157 PRK07440 hypothetical protein; 44.5 1.2E+02 0.0025 21.9 6.3 60 3-70 4-63 (70)
158 PRK01777 hypothetical protein; 44.5 1E+02 0.0022 23.9 6.3 60 1-70 3-73 (95)
159 KOG2689 Predicted ubiquitin re 44.5 55 0.0012 30.5 5.5 67 3-70 212-284 (290)
160 cd01776 Rin1_RA Ubiquitin doma 44.3 70 0.0015 23.9 5.0 43 11-54 14-61 (87)
161 PF10748 DUF2531: Protein of u 44.0 28 0.0006 28.8 3.2 34 415-454 34-67 (132)
162 smart00295 B41 Band 4.1 homolo 43.9 54 0.0012 29.1 5.7 37 2-39 4-41 (207)
163 KOG0012 DNA damage inducible p 43.7 71 0.0015 31.1 6.3 72 2-74 3-77 (380)
164 PTZ00380 microtubule-associate 43.6 78 0.0017 25.8 5.7 45 16-60 45-89 (121)
165 cd01766 Ufm1 Urm1-like ubiquit 43.3 1.3E+02 0.0028 21.9 6.6 61 10-70 14-75 (82)
166 TIGR03636 L23_arch archaeal ri 42.5 56 0.0012 24.2 4.4 34 11-45 15-48 (77)
167 PF03671 Ufm1: Ubiquitin fold 42.2 1.3E+02 0.0029 21.8 6.0 61 10-70 14-75 (76)
168 smart00314 RA Ras association 42.2 68 0.0015 24.2 5.2 35 10-45 15-51 (90)
169 PRK07696 sulfur carrier protei 41.8 1.2E+02 0.0027 21.6 6.0 58 5-70 2-60 (67)
170 cd01615 CIDE_N CIDE_N domain, 41.2 70 0.0015 23.8 4.7 52 21-74 20-73 (78)
171 PRK14548 50S ribosomal protein 41.0 59 0.0013 24.6 4.4 34 11-45 22-55 (84)
172 cd01768 RA RA (Ras-associating 39.0 1.2E+02 0.0025 22.7 6.0 35 10-45 12-48 (87)
173 PRK09908 xanthine dehydrogenas 38.7 55 0.0012 28.1 4.3 36 2-39 7-42 (159)
174 PF12754 Blt1: Cell-cycle cont 38.7 10 0.00022 36.0 0.0 56 21-76 103-184 (309)
175 TIGR02958 sec_mycoba_snm4 secr 36.5 2E+02 0.0043 29.6 8.8 69 3-72 4-79 (452)
176 smart00455 RBD Raf-like Ras-bi 36.1 89 0.0019 22.6 4.6 39 9-48 8-46 (70)
177 PF11620 GABP-alpha: GA-bindin 35.7 95 0.0021 23.4 4.6 57 13-70 5-61 (88)
178 CHL00030 rpl23 ribosomal prote 35.5 82 0.0018 24.3 4.5 39 10-49 19-58 (93)
179 PRK11433 aldehyde oxidoreducta 35.4 65 0.0014 29.2 4.5 37 2-39 50-86 (217)
180 KOG1867 Ubiquitin-specific pro 34.8 10 0.00022 39.1 -0.7 31 101-131 75-105 (492)
181 KOG1871 Ubiquitin-specific pro 34.0 20 0.00044 35.1 1.1 38 102-139 177-214 (420)
182 PF00794 PI3K_rbd: PI3-kinase 33.1 1.1E+02 0.0023 24.2 5.1 32 2-34 17-50 (106)
183 PRK09750 hypothetical protein; 32.6 58 0.0013 22.4 2.8 37 415-464 2-38 (64)
184 cd06539 CIDE_N_A CIDE_N domain 32.4 1.2E+02 0.0025 22.6 4.6 52 21-74 20-73 (78)
185 COG2080 CoxS Aerobic-type carb 32.2 79 0.0017 27.0 4.2 38 1-39 1-38 (156)
186 cd00524 SORL Superoxide reduct 32.0 1.3E+02 0.0029 22.6 5.2 33 420-458 17-52 (86)
187 PF10264 Stork_head: Winged he 31.8 1.7E+02 0.0037 21.9 5.4 54 149-211 10-63 (80)
188 PF03412 Peptidase_C39: Peptid 31.7 1.7E+02 0.0038 23.5 6.4 46 431-482 83-129 (131)
189 COG2104 ThiS Sulfur transfer p 31.0 2E+02 0.0044 20.7 6.7 60 3-70 2-61 (68)
190 PRK08053 sulfur carrier protei 31.0 1.9E+02 0.0042 20.4 6.5 59 5-71 2-60 (66)
191 PF04126 Cyclophil_like: Cyclo 30.9 43 0.00093 27.3 2.5 29 2-31 1-29 (120)
192 KOG2757 Mannose-6-phosphate is 30.7 1.3E+02 0.0027 29.5 5.8 53 116-168 147-199 (411)
193 PF12252 SidE: Dot/Icm substra 30.3 50 0.0011 36.8 3.4 29 423-451 53-81 (1439)
194 KOG2561 Adaptor protein NUB1, 30.2 22 0.00047 35.5 0.7 57 16-72 54-110 (568)
195 smart00144 PI3K_rbd PI3-kinase 30.2 1.5E+02 0.0032 23.6 5.4 32 2-34 18-51 (108)
196 KOG2906 RNA polymerase III sub 30.1 69 0.0015 24.7 3.2 67 231-300 16-86 (105)
197 cd05024 S-100A10 S-100A10: A s 30.1 2E+02 0.0042 22.2 5.7 55 153-207 8-76 (91)
198 PF00788 RA: Ras association ( 30.0 1E+02 0.0022 23.1 4.5 33 12-45 18-52 (93)
199 cd02420 Peptidase_C39D A sub-f 29.9 1.6E+02 0.0035 23.5 5.9 41 432-478 83-124 (125)
200 cd05027 S-100B S-100B: S-100B 29.0 1.1E+02 0.0024 23.2 4.3 36 151-186 6-44 (88)
201 PF08715 Viral_protease: Papai 28.7 53 0.0011 31.8 3.0 18 421-440 263-280 (320)
202 smart00266 CAD Domains present 28.3 1.6E+02 0.0034 21.7 4.6 50 21-72 18-69 (74)
203 cd03172 SORL_classII Superoxid 28.1 96 0.0021 24.5 3.9 24 429-458 37-60 (104)
204 cd01787 GRB7_RA RA (RAS-associ 28.0 1.9E+02 0.004 22.0 5.1 55 4-59 5-67 (85)
205 cd01611 GABARAP Ubiquitin doma 27.9 2.4E+02 0.0052 22.6 6.2 45 16-60 45-90 (112)
206 PF14453 ThiS-like: ThiS-like 27.7 2.1E+02 0.0046 19.8 6.0 53 5-71 2-54 (57)
207 PF11164 DUF2948: Protein of u 27.0 2.4E+02 0.0051 23.6 6.1 27 412-439 80-106 (138)
208 PF14533 USP7_C2: Ubiquitin-sp 26.5 60 0.0013 29.4 2.9 32 10-42 132-163 (213)
209 COG0093 RplN Ribosomal protein 25.6 1.1E+02 0.0023 24.7 3.7 33 419-460 58-90 (122)
210 PRK06944 sulfur carrier protei 25.3 2.4E+02 0.0052 19.6 6.7 57 5-70 2-58 (65)
211 PRK11840 bifunctional sulfur c 25.2 2E+02 0.0044 27.9 6.2 58 5-70 2-59 (326)
212 cd02418 Peptidase_C39B A sub-f 24.9 3.7E+02 0.0079 21.6 7.3 53 422-481 79-133 (136)
213 smart00143 PI3K_p85B PI3-kinas 24.0 87 0.0019 23.3 2.7 20 16-35 4-23 (78)
214 KOG2935 Ataxin 3/Josephin [Gen 23.8 11 0.00023 34.4 -2.4 60 420-485 104-164 (315)
215 cd01818 TIAM1_RBD Ubiquitin do 23.7 1.9E+02 0.0042 21.3 4.3 38 9-47 8-45 (77)
216 cd01269 PLX Pollux (PLX) Phosp 23.4 92 0.002 25.4 3.0 24 417-440 83-106 (129)
217 cd01777 SNX27_RA Ubiquitin dom 23.4 1.7E+02 0.0037 22.3 4.2 41 3-44 3-44 (87)
218 PRK12280 rplW 50S ribosomal pr 22.9 1.8E+02 0.0039 24.9 4.8 34 11-45 23-56 (158)
219 cd02425 Peptidase_C39F A sub-f 22.9 2.6E+02 0.0057 22.1 5.9 41 433-479 85-126 (126)
220 cd01817 RGS12_RBD Ubiquitin do 22.8 3.2E+02 0.0068 20.1 6.4 39 9-48 8-46 (73)
221 PF02192 PI3K_p85B: PI3-kinase 22.6 91 0.002 23.2 2.7 20 16-35 4-23 (78)
222 PF13405 EF-hand_6: EF-hand do 22.5 1.3E+02 0.0028 17.3 2.9 25 155-179 2-27 (31)
223 TIGR03193 4hydroxCoAred 4-hydr 22.4 1.5E+02 0.0032 25.2 4.2 34 4-38 2-35 (148)
224 PF00036 EF-hand_1: EF hand; 22.4 1.6E+02 0.0034 17.0 3.1 26 155-180 2-28 (29)
225 PF06688 DUF1187: Protein of u 22.2 82 0.0018 21.8 2.1 34 417-463 1-34 (61)
226 PF03633 Glyco_hydro_65C: Glyc 21.9 1.3E+02 0.0028 20.2 3.2 19 2-21 10-28 (54)
227 PF13499 EF-hand_7: EF-hand do 21.7 2E+02 0.0044 19.8 4.4 49 155-211 2-51 (66)
228 KOG2086 Protein tyrosine phosp 21.4 2.3E+02 0.0049 28.1 5.7 62 3-65 307-373 (380)
229 KOG4842 Protein involved in si 21.1 25 0.00054 32.3 -0.7 60 3-64 5-64 (278)
230 PF14847 Ras_bdg_2: Ras-bindin 20.8 2.1E+02 0.0047 22.6 4.6 35 4-39 3-38 (105)
231 PF12436 USP7_ICP0_bdg: ICP0-b 20.4 1.3E+02 0.0027 28.1 3.8 34 11-45 190-223 (249)
232 PF09855 DUF2082: Nucleic-acid 20.1 90 0.002 22.2 2.1 34 280-313 1-36 (64)
No 1
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-76 Score=554.18 Aligned_cols=462 Identities=43% Similarity=0.690 Sum_probs=406.3
Q ss_pred EEEEEeCCeEEEEEE-eCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccccccCCC
Q 011408 3 TVSVKWQKEVFSNVE-IDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADEIVKAP 81 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~-~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~~~~~p 81 (486)
+|.|||+|+.|+ +. ++.++|+.+||++|..+|||||+|||+|+|||+++||..+..+.||+|.++||||++++.+..|
T Consensus 5 ~v~VKW~gk~y~-v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~~e~p 83 (473)
T KOG1872|consen 5 TVIVKWGGKKYP-VETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEAGLEPP 83 (473)
T ss_pred eEeeeecCcccc-ceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccccccCc
Confidence 599999999999 76 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCchhhhhhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHH
Q 011408 82 EKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFND 161 (486)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 161 (486)
..+..+++++.+.+.....++|+||.|+|||||||+.+|+|..+|+++..+..+......+........+..+++.+|+.
T Consensus 84 ~~~~~~~ed~~e~~~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~ 163 (473)
T KOG1872|consen 84 SLPPTFIEDSAEQFASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRP 163 (473)
T ss_pred ccCCcchhhhhHHHHHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHh
Confidence 99999999999888788889999999999999999999999999999999988775554444333457889999999999
Q ss_pred hcCCCCCcchHHHHHHHHhhCCccccc-CCCCCCCchHHHHHHHHHHHHHHhhccCCCC-CCCccccccceEEEEEEEEe
Q 011408 162 LDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNAS-EIPDTVKALFGIDIVSRVHC 239 (486)
Q Consensus 162 l~~~~~~i~p~~~~~~l~~~~~~f~~~-~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~-~~~~~i~~~F~~~~~~~~~C 239 (486)
|..+ .++.|..+++.+++.+|+|.+. ..+.+.||||.|++..++..++..+...... .....+.++|++++..++.|
T Consensus 164 ~~~~-~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~ 242 (473)
T KOG1872|consen 164 LCEK-GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAPCLEAEAAAGFGAEFSTTMSC 242 (473)
T ss_pred hhcc-CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheeccccccccccchhHHHHHhhccccccceee
Confidence 9988 9999999999999999999874 4567899999999999999999888765322 33455889999999999999
Q ss_pred CCCCCeeee--cCceEEEEEeccCCcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccc
Q 011408 240 QESGEESSE--TESIYALKCHISHEVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRES 317 (486)
Q Consensus 240 ~~c~~~s~~--~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~ 317 (486)
.+-...... .|.|+.|.|.|...++.+..+|..-+.+++.+..+..|++..+.|...|.+||.||+|++.||.|....
T Consensus 243 ~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~ 322 (473)
T KOG1872|consen 243 SEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQKISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKI 322 (473)
T ss_pred ccCcccccccccccccccceEEeeeechhhhhhhhhhhhhhhccCcccCCChHHHHHhHhhcCcccceEEEEEEEecccc
Confidence 888777333 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccc
Q 011408 318 NQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVA 397 (486)
Q Consensus 318 ~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
+...|+.+.|.||..||..++|++++++++.+.|+.+|+++++..+.+...++.+-.... +..+.+
T Consensus 323 ~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~-~~~~~e------------- 388 (473)
T KOG1872|consen 323 MVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERL-KEVPLE------------- 388 (473)
T ss_pred chHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCccc-cccccc-------------
Confidence 999999999999999999999999999999999999999999877776654442221111 111100
Q ss_pred cCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEE
Q 011408 398 SSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYIC 477 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlL 477 (486)
......+...+.++.|.|+|||.|.|++..+|||+||+|...+.|++|||.+|+.+..+++++.+|||+|++||+|
T Consensus 389 ----~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvl 464 (473)
T KOG1872|consen 389 ----GMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVL 464 (473)
T ss_pred ----chhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhhe
Confidence 1111122333447899999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEeeccC
Q 011408 478 MYKARSI 484 (486)
Q Consensus 478 fY~r~~~ 484 (486)
+|..+.+
T Consensus 465 lyk~~~l 471 (473)
T KOG1872|consen 465 LYKARVL 471 (473)
T ss_pred eeccccc
Confidence 9998765
No 2
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.8e-64 Score=490.34 Aligned_cols=300 Identities=58% Similarity=1.028 Sum_probs=268.8
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQ 184 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~ 184 (486)
||.|+||||||||+||+|+++|+||+++++...... .......+++++|+.||..|+.+...++|..|+..++...+.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~l~~~~~~i~p~~~~~~l~~~~~~ 78 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR--GANQSSDNLTNALRDLFDTMDKKQEPVPPIEFLQLLRMAFPQ 78 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc--ccccchhHHHHHHHHHHHHHHhCCCcCCcHHHHHHHHHHCcC
Confidence 899999999999999999999999999998764321 122456799999999999999888899999999999999999
Q ss_pred ccccCC-CCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCC-CeeeecCceEEEEEeccCC
Q 011408 185 FGQLHN-GTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESG-EESSETESIYALKCHISHE 262 (486)
Q Consensus 185 f~~~~~-~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~-~~s~~~e~~~~l~l~i~~~ 262 (486)
|++... +.++||||+||+..||+.|++++... ....+.|.++|+|++.+.++|..|+ ..+.+.|+|+.|+++|+..
T Consensus 79 f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~--~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~ 156 (305)
T cd02657 79 FAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA--GSKGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISIT 156 (305)
T ss_pred cccccCCCCccccCHHHHHHHHHHHHHHHhccc--CCCCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCC
Confidence 975533 56799999999999999999998641 2235679999999999999999999 7899999999999999876
Q ss_pred --cchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccccccC
Q 011408 263 --VNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCS 340 (486)
Q Consensus 263 --~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~ 340 (486)
..+|+++|..++++++...|+.|++...+.++..|.++|++|+|||+||.|+...+...|+...|.||++|||.+|+.
T Consensus 157 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~ 236 (305)
T cd02657 157 TEVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT 236 (305)
T ss_pred cccccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC
Confidence 468999999999998888999999999999999999999999999999999987778899999999999999998875
Q ss_pred hhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEe
Q 011408 341 DDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLV 420 (486)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~ 420 (486)
. +..|+|+
T Consensus 237 ~------------------------------------------------------------------------~~~Y~L~ 244 (305)
T cd02657 237 P------------------------------------------------------------------------SGYYELV 244 (305)
T ss_pred C------------------------------------------------------------------------CCcEEEE
Confidence 2 2579999
Q ss_pred EEEEeecCCCCCCceEEEEEccC-CeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 421 AVLTHKGRSADSGHYVAWVKQES-GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 421 aVv~H~G~~~~~GHY~a~vk~~~-~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
|||+|.|.++++|||+||+|..+ +.|++|||+.|+++++++|....|||.+.+||||||+
T Consensus 245 ~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 245 AVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99999998799999999999644 9999999999999999999998888888999999996
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-63 Score=480.08 Aligned_cols=297 Identities=27% Similarity=0.395 Sum_probs=264.5
Q ss_pred hccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 011408 98 LSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWM 176 (486)
Q Consensus 98 ~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~ 176 (486)
+....++||.|+|||||+||+||||.++|||.++|+...+...+. ....|++|+|+.......... .++.|..|+.
T Consensus 103 ~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~---~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s 179 (545)
T KOG1865|consen 103 RPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH---RAKFCMLCTFQAHITRALHNPGHPISPSQILS 179 (545)
T ss_pred ccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc---ccCeeeehHHHHHHHHHhcCCCCccChHHHHH
Confidence 344578999999999999999999999999999999877554332 467899999998776555544 6999999999
Q ss_pred HHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccC-----CCCCCCccccccceEEEEEEEEeCCCCCeeeecCc
Q 011408 177 LLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSV-----NASEIPDTVKALFGIDIVSRVHCQESGEESSETES 251 (486)
Q Consensus 177 ~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~ 251 (486)
.|+.+...|+ .+.|+||||||.++++.|+..+-.. ...+..+.|+++|+|-++++++|..|.+++.++|+
T Consensus 180 ~L~~I~~~f~-----~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~ 254 (545)
T KOG1865|consen 180 NLRNISAHFG-----RGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEP 254 (545)
T ss_pred hhhhhccccc-----CCchhhHHHHHHHHHHHHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCCccccccc
Confidence 9999998887 8899999999999999999987421 22344677999999999999999999999999999
Q ss_pred eEEEEEeccCCcchHHHHHHhhhh-----hhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEecccccccccccc
Q 011408 252 IYALKCHISHEVNHLHEGLKHGLK-----SELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRK 326 (486)
Q Consensus 252 ~~~l~l~i~~~~~~l~~~l~~~~~-----~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~ 326 (486)
.++|++.|. ...+|.++|++|.. ++..+.|++|+.++.+.|+..|.++|+||+|||+||.. +...||.+.
T Consensus 255 ~~dltvei~-d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~ 329 (545)
T KOG1865|consen 255 YLDLTLEIQ-DASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKP 329 (545)
T ss_pred ccceEEEec-cchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----Ccccccccc
Confidence 999999999 66899999999865 44558999999999999999999999999999999997 567899999
Q ss_pred ccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCC
Q 011408 327 VDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTD 406 (486)
Q Consensus 327 v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
|.||+.|||.+||+.+
T Consensus 330 I~fPE~LDl~PyMS~~---------------------------------------------------------------- 345 (545)
T KOG1865|consen 330 VSFPETLDLQPYMSQP---------------------------------------------------------------- 345 (545)
T ss_pred cCCcccccccccccCC----------------------------------------------------------------
Confidence 9999999999999852
Q ss_pred CCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEeec
Q 011408 407 TDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKAR 482 (486)
Q Consensus 407 ~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~ 482 (486)
...+..|.|+|||+|.|.+..+|||+||||...|.||++||+.|+.++.+.|++ ..||||||.|.
T Consensus 346 ----~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLs-------q~AYmLfY~R~ 410 (545)
T KOG1865|consen 346 ----NEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLS-------QQAYILFYARK 410 (545)
T ss_pred ----CCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceec-------ccceEEEEEee
Confidence 245589999999999999999999999999989999999999999999999998 78999999986
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.1e-62 Score=474.28 Aligned_cols=297 Identities=26% Similarity=0.402 Sum_probs=254.1
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCC---C---CCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHH
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSND---V---DQSSHMLTVATSELFNDLDKSV-KPVAPMQFWML 177 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~---~---~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~ 177 (486)
||.|+||||||||+||+|+++|+||++++.......... + .....+++++|+.||..|+.+. ..++|..|+.+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 899999999999999999999999999987654321100 0 0123689999999999999776 78999999988
Q ss_pred HHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEE
Q 011408 178 LRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKC 257 (486)
Q Consensus 178 l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l 257 (486)
++ |. .++||||+||+..||+.|++++.........+.+.++|.|++..+++|..|+..+.+.|+|+.|++
T Consensus 81 l~-----~~-----~~~QqDa~EFl~~lLd~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l 150 (324)
T cd02668 81 LG-----LD-----TGQQQDAQEFSKLFLSLLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELEL 150 (324)
T ss_pred hC-----CC-----CccccCHHHHHHHHHHHHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEE
Confidence 74 33 668999999999999999999875433344677999999999999999999999999999999999
Q ss_pred eccCCcchHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccce
Q 011408 258 HISHEVNHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLE 332 (486)
Q Consensus 258 ~i~~~~~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~ 332 (486)
+|++. .+|+++|+.++..+. .+.|++|+.+..+.++..|.++|++|+|||+||.|+..++...|++..|.||+.
T Consensus 151 ~i~~~-~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~ 229 (324)
T cd02668 151 QLKGH-KTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEI 229 (324)
T ss_pred Eeccc-CCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCe
Confidence 99864 589999999997542 368999999999999999999999999999999999888888999999999999
Q ss_pred eccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCC
Q 011408 333 LDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETH 412 (486)
Q Consensus 333 Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (486)
|||.+|+... ..
T Consensus 230 Ldl~~~~~~~--------------------------------------------------------------------~~ 241 (324)
T cd02668 230 LDMGEYLAES--------------------------------------------------------------------DE 241 (324)
T ss_pred Eechhhcccc--------------------------------------------------------------------cC
Confidence 9999998542 13
Q ss_pred CCeeEEEeEEEEeecCCCCCCceEEEEEcc-CCeEEEeeCCCceecChhhhhhccCCC--------------CCceEEEE
Q 011408 413 LTGIYDLVAVLTHKGRSADSGHYVAWVKQE-SGKWIEYDDDNPLPQREEDITKLSGGG--------------DWHMAYIC 477 (486)
Q Consensus 413 ~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~-~~~W~~~nD~~V~~~~~~~v~~~~~g~--------------~~~~aYlL 477 (486)
....|+|+|||+|.|.++++|||+||+|+. +++||+|||+.|++++++.|....+++ .+.+||||
T Consensus 242 ~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 321 (324)
T cd02668 242 GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYML 321 (324)
T ss_pred CCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEE
Confidence 346899999999999879999999999973 589999999999999999986644422 25799999
Q ss_pred EEe
Q 011408 478 MYK 480 (486)
Q Consensus 478 fY~ 480 (486)
||+
T Consensus 322 ~y~ 324 (324)
T cd02668 322 VYK 324 (324)
T ss_pred EeC
Confidence 996
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-61 Score=467.70 Aligned_cols=277 Identities=27% Similarity=0.458 Sum_probs=243.7
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC---CCcchHHHHHHHHhh
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV---KPVAPMQFWMLLRKK 181 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~i~p~~~~~~l~~~ 181 (486)
||.|+||||||||+||+|++ .+++++|+.||..|+.+. ..++|..|+.+++..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~ 56 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRE 56 (300)
T ss_pred CccCCCcceehhHHHHHhhh------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhh
Confidence 99999999999999999987 478899999999998764 569999999999998
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCC--------------CCCCCccccccceEEEEEEEEeCCCCCeee
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVN--------------ASEIPDTVKALFGIDIVSRVHCQESGEESS 247 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~ 247 (486)
.|.|. .++||||+|||..||+.|++++.... .....+.|.++|+|++.++++|..|++.+.
T Consensus 57 ~~~f~-----~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~ 131 (300)
T cd02663 57 NELFD-----NYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSS 131 (300)
T ss_pred cCCCC-----CCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCcc
Confidence 88887 88999999999999999999986431 122356689999999999999999999999
Q ss_pred ecCceEEEEEeccCCcchHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEecccccccc
Q 011408 248 ETESIYALKCHISHEVNHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAK 322 (486)
Q Consensus 248 ~~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~K 322 (486)
+.|+|+.|+|+|+.. .+|+++|+.|+.++. .+.|++|+....++++..|.++|++|+|||+||.|+...+...|
T Consensus 132 ~~e~f~~Lsl~i~~~-~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~K 210 (300)
T cd02663 132 RDETFLDLSIDVEQN-TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIK 210 (300)
T ss_pred ccceeEEeccCCCCc-CCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCcee
Confidence 999999999999885 589999999987443 36899999999999999999999999999999999987667899
Q ss_pred ccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCC
Q 011408 323 ILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDG 402 (486)
Q Consensus 323 i~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (486)
+...|.||..|+|..+....
T Consensus 211 i~~~v~fp~~L~~~~~~~~~------------------------------------------------------------ 230 (300)
T cd02663 211 LFYRVVFPLELRLFNTTDDA------------------------------------------------------------ 230 (300)
T ss_pred cCceEecCcEEecccccccc------------------------------------------------------------
Confidence 99999999999997654220
Q ss_pred CCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCC-CCceEEEEEEe
Q 011408 403 VTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGG-DWHMAYICMYK 480 (486)
Q Consensus 403 ~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~-~~~~aYlLfY~ 480 (486)
......|+|+|||+|.|.++++|||+||+| .++.|++|||+.|+++++++|....|++ ...+||||||+
T Consensus 231 --------~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k-~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 231 --------ENPDRLYELVAVVVHIGGGPNHGHYVSIVK-SHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred --------CCCCeEEEEEEEEEEecCCCCCCceEEEEE-CCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 133468999999999997799999999999 5999999999999999999998766543 46899999996
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-61 Score=469.35 Aligned_cols=299 Identities=24% Similarity=0.353 Sum_probs=245.4
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHH-HHHHHHhhC
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQ-FWMLLRKKY 182 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~-~~~~l~~~~ 182 (486)
||.|+||||||||+||+|+++|+||+++++..... .....++.++|+.+|..|..+. .++.|.. |+..++ .
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-----~~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~--~ 73 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-----LGDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR--P 73 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-----cCCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--c
Confidence 89999999999999999999999999999876431 1234578899999999887654 6667765 665543 3
Q ss_pred CcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCC
Q 011408 183 PQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHE 262 (486)
Q Consensus 183 ~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~ 262 (486)
+.|. .++||||+||+..||+.|+ +.|.++|+|++.++++|..|+..+.+.|+|..|+|+|+
T Consensus 74 ~~f~-----~~~QqDa~EFl~~lLd~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-- 134 (327)
T cd02664 74 PWFT-----PGSQQDCSEYLRYLLDRLH------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-- 134 (327)
T ss_pred cccC-----CCCcCCHHHHHHHHHHHHH------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC--
Confidence 5565 7799999999999999998 23889999999999999999999999999999999987
Q ss_pred cchHHHHHHhhhhhh-h----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceecccc
Q 011408 263 VNHLHEGLKHGLKSE-L----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYD 337 (486)
Q Consensus 263 ~~~l~~~l~~~~~~~-~----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 337 (486)
+|+++|+.++.++ + .++|++|++.+.+.++..|.++|+||+|||+||.|+..++...|+.++|.||+.|||..
T Consensus 135 --sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~ 212 (327)
T cd02664 135 --SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPV 212 (327)
T ss_pred --CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCc
Confidence 7899999988643 2 37899999999999999999999999999999999998888899999999999999998
Q ss_pred ccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeE
Q 011408 338 FCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIY 417 (486)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 417 (486)
++...... .+... . .++ ..+..........|
T Consensus 213 ~~~~~~~~--~~~~~-----------------~-------------------------~~~-----~~~~~~~~~~~~~Y 243 (327)
T cd02664 213 RVESKSSE--SPLEK-----------------K-------------------------EEE-----SGDDGELVTRQVHY 243 (327)
T ss_pred cccccccc--ccccc-----------------c-------------------------ccc-----ccccccccCCCceE
Confidence 76421000 00000 0 000 00001112445789
Q ss_pred EEeEEEEeecCCCCCCceEEEEEccC---------------------CeEEEeeCCCceecChhhhhhccCCCCCceEEE
Q 011408 418 DLVAVLTHKGRSADSGHYVAWVKQES---------------------GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYI 476 (486)
Q Consensus 418 ~L~aVv~H~G~~~~~GHY~a~vk~~~---------------------~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYl 476 (486)
+|+|||+|.|.++++|||+||+|... +.|++|||+.|+++++++|.+..+++.+.+|||
T Consensus 244 ~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYl 323 (327)
T cd02664 244 RLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYI 323 (327)
T ss_pred EEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEE
Confidence 99999999998799999999999643 799999999999999999998777888899999
Q ss_pred EEEe
Q 011408 477 CMYK 480 (486)
Q Consensus 477 LfY~ 480 (486)
|||+
T Consensus 324 LfY~ 327 (327)
T cd02664 324 LFYE 327 (327)
T ss_pred EEeC
Confidence 9996
No 7
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-59 Score=459.80 Aligned_cols=303 Identities=28% Similarity=0.433 Sum_probs=255.0
Q ss_pred cccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHhh
Q 011408 104 AGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV--KPVAPMQFWMLLRKK 181 (486)
Q Consensus 104 ~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~i~p~~~~~~l~~~ 181 (486)
+||.|+||||||||+||+|+++|+||++++....... ........++.++|+.||..|+.+. ..+.|..|+.+++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCT-CLSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccc-cccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Confidence 6999999999999999999999999999998653321 1123456799999999999995443 688999999999888
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC-----CCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEE
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA-----SEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALK 256 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~-----~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~ 256 (486)
.+.|. ++.||||+||+..||+.|++++..... ....+.|.++|+|.+.++++|..|++.+.+.|+|+.|+
T Consensus 80 ~~~f~-----~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~ls 154 (328)
T cd02660 80 SRNLA-----GYSQQDAHEFFQFLLDQLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLS 154 (328)
T ss_pred chhhc-----ccccccHHHHHHHHHHHHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecccceee
Confidence 78777 789999999999999999998865422 22246799999999999999999999999999999999
Q ss_pred EeccCCc--------------chHHHHHHhhhhhh-hh---hcCcccCCcceEeeeeEecccCCceEEEEEEEEEecccc
Q 011408 257 CHISHEV--------------NHLHEGLKHGLKSE-LE---KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESN 318 (486)
Q Consensus 257 l~i~~~~--------------~~l~~~l~~~~~~~-~~---~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~ 318 (486)
++++... .+|+++|+.++.++ +. +.|+.|+....+.++..|.++|++|+|||+||.|+.. +
T Consensus 155 l~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~ 233 (328)
T cd02660 155 LDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLN-K 233 (328)
T ss_pred eeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCC-C
Confidence 9997642 68999999999744 33 4799999999999999999999999999999999875 5
Q ss_pred ccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCccccc
Q 011408 319 QKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVAS 398 (486)
Q Consensus 319 ~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (486)
...|+...|.||.+|||.+|+..+.... .
T Consensus 234 ~~~K~~~~v~fp~~Ldl~~~~~~~~~~~---------------------------------------~------------ 262 (328)
T cd02660 234 TSRKIDTYVQFPLELNMTPYTSSSIGDT---------------------------------------Q------------ 262 (328)
T ss_pred CCcCCCcEEeCCCEechhhhcccccccc---------------------------------------c------------
Confidence 5689999999999999999987531000 0
Q ss_pred CCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEE
Q 011408 399 SQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICM 478 (486)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLf 478 (486)
..........|+|+|||+|.| +.++|||+||+|..+++|++|||+.|+++++++|+. ..|||||
T Consensus 263 --------~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~-------~~ayil~ 326 (328)
T cd02660 263 --------DSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLK-------SQAYLLF 326 (328)
T ss_pred --------ccccCCCCceEEEEEEEEeec-cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcC-------CCcEEEE
Confidence 011124457899999999999 588999999999666999999999999999999986 6799999
Q ss_pred Ee
Q 011408 479 YK 480 (486)
Q Consensus 479 Y~ 480 (486)
|.
T Consensus 327 Y~ 328 (328)
T cd02660 327 YH 328 (328)
T ss_pred eC
Confidence 95
No 8
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.1e-59 Score=450.64 Aligned_cols=286 Identities=24% Similarity=0.341 Sum_probs=234.7
Q ss_pred hhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 011408 97 VLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWM 176 (486)
Q Consensus 97 ~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~ 176 (486)
++....++||.|+||||||||+||+|+++|+||+.+.+...... .......+...|+.+|... ...+.|..|+.
T Consensus 18 ~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~---~~~~~q~~~~~l~~~~~~~---~~~~~P~~~~~ 91 (332)
T cd02671 18 RENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLIS---SVEQLQSSFLLNPEKYNDE---LANQAPRRLLN 91 (332)
T ss_pred cccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcccC---cHHHHHHHHHHHHHHHhhc---ccccCHHHHHH
Confidence 34456789999999999999999999999999999987641110 0001122223334444322 24557999999
Q ss_pred HHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEE
Q 011408 177 LLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALK 256 (486)
Q Consensus 177 ~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~ 256 (486)
+++...|.|. .++||||+|||..||+.|+.. +.++|+|++.++++|..|+..+.+.|+|+.|+
T Consensus 92 ~l~~~~~~f~-----~~~QQDA~EFl~~LLd~L~~~------------i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~ls 154 (332)
T cd02671 92 ALREVNPMYE-----GYLQHDAQEVLQCILGNIQEL------------VEKDFQGQLVLRTRCLECETFTERREDFQDIS 154 (332)
T ss_pred HHHHhccccC-----CccccCHHHHHHHHHHHHHHH------------HHhhhceEEEEEEEeCCCCCeeceecccEEEE
Confidence 9999999987 789999999999999999842 78899999999999999999999999999999
Q ss_pred EeccCCc------------------chHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEE
Q 011408 257 CHISHEV------------------NHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFW 313 (486)
Q Consensus 257 l~i~~~~------------------~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~ 313 (486)
|+|+... .+|+++|+.|+.++. .+.|++|+..+.+.++..|.++|++|+|||+||.+
T Consensus 155 L~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~ 234 (332)
T cd02671 155 VPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAA 234 (332)
T ss_pred EEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeecc
Confidence 9998652 489999999987543 37899999999999999999999999999999997
Q ss_pred eccc----cccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCC
Q 011408 314 KRES----NQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASN 389 (486)
Q Consensus 314 ~~~~----~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (486)
+... +...|+++.|.||..||+.+++..
T Consensus 235 ~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~------------------------------------------------ 266 (332)
T cd02671 235 NGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK------------------------------------------------ 266 (332)
T ss_pred ccccccccCCceecCccccCccccccccccCC------------------------------------------------
Confidence 6421 346899999999999999866532
Q ss_pred CCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccC--
Q 011408 390 GSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSG-- 467 (486)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~-- 467 (486)
.....|+|+|||+|.|.++++|||+|||| |++|||+.|++++++++.....
T Consensus 267 ----------------------~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~ 319 (332)
T cd02671 267 ----------------------PKNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPN 319 (332)
T ss_pred ----------------------CCCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCC
Confidence 22368999999999997789999999999 9999999999999999876432
Q ss_pred CCCCceEEEEEEe
Q 011408 468 GGDWHMAYICMYK 480 (486)
Q Consensus 468 g~~~~~aYlLfY~ 480 (486)
+....+||||||+
T Consensus 320 ~~~~~~aYiLfY~ 332 (332)
T cd02671 320 TSSTSTPYLLFYK 332 (332)
T ss_pred CCCCCceEEEEEC
Confidence 2345799999995
No 9
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-58 Score=455.82 Aligned_cols=311 Identities=30% Similarity=0.464 Sum_probs=255.3
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHh
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWMLLRK 180 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~ 180 (486)
+++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.||..|..+. ..+.|..+.
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~----~~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~----- 71 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT----EDDDDNKSVPLALQRLFLFLQLSESPVKTTELTD----- 71 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc----ccCcccccHHHHHHHHHHHHHhCCccccCcchhh-----
Confidence 4799999999999999999999999999999986311 112345789999999999998765 445554443
Q ss_pred hCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEecc
Q 011408 181 KYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHIS 260 (486)
Q Consensus 181 ~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~ 260 (486)
....+.+..+..++||||+||+..||+.|+.++... ...+.+.++|+|.+...++|..|+..+...++|+.|+++++
T Consensus 72 ~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~---~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~ 148 (334)
T cd02659 72 KTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT---GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVK 148 (334)
T ss_pred eeccCCCCCCCcccchhHHHHHHHHHHHHHHHhccC---cccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcC
Confidence 112233344457899999999999999999988643 22456999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceecc
Q 011408 261 HEVNHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDV 335 (486)
Q Consensus 261 ~~~~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl 335 (486)
.. .+++++|+.++..+. .+.|++|+....+.++..|.++|++|+|||+||.|+...+...|+...|.||..|||
T Consensus 149 ~~-~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl 227 (334)
T cd02659 149 GK-KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDM 227 (334)
T ss_pred CC-CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecC
Confidence 64 589999999987443 268999999989999999999999999999999999877788999999999999999
Q ss_pred ccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCe
Q 011408 336 YDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTG 415 (486)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (486)
.+|+..+..... . . .........
T Consensus 228 ~~~~~~~~~~~~-----------------------------~--------~--------------------~~~~~~~~~ 250 (334)
T cd02659 228 EPYTEKGLAKKE-----------------------------G--------D--------------------SEKKDSESY 250 (334)
T ss_pred cccccccccccc-----------------------------c--------c--------------------ccccCCCCe
Confidence 999876321000 0 0 000123457
Q ss_pred eEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCC---------------CceEEEEEE
Q 011408 416 IYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGD---------------WHMAYICMY 479 (486)
Q Consensus 416 ~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~---------------~~~aYlLfY 479 (486)
.|+|+|||+|.| +.++|||+||+|. .++.|++|||+.|+++++++|++.++||. +++||||||
T Consensus 251 ~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y 329 (334)
T cd02659 251 IYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFY 329 (334)
T ss_pred eEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEE
Confidence 899999999999 5899999999996 47999999999999999999988887775 568999999
Q ss_pred eecc
Q 011408 480 KARS 483 (486)
Q Consensus 480 ~r~~ 483 (486)
+|++
T Consensus 330 ~~~~ 333 (334)
T cd02659 330 ERKS 333 (334)
T ss_pred EEeC
Confidence 9965
No 10
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-58 Score=447.40 Aligned_cols=279 Identities=29% Similarity=0.437 Sum_probs=240.0
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC---------------CCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV---------------KPV 169 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---------------~~i 169 (486)
||.|+||||||||+||+|+++|+||++++...... ......+..++.++|++||..|+... .++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 79 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF-PSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGI 79 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc-CCCcCCccccHHHHHHHHHHHhcCCCcCCCcccccccccccccc
Confidence 99999999999999999999999999998743221 11223456789999999999987632 468
Q ss_pred chHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeec
Q 011408 170 APMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSET 249 (486)
Q Consensus 170 ~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~ 249 (486)
.|..|+.+++...|.|. .+.||||+||+..||+.|++++... ....+.++|+|.+.++++|..|+..+.+.
T Consensus 80 ~p~~~~~~l~~~~~~f~-----~~~QqDa~Efl~~ll~~l~~~~~~~----~~~~~~~~f~~~~~~~i~C~~C~~~s~~~ 150 (311)
T cd02658 80 KPSMFKALIGKGHPEFS-----TMRQQDALEFLLHLIDKLDRESFKN----LGLNPNDLFKFMIEDRLECLSCKKVKYTS 150 (311)
T ss_pred CcHHHHHHHhccChhhc-----ccccccHHHHHHHHHHHHHHhhccc----ccCCchhheEEEeeEEEEcCCCCCEEEee
Confidence 99999999999999998 7899999999999999999988632 13448899999999999999999999999
Q ss_pred CceEEEEEeccCCc-------------chHHHHHHhhhh-hhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEec
Q 011408 250 ESIYALKCHISHEV-------------NHLHEGLKHGLK-SELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKR 315 (486)
Q Consensus 250 e~~~~l~l~i~~~~-------------~~l~~~l~~~~~-~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~ 315 (486)
|++..|+|+++... .+|+++|+.|+. +.++++|+.|+....+.++.+|.++|++|+|||+||.|+.
T Consensus 151 e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~ 230 (311)
T cd02658 151 ELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLE 230 (311)
T ss_pred cceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCCceEEEEeEEEEecC
Confidence 99999999987542 389999999987 5677899999999999999999999999999999999964
Q ss_pred cccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcc
Q 011408 316 ESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESS 395 (486)
Q Consensus 316 ~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (486)
. ....|+...|.||..| .
T Consensus 231 ~-~~~~Ki~~~v~~p~~l-------~------------------------------------------------------ 248 (311)
T cd02658 231 N-WVPKKLDVPIDVPEEL-------G------------------------------------------------------ 248 (311)
T ss_pred C-CceEeeccccccCCcC-------C------------------------------------------------------
Confidence 3 3468999999999766 1
Q ss_pred cccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEcc---CCeEEEeeCCCceecChhhhhhccCCCCCc
Q 011408 396 VASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQE---SGKWIEYDDDNPLPQREEDITKLSGGGDWH 472 (486)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~---~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~ 472 (486)
...|+|+|||+|.|.++++|||+||+|.. +++||+|||+.|++++..+|.+ .
T Consensus 249 ------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~-------~ 303 (311)
T cd02658 249 ------------------PGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMK-------K 303 (311)
T ss_pred ------------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccC-------C
Confidence 14699999999999879999999999953 2999999999999999988865 6
Q ss_pred eEEEEEEe
Q 011408 473 MAYICMYK 480 (486)
Q Consensus 473 ~aYlLfY~ 480 (486)
+||||||+
T Consensus 304 ~~YilfY~ 311 (311)
T cd02658 304 LGYIYFYQ 311 (311)
T ss_pred cceEEEEC
Confidence 89999996
No 11
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.6e-58 Score=444.60 Aligned_cols=290 Identities=29% Similarity=0.392 Sum_probs=251.4
Q ss_pred CcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHhh
Q 011408 103 SAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWMLLRKK 181 (486)
Q Consensus 103 ~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~~ 181 (486)
|+||.|+||||||||+||+|+++|+|+++++....... ......++.++|+.++..+..+. ..+.|..|..++...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~ 77 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKD---CCNEGFCMMCALEAHVERALASSGPGSAPRIFSSNLKQI 77 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhh---ccCCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHHHH
Confidence 79999999999999999999999999999987553321 12345689999999998887554 889999999999988
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC--------CCCCccccccceEEEEEEEEeCCCCCeeeecCceE
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA--------SEIPDTVKALFGIDIVSRVHCQESGEESSETESIY 253 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~--------~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~ 253 (486)
.+.|. .+.||||+|||.+||+.|+.++..... ....+.+.++|+|++.+.++|..|+..+.+.|.|+
T Consensus 78 ~~~f~-----~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~ 152 (304)
T cd02661 78 SKHFR-----IGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFL 152 (304)
T ss_pred HHhhc-----CcchhhHHHHHHHHHHHHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccce
Confidence 88887 779999999999999999988643311 12356799999999999999999999999999999
Q ss_pred EEEEeccCCcchHHHHHHhhhhhhh-h----hcCcccCCcceEeeeeEecccCCceEEEEEEEEEecccccccccccccc
Q 011408 254 ALKCHISHEVNHLHEGLKHGLKSEL-E----KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVD 328 (486)
Q Consensus 254 ~l~l~i~~~~~~l~~~l~~~~~~~~-~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~ 328 (486)
.|+++++.. .+|+++|+.++..+. + +.|++|++...+.++..|.++|++|+|||+||.++ ...|+.+.|.
T Consensus 153 ~l~l~i~~~-~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~ 227 (304)
T cd02661 153 DLSLDIKGA-DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQIS 227 (304)
T ss_pred eeeeecCCC-CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccCCeEe
Confidence 999999876 589999999987432 2 58999999999999999999999999999999987 3579999999
Q ss_pred ccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCC
Q 011408 329 YPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTD 408 (486)
Q Consensus 329 fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (486)
||+.|||.+|+..+
T Consensus 228 f~~~L~l~~~~~~~------------------------------------------------------------------ 241 (304)
T cd02661 228 FPETLDLSPYMSQP------------------------------------------------------------------ 241 (304)
T ss_pred cCCeechhhccccC------------------------------------------------------------------
Confidence 99999999988642
Q ss_pred cCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 409 KETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 409 ~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
......|+|+|||+|.|.++++|||+||+|..+++|++|||+.|+++++++|++ .+||||||.
T Consensus 242 --~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~-------~~aYil~Y~ 304 (304)
T cd02661 242 --NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLS-------QKAYILFYI 304 (304)
T ss_pred --CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcC-------CCcEEEEeC
Confidence 133468999999999998779999999999778999999999999999999987 689999994
No 12
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.4e-57 Score=433.09 Aligned_cols=249 Identities=33% Similarity=0.506 Sum_probs=217.4
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQ 184 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~ 184 (486)
||.|+||||||||+||+|+++|+||++++. +|..|+..+....|.
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-----------------------------------~P~~~~~~l~~~~~~ 45 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-----------------------------------TPKELFSQVCRKAPQ 45 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-----------------------------------CHHHHHHHHHHhhHh
Confidence 999999999999999999999999999885 677788888877788
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccC---
Q 011408 185 FGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISH--- 261 (486)
Q Consensus 185 f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~--- 261 (486)
|. .++||||+|||..||+.|+ +.+.++|.|++.++++|..|+..+.+.|+|+.|+|+++.
T Consensus 46 f~-----~~~QqDA~Efl~~lld~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~ 108 (279)
T cd02667 46 FK-----GYQQQDSHELLRYLLDGLR------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIK 108 (279)
T ss_pred hc-----CCchhhHHHHHHHHHHHHH------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccC
Confidence 87 7899999999999999998 238899999999999999999999999999999998753
Q ss_pred CcchHHHHHHhhhhhh-hh----hcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccc
Q 011408 262 EVNHLHEGLKHGLKSE-LE----KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVY 336 (486)
Q Consensus 262 ~~~~l~~~l~~~~~~~-~~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~ 336 (486)
...+|+++|+.|+.++ +. +.|+.|+. +.++..|.++|++|+|||+||.|+..+ ...|++..|.||+.|||.
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~~Ki~~~v~fP~~Ldl~ 184 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSA-NLRKVSRHVSFPEILDLA 184 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCccc-CceecCceEeCCCccchh
Confidence 2458999999998744 33 68999987 788999999999999999999998764 568999999999999999
Q ss_pred cccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCee
Q 011408 337 DFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGI 416 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (486)
+|+..+.. .........
T Consensus 185 ~~~~~~~~---------------------------------------------------------------~~~~~~~~~ 201 (279)
T cd02667 185 PFCDPKCN---------------------------------------------------------------SSEDKSSVL 201 (279)
T ss_pred hccCcccc---------------------------------------------------------------ccccCCCce
Confidence 99875210 001234478
Q ss_pred EEEeEEEEeecCCCCCCceEEEEEcc----------------------CCeEEEeeCCCceecChhhhhhccCCCCCceE
Q 011408 417 YDLVAVLTHKGRSADSGHYVAWVKQE----------------------SGKWIEYDDDNPLPQREEDITKLSGGGDWHMA 474 (486)
Q Consensus 417 Y~L~aVv~H~G~~~~~GHY~a~vk~~----------------------~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~a 474 (486)
|+|+|||+|.|. .++|||+||+|.. ++.||+|||+.|++++.++|.+ ..|
T Consensus 202 Y~L~~vi~H~G~-~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~-------~~a 273 (279)
T cd02667 202 YRLYGVVEHSGT-MRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLK-------SEA 273 (279)
T ss_pred EEEEEEEEEeCC-CCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhcc-------CCc
Confidence 999999999996 5999999999962 6899999999999999999987 679
Q ss_pred EEEEEe
Q 011408 475 YICMYK 480 (486)
Q Consensus 475 YlLfY~ 480 (486)
|||||+
T Consensus 274 YiLfYe 279 (279)
T cd02667 274 YLLFYE 279 (279)
T ss_pred EEEEeC
Confidence 999996
No 13
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-56 Score=451.49 Aligned_cols=290 Identities=22% Similarity=0.283 Sum_probs=239.9
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC---CCcchHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV---KPVAPMQFWML 177 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~i~p~~~~~~ 177 (486)
++++||.|+||||||||+||+|+++|+||++++........ .....+++++|..+++.+|... ..++|..|+.+
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~ 193 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQA 193 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHH
Confidence 46899999999999999999999999999999976532211 1234689999999999998764 68999999999
Q ss_pred HHhhC-CcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCC-------------
Q 011408 178 LRKKY-PQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESG------------- 243 (486)
Q Consensus 178 l~~~~-~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~------------- 243 (486)
++... +.|+ +++||||+|||.+||+.|++++.... ....+.|.++|+|++.++++|..|.
T Consensus 194 l~~~~~~~f~-----~~~QqDA~EFl~~LLd~L~~~l~~~~-~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c 267 (440)
T cd02669 194 VSKVSKKKFS-----ITEQSDPVEFLSWLLNTLHKDLGGSK-KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKD 267 (440)
T ss_pred HHhhcccccC-----CcccCCHHHHHHHHHHHHHHHhccCC-CCCCCcceeccCceEEEEEEeecccccccccccccccc
Confidence 98764 4565 78999999999999999999987532 2346789999999999999987654
Q ss_pred -C-eeeecCceEEEEEeccCCc-------------chHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEE
Q 011408 244 -E-ESSETESIYALKCHISHEV-------------NHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQF 308 (486)
Q Consensus 244 -~-~s~~~e~~~~l~l~i~~~~-------------~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l 308 (486)
. .+++.++|+.|+|+|+... .+|+++|+. +.|+.|.....++|+.+|.+||+||+|||
T Consensus 268 ~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k-------y~~~~c~~~~~a~k~~~I~~LP~vLiihL 340 (440)
T cd02669 268 SRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK-------YDGKTETELKDSLKRYLISRLPKYLIFHI 340 (440)
T ss_pred cccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh-------cCCccceecccceEEEEEeeCCcEEEEEE
Confidence 2 3677899999999998642 134444432 45778887778899999999999999999
Q ss_pred EEEEEeccccccccccccccccce-eccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCC
Q 011408 309 VRFFWKRESNQKAKILRKVDYPLE-LDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSA 387 (486)
Q Consensus 309 ~Rf~~~~~~~~~~Ki~~~v~fp~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (486)
+||.++. +...|+.+.|.||.. |||.+|+.++.
T Consensus 341 KRF~~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~-------------------------------------------- 374 (440)
T cd02669 341 KRFSKNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK-------------------------------------------- 374 (440)
T ss_pred ecccCCC--CccccCCCEEECCCCccchhhhhCccc--------------------------------------------
Confidence 9999885 556899999999996 89999986420
Q ss_pred CCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhcc
Q 011408 388 SNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLS 466 (486)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~ 466 (486)
........|+|+|||+|.|..+++|||+||+|+ .+++||+|||+.|+++++++|..
T Consensus 375 ---------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~-- 431 (440)
T cd02669 375 ---------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFL-- 431 (440)
T ss_pred ---------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhcc--
Confidence 012345789999999999964499999999996 47999999999999999999987
Q ss_pred CCCCCceEEEEEEe
Q 011408 467 GGGDWHMAYICMYK 480 (486)
Q Consensus 467 ~g~~~~~aYlLfY~ 480 (486)
..||||||+
T Consensus 432 -----~eaYll~Y~ 440 (440)
T cd02669 432 -----SESYIQIWE 440 (440)
T ss_pred -----CCceEEEeC
Confidence 789999996
No 14
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-57 Score=440.77 Aligned_cols=384 Identities=23% Similarity=0.259 Sum_probs=305.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe--cCC---cCCCCcccccc--CcCCCCeEEE-------------
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV--KGG---LLKDDSDWSML--GVKQGQRLMM------------- 70 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~--~~~---~l~d~~~l~~~--~i~~~~~i~l------------- 70 (486)
+.+. +++++..|+.+|-+++...+-.|.++-|||+ .+. .+-++.++..+ .+.+++....
T Consensus 157 ~p~~-~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d~s~l 235 (823)
T COG5560 157 DPVP-HSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVL 235 (823)
T ss_pred Ccce-eeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchhhhcccHHHHhccchhhh
Confidence 6667 8899999999999999999999999999994 221 11122222222 2222322211
Q ss_pred -eeccccccCCCCCCCccccCCchhhhhhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCC--CCCc
Q 011408 71 -MGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSND--VDQS 147 (486)
Q Consensus 71 -~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~--~~~~ 147 (486)
+.....++.|+.... ..+-+..- .+. -+.+||.|+||||||||+||||.|++++|+||+...+...++. +.+.
T Consensus 236 ll~kit~np~wlvdsi--~~~~n~si-nke-~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgm 311 (823)
T COG5560 236 LLSKITRNPDWLVDSI--VDDHNRSI-NKE-AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGM 311 (823)
T ss_pred HHhhhccCCccceeee--cchhhhhH-Hhh-ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccch
Confidence 111122334443321 11111000 111 2679999999999999999999999999999998777666665 4567
Q ss_pred hhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC------C-
Q 011408 148 SHMLTVATSELFNDLDKSV-KPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA------S- 219 (486)
Q Consensus 148 ~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~------~- 219 (486)
.+.++.++..|.+++.... .++.|+.|+..++..+..|. |+.|||++||+.++||.||+.++..-. +
T Consensus 312 hg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~fs-----Gy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPd 386 (823)
T COG5560 312 HGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFS-----GYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPD 386 (823)
T ss_pred hhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHHhc-----CccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCC
Confidence 7899999999999988776 89999999999999999998 999999999999999999999973210 0
Q ss_pred ----------------------CCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCcc-------------
Q 011408 220 ----------------------EIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEVN------------- 264 (486)
Q Consensus 220 ----------------------~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~~------------- 264 (486)
.-.+.|.++|.|-+++++.|+.|+..+++++||..|+||+|-...
T Consensus 387 L~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~ 466 (823)
T COG5560 387 LSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGR 466 (823)
T ss_pred CCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCC
Confidence 125779999999999999999999999999999999999964322
Q ss_pred --------------------------------------------------------------------------------
Q 011408 265 -------------------------------------------------------------------------------- 264 (486)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (486)
T Consensus 467 ~~pl~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh 546 (823)
T COG5560 467 RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVH 546 (823)
T ss_pred CCceEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011408 265 -------------------------------------------------------------------------------- 264 (486)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (486)
T Consensus 547 ~~~~~gYks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kr 626 (823)
T COG5560 547 LRIEKGYKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKR 626 (823)
T ss_pred ccccccccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchh
Confidence
Q ss_pred -------------------------------------------------hHHHHHHhhhhhhhh-----hcCcccCCcce
Q 011408 265 -------------------------------------------------HLHEGLKHGLKSELE-----KASPALGRSAV 290 (486)
Q Consensus 265 -------------------------------------------------~l~~~l~~~~~~~~~-----~~c~~c~~~~~ 290 (486)
+|++||..|.+.+.. ++|+.|+....
T Consensus 627 ee~veeE~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrq 706 (823)
T COG5560 627 EEQVEEEGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ 706 (823)
T ss_pred hhhhhhhhccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhh
Confidence 788999999875432 69999999999
Q ss_pred EeeeeEecccCCceEEEEEEEEEeccccccccccccccccc-eeccccccChhhhccccchhhHhhhHhhcccCcccCCC
Q 011408 291 YLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPL-ELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEK 369 (486)
Q Consensus 291 ~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (486)
++|+..|+++|.||+|||+||...+ ..+.||++-|.||. .|||+.+...-
T Consensus 707 asKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVeyPiddldLs~~~~~~--------------------------- 757 (823)
T COG5560 707 ASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEYPIDDLDLSGVEYMV--------------------------- 757 (823)
T ss_pred hhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhccccccccccceEEee---------------------------
Confidence 9999999999999999999999877 45789999999997 99998876431
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEE
Q 011408 370 SSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIE 448 (486)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~ 448 (486)
.++...|+|+||=.|+| ...+|||+||+|+ .++.||+
T Consensus 758 -----------------------------------------~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~ 795 (823)
T COG5560 758 -----------------------------------------DDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYL 795 (823)
T ss_pred -----------------------------------------cCcceEEEeeecccccc-ccCCcceeeeeecccCCceEE
Confidence 12337899999999999 6999999999997 5789999
Q ss_pred eeCCCceecChhhhhhccCCCCCceEEEEEEeec
Q 011408 449 YDDDNPLPQREEDITKLSGGGDWHMAYICMYKAR 482 (486)
Q Consensus 449 ~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~ 482 (486)
|||++|+++.+++... ..||+|||+|+
T Consensus 796 fdDsritevdped~vt-------ssaYvLFyrrk 822 (823)
T COG5560 796 FDDSRITEVDPEDSVT-------SSAYVLFYRRK 822 (823)
T ss_pred ecCccccccCcccccc-------ceeEEEEEEec
Confidence 9999999999998776 68999999996
No 15
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-54 Score=422.46 Aligned_cols=320 Identities=28% Similarity=0.434 Sum_probs=269.0
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWMLLR 179 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~ 179 (486)
-..+||+|-|+|||||+++|-|.++|.+|..+........... -.....+++.++.+|.+|..+. .++-|+.|+..++
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd-~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr 171 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPD-MSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFR 171 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhh
Confidence 4679999999999999999999999999998887664411011 1112339999999999999888 9999999999887
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
... .+.+..+||||.|||..|+|.+++.++.. ..+..+.+.|+|.+..+.+|.+|.|.....|+|..|++.|
T Consensus 172 ~~~-----~pln~reqhDA~eFf~sLld~~De~LKkl---g~p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i 243 (944)
T KOG1866|consen 172 LWG-----EPLNLREQHDALEFFNSLLDSLDEALKKL---GHPQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDI 243 (944)
T ss_pred ccC-----CccchHhhhhHHHHHHHHHHHHHHHHHHh---CCcHHHHHHhcCccchhhhhccCCcccCccccceeeeeec
Confidence 542 34557799999999999999999999875 3455689999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceec
Q 011408 260 SHEVNHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELD 334 (486)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ld 334 (486)
.. .+|+++|++|+.+++ .++|++|+.++...++.+|.+||++|+|||+||.||++.+...|.++.++||.+||
T Consensus 244 ~~--~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ld 321 (944)
T KOG1866|consen 244 RH--QNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELD 321 (944)
T ss_pred cc--chHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhc
Confidence 83 689999999987654 37999999999999999999999999999999999999999999999999999999
Q ss_pred cccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCC
Q 011408 335 VYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLT 414 (486)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (486)
|.+|+..+.... +++..+ ++ + ....+..+
T Consensus 322 MePYtvsg~a~~-----------e~~~~~------------~g------~----------------------~~e~s~~t 350 (944)
T KOG1866|consen 322 MEPYTVSGVAKL-----------EGENVE------------SG------Q----------------------QLEQSAGT 350 (944)
T ss_pred CCceeehhhhhh-----------ccccCC------------cC------c----------------------ccccccCc
Confidence 999998754210 000000 00 0 01112445
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEEc----cCCeEEEeeCCCceecChhhhhhccCCCC-------------CceEEEE
Q 011408 415 GIYDLVAVLTHKGRSADSGHYVAWVKQ----ESGKWIEYDDDNPLPQREEDITKLSGGGD-------------WHMAYIC 477 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~~~~GHY~a~vk~----~~~~W~~~nD~~V~~~~~~~v~~~~~g~~-------------~~~aYlL 477 (486)
.+|+|+||++|.|. +.+|||++|++. .+++||+|||..|++.+-.++..+++||+ |++||||
T Consensus 351 ~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYml 429 (944)
T KOG1866|consen 351 TKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYML 429 (944)
T ss_pred ceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHH
Confidence 78999999999995 999999999998 56899999999999999999999999985 6899999
Q ss_pred EEeecc
Q 011408 478 MYKARS 483 (486)
Q Consensus 478 fY~r~~ 483 (486)
||+|.+
T Consensus 430 FYer~~ 435 (944)
T KOG1866|consen 430 FYERMD 435 (944)
T ss_pred HHHHhc
Confidence 999986
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-51 Score=384.38 Aligned_cols=212 Identities=33% Similarity=0.496 Sum_probs=187.8
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQ 184 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~ 184 (486)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999988531
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeee-ecCceEEEEEeccCC-
Q 011408 185 FGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESS-ETESIYALKCHISHE- 262 (486)
Q Consensus 185 f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~-~~e~~~~l~l~i~~~- 262 (486)
+||||+|||..||+.|+. .+.++|.|++.+.++|..|++.+. +.|+|+.|+++++..
T Consensus 33 ---------~QqDa~EFl~~ll~~l~~------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~ 91 (240)
T cd02662 33 ---------EQQDAHELFQVLLETLEQ------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQS 91 (240)
T ss_pred ---------hhcCHHHHHHHHHHHHHH------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccC
Confidence 499999999999999983 277899999999999999999865 599999999999876
Q ss_pred ---cchHHHHHHhhhhhh-hh-hcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceecccc
Q 011408 263 ---VNHLHEGLKHGLKSE-LE-KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYD 337 (486)
Q Consensus 263 ---~~~l~~~l~~~~~~~-~~-~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 337 (486)
..+|+++|+.++..+ ++ +.|++| +..|.++|++|+|||+||.|+.. +...|++..|.||+.|
T Consensus 92 ~~~~~sl~~~L~~~~~~E~l~~~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l---- 158 (240)
T cd02662 92 SGSGTTLEHCLDDFLSTEIIDDYKCDRC--------QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL---- 158 (240)
T ss_pred CCCCCCHHHHHHHhcCcccccCcCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc----
Confidence 468999999999754 43 689999 56899999999999999999987 6789999999999987
Q ss_pred ccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeE
Q 011408 338 FCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIY 417 (486)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 417 (486)
. ...|
T Consensus 159 ---~------------------------------------------------------------------------~~~Y 163 (240)
T cd02662 159 ---P------------------------------------------------------------------------KVLY 163 (240)
T ss_pred ---C------------------------------------------------------------------------CceE
Confidence 1 1479
Q ss_pred EEeEEEEeecCCCCCCceEEEEEcc---------------------CCeEEEeeCCCceecChhhhhhccCCCCCceEEE
Q 011408 418 DLVAVLTHKGRSADSGHYVAWVKQE---------------------SGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYI 476 (486)
Q Consensus 418 ~L~aVv~H~G~~~~~GHY~a~vk~~---------------------~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYl 476 (486)
+|+|||+|.|. .++|||+||+|.. .+.||+|||+.|+++++++|+. ..+|||
T Consensus 164 ~L~avi~H~G~-~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~------~~~aY~ 236 (240)
T cd02662 164 RLRAVVVHYGS-HSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLE------QKSAYM 236 (240)
T ss_pred EEEEEEEEecc-CCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhh------CCCEEE
Confidence 99999999995 6999999999963 3899999999999999999942 168999
Q ss_pred EEEe
Q 011408 477 CMYK 480 (486)
Q Consensus 477 LfY~ 480 (486)
|||+
T Consensus 237 LfYe 240 (240)
T cd02662 237 LFYE 240 (240)
T ss_pred EEeC
Confidence 9996
No 17
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-51 Score=365.45 Aligned_cols=307 Identities=24% Similarity=0.254 Sum_probs=233.3
Q ss_pred hccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCC--C-chhHHHHHHHHHHHHhcCCC-CCcchHH
Q 011408 98 LSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVD--Q-SSHMLTVATSELFNDLDKSV-KPVAPMQ 173 (486)
Q Consensus 98 ~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~--~-~~~~~~~~l~~l~~~l~~~~-~~i~p~~ 173 (486)
.....|.||.|.|||||||++||||+.+..+...++.......++... + +..-....+..|+..+..-+ .+|+|+.
T Consensus 66 ~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~n 145 (415)
T COG5533 66 KDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRN 145 (415)
T ss_pred hcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHH
Confidence 334579999999999999999999999999999665544433333322 2 22355666666666665544 8899999
Q ss_pred HHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC-C-------------------------------C
Q 011408 174 FWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS-E-------------------------------I 221 (486)
Q Consensus 174 ~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~-~-------------------------------~ 221 (486)
|++.+...++.|+ +.+|||+|||+.++||.||+++++.... . .
T Consensus 146 F~~i~~~~n~~fs-----~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn 220 (415)
T COG5533 146 FIDILSGRNKLFS-----GDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSN 220 (415)
T ss_pred HHHHHcccccccc-----ccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccc
Confidence 9999999999998 7799999999999999999999754211 0 0
Q ss_pred CccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCc-chHHHHHHhhhhhhh-----hhcCcccCCcceEeeee
Q 011408 222 PDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEV-NHLHEGLKHGLKSEL-----EKASPALGRSAVYLKES 295 (486)
Q Consensus 222 ~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~-~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~ 295 (486)
.+.|.+.|.|+..+++.|..|++.++++.+|..|.+|++.-+ -.|.+|++.|.+++. .++|++|+++..+.|+.
T Consensus 221 ~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~ 300 (415)
T COG5533 221 KSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRM 300 (415)
T ss_pred hHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheE
Confidence 356999999999999999999999999999999999997542 258999999987543 26899999999999999
Q ss_pred EecccCCceEEEEEEEEEeccccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCC
Q 011408 296 CINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKD 375 (486)
Q Consensus 296 ~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (486)
.|.++|++||||++||.. .|..|..||+..+.......+
T Consensus 301 ~I~~lP~~LII~i~RF~i------------~V~~~~kiD~p~gw~~~~~~e----------------------------- 339 (415)
T COG5533 301 EILVLPDVLIIHISRFHI------------SVMGRKKIDTPQGWKNTASVE----------------------------- 339 (415)
T ss_pred EEEecCceEEEEeeeeeE------------EeecccccCCCcchhccCCce-----------------------------
Confidence 999999999999999973 233334444444332210000
Q ss_pred CccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCce
Q 011408 376 NDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPL 455 (486)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~ 455 (486)
..+...+ .......+.+|+|.|||||.| +.++|||+++|+ .++.|+.|||+.|+
T Consensus 340 ---------------------~~v~~~f---~~~~~~~P~~Y~L~gv~Ch~G-~L~gGHY~s~v~-~~~~W~~~dDs~vr 393 (415)
T COG5533 340 ---------------------VNVTLLF---NNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVK-RSGTWNVYDDSQVR 393 (415)
T ss_pred ---------------------ecccccc---cCCCCCCccceeEEEEEeecc-eecCceeEEeee-ecCceEEechhhee
Confidence 0000000 011234457899999999999 699999999999 88999999999999
Q ss_pred ecChhhhhhccCCCCCceEEEEEEeec
Q 011408 456 PQREEDITKLSGGGDWHMAYICMYKAR 482 (486)
Q Consensus 456 ~~~~~~v~~~~~g~~~~~aYlLfY~r~ 482 (486)
.++-..-.. ..++|+|||+|.
T Consensus 394 ~~~~~t~~~------~pSsYilFY~r~ 414 (415)
T COG5533 394 KGSRTTSGS------HPSSYILFYTRS 414 (415)
T ss_pred eccceeccc------CCcceEEEEEec
Confidence 986432221 257999999984
No 18
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-51 Score=399.60 Aligned_cols=359 Identities=24% Similarity=0.363 Sum_probs=265.8
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-----------CCc
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-----------KPV 169 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----------~~i 169 (486)
++++||.|+||+||||||+|+|+++|.|....... ..........+..+|.|+|.+|...|..+. ..|
T Consensus 305 pgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~-~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngI 383 (763)
T KOG0944|consen 305 PGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ-ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGI 383 (763)
T ss_pred CCccceeecCcchhHHHHHHHheecccHHHhhccc-cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCc
Confidence 57899999999999999999999999999988876 344444556788999999999999986543 378
Q ss_pred chHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeec
Q 011408 170 APMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSET 249 (486)
Q Consensus 170 ~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~ 249 (486)
+|..|+..+++.+|.|+ ..+||||+|||.+||+.|++..... -..+.++|.+.+..++.|..|+..+.+.
T Consensus 384 sP~mFK~~igknHpeFs-----t~~QQDA~EFllfLl~ki~~n~rs~-----~~nptd~frF~ve~Rv~C~~c~kVrYs~ 453 (763)
T KOG0944|consen 384 SPLMFKALIGKNHPEFS-----TNRQQDAQEFLLFLLEKIRENSRSS-----LPNPTDLFRFEVEDRVSCLGCRKVRYSY 453 (763)
T ss_pred CHHHHHHHHcCCCcccc-----chhhhhHHHHHHHHHHHHhhccccc-----CCCHHHHHHhhhhhhhhhhccccccccc
Confidence 99999999999999999 7899999999999999999865442 2458999999999999999999999888
Q ss_pred CceEEEEEeccC-----CcchHHHHHHhhhhhh-hhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccc
Q 011408 250 ESIYALKCHISH-----EVNHLHEGLKHGLKSE-LEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKI 323 (486)
Q Consensus 250 e~~~~l~l~i~~-----~~~~l~~~l~~~~~~~-~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki 323 (486)
+.-+.+++|++. ....+..||+.|+... .+++|..|+.+..++++.+|.++|+||+||+.||.|.. ...+|+
T Consensus 454 ~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~d--w~pkKl 531 (763)
T KOG0944|consen 454 ESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQD--WVPKKL 531 (763)
T ss_pred hhheeeEeeccccccccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEecC--ceeeee
Confidence 888889999874 1238999999999975 45799999999999999999999999999999999944 567999
Q ss_pred cccccccceeccccccChhhhccc-------------cchhhHhhhHhhcccCcccCCCCC-----CCCCCcc-----cc
Q 011408 324 LRKVDYPLELDVYDFCSDDLRKKL-------------DAPRQKLRDEEGKKLGLKGGEKSS-----NSKDNDV-----KM 380 (486)
Q Consensus 324 ~~~v~fp~~Ldl~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~ 380 (486)
+..|.+|+.||++.|++.++++.. ...+..+.++-........+.+.. .+.+... -|
T Consensus 532 d~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HM 611 (763)
T KOG0944|consen 532 DVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHM 611 (763)
T ss_pred ccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhc
Confidence 999999999999999988754422 122222222222222111111110 0000000 00
Q ss_pred cccc---------------C--CC-C----------------------CCCC--------------------CcccccCC
Q 011408 381 TEAE---------------G--SA-S----------------------NGSG--------------------ESSVASSQ 400 (486)
Q Consensus 381 ~~~~---------------~--~~-~----------------------~~~~--------------------~~~~~~~~ 400 (486)
.+.+ + .+ + +.+. ..+...+.
T Consensus 612 dDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~ 691 (763)
T KOG0944|consen 612 DDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIE 691 (763)
T ss_pred cCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcch
Confidence 0000 0 00 0 0000 00000000
Q ss_pred CCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 401 DGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 401 ~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
....+ .........+|+|+|+|+|.|.++.+|||||++| ..|+|+.|||++|- .+.++.. ..+||+||+
T Consensus 692 ~~~~~-~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hir-KegkWVlfNDeKv~-~S~~ppK--------~lgYvY~y~ 760 (763)
T KOG0944|consen 692 SESTP-SGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIR-KEGKWVLFNDEKVA-ASQEPPK--------DLGYVYLYT 760 (763)
T ss_pred hhcCC-cccCCCCCcceeEEEEEecCCCCCCCcceEEEEe-ecCcEEEEcchhhh-hccCChh--------hcceEEEEE
Confidence 01111 1122456689999999999999999999999999 77999999999998 4444444 479999999
Q ss_pred ecc
Q 011408 481 ARS 483 (486)
Q Consensus 481 r~~ 483 (486)
|..
T Consensus 761 R~~ 763 (763)
T KOG0944|consen 761 RIA 763 (763)
T ss_pred ecC
Confidence 863
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-51 Score=395.49 Aligned_cols=290 Identities=24% Similarity=0.373 Sum_probs=218.8
Q ss_pred CcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCC-----------CCCCC------CchhHHHHHHHHHHHHhcCC
Q 011408 103 SAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGR-----------SNDVD------QSSHMLTVATSELFNDLDKS 165 (486)
Q Consensus 103 ~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~-----------~~~~~------~~~~~~~~~l~~l~~~l~~~ 165 (486)
|+||.|+||||||||+||+|+++|+||++++++..... ..... ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999998762211 00000 12347999999999999988
Q ss_pred C-CCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC----------CCCccccccceEEEE
Q 011408 166 V-KPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS----------EIPDTVKALFGIDIV 234 (486)
Q Consensus 166 ~-~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~----------~~~~~i~~~F~~~~~ 234 (486)
. .++.|..++..+. ..||||+||+..||+.|+.+++..... ...+.|.++|.|++.
T Consensus 81 ~~~~v~P~~~l~~l~-------------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~ 147 (343)
T cd02666 81 NTRSVTPSKELAYLA-------------LRQQDVTECIDNVLFQLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTK 147 (343)
T ss_pred CCCccCcHHHHHhcc-------------ccccchHHHHHHHHHHHHHHhcCccccccCcccccccchhhhhhHhceeeEE
Confidence 7 8999999987653 269999999999999999999754321 225579999999999
Q ss_pred EEEEeCCCC---CeeeecCceEEEEEeccC---------CcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCC
Q 011408 235 SRVHCQESG---EESSETESIYALKCHISH---------EVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPR 302 (486)
Q Consensus 235 ~~~~C~~c~---~~s~~~e~~~~l~l~i~~---------~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~ 302 (486)
+.++|..|+ ..+.+.|+|+.|+|+|.. ..++|.+||+.|+++++ |.++|+
T Consensus 148 ~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~------------------~~~~P~ 209 (343)
T cd02666 148 QQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS------------------LTKLPQ 209 (343)
T ss_pred EEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh------------------hccCCH
Confidence 999999997 678999999999999987 67899999999998776 999999
Q ss_pred ceEEEEEEEEEeccccccccccccccccceeccccccChh-----------hhccc-cchhhHhhhHhhcccCcccCCCC
Q 011408 303 YLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDD-----------LRKKL-DAPRQKLRDEEGKKLGLKGGEKS 370 (486)
Q Consensus 303 ~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 370 (486)
+|.|||+ .+++.|++.++|.+|--+. ..+.+ ...+....++......
T Consensus 210 vl~~qlq--------------~~~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~------- 268 (343)
T cd02666 210 RSQVQAQ--------------LAQPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHE------- 268 (343)
T ss_pred HHHHHHh--------------hcccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999998 3455555555555552211 10000 0000000000000000
Q ss_pred CCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEe
Q 011408 371 SNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEY 449 (486)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~ 449 (486)
+...+ .......|+|+|||+|.|. +++|||++|+|+ .++.|++|
T Consensus 269 ----------------------------~~~~~------~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~ 313 (343)
T cd02666 269 ----------------------------IEKQF------DDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKY 313 (343)
T ss_pred ----------------------------HHHhh------cccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEE
Confidence 00001 1244578999999999995 699999999997 45899999
Q ss_pred eCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 450 DDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 450 nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
||+.|++++.++|..... |...+||||+|+
T Consensus 314 dD~~V~~v~~~ev~~~~~-~~~~~pY~l~Yv 343 (343)
T cd02666 314 NDETVTVVPASEVFLFTL-GNTATPYFLVYV 343 (343)
T ss_pred ECCeeEEecHHHHhhccc-CCCCCCEEEEeC
Confidence 999999999999987643 455799999995
No 20
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-49 Score=357.68 Aligned_cols=199 Identities=27% Similarity=0.386 Sum_probs=169.9
Q ss_pred CchHHHHHHHHHHHHHHhhccCCC-----CCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCcchHHHH
Q 011408 195 QQDAEECWTQLLYTLSQSLRSVNA-----SEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEVNHLHEG 269 (486)
Q Consensus 195 QqDa~Efl~~ll~~l~~~~~~~~~-----~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~~~l~~~ 269 (486)
||||+||+..||+.|++.+..... ....+.|.++|.|++.+++.| |+..+.+.|+|+.|+|+|.+. .+|++|
T Consensus 22 QQDa~Ef~~~Lld~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~-~~L~e~ 98 (228)
T cd02665 22 QQDVSEFTHLLLDWLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGY-GNLHEC 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCC-CCHHHH
Confidence 999999999999999999975421 234567999999999988777 677789999999999999876 699999
Q ss_pred HHhhhhh-hhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccccccChhhhcccc
Q 011408 270 LKHGLKS-ELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLD 348 (486)
Q Consensus 270 l~~~~~~-~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~ 348 (486)
|+.++.+ +++. ..|...+.+.++..|.++|++|+|||+||.|+. +...|+.+.|.||..|.
T Consensus 99 L~~~~~ee~l~~--~~~~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l~-------------- 160 (228)
T cd02665 99 LEAAMFEGEVEL--LPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQIIQ-------------- 160 (228)
T ss_pred HHHhhhhccccc--ccccchhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCccC--------------
Confidence 9998764 5554 234444556777889999999999999999987 56799999999998870
Q ss_pred chhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecC
Q 011408 349 APRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGR 428 (486)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~ 428 (486)
...|+|+|||+|.|.
T Consensus 161 -----------------------------------------------------------------~~~Y~L~aVi~H~G~ 175 (228)
T cd02665 161 -----------------------------------------------------------------QVPYELHAVLVHEGQ 175 (228)
T ss_pred -----------------------------------------------------------------CceeEEEEEEEecCC
Confidence 036999999999995
Q ss_pred CCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhcc-CCCCCceEEEEEEe
Q 011408 429 SADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLS-GGGDWHMAYICMYK 480 (486)
Q Consensus 429 ~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~-~g~~~~~aYlLfY~ 480 (486)
+++|||+||+|. .++.|++|||+.|+++++++|...+ ||+++++||||||.
T Consensus 176 -~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 176 -ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred -CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999999999986 5899999999999999999998776 77788999999995
No 21
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=4e-48 Score=369.06 Aligned_cols=254 Identities=34% Similarity=0.546 Sum_probs=208.0
Q ss_pred CcccCccccchhhhhHHHHHhccHHHHHHHHhcccCC--CCCCCCCchhHHHHHHHHHHHHhcCC---CCCcchHHHHHH
Q 011408 103 SAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSG--RSNDVDQSSHMLTVATSELFNDLDKS---VKPVAPMQFWML 177 (486)
Q Consensus 103 ~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~i~p~~~~~~ 177 (486)
|+||.|.||||||||+||+|+++|+|++++....... ..........+++++|+.||..|+.. ...+.|..|+.+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 6899999999999999999999999999999751100 01112234568999999999999987 389999999999
Q ss_pred HHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC--------CCCCccccccceEEEEEEEEeCCCCCeeeec
Q 011408 178 LRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA--------SEIPDTVKALFGIDIVSRVHCQESGEESSET 249 (486)
Q Consensus 178 l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~--------~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~ 249 (486)
++...+.|. .+.||||+|||..||+.|++++..... ....+.+.++|.+++...+.|..|+..
T Consensus 81 l~~~~~~~~-----~~~qqDa~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~---- 151 (269)
T PF00443_consen 81 LSSINPSFS-----NGEQQDAHEFLSFLLDWLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS---- 151 (269)
T ss_dssp HHHHCGGGG-----SSSTEEHHHHHHHHHHHHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE----
T ss_pred ccccccccc-----cccccchhhhhcccccccchhhcccccccccccccccccccccccccccccccccccccccc----
Confidence 999988887 779999999999999999999876422 233566899999999999999999887
Q ss_pred CceEEEEEeccCCcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccc
Q 011408 250 ESIYALKCHISHEVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDY 329 (486)
Q Consensus 250 e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~f 329 (486)
...|.++|++|+|+|+||.|+...+...|+...|.|
T Consensus 152 --------------------------------------------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~ 187 (269)
T PF00443_consen 152 --------------------------------------------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEF 187 (269)
T ss_dssp --------------------------------------------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB-
T ss_pred --------------------------------------------ccccccccceeeeccccceecccccccccccccccc
Confidence 568999999999999999999987778999999999
Q ss_pred c-ceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCC
Q 011408 330 P-LELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTD 408 (486)
Q Consensus 330 p-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (486)
| +.|||..++..+.
T Consensus 188 ~~~~l~l~~~~~~~~----------------------------------------------------------------- 202 (269)
T PF00443_consen 188 PLEELDLSPYLEKNN----------------------------------------------------------------- 202 (269)
T ss_dssp -SSEEEGGGGBSSCC-----------------------------------------------------------------
T ss_pred Cchhhhhhhhhcccc-----------------------------------------------------------------
Confidence 9 7999999886521
Q ss_pred cCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccC-CeEEEeeCCCceecChhhhhhccCCCCCceEEEEEE
Q 011408 409 KETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQES-GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMY 479 (486)
Q Consensus 409 ~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~-~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY 479 (486)
........|+|+|||+|.| +.++|||+||||+.+ +.|++|||++|+++++++|.+.+ ..+||||||
T Consensus 203 ~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~----~~~~yll~Y 269 (269)
T PF00443_consen 203 SECQSNVKYRLVAVIVHYG-SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSS----NSTAYLLFY 269 (269)
T ss_dssp CTHTSSSEEEEEEEEEEES-STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGG----STCEEEEEE
T ss_pred ccccccceeeehhhhcccc-ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhcc----CCceEEEeC
Confidence 0012347899999999999 799999999999743 57999999999999999998755 368999999
No 22
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-50 Score=392.37 Aligned_cols=304 Identities=26% Similarity=0.436 Sum_probs=263.2
Q ss_pred hccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 011408 98 LSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWML 177 (486)
Q Consensus 98 ~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~ 177 (486)
+...+++||+|.|.||||||+||.||.+..||+.+...+... ......++.+|+++|..|+.+..+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~-----p~grdSValaLQr~Fynlq~~~~PvdTtelt-- 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDH-----PRGRDSVALALQRLFYNLQTGEEPVDTTELT-- 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCC-----CCccchHHHHHHHHHHHHhccCCCcchHHhh--
Confidence 344689999999999999999999999999999999876321 2344678999999999999999999998886
Q ss_pred HHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEE
Q 011408 178 LRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKC 257 (486)
Q Consensus 178 l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l 257 (486)
..|+|.....++|||.|||-..|.|.|+..+.++ .....++.+|-|.+.+.+.|..-..++.+.|.||.+++
T Consensus 261 -----rsfgWds~dsf~QHDiqEfnrVl~DnLEksmrgt---~VEnaln~ifVgkmksyikCvnvnyEsarvedfwdiql 332 (1089)
T COG5077 261 -----RSFGWDSDDSFMQHDIQEFNRVLQDNLEKSMRGT---VVENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQL 332 (1089)
T ss_pred -----hhcCcccchHHHHHhHHHHHHHHHHHHHHhhcCC---hhhhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHh
Confidence 3477887788999999999999999999977665 45566999999999999999999999999999999999
Q ss_pred eccCCcchHHHHHHhhhhhh-----hhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccce
Q 011408 258 HISHEVNHLHEGLKHGLKSE-----LEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLE 332 (486)
Q Consensus 258 ~i~~~~~~l~~~l~~~~~~~-----~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~ 332 (486)
++.+. ++|+++++.|++-+ ..+.|++-| -+.|.|..-|.+|||+|.+||+||.||-..+...||+++.+||++
T Consensus 333 NvK~~-knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~e 410 (1089)
T COG5077 333 NVKGM-KNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLE 410 (1089)
T ss_pred cccch-hhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcch
Confidence 99887 58999999998633 334555433 356789999999999999999999999988999999999999999
Q ss_pred eccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCC
Q 011408 333 LDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETH 412 (486)
Q Consensus 333 Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (486)
+||.+|++++..+ ..+
T Consensus 411 iDl~pfld~da~k----------------------------------------------------------------sen 426 (1089)
T COG5077 411 IDLLPFLDRDADK----------------------------------------------------------------SEN 426 (1089)
T ss_pred hccccccCchhhh----------------------------------------------------------------hcc
Confidence 9999999875210 123
Q ss_pred CCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCCC---------------ceEEE
Q 011408 413 LTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGDW---------------HMAYI 476 (486)
Q Consensus 413 ~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~---------------~~aYl 476 (486)
..+.|.|+||++|.|+ .+.|||+|++|. .+|+||+|||+.|++++..+|+...+||+. -+|||
T Consensus 427 ~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYm 505 (1089)
T COG5077 427 SDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYM 505 (1089)
T ss_pred cCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhhe
Confidence 3489999999999995 999999999997 789999999999999999999999988863 37899
Q ss_pred EEEeecc
Q 011408 477 CMYKARS 483 (486)
Q Consensus 477 LfY~r~~ 483 (486)
|+|-|++
T Consensus 506 LvYlRks 512 (1089)
T COG5077 506 LVYLRKS 512 (1089)
T ss_pred eeeehHh
Confidence 9999986
No 23
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-47 Score=352.82 Aligned_cols=218 Identities=34% Similarity=0.515 Sum_probs=192.5
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQ 184 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~ 184 (486)
||.|.||+||+||+||+|++
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999988
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCc-
Q 011408 185 FGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEV- 263 (486)
Q Consensus 185 f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~- 263 (486)
+||||+||+.+||+.|+ +.+.++|++++...++|..|+..+...|+|+.|+++++...
T Consensus 21 ---------~QqDa~Ef~~~ll~~l~------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~~ 79 (230)
T cd02674 21 ---------DQQDAQEFLLFLLDGLH------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSG 79 (230)
T ss_pred ---------hhhhHHHHHHHHHHHHh------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEecccccC
Confidence 39999999999999998 23889999999999999999999999999999999998643
Q ss_pred ----chHHHHHHhhhhhh-h----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccc-ee
Q 011408 264 ----NHLHEGLKHGLKSE-L----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPL-EL 333 (486)
Q Consensus 264 ----~~l~~~l~~~~~~~-~----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~-~L 333 (486)
.+|+++|+.++..+ + ...|++|+....+.++..|.++|++|+|||+||.++. +...|+...|.||. .|
T Consensus 80 ~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l 157 (230)
T cd02674 80 DAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDL 157 (230)
T ss_pred CCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEecccccc
Confidence 48999999998743 3 3689999999999999999999999999999999987 56789999999995 68
Q ss_pred ccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCC
Q 011408 334 DVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHL 413 (486)
Q Consensus 334 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (486)
|+.+|+... ....
T Consensus 158 ~l~~~~~~~-------------------------------------------------------------------~~~~ 170 (230)
T cd02674 158 DLTPYVDTR-------------------------------------------------------------------SFTG 170 (230)
T ss_pred ccccccCcc-------------------------------------------------------------------cCCC
Confidence 988875210 0244
Q ss_pred CeeEEEeEEEEeecCCCCCCceEEEEEccC-CeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 414 TGIYDLVAVLTHKGRSADSGHYVAWVKQES-GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 414 ~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~-~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
...|+|+|||+|.|. .++|||+||+|..+ +.|++|||+.|++++++++. +.+||||||+
T Consensus 171 ~~~Y~L~~vI~H~G~-~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~-------~~~~YlL~Y~ 230 (230)
T cd02674 171 PFKYDLYAVVNHYGS-LNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVV-------SSSAYILFYE 230 (230)
T ss_pred CceEEEEEEEEeeCC-CCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHcc-------CCCceEEEeC
Confidence 578999999999996 49999999999643 99999999999999999983 3789999996
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-46 Score=346.34 Aligned_cols=233 Identities=24% Similarity=0.342 Sum_probs=182.2
Q ss_pred cCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCcc
Q 011408 106 LFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQF 185 (486)
Q Consensus 106 L~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~f 185 (486)
|.|.||+||+||++|+|.++ ++..|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i-----------------------------------------------------~~~~~~F 28 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI-----------------------------------------------------GKINTEF 28 (245)
T ss_pred ceecCCeeeehhHHHHHHHH-----------------------------------------------------hhhhhhc
Confidence 78999999999999988432 2333567
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHHHhhccCC-------CCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEe
Q 011408 186 GQLHNGTFMQQDAEECWTQLLYTLSQSLRSVN-------ASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCH 258 (486)
Q Consensus 186 ~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~-------~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~ 258 (486)
. +++||||||||..||+.|++++.... .........++|++++++.++|..|++.+.+.|+|+.|+|+
T Consensus 29 ~-----~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~ 103 (245)
T cd02673 29 D-----NDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVS 103 (245)
T ss_pred C-----CCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceeccc
Confidence 6 88999999999999999998764321 00111124578999999999999999999999999999999
Q ss_pred ccCC-cchHHHHHHhhhh-hhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccc
Q 011408 259 ISHE-VNHLHEGLKHGLK-SELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVY 336 (486)
Q Consensus 259 i~~~-~~~l~~~l~~~~~-~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~ 336 (486)
++.. ...+++++..+.. +.+++.|++|+.. .+.++.+|.++|++|+|||+||.+..... ..+.++ .+++.
T Consensus 104 i~~~~~~~le~l~~~~~~~~~~e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~------~~~~~~-~~~~~ 175 (245)
T cd02673 104 MIDNKLDIDELLISNFKTWSPIEKDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATS------DYLKKN-EEIMK 175 (245)
T ss_pred cccCCcchHHHHHHHhhcccccCccCCCCCCc-cceeechhhhCChhhEEeeEeeeeccccc------cccccc-ccccc
Confidence 9864 3567777777665 4567899999986 67788889999999999999998754221 122211 23344
Q ss_pred cccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCee
Q 011408 337 DFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGI 416 (486)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (486)
+|+. ....
T Consensus 176 ~~~~------------------------------------------------------------------------~~~~ 183 (245)
T cd02673 176 KYCG------------------------------------------------------------------------TDAK 183 (245)
T ss_pred cccC------------------------------------------------------------------------CCce
Confidence 4332 2257
Q ss_pred EEEeEEEEeecCCCCCCceEEEEEcc--CCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 417 YDLVAVLTHKGRSADSGHYVAWVKQE--SGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 417 Y~L~aVv~H~G~~~~~GHY~a~vk~~--~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
|+|+|||+|.|.++++|||+||+|.. ++.||.|||+.|+++++++|+... ..+||||||+
T Consensus 184 Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~----~~~aYiLFY~ 245 (245)
T cd02673 184 YSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNA----RSSGYLIFYD 245 (245)
T ss_pred EEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhcc----CCceEEEEEC
Confidence 99999999999879999999999972 689999999999999999998421 1689999996
No 25
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-47 Score=386.22 Aligned_cols=303 Identities=32% Similarity=0.435 Sum_probs=248.5
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCC-CCCCchhHHHHHHHHHHHHhcCCC--CCcchHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSN-DVDQSSHMLTVATSELFNDLDKSV--KPVAPMQFWM 176 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~--~~i~p~~~~~ 176 (486)
..+.+||.|+|||||||++||||+.++.||..++...+....+ ........+..++..++..++... .++.|+.|+.
T Consensus 298 ~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~~s~~P~~f~~ 377 (653)
T KOG1868|consen 298 VFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQFSVLPRRFIR 377 (653)
T ss_pred ccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCceecCcHHHHH
Confidence 3468999999999999999999999999998777765555444 223445677777777777776654 7899999999
Q ss_pred HHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC--------------------------------CCCcc
Q 011408 177 LLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS--------------------------------EIPDT 224 (486)
Q Consensus 177 ~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--------------------------------~~~~~ 224 (486)
.+....|.|. ++.|||++||+..+++.||+++...... ..++.
T Consensus 378 ~~~~y~~~~~-----~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~ 452 (653)
T KOG1868|consen 378 VLKRYSPNFS-----GYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSK 452 (653)
T ss_pred HHhhcccccc-----cccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchH
Confidence 9999999998 6789999999999999999998753210 01333
Q ss_pred ccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCcch-----HHHHHHhhhhhh-hh----hcCcccCCcceEe--
Q 011408 225 VKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEVNH-----LHEGLKHGLKSE-LE----KASPALGRSAVYL-- 292 (486)
Q Consensus 225 i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~~~-----l~~~l~~~~~~~-~~----~~c~~c~~~~~~~-- 292 (486)
|.++|.|++++.++|..|++.+.++++|..++|+|+..... |++|+..|..++ ++ +.|++|+......
T Consensus 453 i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~l 532 (653)
T KOG1868|consen 453 IGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTL 532 (653)
T ss_pred HHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCccccccc
Confidence 89999999999999999999999999999999999755433 999999998633 33 6899999998875
Q ss_pred eeeEecccCCceEEEEEEEEEeccccccccccccccccc-eeccccccChhhhccccchhhHhhhHhhcccCcccCCCCC
Q 011408 293 KESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPL-ELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSS 371 (486)
Q Consensus 293 k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (486)
|+..|.+||++|+|||+||.++. +...|....|.||. ..++..+...
T Consensus 533 K~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~~~------------------------------ 580 (653)
T KOG1868|consen 533 KKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRFAE------------------------------ 580 (653)
T ss_pred ceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhccc------------------------------
Confidence 99999999999999999999886 45678888888887 4444432211
Q ss_pred CCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEee
Q 011408 372 NSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYD 450 (486)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~n 450 (486)
..+....|+|+|||+|.| +.++|||+|||+. ..+.|+.||
T Consensus 581 --------------------------------------~~~~~~~Y~L~aVv~H~G-tl~sGHYta~~~~~~~~~W~~fd 621 (653)
T KOG1868|consen 581 --------------------------------------KGNNPKSYRLYAVVNHSG-TLNSGHYTAYVYKNEKQRWFTFD 621 (653)
T ss_pred --------------------------------------cCCCccceeeEEEEeccC-cccCCceEEEEeecCCCceEEec
Confidence 023335699999999999 7999999999986 478999999
Q ss_pred CCCceecChhhhhhccCCCCCceEEEEEEeeccCC
Q 011408 451 DDNPLPQREEDITKLSGGGDWHMAYICMYKARSIS 485 (486)
Q Consensus 451 D~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~~~~ 485 (486)
|+.|+.++..+|.. +.||||||+|.+++
T Consensus 622 Ds~Vs~~~~~~~~~-------s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 622 DSEVSPISETDVGS-------SSAYILFYERLGIF 649 (653)
T ss_pred CeeeeccccccccC-------CCceEEEeecCCcc
Confidence 99999888888773 78999999998764
No 26
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=360.76 Aligned_cols=302 Identities=26% Similarity=0.426 Sum_probs=257.2
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC--CCcchHHHHHHHH
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV--KPVAPMQFWMLLR 179 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~i~p~~~~~~l~ 179 (486)
..+||.|+||||+||++||.|.+.|..+...+...+... .......++.+++.++|..++... .++.|..++...+
T Consensus 160 ~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~--~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~l~~~~ 237 (492)
T KOG1867|consen 160 GLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKE--PSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFELLNLVW 237 (492)
T ss_pred cccccccccHHHHHHHHHHHhhccchhhccchhhhcccC--CCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHHHHHHH
Confidence 468999999999999999999999999998887665521 112337899999999999998765 7899999999999
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhcc--------CCCCCCCccccccceEEEEEEEEeCCCCCeeeecCc
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRS--------VNASEIPDTVKALFGIDIVSRVHCQESGEESSETES 251 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~--------~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~ 251 (486)
+..|.+. +++||||+||+..+++.++.+... ........+++..|.|.+...++|..|+..+...++
T Consensus 238 k~~~~~~-----g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dp 312 (492)
T KOG1867|consen 238 KHSPNLA-----GYEQQDAHEFLIALLDRLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDP 312 (492)
T ss_pred HhCcccc-----cccccchHHHHHHhcccccccccccccccccccCCcccccccceeecceeccceeehhhcceeeeccC
Confidence 9999998 799999999999999999988711 112244677999999999999999999999999999
Q ss_pred eEEEEEeccCCc---------chHHHHHHhhhh-----hhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccc
Q 011408 252 IYALKCHISHEV---------NHLHEGLKHGLK-----SELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRES 317 (486)
Q Consensus 252 ~~~l~l~i~~~~---------~~l~~~l~~~~~-----~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~ 317 (486)
|++|+|.|+... .++.+++..+.. ......|..|+.+...+++..|.++|.+|.+|++||.|....
T Consensus 313 f~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~ 392 (492)
T KOG1867|consen 313 FMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATG 392 (492)
T ss_pred ccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccc
Confidence 999999997442 457777776653 233458999999999999999999999999999999998864
Q ss_pred cccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccc
Q 011408 318 NQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVA 397 (486)
Q Consensus 318 ~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (486)
.. .|++..|.||..|+|.+|+..+..
T Consensus 393 ~~-~ki~~~v~fp~~l~m~p~~~~~~~----------------------------------------------------- 418 (492)
T KOG1867|consen 393 AR-EKIDSYVSFPVLLNMKPYCSSEKL----------------------------------------------------- 418 (492)
T ss_pred cc-cccCcccccchhhcCCcccccccc-----------------------------------------------------
Confidence 44 399999999999999999986210
Q ss_pred cCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEE
Q 011408 398 SSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYIC 477 (486)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlL 477 (486)
.....++..|+|.|||+|.|. .++|||+||.| ..+.|++|||+.|+.++.++|++ ..||+|
T Consensus 419 ----------~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r-~~~~~~~~dDs~v~~~s~~eVl~-------~~aylL 479 (492)
T KOG1867|consen 419 ----------KSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRR-QSGGWFKCDDSTVTKVSEEEVLS-------SQAYLL 479 (492)
T ss_pred ----------ccCCCCCceEEEEEEEEeccC-CCCCceEEEEE-eCCCcEEEcCeEEEEeeHHHhhh-------chhhhe
Confidence 000244689999999999996 99999999999 89999999999999999999998 789999
Q ss_pred EEeecc
Q 011408 478 MYKARS 483 (486)
Q Consensus 478 fY~r~~ 483 (486)
||.+..
T Consensus 480 FY~~~~ 485 (492)
T KOG1867|consen 480 FYTQEQ 485 (492)
T ss_pred ehhHHh
Confidence 998753
No 27
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-44 Score=337.22 Aligned_cols=362 Identities=20% Similarity=0.339 Sum_probs=259.7
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-----CCcchHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-----KPVAPMQFW 175 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-----~~i~p~~~~ 175 (486)
+..+||.|+||+||+||++|.|+....+..-+....... ...-..+..++.|+|.+|...|.... ..++|..|+
T Consensus 301 s~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~-~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 301 SPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFE-ICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred CCccceEecCCeeeHHHHHHHHhccccchhhhhhhccce-eeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 347899999999999999999999988877665443221 12223567899999999999987654 779999999
Q ss_pred HHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEE
Q 011408 176 MLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYAL 255 (486)
Q Consensus 176 ~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l 255 (486)
..++..+|.|+ .++||||+|||.+||+.|+...... ..+.|.++|.+.+..++.|..|+..+.+.++...+
T Consensus 380 ~~igq~h~eFg-----~~~QQDA~EFLlfLL~kirk~~~S~----~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i 450 (749)
T COG5207 380 MLIGQDHPEFG-----KFAQQDAHEFLLFLLEKIRKGERSY----LIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMI 450 (749)
T ss_pred HHHcCCchhhh-----hhhhhhHHHHHHHHHHHHhhccchh----cCCCcchhhhhhhcceecccccccccccccceEEE
Confidence 99999999998 7899999999999999999755432 35558899999999999999999999999999999
Q ss_pred EEeccCC--cchHHHHHHhhhh-hhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccc-
Q 011408 256 KCHISHE--VNHLHEGLKHGLK-SELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPL- 331 (486)
Q Consensus 256 ~l~i~~~--~~~l~~~l~~~~~-~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~- 331 (486)
.+++.+. ..++..+++.||. .++++.|+.|+.+..+.++..|.+||++||+|..||.+.. -+..|+..++.+..
T Consensus 451 ~i~le~n~E~~di~~~v~a~f~pdtiE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lqn--y~v~kls~pi~~~~D 528 (749)
T COG5207 451 CIFLEGNDEPQDIRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQN--YKVEKLSDPIEMRSD 528 (749)
T ss_pred EeecccCcchhhHHHHHHheECccceeeehhhhcCcccccccchhhccCceeEEecceeeccc--eeehhccCceEEccc
Confidence 9988654 4578899999987 5688999999999999999999999999999999998765 34677877777765
Q ss_pred -eeccccccChhhh----------ccccchhhHhhhHhhcccCcccCCCCCC---CCCCccccc-------ccc------
Q 011408 332 -ELDVYDFCSDDLR----------KKLDAPRQKLRDEEGKKLGLKGGEKSSN---SKDNDVKMT-------EAE------ 384 (486)
Q Consensus 332 -~Ldl~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~------ 384 (486)
.+++..|++..-. +.+.+.+..++.+.+......+...... ..+...+|. +.+
T Consensus 529 ~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~ 608 (749)
T COG5207 529 DMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFV 608 (749)
T ss_pred cccchhhHhhccCCcccccCCccccccCchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCC
Confidence 7888999876211 1122334444444333332222211100 000000000 000
Q ss_pred ---CCCC------------------------------CCCCCcc--------cccCCCCCCCC------CCcCCCCCeeE
Q 011408 385 ---GSAS------------------------------NGSGESS--------VASSQDGVTTD------TDKETHLTGIY 417 (486)
Q Consensus 385 ---~~~~------------------------------~~~~~~~--------~~~~~~~~~~~------~~~~~~~~~~Y 417 (486)
.-+. +.+.+.. .+.+++...+. .+........|
T Consensus 609 ~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PY 688 (749)
T COG5207 609 PPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPY 688 (749)
T ss_pred CCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcc
Confidence 0000 0000000 11111111100 11112233459
Q ss_pred EEeEEEEeecCCCCCCceEEEEEc---cCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEee
Q 011408 418 DLVAVLTHKGRSADSGHYVAWVKQ---ESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKA 481 (486)
Q Consensus 418 ~L~aVv~H~G~~~~~GHY~a~vk~---~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r 481 (486)
.|.|||||.|.++.+|||++|||. ..-+|+.|||+++..++.-++++ .++||+||+|
T Consensus 689 aLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k-------~nGYiylf~R 748 (749)
T COG5207 689 ALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLK-------DNGYIYLFKR 748 (749)
T ss_pred cceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHh-------hCCeEEEEec
Confidence 999999999999999999999997 45689999999998887766666 6799999987
No 28
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-42 Score=326.96 Aligned_cols=242 Identities=37% Similarity=0.543 Sum_probs=202.7
Q ss_pred ccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCc
Q 011408 105 GLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQ 184 (486)
Q Consensus 105 GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~ 184 (486)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC-----CCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 185 FGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA-----SEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 185 f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~-----~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
.||||+|||..+|+.|+.++..... ....+.+.++|.+.+...+.|..|+..+.....+..+.+++
T Consensus 21 ---------~q~Da~E~l~~ll~~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~ 91 (255)
T cd02257 21 ---------EQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL 91 (255)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeec
Confidence 3999999999999999999875321 23356799999999999999999998877777777778877
Q ss_pred cCC---cchHHHHHHhhhhhhhh--hcCcccC--CcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccce
Q 011408 260 SHE---VNHLHEGLKHGLKSELE--KASPALG--RSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLE 332 (486)
Q Consensus 260 ~~~---~~~l~~~l~~~~~~~~~--~~c~~c~--~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~ 332 (486)
+.. ..+|+++|+.++..+.. ..|..|+ ....+.++..|.++|++|+|+++||.++.. +...|+...|.||..
T Consensus 92 ~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~ 170 (255)
T cd02257 92 PVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLE 170 (255)
T ss_pred cCCCCCCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCc
Confidence 765 47999999999986543 4788998 677889999999999999999999998864 456899999999999
Q ss_pred eccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCC
Q 011408 333 LDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETH 412 (486)
Q Consensus 333 Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (486)
+++..++.... .......
T Consensus 171 l~~~~~~~~~~--------------------------------------------------------------~~~~~~~ 188 (255)
T cd02257 171 LDLSPYLSEGE--------------------------------------------------------------KDSDSDN 188 (255)
T ss_pred ccCcccccccc--------------------------------------------------------------ccccccC
Confidence 99998775310 0011134
Q ss_pred CCeeEEEeEEEEeecCCCCCCceEEEEEccC-CeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 413 LTGIYDLVAVLTHKGRSADSGHYVAWVKQES-GKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 413 ~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~-~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
....|+|+|||+|.|.+.++|||+||+|... +.|++|||..|++++++++... ++.+.+||||||+
T Consensus 189 ~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~--~~~~~~~yll~Y~ 255 (255)
T cd02257 189 GSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEF--GSLSSSAYILFYE 255 (255)
T ss_pred CCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhc--cCCCCceEEEEEC
Confidence 4578999999999998779999999999744 9999999999999999999653 3345899999996
No 29
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=345.43 Aligned_cols=331 Identities=20% Similarity=0.281 Sum_probs=247.9
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLR 179 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~ 179 (486)
..+++||+|..-|||+|+.+|+|+..|.|++.+..-. ..++...++.
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~-----------------------------~~~~et~dlt---- 130 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE-----------------------------NDSLETKDLT---- 130 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC-----------------------------cccccchhhH----
Confidence 3478999999999999999999999999999776221 1233333433
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
..|+|.....++|||.+|+-..++|.|+--++++ +....|.+++.|++..-+.|.+|+.++++.+.|++|.|++
T Consensus 131 ---~sfgw~s~ea~~qhdiqelcr~mfdalehk~k~t---~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v 204 (1203)
T KOG4598|consen 131 ---QSFGWTSNEAYDQHDVQELCRLMFDALEHKWKGT---EHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAV 204 (1203)
T ss_pred ---hhcCCCcchhhhhhhHHHHHHHHHHHHHhhhcCc---hHHHHHHHHhcchHHHHHHHHHcCccccccceeecccccc
Confidence 3478888888999999999999999999888765 3455699999999999999999999999999999999988
Q ss_pred cC-----CcchHHHHHHhhhhhh-----hhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccc
Q 011408 260 SH-----EVNHLHEGLKHGLKSE-----LEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDY 329 (486)
Q Consensus 260 ~~-----~~~~l~~~l~~~~~~~-----~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~f 329 (486)
.. .-.+++++|..|+..+ ..+.|++|++++.+.|..+|.++|-+|+|||+||.||..+..+.|+++++.|
T Consensus 205 ~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tf 284 (1203)
T KOG4598|consen 205 KPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTF 284 (1203)
T ss_pred cCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccC
Confidence 42 2347999999997644 4478999999999999999999999999999999999999999999999999
Q ss_pred cceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCC-CCCCccccccccCCCC------CCCCCcccc-cCCC
Q 011408 330 PLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSN-SKDNDVKMTEAEGSAS------NGSGESSVA-SSQD 401 (486)
Q Consensus 330 p~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~ 401 (486)
|..|||..|+..+-...... ...+.. +.+. ..+++..|.+.+-+.- +...+.+.. ....
T Consensus 285 p~~l~ln~~in~~~~s~~~~---~~~~~~----------~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~ 351 (1203)
T KOG4598|consen 285 PDVLDLNDYVNKEKRSTTSS---AWQQIG----------KNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQ 351 (1203)
T ss_pred cccccHHHhhhhccCCcchh---Hhhhcc----------cccccccccccccCCCCcccCcccccCcccccCccccccCC
Confidence 99999999987642211110 000000 0000 1122222222211100 001111100 0000
Q ss_pred CC---CCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCC------C
Q 011408 402 GV---TTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGD------W 471 (486)
Q Consensus 402 ~~---~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~------~ 471 (486)
.. ...+-....+...|+|+||.+|.| ++.+|||+||+|+ ++++||+|||.+|+-++.++|.+..||.. .
T Consensus 352 ~~~~~~~~~~~~~sg~~~yelf~imihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~ 430 (1203)
T KOG4598|consen 352 PIDHAAVDDIVKTSGDNVYELFSVMVHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSN 430 (1203)
T ss_pred cCchhhhhhHhhcCCccHHHhhhhheecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccC
Confidence 00 011122245567899999999999 6999999999999 89999999999999999999998777743 3
Q ss_pred ceEEEEEEeecc
Q 011408 472 HMAYICMYKARS 483 (486)
Q Consensus 472 ~~aYlLfY~r~~ 483 (486)
.+||||+|+|+|
T Consensus 431 tnaymlmyr~id 442 (1203)
T KOG4598|consen 431 TNAYMLMYRRID 442 (1203)
T ss_pred cchhhhhhhhcC
Confidence 689999999987
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-42 Score=339.87 Aligned_cols=152 Identities=28% Similarity=0.349 Sum_probs=112.0
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCC---CC-----------CCchhHHHHHHHHHHHHhcCCCC
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSN---DV-----------DQSSHMLTVATSELFNDLDKSVK 167 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~---~~-----------~~~~~~~~~~l~~l~~~l~~~~~ 167 (486)
..+||.|+|||||+|||+|+|..+|.||+.|.........- .+ ......++.+|..|..+......
T Consensus 204 ~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ks 283 (877)
T KOG1873|consen 204 IVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTKS 283 (877)
T ss_pred cccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccCC
Confidence 35799999999999999999999999999998876543111 00 13346778888886665566669
Q ss_pred CcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccC------------------------------C
Q 011408 168 PVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSV------------------------------N 217 (486)
Q Consensus 168 ~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~ 217 (486)
.++|+.|...+....|+|. +++||||||+|+.|||.|..+--.. +
T Consensus 284 v~~Pr~lF~~~C~k~pqF~-----g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe~ 358 (877)
T KOG1873|consen 284 VITPRTLFGQFCSKAPQFR-----GYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYEP 358 (877)
T ss_pred ccCHHHHHHHHHHhCCccc-----ccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhcccc
Confidence 9999999999999999999 9999999999999999998663210 0
Q ss_pred CCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 218 ASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 218 ~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
.......+...|.+...+++.|..|. .+...+.|...++||
T Consensus 359 f~~~~~~vp~~~~~~~~s~~~~~~~~-vss~~~s~~~~t~pv 399 (877)
T KOG1873|consen 359 FKDLSLPVPLSFNGPLTSQIECQACD-VSSVHESFLSETLPV 399 (877)
T ss_pred cccCCcccccccCCCcccchhhhccc-eeccchhhccccccc
Confidence 00112234566777777777777766 555566666666665
No 31
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-40 Score=364.78 Aligned_cols=311 Identities=30% Similarity=0.416 Sum_probs=265.6
Q ss_pred hhhhhhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcch
Q 011408 93 EEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAP 171 (486)
Q Consensus 93 ~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p 171 (486)
+..+.+..+.|+||.|+||||||||+||+||.+|.||+.+.++.... ....+...+..+|++||..|+.+. .+|.+
T Consensus 160 ~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~---~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt 236 (1093)
T KOG1863|consen 160 PYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFT---GHEDPRRSIPLALQRLFYELQMSKRKYVDT 236 (1093)
T ss_pred hhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCC---CcccccchHHHHHHHHHHHHhhcCCCCcCc
Confidence 44446667788999999999999999999999999999999988522 223455669999999999999998 59999
Q ss_pred HHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCc
Q 011408 172 MQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETES 251 (486)
Q Consensus 172 ~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~ 251 (486)
..+...+.... ...++|||++||...|++.|+..+.... ....+.++|.|.+.+.+.|..|...+...|.
T Consensus 237 ~~~~~~~~~~~-------~~~~~QqDvqEf~~~l~d~LE~~~~~~~---~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~ 306 (1093)
T KOG1863|consen 237 SELTKSLGWDS-------NDSFEQQDVQEFLTKLLDWLEDSMIDAK---VENTLQDLFTGKMKSVIKCIDVDFESSRSES 306 (1093)
T ss_pred hhhhhhhhccc-------ccHHhhhhHHHHHHHHHHHHHhhccchh---hhhhhhhhhcCCcceEEEEEeeeeecccccc
Confidence 99998776543 2256899999999999999999987653 3566999999999999999999999999999
Q ss_pred eEEEEEeccCCcchHHHHHHhhhhhhhh----hcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccc
Q 011408 252 IYALKCHISHEVNHLHEGLKHGLKSELE----KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKV 327 (486)
Q Consensus 252 ~~~l~l~i~~~~~~l~~~l~~~~~~~~~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v 327 (486)
|+++.+++.+.. +|.++|..|+..++. .+|..|.....+.+...+.+||++|.|+|+||.|+..++...|+++.+
T Consensus 307 f~d~ql~~~g~~-nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~ 385 (1093)
T KOG1863|consen 307 FLDLQLNGKGVK-NLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKF 385 (1093)
T ss_pred ccCccccccchh-hHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhcc
Confidence 999999998875 599999999984433 379999999999999999999999999999999999889999999999
Q ss_pred cccceeccccccCh-hhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCC
Q 011408 328 DYPLELDVYDFCSD-DLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTD 406 (486)
Q Consensus 328 ~fp~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
.||..|+|.+|+.. +.
T Consensus 386 ~fp~~i~~d~~~~~~~~--------------------------------------------------------------- 402 (1093)
T KOG1863|consen 386 EFPLIIDMDRYLSRFKA--------------------------------------------------------------- 402 (1093)
T ss_pred CCccccccchhccccch---------------------------------------------------------------
Confidence 99999999998763 00
Q ss_pred CCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCCC---c------eEEE
Q 011408 407 TDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGDW---H------MAYI 476 (486)
Q Consensus 407 ~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~---~------~aYl 476 (486)
......+.|+|.||.+|.| ...+|||++|++. ..++|++|||..|+.++..+++....|++. . .||+
T Consensus 403 --~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 479 (1093)
T KOG1863|consen 403 --EESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYM 479 (1093)
T ss_pred --hhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcce
Confidence 0011226899999999977 5999999999997 789999999999999999999887777642 2 2899
Q ss_pred EEEeecc
Q 011408 477 CMYKARS 483 (486)
Q Consensus 477 LfY~r~~ 483 (486)
|+|.|.+
T Consensus 480 lv~~~~s 486 (1093)
T KOG1863|consen 480 LVYIRDS 486 (1093)
T ss_pred EEEEecC
Confidence 9999876
No 32
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=345.23 Aligned_cols=382 Identities=25% Similarity=0.353 Sum_probs=300.9
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC-----CcCC--CCccccccCcCCCCeEEEeeccccccCCCCCCC---
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG-----GLLK--DDSDWSMLGVKQGQRLMMMGTADEIVKAPEKGP--- 85 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~-----~~l~--d~~~l~~~~i~~~~~i~l~g~~~~~~~~p~~~~--- 85 (486)
+.....+|...+-..+....++|.+.-++|... .++. |...+....+..++.+.+ ........+|....
T Consensus 133 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 211 (842)
T KOG1870|consen 133 LALQADSTCPPLTSYFLESGGLPRTKFAIWASYNEKYLSLWYKSDPGKLVPTVLFQGRKMVL-EVFRKFASQPSDMTLRC 211 (842)
T ss_pred eccccccCccHHHHHHHHhcCCCcccchhhhhhhHhhhcccccccccccccccccccceEEe-eeccccccchhhhchhh
Confidence 456678888999999999999999977777211 1111 113444445555555444 33322222222111
Q ss_pred -----------ccccCCch------hhhhhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCC--CCCCC
Q 011408 86 -----------VFVEDLPE------EEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRS--NDVDQ 146 (486)
Q Consensus 86 -----------~~~~~~~~------~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~--~~~~~ 146 (486)
.-....+. ........+.+||.|+||||||||.+|+|.+.++++++++.......+ ..+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~ 291 (842)
T KOG1870|consen 212 WMDWLSERDPDASGTKETRVDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLG 291 (842)
T ss_pred ccccccccccccCCCcccccccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCc
Confidence 00011111 112334567899999999999999999999999999999876655522 23345
Q ss_pred chhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC------
Q 011408 147 SSHMLTVATSELFNDLDKSV-KPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS------ 219 (486)
Q Consensus 147 ~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~------ 219 (486)
....+..++..+...++... ..+.|..+...+....++|. ++.|||.+||+.+++|.+|+.+.....+
T Consensus 292 ~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~-----g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~ 366 (842)
T KOG1870|consen 292 SAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFS-----GYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGK 366 (842)
T ss_pred ccceechhhhhHHHHhccCCccccCchhhhhhhhhcccccc-----CcccccchhhhhHHhhhhhHHhhccCCcCccccc
Confidence 66788999999999999887 47999999999999988888 8999999999999999999998754322
Q ss_pred --------------------CCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCCcc---------------
Q 011408 220 --------------------EIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHEVN--------------- 264 (486)
Q Consensus 220 --------------------~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~~--------------- 264 (486)
...+.+.++|.+..++.+.|+.|+..++++++|.+|++|++....
T Consensus 367 d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~ 446 (842)
T KOG1870|consen 367 DSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRK 446 (842)
T ss_pred ccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCC
Confidence 014569999999999999999999999999999999999974322
Q ss_pred --------------------------------------------------------------------------------
Q 011408 265 -------------------------------------------------------------------------------- 264 (486)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (486)
T Consensus 447 p~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~ 526 (842)
T KOG1870|consen 447 PGALGVSVAKNGRIRDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAII 526 (842)
T ss_pred hhheeeeccccchHHHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011408 265 -------------------------------------------------------------------------------- 264 (486)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (486)
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s 606 (842)
T KOG1870|consen 527 VVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAES 606 (842)
T ss_pred EEeeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011408 265 -------------------------------------------------------------------------------- 264 (486)
Q Consensus 265 -------------------------------------------------------------------------------- 264 (486)
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~ 686 (842)
T KOG1870|consen 607 SSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGA 686 (842)
T ss_pred cccccCCChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhcccccccccccccccccccc
Confidence
Q ss_pred ----------hHHHHHHhhhhhhh-h----hcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccc
Q 011408 265 ----------HLHEGLKHGLKSEL-E----KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDY 329 (486)
Q Consensus 265 ----------~l~~~l~~~~~~~~-~----~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~f 329 (486)
+|++||..|++.+. . ++|+.|.....|+|+..+++||++|+|||+||.|.+.. ..|+...|.|
T Consensus 687 ~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~--~~k~~~~v~f 764 (842)
T KOG1870|consen 687 SRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRES--SSKVKTKVEF 764 (842)
T ss_pred ccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechh--hhhhCccccC
Confidence 67788998887443 2 58999999999999999999999999999999999854 5899999999
Q ss_pred cc-eeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCC
Q 011408 330 PL-ELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTD 408 (486)
Q Consensus 330 p~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (486)
|. .||+++|+...
T Consensus 765 Pi~~ld~s~~~~~~------------------------------------------------------------------ 778 (842)
T KOG1870|consen 765 PLGSLDLSEFVVNK------------------------------------------------------------------ 778 (842)
T ss_pred CCcCCCcchhhccC------------------------------------------------------------------
Confidence 98 89999988641
Q ss_pred cCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEeecc
Q 011408 409 KETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARS 483 (486)
Q Consensus 409 ~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~~ 483 (486)
. ...|+|+||++|+|. +.+|||+||.|. .+++||.|||+.|++++++++.. ..||+|||+|++
T Consensus 779 ---~-~~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t-------~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 779 ---E-QVLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDT-------EAAYVLFYRRLD 842 (842)
T ss_pred ---c-cceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhccc-------ccceEEEEEecC
Confidence 1 178999999999995 999999999998 79999999999999999999987 689999999975
No 33
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.1e-38 Score=295.32 Aligned_cols=235 Identities=20% Similarity=0.192 Sum_probs=187.7
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhh
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKK 181 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~ 181 (486)
..+||.|.|.|||+||+||+|+++|+||+++.... ..+....|++|+|..||. .+
T Consensus 14 ~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~~------~~~~~~~~l~~el~~lfs------------~~------- 68 (268)
T cd02672 14 NYAGLENHITNSYCNSLLQLLYFIPPFRNFTAIIL------VACPKESCLLCELGYLFS------------TL------- 68 (268)
T ss_pred cccccccCCccchHHHHHHHHHhcHHHHHHHHhhc------ccCCcCccHHHHHHHHHH------------HH-------
Confidence 58999999999999999999999999999833221 224567899999999991 11
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccC
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISH 261 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~ 261 (486)
.+-|-.+|++.+..+.... + ..|+..+.+.++++.|+++++.
T Consensus 69 ----------------iq~F~~fll~~i~~~~~~~------------~----------~~C~~~s~~~~~~~~LsLpip~ 110 (268)
T cd02672 69 ----------------IQNFTRFLLETISQDQLGT------------P----------FSCGTSRNSVSLLYTLSLPLGS 110 (268)
T ss_pred ----------------HHHHHHHHHHHHHHHhccc------------C----------CCCCceeeccccceeeeeecCc
Confidence 2346677888888665432 1 6899999999999999999985
Q ss_pred C----cchHHHHHHhhhhhhh--hhcCcccCCcceEeeeeEecccCC----ceEEEEEEEEEeccc-----ccccccccc
Q 011408 262 E----VNHLHEGLKHGLKSEL--EKASPALGRSAVYLKESCINGLPR----YLTIQFVRFFWKRES-----NQKAKILRK 326 (486)
Q Consensus 262 ~----~~~l~~~l~~~~~~~~--~~~c~~c~~~~~~~k~~~i~~lP~----~L~i~l~Rf~~~~~~-----~~~~Ki~~~ 326 (486)
. ..+|.++|+.+++++. ...|+.|++...+.++..|.++|+ +|+||++||.++... ....|+...
T Consensus 111 ~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~ 190 (268)
T cd02672 111 TKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNK 190 (268)
T ss_pred cccccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCe
Confidence 3 3589999999997543 368999999999999999999999 999999999865421 223567778
Q ss_pred ccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCC
Q 011408 327 VDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTD 406 (486)
Q Consensus 327 v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (486)
|.||..+++......+
T Consensus 191 v~f~~~~~~~~~~~~~---------------------------------------------------------------- 206 (268)
T cd02672 191 VSPKAIDHDKLVKNRG---------------------------------------------------------------- 206 (268)
T ss_pred ecccccccchhhhccC----------------------------------------------------------------
Confidence 8888776654432110
Q ss_pred CCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEcc-----CCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEe
Q 011408 407 TDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQE-----SGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 407 ~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~-----~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~ 480 (486)
......|+|+|||+|.|.+.++|||+||||.. +++||+|||..|+++++ .||||||+
T Consensus 207 ----~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~-------------~aYiLfY~ 268 (268)
T cd02672 207 ----QESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE-------------LAYILLYQ 268 (268)
T ss_pred ----CCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc-------------hheeeecC
Confidence 12336899999999999766999999999963 68999999999999987 49999995
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5e-37 Score=280.55 Aligned_cols=199 Identities=21% Similarity=0.247 Sum_probs=141.8
Q ss_pred CchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccC--CcchHHHHHHh
Q 011408 195 QQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISH--EVNHLHEGLKH 272 (486)
Q Consensus 195 QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~--~~~~l~~~l~~ 272 (486)
|||+.||+++|++.|...+... .-++|++--..+-. + +...|.++.|.+|... ...+|++||+.
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~~--------~~~~~~~g~~~~~~-----~-~~~~e~~l~l~ip~~~~~~~~tLedcLe~ 88 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLEP--------KVDIIHGGKKDQDD-----D-KLVNERLLQIPVPDDDDGGGITLEQCLEQ 88 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhhH--------HHHHHhcCcccccc-----c-cccccceEEeecccCCCCCcCCHHHHHHH
Confidence 9999999999999998755433 55666653221111 1 4456777777666543 34699999999
Q ss_pred hhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccccccChhhhccccchhh
Q 011408 273 GLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQ 352 (486)
Q Consensus 273 ~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~ 352 (486)
|+.+++ |.++|++|+|||+||.|+. +...|+++.|.||..|||.+|+.+...+.-.
T Consensus 89 ~~~~e~------------------i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~---- 144 (241)
T cd02670 89 YFNNSV------------------FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSK---- 144 (241)
T ss_pred Hhchhh------------------hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccc----
Confidence 998775 8999999999999999987 5678999999999999999998764211000
Q ss_pred HhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCC
Q 011408 353 KLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADS 432 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~ 432 (486)
. .. ...... .............|+|+|||+|.|.++++
T Consensus 145 -----------------~--~~------~~~~~~-----------------~~~~~~~~~~~~~Y~L~aVi~H~G~s~~s 182 (241)
T cd02670 145 -----------------C--QL------ECRVCY-----------------DDKDFSPTCGKFKLSLCSAVCHRGTSLET 182 (241)
T ss_pred -----------------c--cc------cccccc-----------------ccccccCCCCCeEEEEEEEEEeCCCCCCC
Confidence 0 00 000000 00001112345789999999999988999
Q ss_pred CceEEEEEccC------------CeEEEeeCCCceecChh------hhhhccCCCCCceEEEEEEe
Q 011408 433 GHYVAWVKQES------------GKWIEYDDDNPLPQREE------DITKLSGGGDWHMAYICMYK 480 (486)
Q Consensus 433 GHY~a~vk~~~------------~~W~~~nD~~V~~~~~~------~v~~~~~g~~~~~aYlLfY~ 480 (486)
|||+||||... +.|++|||..|+.+... .+.. .+||||||+
T Consensus 183 GHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~-------~~aYmLFYq 241 (241)
T cd02670 183 GHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLL-------EDPYMLFYQ 241 (241)
T ss_pred cCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhccc-------CCceEEEeC
Confidence 99999999843 79999999998886543 2222 689999996
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.7e-35 Score=284.93 Aligned_cols=276 Identities=24% Similarity=0.265 Sum_probs=229.4
Q ss_pred cccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhc-CCC-CCcchHHHHHHHHhh
Q 011408 104 AGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLD-KSV-KPVAPMQFWMLLRKK 181 (486)
Q Consensus 104 ~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~-~~i~p~~~~~~l~~~ 181 (486)
.||.|.+++||+||+||+|+++|++|+.++.+. . +....|++|+|+-||+.|. .+. ..+.+..|+.+++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~~ 73 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E------CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSWI 73 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C------CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhcC
Confidence 599999999999999999999999999999876 2 4677999999999999999 655 788999999998876
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCC----------CCCCccccccceEEEEEEEEeCCCCCeeeecCc
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNA----------SEIPDTVKALFGIDIVSRVHCQESGEESSETES 251 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~----------~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~ 251 (486)
-...+ .+.|+|+++|+.+|+++|+.++..... ....+.+.++|+.......+|..|++++.+.+.
T Consensus 74 ~~a~~-----l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~ 148 (295)
T PF13423_consen 74 PEAAA-----LGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHESVKESS 148 (295)
T ss_pred HHHHh-----cchhHHHHHHHHHHHHHHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeEEeecc
Confidence 21122 346999999999999999999876532 123566999999999999999999999999998
Q ss_pred eEEEEEeccC--CcchHHHHHHhhhhhhhh--hcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccc
Q 011408 252 IYALKCHISH--EVNHLHEGLKHGLKSELE--KASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKV 327 (486)
Q Consensus 252 ~~~l~l~i~~--~~~~l~~~l~~~~~~~~~--~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v 327 (486)
.+.+.+..+. ...++.+.|+.++..+.. ..|++|++......+..|.++|+||.|.++|+..+. ....|....+
T Consensus 149 ~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~--~w~~~~~~~~ 226 (295)
T PF13423_consen 149 TLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEE--FWPKKNWLKI 226 (295)
T ss_pred eeeeeccCCCCCccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcEEEEEccCCCccc--ccccccCCce
Confidence 8888877765 345899999999974433 589999999999999999999999999999999883 2378889999
Q ss_pred cccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCC
Q 011408 328 DYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDT 407 (486)
Q Consensus 328 ~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (486)
.+|..+++..++.++....
T Consensus 227 ~ip~~i~~~~~~~~~~~~~------------------------------------------------------------- 245 (295)
T PF13423_consen 227 WIPPSINLPHFIADDSQSD------------------------------------------------------------- 245 (295)
T ss_pred ecceeeecccccccccccc-------------------------------------------------------------
Confidence 9999999998876531100
Q ss_pred CcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEcc---CCeEEEeeCCCc
Q 011408 408 DKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQE---SGKWIEYDDDNP 454 (486)
Q Consensus 408 ~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~---~~~W~~~nD~~V 454 (486)
........+|+|.|+|||.|.+.++|||||+||.. +++||.|||..|
T Consensus 246 ~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 246 LEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 00135568999999999999999999999999963 479999999765
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=282.14 Aligned_cols=304 Identities=28% Similarity=0.358 Sum_probs=241.2
Q ss_pred CCCcccCccccchhhh--hHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC---CCcchHHHH
Q 011408 101 GHSAGLFNLGNTCYMN--STIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV---KPVAPMQFW 175 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~N--SvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~i~p~~~~ 175 (486)
...-|..|.+++|+.| ++.|.+..+..+++.......... ........+...+..+|....... ..+.|..|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~~~~ 307 (587)
T KOG1864|consen 230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLK--RSYIIKEELLTCLLDLFSSISSRKKLVGRISPTRFI 307 (587)
T ss_pred ccccCccccCccccccchhhHHHHHhhhhhcccccchhhccc--chhhhhHHHHHHhhhhccchhhhcccccccCcchhh
Confidence 3567999999999999 999999999999965554331111 000123445555556665443332 778999999
Q ss_pred HHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCC------CC-----------------------CCCcccc
Q 011408 176 MLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVN------AS-----------------------EIPDTVK 226 (486)
Q Consensus 176 ~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~------~~-----------------------~~~~~i~ 226 (486)
..+++....|. .++||||+||+.++++.+++.+.... .. .....+.
T Consensus 308 ~~~~~~~~~f~-----~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~ 382 (587)
T KOG1864|consen 308 SDLIKENELFT-----NGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVS 382 (587)
T ss_pred hhhhhcCCccC-----chhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHH
Confidence 99999988888 88999999999999999988764221 00 0234599
Q ss_pred ccceEEEEEEEEeCCCCCeeeecCceEEEEEeccC-CcchHHHHHHhhhh-----hhhhhcCcccCCcceEeeeeEeccc
Q 011408 227 ALFGIDIVSRVHCQESGEESSETESIYALKCHISH-EVNHLHEGLKHGLK-----SELEKASPALGRSAVYLKESCINGL 300 (486)
Q Consensus 227 ~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~-~~~~l~~~l~~~~~-----~~~~~~c~~c~~~~~~~k~~~i~~l 300 (486)
.+|.|++..+.+|..|+..+...+.|.+++++++. ...++..+|..+.. ++..+.|+.|...+.+.++..+..+
T Consensus 383 ~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~l 462 (587)
T KOG1864|consen 383 KLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKL 462 (587)
T ss_pred HhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCC
Confidence 99999999999999999999999999999999874 33578888887754 5566899999999999999999999
Q ss_pred CCceEEEEEEEEEeccccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCcccc
Q 011408 301 PRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKM 380 (486)
Q Consensus 301 P~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (486)
|.+|+|||+||.|........|+...|.+|.++.+.....++
T Consensus 463 p~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~-------------------------------------- 504 (587)
T KOG1864|consen 463 PYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD-------------------------------------- 504 (587)
T ss_pred cceeeeehhccccccccccccccccccccccceeeccccccc--------------------------------------
Confidence 999999999999998666779999999999999887644331
Q ss_pred ccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChh
Q 011408 381 TEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREE 460 (486)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~ 460 (486)
......|.|+|||||.|.+++.|||+||+|...-.|+.|||+.|+.++.+
T Consensus 505 ------------------------------~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~ 554 (587)
T KOG1864|consen 505 ------------------------------NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEE 554 (587)
T ss_pred ------------------------------cCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcc
Confidence 12246899999999999999999999999954444999999999999999
Q ss_pred hhhhccCCCCCceEEEEEE
Q 011408 461 DITKLSGGGDWHMAYICMY 479 (486)
Q Consensus 461 ~v~~~~~g~~~~~aYlLfY 479 (486)
+|....|.+.....|.++|
T Consensus 555 ~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 555 PVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred hhhhccCCCccceeeeEEe
Confidence 9998776544444444444
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.9e-32 Score=248.85 Aligned_cols=310 Identities=24% Similarity=0.343 Sum_probs=232.5
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCC---------------
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKS--------------- 165 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------- 165 (486)
-.|+|+.|-||-|||||+||+|..|++|.+.+........... ....+++.++..++....+-
T Consensus 26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~--~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~ 103 (420)
T KOG1871|consen 26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK--EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPE 103 (420)
T ss_pred cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee--cccchhHHHHHHHHhhccccchhhhhhhccCCccc
Confidence 3699999999999999999999999999998877663322221 34567777777766654411
Q ss_pred --------------CCCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccC---------------
Q 011408 166 --------------VKPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSV--------------- 216 (486)
Q Consensus 166 --------------~~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~--------------- 216 (486)
..++-|..+.-.+... +.|.. ...+.|.||.||+..++|.|++++-..
T Consensus 104 ~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~e~--~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 104 HVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRFES--LQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccchhhhhhhcccCccccCCchhhhcccC-Cchhh--ccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 1233333333333322 44442 235799999999999999999997411
Q ss_pred --C-----------------------------------CCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 217 --N-----------------------------------ASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 217 --~-----------------------------------~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
+ .+...+.+.++|+|++++.+.-.. .+++.+.+||..|+++|
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~-nkeS~tlqPF~tlqldi 259 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPS-NKESATLQPFFTLQLDI 259 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccc-cccccccCccceeeeee
Confidence 0 000134599999999999987655 45569999999999999
Q ss_pred c-CCcchHHHHHHhhhhhh-hhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceecccc
Q 011408 260 S-HEVNHLHEGLKHGLKSE-LEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYD 337 (486)
Q Consensus 260 ~-~~~~~l~~~l~~~~~~~-~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 337 (486)
. ....+..+++..+...+ +..+..+-+..+.+.++..+.+||++|++|++||.|... +...|+.+.+++|-.+.+..
T Consensus 260 q~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~t-gg~~k~~K~i~~~~~l~i~~ 338 (420)
T KOG1871|consen 260 QSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKT-GGARKLGKKIEYPWTLKISK 338 (420)
T ss_pred eccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhc-cchhhhchhhhccceeeech
Confidence 4 34568888888887644 334555567778889999999999999999999999874 45689999999999998875
Q ss_pred ccCh-hhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCee
Q 011408 338 FCSD-DLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGI 416 (486)
Q Consensus 338 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (486)
-|.. .++ . ........
T Consensus 339 ~~~s~gvk-----~----------------------------------------------------------~~~~~~~~ 355 (420)
T KOG1871|consen 339 NCFSQGLK-----I----------------------------------------------------------RILIATRP 355 (420)
T ss_pred hhhccccc-----h----------------------------------------------------------hhhccccc
Confidence 4421 100 0 00133467
Q ss_pred EEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEeecc
Q 011408 417 YDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARS 483 (486)
Q Consensus 417 Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~~ 483 (486)
|+|.|||.|.|.++..|||.+-+.+ ..+.|+++||..|..+..++|++-.+ ..+||+|.|++.+
T Consensus 356 yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~---~r~~yllyY~~~d 420 (420)
T KOG1871|consen 356 YKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTG---SRTPYLLYYIEAD 420 (420)
T ss_pred cceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccC---ccchheeEeeecC
Confidence 9999999999999999999999998 77889999999999999999998443 5799999999864
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.92 E-value=1.8e-24 Score=199.55 Aligned_cols=287 Identities=21% Similarity=0.220 Sum_probs=214.4
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC---CCcchHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV---KPVAPMQFWML 177 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~i~p~~~~~~ 177 (486)
++.+||.|+.++=|+|+++|+|.+.+++|++++.... .-+....+...|..+.+.+|+.. ..++|.+++++
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n------~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqa 205 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN------YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQA 205 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhccccc------ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 4679999999999999999999999999999987532 12456789999999999999987 78999999998
Q ss_pred HHhhC-CcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCC----CCCeeeecCce
Q 011408 178 LRKKY-PQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQE----SGEESSETESI 252 (486)
Q Consensus 178 l~~~~-~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~----c~~~s~~~e~~ 252 (486)
.-... ..|. .++|.|+.||+.|||+.||..+.+.. ...++|+..|.|.++....-.. -.......-+|
T Consensus 206 V~~~s~k~f~-----i~~q~DpveFlswllntlhs~l~~~k--~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~F 278 (442)
T KOG2026|consen 206 VMKLSKKRFR-----IGQQSDPVEFLSWLLNTLHSDLRGSK--KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPF 278 (442)
T ss_pred HHHHhhhhee-----cCCCCCHHHHHHHHHHHHHHHhCCCC--CchhHhhHhhcceEEeeeeccccccccccceEEEEee
Confidence 76542 2344 77999999999999999999998874 4568899999999887654333 11225677789
Q ss_pred EEEEEeccCCcc-------------hHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccc
Q 011408 253 YALKCHISHEVN-------------HLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQ 319 (486)
Q Consensus 253 ~~l~l~i~~~~~-------------~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~ 319 (486)
+.|.|++|...- .|.+.|..|-.+.. ........+ ++.++.++|+||++|++||.-+. .-
T Consensus 279 l~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~----~e~~~~~~~-~rf~l~k~P~ylifh~~rF~kNn--~f 351 (442)
T KOG2026|consen 279 LYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETV----TEVVTPKLA-MRFRLTKLPRYLIFHMKRFKKNN--FF 351 (442)
T ss_pred EEEEecCCCCCcccchhhhcccccchHHHHHHHhcCcee----eeecchhhh-hheeeecCCceEEEEeeeccccC--cc
Confidence 999999976531 22233332221111 001111122 78899999999999999997544 55
Q ss_pred ccccccccccc-ceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCccccc
Q 011408 320 KAKILRKVDYP-LELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVAS 398 (486)
Q Consensus 320 ~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (486)
..|+.+-++|| ..+|+.++.....
T Consensus 352 ~ekNpTl~~f~~~~~~~~~~~~~~~------------------------------------------------------- 376 (442)
T KOG2026|consen 352 KEKNPTLVEFPYSEVDILHVLDRLK------------------------------------------------------- 376 (442)
T ss_pred cccCCceeeccCCccchhhhhhhcc-------------------------------------------------------
Confidence 78999999999 5777776554310
Q ss_pred CCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCCCceEEEE
Q 011408 399 SQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYIC 477 (486)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlL 477 (486)
. ....-..|.|.|-++|. ..-|||...+++ .++.||..+|-+|++...+=|.- ..+||-
T Consensus 377 ---------~-~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L-------~Es~iQ 436 (442)
T KOG2026|consen 377 ---------A-VNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFL-------KESFIQ 436 (442)
T ss_pred ---------c-ccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHHHH-------HHHHHH
Confidence 0 01222579999999996 678999999998 78999999999999988766543 357777
Q ss_pred EEeec
Q 011408 478 MYKAR 482 (486)
Q Consensus 478 fY~r~ 482 (486)
+|++.
T Consensus 437 iwe~~ 441 (442)
T KOG2026|consen 437 IWEKQ 441 (442)
T ss_pred HHhcc
Confidence 77664
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.87 E-value=1.2e-21 Score=198.02 Aligned_cols=318 Identities=19% Similarity=0.194 Sum_probs=214.9
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHh
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWMLLRK 180 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~ 180 (486)
.+.||.-.+-.-|.||+||+|+.+|++|..++.+. +....|++|+|.-||.+|..+. ..+....|+.+++.
T Consensus 498 ~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~--------C~~e~CL~CELGFLF~Ml~~S~G~~Cqa~NFlraf~t 569 (1118)
T KOG1275|consen 498 TYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHI--------CTKEFCLLCELGFLFTMLDSSTGDPCQANNFLRAFRT 569 (1118)
T ss_pred eeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCc--------cchhHHHHHHHHHHHHHHhhhcCCccchhHHHHHHhh
Confidence 46788888888899999999999999999999874 5678999999999999998776 78899999988876
Q ss_pred hCCcccccCC-----------CCCCCchHHHHHHHHHHHHHHhhc-----c--CC-----CCCCCccccccceEEEEEEE
Q 011408 181 KYPQFGQLHN-----------GTFMQQDAEECWTQLLYTLSQSLR-----S--VN-----ASEIPDTVKALFGIDIVSRV 237 (486)
Q Consensus 181 ~~~~f~~~~~-----------~~~~QqDa~Efl~~ll~~l~~~~~-----~--~~-----~~~~~~~i~~~F~~~~~~~~ 237 (486)
.-..-+-.-. ....-|||.-|.....+....-.. . .. .-.....+.+.|+.+.+...
T Consensus 570 ~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~~~~~~~~vn~~~~l~q~F~~~~e~~~ 649 (1118)
T KOG1275|consen 570 NPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSESVDGESFKVNYAPVLQQSFCQEIEKSL 649 (1118)
T ss_pred ChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhcccCceeeecchhHHHHHhhhHHHHhh
Confidence 5211110000 011123343332222211111000 0 00 00123469999999999999
Q ss_pred EeCCCCCeeeecCceEEEEEeccCCc--------chHHHHHHhhh--hhhhhhcCcccCCcceEeeeeEecccCCceEEE
Q 011408 238 HCQESGEESSETESIYALKCHISHEV--------NHLHEGLKHGL--KSELEKASPALGRSAVYLKESCINGLPRYLTIQ 307 (486)
Q Consensus 238 ~C~~c~~~s~~~e~~~~l~l~i~~~~--------~~l~~~l~~~~--~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~ 307 (486)
.|..|++++.+......+.+..+... ......|+..+ .+.....|+.|++......+..+..||.+|.|.
T Consensus 650 ~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~in 729 (1118)
T KOG1275|consen 650 RCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTSQKKNVRSLPDCLSIN 729 (1118)
T ss_pred hcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCCCcccccccccCcceeeee
Confidence 99999999666555555555544321 12222333222 233346899999999999999999999999999
Q ss_pred EEEEEEecc--ccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccC
Q 011408 308 FVRFFWKRE--SNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEG 385 (486)
Q Consensus 308 l~Rf~~~~~--~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (486)
..-+.-... +.+..|....|.+|+.+.|..--.... ..+.
T Consensus 730 ~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~---------------------~v~~----------------- 771 (1118)
T KOG1275|consen 730 TCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQ---------------------LVST----------------- 771 (1118)
T ss_pred eeccchhhhhhHHHhhccccccccchheeEEEecccce---------------------eeee-----------------
Confidence 987753321 122446788899999887764221110 0000
Q ss_pred CCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc---------cCCeEEEeeCCCcee
Q 011408 386 SASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ---------ESGKWIEYDDDNPLP 456 (486)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~---------~~~~W~~~nD~~V~~ 456 (486)
..+. ...+..+.......+|+|.|+|+|.|++-+.+|.|++||. .+.+||.|||.-|.+
T Consensus 772 ----------~s~~--~~~~~~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ 839 (1118)
T KOG1275|consen 772 ----------ISDL--DVSPLPDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSE 839 (1118)
T ss_pred ----------eccc--cCCCCccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeee
Confidence 0000 0011112224455799999999999998899999999996 346999999999999
Q ss_pred cChhhhhhccCCCCCceEEEEEE
Q 011408 457 QREEDITKLSGGGDWHMAYICMY 479 (486)
Q Consensus 457 ~~~~~v~~~~~g~~~~~aYlLfY 479 (486)
++++|.+. ..++|..+-||+|
T Consensus 840 ite~EAl~--~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 840 ITEEEALH--FDGPWKVPAILYY 860 (1118)
T ss_pred CChHHheE--eccCccCcEEEEE
Confidence 99999886 4568999999999
No 40
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.75 E-value=3.4e-18 Score=126.86 Aligned_cols=71 Identities=41% Similarity=0.556 Sum_probs=68.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe---cCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV---KGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~---~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|||+|++|+ |+|++++||.+||++|++++|||+++||||+ +|++++|+.+|.++++++|.+++|||+
T Consensus 1 ~~i~vk~~g~~~~-v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYS-VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEE-EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 5899999999999 9999999999999999999999999999995 899999999999999999999999985
No 41
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.54 E-value=2.6e-14 Score=106.39 Aligned_cols=70 Identities=33% Similarity=0.443 Sum_probs=68.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+|+|+.++ +++++++||.+||++|++.+|+|+++|+|+++|+.+.|+.++.++++++|..++++|
T Consensus 1 i~i~vk~~g~~~~-i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHD-LSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEE-EEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 6899999999999 999999999999999999999999999999999999999999999999999999987
No 42
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.48 E-value=1.5e-13 Score=101.34 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=66.4
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|+.|+|+- .|+++. +++++++||.+||++|++.+|+|+++|||++.|++|+|+.+|.+++|++|.+++|
T Consensus 1 ~~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEE
Confidence 78999998 589999 9999999999999999999999999999999999999999999999999999987
No 43
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.36 E-value=2.1e-12 Score=96.54 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=66.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+. +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|+++.+++++..
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEc
Confidence 3677775 789999 9999999999999999999999999999999999999999999999999999988643
No 44
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.33 E-value=2.8e-12 Score=94.02 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=62.1
Q ss_pred EEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|+. +|+++. ++|++++||.++|++|++..|+|+++|+|+|.|+.|+|+.++.+++|+++..++++
T Consensus 2 ~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVK-LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4555 689999 99999999999999999999999999999999999999999999999999999875
No 45
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.32 E-value=5e-12 Score=94.29 Aligned_cols=69 Identities=23% Similarity=0.441 Sum_probs=65.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+|.||+ .|++++ +.+++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|++++|..++++
T Consensus 1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 5788998 578999 99999999999999999999999999999999999999999999999999998875
No 46
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.32 E-value=6.9e-12 Score=94.45 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=66.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|+|+- +|++++ |+|++++||.+||++|++.+++|+++|||+++|++|+|+ +|.+|++++|.+++|+-+.
T Consensus 2 m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 5788887 589999 999999999999999999999999999999999999999 9999999999999997654
No 47
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.31 E-value=5.6e-12 Score=94.19 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=64.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.||- +++++ ++|++++||+++|++|++.+|+|+++|+|+|.|+.|+|+.++.+|+|+++.+++++-
T Consensus 1 mqi~vk~-~~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRA-QNTHT-LEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEEC-CCEEE-EEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 4678886 47899 999999999999999999999999999999999999999999999999999998853
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.31 E-value=5.8e-12 Score=93.17 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=61.7
Q ss_pred CeEEEEEe-CCeE--EEEEEeCCCCCHHHHHHHHHHhhC--CCCCceEEEecCCcCCCCccccccC--cCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEV--FSNVEIDTSQTPYVFKCQLYDLTG--VPPERQKIMVKGGLLKDDSDWSMLG--VKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~--~~~~~~~~~~tv~~lk~~l~~~~~--vp~~~qkl~~~~~~l~d~~~l~~~~--i~~~~~i~l~g 72 (486)
.|+|.||. ++++ |+ |++++++||++||++|++..+ .|+++|||||+|++|+|+.+|.++. +.++.+++|+.
T Consensus 1 ~i~l~IK~~~~~~~~~~-ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQT-VSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEE-EecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 37899998 6777 45 555899999999999999885 4579999999999999999999995 99999999874
No 49
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.31 E-value=8.6e-12 Score=94.27 Aligned_cols=72 Identities=25% Similarity=0.486 Sum_probs=66.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCC--CCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGV--PPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~v--p~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|+. +|+++. +++++++||.+||++|++.+|+ |+++|+|+++|+.|+|+.+|.++++++|..++++.+.
T Consensus 1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 3577775 789999 9999999999999999999999 9999999999999999999999999999999887653
No 50
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.29 E-value=7.2e-12 Score=94.00 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=61.8
Q ss_pred eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 8 WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 8 ~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
-+|++++ ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|++.+|..++|+..
T Consensus 5 l~g~~~~-l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 5 LNGQMLN-FTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred cCCeEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEe
Confidence 3899999 9999999999999999999999999999999999999999999999999999988654
No 51
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.28 E-value=9.1e-12 Score=93.46 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=64.1
Q ss_pred eEEEEEe-CCeE-EEEEE-eCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEV-FSNVE-IDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~-~~~~~-~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|+. +|++ +. ++ +++++||.+||++|++.+|+|++.|||+|+|+.|+|+.+|.+|+|++|.++.|+-..
T Consensus 1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 3567776 5665 78 95 899999999999999999999999999999999999999999999999999986543
No 52
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.27 E-value=1.7e-11 Score=93.02 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=66.7
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEE--EecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKI--MVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl--~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|+|+- +|+++. ++|++++||.+||++|++.+|+|+++||| +++|++|+|+.+|.+|++++|.+++++-.+
T Consensus 3 ~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 5788887 689999 99999999999999999999999999999 899999999999999999999999886543
No 53
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.25 E-value=1.5e-11 Score=91.81 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=62.9
Q ss_pred EEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 4 VSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 4 ~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|.|+. .|+++. ++|++++||+++|++|++..|+|+++|+|+++|+.|+|+.++.+|+|+++.++.|+-
T Consensus 1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 35665 789999 999999999999999999999999999999999999999999999999999988753
No 54
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.23 E-value=2.7e-11 Score=89.45 Aligned_cols=64 Identities=30% Similarity=0.542 Sum_probs=61.2
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+|++|. ++|++++||.+||++|++.+|+|++.|+|+++|..|+|+.+|.+|+|++|..++|+..
T Consensus 4 ~g~~~~-~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFT-LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEE-EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEE-EEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEe
Confidence 688999 9999999999999999999999999999999999999999999999999999988654
No 55
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.23 E-value=2.6e-11 Score=89.53 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.4
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC-ccccccCcCCCCeEEE
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD-SDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~-~~l~~~~i~~~~~i~l 70 (486)
+|+..-+|+++. ++|++.+||.+||++|++.+|+|++.|+|++.|+.|+|+ .++.++++++|..+++
T Consensus 2 ~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFS-LDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEE-EEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 344444688999 999999999999999999999999999999999999998 6899999999998876
No 56
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.22 E-value=2.7e-11 Score=89.48 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=62.6
Q ss_pred EEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 5 SVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 5 ~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
.|+. .|+++. +++++++||.++|++|++.+|+|+++|+|+++|+.|+|+.++.+++|++|.+++++.
T Consensus 2 ~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 2 YVRTNTGHTFP-VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred EEEcCCCCEEE-EEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4554 789999 999999999999999999999999999999999999999999999999999998864
No 57
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.21 E-value=4.6e-11 Score=94.55 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=65.9
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+- +|+++. ++|++.+||.+||++|++..|+|+++|+|++.|+.|+|+.+|.+|+|+++.+++++-
T Consensus 28 M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 28 MELFIETLTGTCFE-LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred EEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 5788887 789999 999999999999999999999999999999999999999999999999999998853
No 58
>PTZ00044 ubiquitin; Provisional
Probab=99.21 E-value=4.5e-11 Score=90.04 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=65.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+- +|+++. +.+++++||.+||++|++.+|+|++.|+|++.|+.|+|+.++.+|++.++..++++-
T Consensus 1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 3677887 789999 999999999999999999999999999999999999999999999999999988853
No 59
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.21 E-value=3.9e-11 Score=88.88 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=62.3
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
++|.|+.....+. |++++++||.+||++|++.+|+|+++|+|++.|+.|+|+.+|.+|++++|.+++|+
T Consensus 1 ~~i~vk~~~g~~~-l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKEE-IEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCEE-EEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 4677887433468 99999999999999999999999999999999999999999999999999998875
No 60
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.17 E-value=8.8e-11 Score=88.54 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=65.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+. +|+++. +++++++||++||++|++.+|+|+++|+|++.|+.|+|+.++.++++.+|..++++-
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 4688887 589999 999999999999999999999999999999999999999999999999999988854
No 61
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.15 E-value=1.6e-10 Score=87.15 Aligned_cols=70 Identities=19% Similarity=0.362 Sum_probs=65.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+- +|+++. ++|+++.||.+||++|++.+|+|+++|+|++.|..|.|+.++.+|++.+|..++++-
T Consensus 1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 3677776 689999 999999999999999999999999999999999999999999999999999998854
No 62
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.13 E-value=1.3e-10 Score=84.35 Aligned_cols=64 Identities=28% Similarity=0.509 Sum_probs=60.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQ 66 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~ 66 (486)
++|.|++.++++. ++|++++||.+||++|+..+|+|+++|+|++.|+.|+|+.+|.++++++|.
T Consensus 1 ~~i~vk~~~~~~~-~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTIT-LEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 5789999878889 999999999999999999999999999999999999999999999998863
No 63
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.6e-10 Score=77.07 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=63.1
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.|+|+. .|+.++ |++++.++|..+|..+.+..||||.+|||+|.|+.+.||.+-..|++..|..++++
T Consensus 2 ~iKvktLt~KeIe-idIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 2 LIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred eeeEeeeccceEE-EeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 577887 689999 99999999999999999999999999999999999999999999999998887763
No 64
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.05 E-value=1e-09 Score=106.68 Aligned_cols=72 Identities=22% Similarity=0.450 Sum_probs=69.2
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|.|+||..+.+++ |.|..+.||.+||+.|...|++|+++++|||.|++|||+.+|..++|++|.+++||-..
T Consensus 16 irV~Vkt~~dk~~-~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 16 IRVTVKTPKDKYE-VNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred eEEEEecCCccee-EecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 6799999999999 99999999999999999999999999999999999999999999999999999997765
No 65
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=8.6e-10 Score=107.48 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=67.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhC---CCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTG---VPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTAD 75 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~---vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~ 75 (486)
++|+||. .|++|. |+|++++||.+||++|++.+| +|+++|||||+|++|+|+.+|.+|+|+++.++++|.++.
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 4678885 789999 999999999999999999998 999999999999999999999999999999988877653
No 66
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.95 E-value=1.2e-09 Score=79.68 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHhh--CCC-CCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 19 DTSQTPYVFKCQLYDLT--GVP-PERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 19 ~~~~tv~~lk~~l~~~~--~vp-~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
..++||.+||++|++.+ |++ +++|||+|.|++|+|+.+|.+|+|++|.+++|+.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 46899999999999997 475 9999999999999999999999999999999864
No 67
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.93 E-value=2.7e-09 Score=95.01 Aligned_cols=221 Identities=14% Similarity=0.279 Sum_probs=128.0
Q ss_pred CccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhc----CCC-CCcchHHHHHHHHhh
Q 011408 107 FNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLD----KSV-KPVAPMQFWMLLRKK 181 (486)
Q Consensus 107 ~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~----~~~-~~i~p~~~~~~l~~~ 181 (486)
.|.-|.||+.++|=+|.|+..+++.+-... ....+++..|..-|.+.. ... ..+........
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~~---------~~e~s~~~~L~~~Y~qa~~ll~~~q~~~~~~~~~~~~---- 72 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTELC---------SKEESVFWRLFTKYNQANKLLHTCQLDGVKDDDCKKV---- 72 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhhc---------cccccHHHHHHHHHHHHHHHHHhhhhcCCCCcccccC----
Confidence 688899999999999999999999887632 122344444433333211 000 11111110000
Q ss_pred CCcccccCCCCCCCchHHHHHHHHHHHHHHhhccC-----CCC-----------CCCccccccceEEEEEEEEeCCCCCe
Q 011408 182 YPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSV-----NAS-----------EIPDTVKALFGIDIVSRVHCQESGEE 245 (486)
Q Consensus 182 ~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----~~~-----------~~~~~i~~~F~~~~~~~~~C~~c~~~ 245 (486)
. ...=.+|...|..+-+.|-..+... +.. ..+..+.++|...+.=...|..||+.
T Consensus 73 ----~-----~~~l~~ae~~Ln~vR~~iF~~LqPkL~C~LG~~ESPVFAlPLLLk~d~~~E~lF~~sf~WeFeC~~Cg~~ 143 (275)
T PF15499_consen 73 ----P-----SEILAKAETCLNEVRMEIFIQLQPKLRCKLGDMESPVFALPLLLKLDPWIEKLFLYSFSWEFECSQCGHK 143 (275)
T ss_pred ----c-----hHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCccCcHHHhHHHHhcchHHHhHhheeeEEEEEccccCCh
Confidence 0 0001234444444444444333321 000 11444899999999999999999997
Q ss_pred ee-----ecCceEEEEEeccCCcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEecccccc
Q 011408 246 SS-----ETESIYALKCHISHEVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQK 320 (486)
Q Consensus 246 s~-----~~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~ 320 (486)
.. +.-+|..+ ++.-. . ++-.-..-|..|+.+.. .++..+.++|+++++|+.- |-+
T Consensus 144 ~~~R~~K~L~TFtnv---~pdwh-P--------LnA~h~~pCn~C~~ksQ-~rkMvlekv~~vfmLHFVe-------GLP 203 (275)
T PF15499_consen 144 YQNRCTKTLVTFTNV---IPDWH-P--------LNAVHFGPCNSCNSKSQ-RRKMVLEKVPPVFMLHFVE-------GLP 203 (275)
T ss_pred hhhhheeeecccCCC---CCCCC-c--------ccccccCCCcccCChHH-hHhhhhhcCchhhhhhhhc-------cCC
Confidence 21 11111111 11100 0 11111246999988764 7788899999999999852 332
Q ss_pred ccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCC
Q 011408 321 AKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQ 400 (486)
Q Consensus 321 ~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (486)
.+ |+..|.-
T Consensus 204 ~n-----------dl~~ysF------------------------------------------------------------ 212 (275)
T PF15499_consen 204 HN-----------DLQHYSF------------------------------------------------------------ 212 (275)
T ss_pred cc-----------CCCccce------------------------------------------------------------
Confidence 22 2222211
Q ss_pred CCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCC
Q 011408 401 DGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDN 453 (486)
Q Consensus 401 ~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~ 453 (486)
.-....|++.+||-+.- +--|+++|+++.+|.|..|||-+
T Consensus 213 ----------~feg~~Y~Vt~VIQY~~---~~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 213 ----------HFEGCLYQVTSVIQYQA---NLNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred ----------eecCeeEEEEEEEEEec---cCceeEEEEEcCCCCeEeeccCC
Confidence 12336799999999864 35699999999999999999965
No 68
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.89 E-value=3.7e-09 Score=78.51 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=54.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCC-CCccccccCcC-CCCeEEE
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLK-DDSDWSMLGVK-QGQRLMM 70 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~-d~~~l~~~~i~-~~~~i~l 70 (486)
+|.++. |+|++++||.++|++|++.+|+||++|+| +.|+.+. |+.+|.+|+++ +|..+++
T Consensus 11 ~~~t~~-l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 11 HTVTIW-LTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCCeEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 578899 99999999999999999999999999999 9888775 66899999999 6787766
No 69
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.89 E-value=7e-09 Score=76.43 Aligned_cols=66 Identities=32% Similarity=0.542 Sum_probs=61.5
Q ss_pred EEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 6 VKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 6 v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|++ .|..+. +.+++++|+.+||++|++.+|+|+++|+|+++|+.++|+.++.++++.++..++++.
T Consensus 2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 555 489999 999999999999999999999999999999999999999999999999999998864
No 70
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.87 E-value=4.5e-09 Score=79.08 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=55.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC-ccccccCcCCCCeEEEee
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD-SDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~-~~l~~~~i~~~~~i~l~g 72 (486)
.... +.|++.+||.+||.+|...|+|||.+|+|++.|..|.|| .+|++|||.++..++|+-
T Consensus 15 ~~~~-L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 15 GEKA-LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CCce-EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 3567 889999999999999999999999999999989877766 899999999999999964
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.78 E-value=1.1e-08 Score=94.45 Aligned_cols=74 Identities=26% Similarity=0.439 Sum_probs=69.7
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhC--CCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecccc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTG--VPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~--vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
++|+||. .|++|+ |+|.++.||.++|+.|..+.| .|.+.||||+.|++|+|+.++.+|+++++..|.+|.++.+
T Consensus 1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeE-eecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 3688887 789999 999999999999999999999 8999999999999999999999999999999999998874
No 72
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=6.2e-09 Score=78.66 Aligned_cols=69 Identities=20% Similarity=0.395 Sum_probs=64.7
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|..|.+.+-|++.. +++++++||..+|+.+....|+||+.|+|++.|++|+|..|+.+|+|..-.++++
T Consensus 1 ~~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~ 69 (128)
T KOG0003|consen 1 MQIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (128)
T ss_pred CcEEEEEeeCceEE-EEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhh
Confidence 45678888999999 9999999999999999999999999999999999999999999999988877765
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.67 E-value=2e-07 Score=71.13 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=59.2
Q ss_pred eEEEEEeC--CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCC------cCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQ--KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGG------LLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~--~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~------~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+.. ....+ ..+++..||.+||.+|+..||+||..|+|. +.+. +.+|+.+|..|++.+|..|+++.
T Consensus 2 v~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFE-KKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeee-EecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 57778876 34445 669999999999999999999999999996 5554 34677899999999999999965
Q ss_pred c
Q 011408 73 T 73 (486)
Q Consensus 73 ~ 73 (486)
.
T Consensus 81 ~ 81 (84)
T cd01789 81 V 81 (84)
T ss_pred C
Confidence 4
No 74
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.67 E-value=1.2e-07 Score=73.06 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=64.9
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+|.|+.. |++.. +.|.+++|+..||+++++..|+|+++|+++|.|..|+++.|+.++++.+|..|.++
T Consensus 12 i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 12 INLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred EEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 67888874 88999 99999999999999999999999999999999999999999999999999998875
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.62 E-value=1e-07 Score=73.54 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=60.5
Q ss_pred CeEEEEEeCCe---EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec-C-------CcCCCCccccccCcCCCCeEE
Q 011408 1 MLTVSVKWQKE---VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK-G-------GLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 1 ~~~~~v~~~~~---~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~-~-------~~l~d~~~l~~~~i~~~~~i~ 69 (486)
|++|.|.++.. ..+ +.++...||.+||.+|+.+||+|++.|+|.+. . ...+|+.+|..|++++|..|+
T Consensus 1 ~v~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp EEEEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred CEEEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 58899999765 788 99999999999999999999999999999854 1 244566899999999999999
Q ss_pred Eeecc
Q 011408 70 MMGTA 74 (486)
Q Consensus 70 l~g~~ 74 (486)
+..+.
T Consensus 80 V~D~~ 84 (87)
T PF14560_consen 80 VVDTN 84 (87)
T ss_dssp EEE-T
T ss_pred EEeCC
Confidence 86654
No 76
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.1e-07 Score=75.53 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=80.4
Q ss_pred EEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccccccCCC
Q 011408 3 TVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADEIVKAP 81 (486)
Q Consensus 3 ~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~~~~~p 81 (486)
.|.|+.- +++.. .++.+++||..+|++|++..|||+++||+++.|..|.|+.++++|+|+.-.++.++-.---....+
T Consensus 2 ~ifVk~l~~kti~-~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kkr 80 (156)
T KOG0004|consen 2 QIFVKTLTGKTIT-LEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR 80 (156)
T ss_pred ccchhhcccccee-eeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcccc
Confidence 5778874 57888 999999999999999999999999999999999999999999999999999888743311111111
Q ss_pred CCCCccccCCchhhhhhccCCCcccCccc-cchhhhhHHHHHh
Q 011408 82 EKGPVFVEDLPEEEQVLSLGHSAGLFNLG-NTCYMNSTIQCLH 123 (486)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~GL~N~G-NtCY~NSvLQ~L~ 123 (486)
.+.. + .++.. .......+||.-++ ++=..|.-+|.|.
T Consensus 81 kkk~-~--~~pk~--~~~~~kk~~l~~~~y~kvd~ngkiq~l~ 118 (156)
T KOG0004|consen 81 KKKS-Y--TTPKK--IKSKHKKVSLAVLKYYKVDENGKVQRLR 118 (156)
T ss_pred cccc-c--ccccc--cCCCccccccCCccceeeccCcchhhhh
Confidence 1111 1 01100 11223455666665 3466777777765
No 77
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.35 E-value=8.7e-07 Score=69.30 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=49.3
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHh-----hCCC--CCceEEEecCCcCCCCccccccC------cCCCCeEEEee
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDL-----TGVP--PERQKIMVKGGLLKDDSDWSMLG------VKQGQRLMMMG 72 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~-----~~vp--~~~qkl~~~~~~l~d~~~l~~~~------i~~~~~i~l~g 72 (486)
..-. ..+++++||.++|++|.+. .++| +++|||||.|++|+|+.+|.+++ +....+++++-
T Consensus 16 digp-~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvl 89 (113)
T cd01814 16 DIGP-KRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVV 89 (113)
T ss_pred ccCc-cccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEe
Confidence 4446 7788999999999999944 4566 99999999999999999999998 44445555543
No 78
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.32 E-value=2.5e-06 Score=63.31 Aligned_cols=68 Identities=19% Similarity=0.379 Sum_probs=61.7
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCC-CceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPP-ERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~-~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|+|+|+.. |+.+. +.|.+..++..|++..++..|+|+ +..+++|.|..|.++.|+.++++.+|..+-+
T Consensus 1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEE
Confidence 68888884 78999 999999999999999999999999 9999999999999999999999999988765
No 79
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.14 E-value=7.1e-06 Score=61.58 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=54.4
Q ss_pred EEEEEeCC-eEEEEEEe-CCCCCHHHHHHHHHHhhC-CCCCceEEE--ecCCcCCCCccccccCcCCCCeEEE
Q 011408 3 TVSVKWQK-EVFSNVEI-DTSQTPYVFKCQLYDLTG-VPPERQKIM--VKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~-~~~~~~~~-~~~~tv~~lk~~l~~~~~-vp~~~qkl~--~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.|.++-.+ +.+..+++ ++++||.+||+++++..+ ++++||++. ++|++|+|+.++.++++++|..+++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45556555 44322344 588999999999999986 489999997 7899999999999999999988765
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.11 E-value=9.2e-06 Score=63.15 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=54.3
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCC
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQ 64 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~ 64 (486)
+-|+..+.++- ++..++.||.+||+.|..++.+||+.|+|+..+.+|+|+++|.++|+..
T Consensus 5 lmIrR~KTTiF-~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 5 LMIRRHKTTIF-TDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTS 64 (119)
T ss_pred EEEEecceEEE-eecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccc
Confidence 56778888888 9999999999999999999999999999995557899999999999943
No 81
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.2e-05 Score=84.96 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=65.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+.|+||. ...+.+ +.|+..+||..||.++...++|+.+.||+||.|.+|.||+++.+|+| +|+.++|++.
T Consensus 3 ~~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 3 PNVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVER 73 (1143)
T ss_pred cceeeeecccceeE-EEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeecc
Confidence 4578887 568889 99999999999999999999999999999999999999999999999 9999999876
No 82
>PLN02560 enoyl-CoA reductase
Probab=97.95 E-value=2.5e-05 Score=74.58 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=56.9
Q ss_pred EEEEEe-CCeEE---EEEEeCCCCCHHHHHHHHHHhhCC-CCCceEEEec-------CCcCCCCccccccCcCCCCeEEE
Q 011408 3 TVSVKW-QKEVF---SNVEIDTSQTPYVFKCQLYDLTGV-PPERQKIMVK-------GGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~-~~~~~---~~~~~~~~~tv~~lk~~l~~~~~v-p~~~qkl~~~-------~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|+|+- +|+.+ + |++++++||.|||+++++..++ +++||||++. |..++|+.++.++++++|.++++
T Consensus 2 ~I~Vk~~~Gk~i~~~~-lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 2 KVTVVSRSGREIIKGG-LEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred EEEEEcCCCCeeccee-EEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 566665 36665 7 9999999999999999999987 8999999952 23788999999999999998877
No 83
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=97.77 E-value=0.00019 Score=54.05 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=48.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC-----CcC-CCCccccccCcCCCCeEEEeeccccccCCCC
Q 011408 12 VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG-----GLL-KDDSDWSMLGVKQGQRLMMMGTADEIVKAPE 82 (486)
Q Consensus 12 ~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~-----~~l-~d~~~l~~~~i~~~~~i~l~g~~~~~~~~p~ 82 (486)
.++ ..++..+||..+++.++++|.| ++.-|||.++ ..| +.+.|+.+.+|.+||.+++ +.+++.++||+
T Consensus 15 ~~t-~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli-E~rn~DGtWPr 88 (88)
T PF14836_consen 15 VLT-KQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI-EERNEDGTWPR 88 (88)
T ss_dssp EEE-EEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE-EE--TTS--TT
T ss_pred HhH-hhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE-EeeccCCCCCC
Confidence 677 8899999999999999999999 7779999543 244 4457999999999997776 88999999985
No 84
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.59 E-value=0.00029 Score=50.08 Aligned_cols=62 Identities=24% Similarity=0.467 Sum_probs=56.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|.... +.+.+..|+.+|++++++.+|+++++++|++.++.+++...+..+.+.++..+.+.
T Consensus 6 ~~~~~~-~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 6 DGKTVE-LLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred CCCEEE-EEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 478888 99999999999999999999999999999999999998877778889999888774
No 85
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=1.3e-05 Score=83.08 Aligned_cols=207 Identities=17% Similarity=0.295 Sum_probs=124.6
Q ss_pred CCchHHHHHHHHHHHHHHhhccCC-----------------CCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEE
Q 011408 194 MQQDAEECWTQLLYTLSQSLRSVN-----------------ASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALK 256 (486)
Q Consensus 194 ~QqDa~Efl~~ll~~l~~~~~~~~-----------------~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~ 256 (486)
...++.++|..++..+++...... ..+..+.++++|+.....++.|..|...+..-+. ..+-
T Consensus 548 ~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile~~~~Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peq-sS~~ 626 (806)
T KOG1887|consen 548 HEGVYSELLSDLLLSLEEVHNASSSAADVVVAILEFWQCWKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQ-SSYG 626 (806)
T ss_pred hhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHhcccccccHHHHHHHHhhhhhhhhhhccccccccCCCCcch-hhhh
Confidence 446778888888888887765331 1122345889999999999999999887433321 1111
Q ss_pred EeccCC----------cchHHHHHHhhhhhhhhhcCcc----cCCcceEeeeeEecccCCceEEEEEEEEEecccccccc
Q 011408 257 CHISHE----------VNHLHEGLKHGLKSELEKASPA----LGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAK 322 (486)
Q Consensus 257 l~i~~~----------~~~l~~~l~~~~~~~~~~~c~~----c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~K 322 (486)
+.+... ..+.++.|.. +.-.....|+. ||... .....|.++|+|++|.+. |.. ....|
T Consensus 627 ~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~~m~cD~~~gGCgk~n--~v~h~is~~P~vftIvle---wEk--~ETe~ 698 (806)
T KOG1887|consen 627 IVIAADSLRQLKCAFQNITFEDILKN-IRMNDKMLCDKETGGCGKAN--LVHHILSPCPPVFTIVLE---WEK--SETEK 698 (806)
T ss_pred hhccchhhhhHHHHhhhhhHHHHHHH-hhhhhhhcccccCCCCcchh--hhhhhcCCCCCeeEeeee---hhc--ccchH
Confidence 222111 0122233332 11111223443 55433 345578899999999553 322 11122
Q ss_pred c--cccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCC
Q 011408 323 I--LRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQ 400 (486)
Q Consensus 323 i--~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (486)
. .+...+..++|++.....
T Consensus 699 eI~~T~~aL~teidis~~y~~----------------------------------------------------------- 719 (806)
T KOG1887|consen 699 EISETTKALATEIDISRLYRE----------------------------------------------------------- 719 (806)
T ss_pred HHHHHHHHHHhhhhHHHHhhh-----------------------------------------------------------
Confidence 1 122233445555442211
Q ss_pred CCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEE--EeeCCCceec-ChhhhhhccCCCCCceEEEE
Q 011408 401 DGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWI--EYDDDNPLPQ-REEDITKLSGGGDWHMAYIC 477 (486)
Q Consensus 401 ~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~--~~nD~~V~~~-~~~~v~~~~~g~~~~~aYlL 477 (486)
+..+...|+|+++|.-... .++|.|+.. ..++|. ..+|..+..+ +|.+|...++... -.+=+|
T Consensus 720 ---------g~ep~t~yrLVSmv~~~e~---~~~~~C~Ay-e~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~-vrpeil 785 (806)
T KOG1887|consen 720 ---------GLEPNTKYRLVSMVGNHEE---GEEYICFAY-EPNRWVSLRHEDSQGEVVGDWKDVVRFCGERK-VRPEIL 785 (806)
T ss_pred ---------ccCcCceeEEEEEeeeccc---cceEEEeec-cCCcchhhHHHHHHhhhccchHHHHHHHhccc-ccHHHH
Confidence 1244578999999987642 689999999 888888 9999988887 7899998876543 246777
Q ss_pred EEeec
Q 011408 478 MYKAR 482 (486)
Q Consensus 478 fY~r~ 482 (486)
||++.
T Consensus 786 ~ye~~ 790 (806)
T KOG1887|consen 786 FYEAQ 790 (806)
T ss_pred HHHHH
Confidence 77763
No 86
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00026 Score=73.35 Aligned_cols=109 Identities=21% Similarity=0.200 Sum_probs=60.9
Q ss_pred cCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCC-----Cc------hhHHHHHHHHHHHHhcCCCCC--cchH
Q 011408 106 LFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVD-----QS------SHMLTVATSELFNDLDKSVKP--VAPM 172 (486)
Q Consensus 106 L~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~-----~~------~~~~~~~l~~l~~~l~~~~~~--i~p~ 172 (486)
|.|.||+||.||+||+|..+|+|+..+.+........... .. ..+...+....+......... .+-.
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 113 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT 113 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence 9999999999999999999999999887654222111100 11 112222222222222111111 1122
Q ss_pred HHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccC
Q 011408 173 QFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSV 216 (486)
Q Consensus 173 ~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~ 216 (486)
.+.+.+...... ...+....|+||++++..++-.+...+...
T Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~n~~~~l~~~~~~~~~~~ 155 (587)
T KOG1864|consen 114 QLVQSRLNNGKK--YAEFNNNDQRDAHNFLLELMAMVDDVMGVS 155 (587)
T ss_pred HHHHHHhhhhhh--hhhhhcccHhhhhhhhhhhhHHHhhhcccC
Confidence 222222222111 112236789999999999998888776543
No 87
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=7.4e-05 Score=51.31 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=55.7
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEE
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~ 69 (486)
||.+.+-- -|++.. |..++++||.|||+.|+..+|..+++-.|---+.+.+|..+|++|.|++|..+-
T Consensus 1 miev~~nDrLGKKVR-vKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~le 69 (73)
T KOG3493|consen 1 MIEVVLNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLE 69 (73)
T ss_pred CceehhhhhcCceEE-EEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEE
Confidence 45555544 378888 999999999999999999999999886665334688999999999999987653
No 88
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.38 E-value=0.001 Score=47.53 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=61.7
Q ss_pred eEEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec-----CCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK-----GGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~-----~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|+|+|+ ||+.... +.|+++.++..+|++|....|++- .|||-+. -..|.+..+|..|||=.+..|.++++-
T Consensus 1 iqVtV~q~g~~dl~-l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWI-LRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceE-EEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 567777 6889999 999999999999999999999987 8999852 258888899999999999999888764
No 89
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.34 E-value=0.0013 Score=48.42 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=60.3
Q ss_pred eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 8 WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 8 ~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
..|+++. +.+.+..++..+|.++....|+|+..|++.+.+..+.|+.++.+|+|..+..+.+...
T Consensus 7 ~~gk~~~-~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTIT-LEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEE-EEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 5789999 9999999999999999999999999999999999999999999999999988887543
No 90
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=97.32 E-value=6.5e-05 Score=73.45 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=92.6
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHH-----HhcCCCCCcchHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFN-----DLDKSVKPVAPMQF 174 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~l~~~~~~i~p~~~ 174 (486)
.+...|++-.-|.||+||.|-++|.-.....-++-..+.. .+..-.-+++.+++ -++.. ..|.....
T Consensus 365 ~gk~kgiqgh~nscyldstlf~~f~f~sv~dS~l~rrp~p-------~d~~nYse~q~~LRseiVnplr~n-~fVr~~~~ 436 (724)
T KOG3556|consen 365 EGKIKGIQGHPNSCYLDSTLFKPFEFDSVTDSTLPRRPPP-------SDSMNYSEMQHSLRSEIVNPLRRN-QFVRQNPA 436 (724)
T ss_pred hcccccccCCcchhhccccccccccccccccccccCCCCc-------ccccccHHHHHHHHHhhhchhhhc-ceeecCHH
Confidence 3456799999999999999998887665555444322111 11111222222222 12211 12211111
Q ss_pred HHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEE
Q 011408 175 WMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYA 254 (486)
Q Consensus 175 ~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~ 254 (486)
.. ++....+.........+-.|+.|||.-++..+-..... .++ ..| +.-.|+.
T Consensus 437 mk-lR~~ldql~~~sG~tceekdpEEFLn~l~t~i~rVEp~-------------------lki---saG----qd~yfyQ 489 (724)
T KOG3556|consen 437 MK-LRVELDQLNFRSGDTCEEKDPEEFLNGLKTLIARVEPK-------------------LKI---SAG----QDVYFYQ 489 (724)
T ss_pred HH-HHHHHHhhhccccCcccccCHHHHHHHHHHHhccccee-------------------eee---ccC----Cchhhhh
Confidence 11 33332222222233667889999999888877532111 011 011 1111222
Q ss_pred EEEeccCC--cchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccce
Q 011408 255 LKCHISHE--VNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLE 332 (486)
Q Consensus 255 l~l~i~~~--~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~ 332 (486)
|-+.-+++ ..++.+.+...|. ....++...|.+++||+.|| ++..|+...+--...
T Consensus 490 lFleKdekv~~p~~qqL~e~sf~----------------sS~ik~~e~pSc~iiqmprf------gk~~km~~~i~pS~~ 547 (724)
T KOG3556|consen 490 LFLEKDEKVGHPGFQQLSELSFP----------------SSSIKSTETPSCQIIQMPRF------GKSQKMPAAIGPSIS 547 (724)
T ss_pred hhhhcccccCCchHHHHhhhhcc----------------ccccccccCcchhheecccc------CcccccchhcCCceE
Confidence 22211221 1123333332221 23446788999999999999 455666555544457
Q ss_pred eccccccChh
Q 011408 333 LDVYDFCSDD 342 (486)
Q Consensus 333 Ldl~~~~~~~ 342 (486)
|++.+.....
T Consensus 548 l~Vtd~~e~~ 557 (724)
T KOG3556|consen 548 LPVTDRHEVN 557 (724)
T ss_pred eeccccccCC
Confidence 7777665443
No 91
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.27 E-value=0.001 Score=49.97 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=41.9
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe---cCCcC--CCCccccccCcCCCCeEEE
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV---KGGLL--KDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~---~~~~l--~d~~~l~~~~i~~~~~i~l 70 (486)
-|.|.-..-.+. |++++.+|+.+|+++|.+.+++|+..|.|.. ....+ .++.++.+++|+.|.-+.+
T Consensus 6 ilRvrS~dG~~R-ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 6 ILRVRSKDGMKR-IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp EEEEE-SSEEEE-EEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred EEEEECCCCCEE-EEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 466666778899 9999999999999999999999999998862 12233 4568999999999987665
No 92
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.05 E-value=0.0031 Score=50.48 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=47.1
Q ss_pred eEEEEEe-CCe-EEEEEEeCCCCCHHHHHHHHHHhh-------CCCCCceEEEecCCcCCCCccccccCcCCCCe
Q 011408 2 LTVSVKW-QKE-VFSNVEIDTSQTPYVFKCQLYDLT-------GVPPERQKIMVKGGLLKDDSDWSMLGVKQGQR 67 (486)
Q Consensus 2 ~~~~v~~-~~~-~~~~~~~~~~~tv~~lk~~l~~~~-------~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~ 67 (486)
|.|+... .|+ +.+ +.+++.+||.+||+.|...- -..+...|||+.|++|.|..+|.++.+..+..
T Consensus 3 i~lkf~l~~G~d~~~-~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 3 IELKFRLADGKDIGP-FRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp EEEEEEETTS-EEEE-EEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred EEEEEEEeCCCcccc-cccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence 3444443 676 888 99999999999999998642 22455679999999999999999998887764
No 93
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.88 E-value=0.0025 Score=45.49 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=47.1
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.|.+++.++. |.+.+..++.++.++.+..+|+.++.-.|.++++.++-+..+.-.++.+|+++-|
T Consensus 1 vi~~~~rr~~-vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFK-VKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEE-E---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEE-EEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4788999999 9999999999999999999999999999999999998888888889998887643
No 94
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.85 E-value=0.0017 Score=48.63 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=52.8
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe-c-CCcCCCCccccccCcCC
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV-K-GGLLKDDSDWSMLGVKQ 64 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~-~-~~~l~d~~~l~~~~i~~ 64 (486)
|.|+..+.++- ++..++.||.+||..|..++.-|++.|+||. . ..+|.|.++|.+.|...
T Consensus 5 ~~VrR~kttif-~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 5 LRVRRHKTTIF-TDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeeecceeEE-eecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 67888888888 9999999999999999999999999999994 3 37889999999986654
No 95
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0079 Score=55.58 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=53.7
Q ss_pred EEEEeCC----eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCcccc--ccCcCCCCeEEE
Q 011408 4 VSVKWQK----EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWS--MLGVKQGQRLMM 70 (486)
Q Consensus 4 ~~v~~~~----~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~--~~~i~~~~~i~l 70 (486)
+.|.++| -.++ |+|+.+..+.+||+.++.++|||+++.++|+.|+-|.++.++. +++..+-..||+
T Consensus 3 ~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred EEEEeCCccccCcee-EEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 4556653 4567 8999999999999999999999999999999999999999998 444444444554
No 96
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=95.96 E-value=0.015 Score=43.72 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceE---EE----ecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQK---IM----VKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qk---l~----~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+.|+|.++ |..++ +.+..+.++++|...|.+.++.+..... -| .+|..|+++.+|.+++|.+|..+++
T Consensus 3 ~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 56889997 59999 9999999999999999999988655532 23 4677899999999999999998776
No 97
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.036 Score=48.25 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=60.7
Q ss_pred CeEEEEEeCCeE--EEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecC-----CcC-CCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQKEV--FSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKG-----GLL-KDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~~~~--~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~-----~~l-~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+.+.|.++-.. .+ ..++.+.|+.+||.+|.-++|.+++.++|- +++ +.| +++..|..|+..+|..++++
T Consensus 1 ~v~v~Iss~~~~~~~E-kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTE-KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred CeEEEEecccccchhh-hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 577888886655 56 678999999999999999999999999986 433 344 56688999999999999997
Q ss_pred eccc
Q 011408 72 GTAD 75 (486)
Q Consensus 72 g~~~ 75 (486)
.+..
T Consensus 80 D~~~ 83 (234)
T KOG3206|consen 80 DSNA 83 (234)
T ss_pred ecCc
Confidence 7653
No 98
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.80 E-value=0.21 Score=35.91 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=51.1
Q ss_pred eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc-----eEEEecCCcCCCCccccccCcCCCCeEE
Q 011408 8 WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER-----QKIMVKGGLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 8 ~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~-----qkl~~~~~~l~d~~~l~~~~i~~~~~i~ 69 (486)
|+|.+|+ +.++.+.+++.|-..+.+...+..-+ -|.+-|+.+|.++..|.+++|.+|..+-
T Consensus 14 y~g~~yD-Lrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Le 79 (81)
T COG5417 14 YNGGTYD-LRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILE 79 (81)
T ss_pred cCCceEE-EeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEE
Confidence 6999999 99999999999999999877663222 2566799999999999999999987543
No 99
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.41 E-value=0.2 Score=37.71 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=42.0
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
+++|++.++|..+. +.+++..|..+|+.+|...++.+....+|.|+
T Consensus 1 ~~~vK~~~~~~~~~-~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 1 TVDVKLRYGGETRR-LSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred CccEEEEECCEEEE-EEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 46899999999999 99999999999999999999998877788775
No 100
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.14 E-value=0.02 Score=48.95 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=26.4
Q ss_pred eEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChh
Q 011408 420 VAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREE 460 (486)
Q Consensus 420 ~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~ 460 (486)
.|-|.-.| .||.+.+.+ ..+.||.+||+.+.+.++.
T Consensus 130 ~agi~~~g----~~Havfa~~-ts~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 130 HAGIFLKG----QEHAVFACV-TSDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEES----TTEEEEEEE-ETTCEEEEETTEEEE----
T ss_pred hhHheecC----CcceEEEEE-eeCcEEEecCCeeeeCCCC
Confidence 44455455 489999999 8999999999999998653
No 101
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.80 E-value=0.32 Score=36.68 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=54.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc-eEEE--ecCC-cCCCC-ccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER-QKIM--VKGG-LLKDD-SDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~-qkl~--~~~~-~l~d~-~~l~~~~i~~~~~i~l 70 (486)
..|.|+. +|++.. -.+.+++|+.+|.+-|......+... -.|+ +-.. +-.++ .+|.++++.++..+++
T Consensus 7 ~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4688888 688899 99999999999999999988887775 7776 2223 33344 7999999999888776
No 102
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=93.69 E-value=0.18 Score=39.29 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=41.6
Q ss_pred EEEEeCC--eEEEEEEeC--CCCCHHHHHHHHHHhh--CCCCCceEEEecCCcCCCCcccccc
Q 011408 4 VSVKWQK--EVFSNVEID--TSQTPYVFKCQLYDLT--GVPPERQKIMVKGGLLKDDSDWSML 60 (486)
Q Consensus 4 ~~v~~~~--~~~~~~~~~--~~~tv~~lk~~l~~~~--~vp~~~qkl~~~~~~l~d~~~l~~~ 60 (486)
|+|.+.. -... ++|+ ...||..||+.|.+.. .....++|+|+.|++|.|+..+...
T Consensus 3 l~IRFs~sipDl~-L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLP-LDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCce-eecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 5556543 2344 5566 8899999999999988 3345567899999999999776654
No 103
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.60 E-value=0.58 Score=35.12 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=54.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCCC---CccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLKD---DSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~d---~~~l~~~~i~~~~~i~l 70 (486)
..|.|+. +|+... ..+..++|+.++.+-+....+.+.....|+ +..+.+.+ +.+|.++++.++..+++
T Consensus 5 ~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 4578887 789999 999999999999999977777777778887 33445543 36899999999888776
No 104
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.59 E-value=0.34 Score=35.92 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=40.2
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
.|+|.+.+ ++- |.|.+..+..+|..+|.+.+++|++.-+|-|+.
T Consensus 4 vvKV~f~~-tIa-Irvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 4 VVKVHFKY-TVA-IQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEEEE-EEE-EEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 47888888 999 999999999999999999999999998888854
No 105
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=92.08 E-value=0.71 Score=34.79 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=37.6
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC-CceEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP-ERQKIMV 46 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~-~~qkl~~ 46 (486)
++|++.|+|..+. +.+.++.+..+|+++|.+.+++.. ..-.|-|
T Consensus 1 ~~vK~~~~~d~~r-~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 1 VRVKATYGEEKIR-FRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred CEEEEEeCCeEEE-EEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 5789999999999 999999999999999999999864 3344444
No 106
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=91.83 E-value=0.3 Score=46.89 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=51.4
Q ss_pred CCCcccCccccchhhhhHHHHHhccHH-HHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPE-LKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLR 179 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~ 179 (486)
++.+=|.=.-|.||+||++=+|-+... |+. -+++.++..+..+ +|..|...+-
T Consensus 100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~----------------------~~l~~aw~~f~~G----~~~~fVa~~Y 153 (320)
T PF08715_consen 100 NGFRVLKQSDNNCWVNAACLQLQALKIKFKS----------------------PGLDEAWNEFKAG----DPAPFVAWCY 153 (320)
T ss_dssp TTEEEE---TTTHHHHHHHHHHTTST--BSS----------------------HHHHHHHHHHHTT------HHHHHHHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHhcCCccCC----------------------HHHHHHHHHHhCC----ChHHHHHHHH
Confidence 344456666799999999876644431 211 1344444444433 5666666554
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCee
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEES 246 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s 246 (486)
.. .... .++-.||+++|..|++.+.... ...+.....|..||...
T Consensus 154 a~-~~~~-----~G~~gDa~~~L~~ll~~~~~~~----------------~~~~~~~~~~c~CG~k~ 198 (320)
T PF08715_consen 154 AS-TNAK-----KGDPGDAEYVLSKLLKDADLDY----------------SVTMTKLEVCCGCGVKQ 198 (320)
T ss_dssp HH-TT-------TTS---HHHHHHHHHTTB-TTT-----------------EEEEEEEEECTTEEEE
T ss_pred HH-cCCC-----CCCCcCHHHHHHHHHHhccccc----------------eEEEEEeeeeccCCcce
Confidence 43 2222 5688999999999987665322 23344446788998653
No 107
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=1.9 Score=33.22 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=62.2
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+++|+=. +.+.. +.|...++.+.|++.-++..|++-..-|.+|.|..+++..|-.++++.+|..|=++..
T Consensus 21 i~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 21 INLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred EEEEEecCCCCEEE-EEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 56777753 46667 8999999999999999999999999999999999999999999999999988876543
No 108
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=91.19 E-value=1.9 Score=31.97 Aligned_cols=66 Identities=6% Similarity=0.033 Sum_probs=49.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCC---CCccccccCcCCCCeEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLK---DDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~---d~~~l~~~~i~~~~~i~ 69 (486)
..|.|+. +|+... -.++.++|+.++.+-+.....- +....|+ +..+.+. .+.+|.++|+.++..++
T Consensus 3 t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEEE
Confidence 4677887 788898 9999999999999999876543 5556777 3334454 46899999999654443
No 109
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=91.11 E-value=1.5 Score=33.15 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=37.4
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
|+|+|.++|...- |.|+++.+..+|..+|.+.+++. ..-++-++
T Consensus 3 ikVKv~~~~Dv~~-i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 3 IRVKVHAQDDTRY-IMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred EEEEEEecCcEEE-EEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 7899999999999 99999999999999999999995 33334353
No 110
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=90.61 E-value=0.63 Score=42.06 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred EEEEEeCCe--EEEEEEeCCCCCHHHHHHHHH-HhhCCCCCc--eEEE--ecCCcCCCCccccccCcCCCCeEEE
Q 011408 3 TVSVKWQKE--VFSNVEIDTSQTPYVFKCQLY-DLTGVPPER--QKIM--VKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~~--~~~~~~~~~~~tv~~lk~~l~-~~~~vp~~~--qkl~--~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|++.-+++ ......++..+|+.|+++.+. ...++-+-+ |.|- .+|+.+.|+.+|.+++..+|.++.+
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 456666543 444367899999999996664 466887744 4444 5889999999999999999988776
No 111
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.13 E-value=0.77 Score=40.41 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=57.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++.+- +.+...+|+.++|.++...-|+.+-.|++.+.|+++-|...|.+++|..|+...+.+.-
T Consensus 156 ~~d~~-lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviV 219 (231)
T KOG0013|consen 156 REDFW-LTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIV 219 (231)
T ss_pred hhhee-ecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEe
Confidence 56667 78889999999999999999999999999999999999999999999999887775544
No 112
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=90.11 E-value=0.96 Score=33.84 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=38.9
Q ss_pred eEEEEEeCCeEEEEEEeC-CCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 2 LTVSVKWQKEVFSNVEID-TSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~-~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
+.|++.|+|..+. +.+. ...+..+|+++|.+.++.+....++-|+
T Consensus 1 ~~vK~~~~~~~~~-~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 1 VRVKVKYGGEIRR-FVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred CcEEEEecCCCEE-EEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 4689999999999 9998 9999999999999999998755555553
No 113
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.95 E-value=2.3 Score=31.77 Aligned_cols=66 Identities=9% Similarity=0.139 Sum_probs=51.4
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCCC---CccccccCcCCCCeEEE
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLKD---DSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~d---~~~l~~~~i~~~~~i~l 70 (486)
.|.|+. +|+... -.++.++|+.++.+-+....+.+ ....|+ +..+.+.+ +.+|.++++.++..+++
T Consensus 6 ~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 577885 789998 89999999999999998765543 556777 44455543 37999999999888776
No 114
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.91 E-value=1.6 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=33.8
Q ss_pred eEEEEEeCCeEEEEEEeCC--CCCHHHHHHHHHHhhCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDT--SQTPYVFKCQLYDLTGVP 38 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~--~~tv~~lk~~l~~~~~vp 38 (486)
++|++.|+|.+.. +.+++ ..+..+|++.+...++++
T Consensus 1 V~vKaty~~d~~r-f~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQS-FLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEE-EEecCCCCCCHHHHHHHHHHHhCCC
Confidence 5799999999999 99999 679999999999999999
No 115
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.84 E-value=3.4 Score=31.06 Aligned_cols=68 Identities=10% Similarity=0.182 Sum_probs=54.8
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcC---CCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLL---KDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l---~d~~~l~~~~i~~~~~i~l~ 71 (486)
-.|.|+. +|+..+ -.+....++.++..-+.. -|.+++..+|+ +--+.+ +-+.+|.++|+.+...+.+.
T Consensus 6 t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQ-IALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 3578888 799999 999999999999999888 58899999999 322333 33479999999999888773
No 116
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=89.62 E-value=1.8 Score=32.52 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=41.0
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
++.|++.|+|.....+.+....+..+|...|.+.++.++...++.|+
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 57899999986665489999999999999999999999888888874
No 117
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=88.77 E-value=3.6 Score=30.72 Aligned_cols=64 Identities=5% Similarity=0.003 Sum_probs=48.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCC-CCceEEE--ecCCcC-CCCccccccCcCCCC
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVP-PERQKIM--VKGGLL-KDDSDWSMLGVKQGQ 66 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp-~~~qkl~--~~~~~l-~d~~~l~~~~i~~~~ 66 (486)
..|.|+. +|+... -.++.++||.++.+-+....+.+ .....|+ +-.+.+ +++.+|.++|+.+..
T Consensus 5 t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 5 TSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred eEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 4678887 789999 99999999999999999876543 3445676 334444 446899999998744
No 118
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.74 E-value=5 Score=30.45 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=51.9
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCC--------CCccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLK--------DDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~--------d~~~l~~~~i~~~~~i~l 70 (486)
+.|.|+. +|+... -.+..++|+.++..-+... +..++...|+ +--+.+. .+.+|.+.|+.+...+++
T Consensus 5 ~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 5 VKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 5677887 789998 8999999999999999754 5566888888 3224553 357999999998776665
No 119
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=86.98 E-value=1.6 Score=32.17 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=38.3
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
++++|+++|.+=. +.++..-+-..|.++|..++++|++.--+-|
T Consensus 1 ~~fKv~~~g~~RR-f~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 1 TQFKSSFLGDTRR-IVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred CeEEEEeCCceEE-EecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 4789999999999 9999999999999999999999998743334
No 120
>PRK06437 hypothetical protein; Provisional
Probab=86.79 E-value=3.4 Score=29.72 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=40.9
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+|. +++..+ +++....|+.+|-+++ |++++.--+...|.++..+ ..+++|..+-++
T Consensus 5 ~~v~-g~~~~~-~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~~~-----~~L~dgD~Veiv 61 (67)
T PRK06437 5 IRVK-GHINKT-IEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVLED-----HNVKKEDDVLIL 61 (67)
T ss_pred EEec-CCcceE-EEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCc-----eEcCCCCEEEEE
Confidence 3444 667788 8889999999887664 8888777666788777633 356677776653
No 121
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=86.16 E-value=3.2 Score=30.15 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=41.3
Q ss_pred CeEEEEEeCCe--EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQKE--VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~~~--~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|..++|+.+|+ ... +++....|+.+|.+++ +++++.-.+..++.++..+ ..+++|..+-+
T Consensus 2 ~~mm~v~vng~~~~~~-~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~-----~~l~~gD~Vei 63 (70)
T PRK08364 2 MLMIRVKVIGRGIEKE-IEWRKGMKVADILRAV----GFNTESAIAKVNGKVALED-----DPVKDGDYVEV 63 (70)
T ss_pred ceEEEEEEeccccceE-EEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCC-----cCcCCCCEEEE
Confidence 34467777777 667 8888899999988776 7777554445677766443 34666776655
No 122
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=85.85 E-value=3.9 Score=31.47 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=36.9
Q ss_pred eEEEEEeCCeEEEEEEeCC-----CCCHHHHHHHHHHhhCCCCCce-EEEec
Q 011408 2 LTVSVKWQKEVFSNVEIDT-----SQTPYVFKCQLYDLTGVPPERQ-KIMVK 47 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~-----~~tv~~lk~~l~~~~~vp~~~q-kl~~~ 47 (486)
+.|+|+|+|...- +.+.. +.+..+|+.+|.+.|+++++.. .|-|+
T Consensus 1 l~vKv~y~~~~rR-f~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 1 LVVKVKYGGTLRR-FTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred CEEEEEeCCEEEE-EEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 3689999999888 88875 7999999999999999988544 34353
No 123
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=85.45 E-value=8.9 Score=28.71 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=53.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcC---CCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLL---KDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l---~d~~~l~~~~i~~~~~i~l 70 (486)
++|.|+. +|+... -.+..++++.++..-+... |.+++..+|+ +--+.+ +.+.+|.++|+.++..+.+
T Consensus 5 ~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 5 SKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 4677887 788888 8999999999999999765 8888889998 333444 2346999999998887776
No 124
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=82.33 E-value=2.4 Score=36.66 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=16.0
Q ss_pred CcccCccccchhhhhHHHHHhcc
Q 011408 103 SAGLFNLGNTCYMNSTIQCLHSV 125 (486)
Q Consensus 103 ~~GL~N~GNtCY~NSvLQ~L~~~ 125 (486)
..|+.|.+|+||+||++|.+...
T Consensus 33 ft~~PN~~dnCWlNaL~QL~~~~ 55 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLFRYV 55 (193)
T ss_dssp EE----SSSTHHHHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHHHHc
Confidence 45999999999999999987544
No 125
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=79.90 E-value=6.1 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.7
Q ss_pred EEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 6 VKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 6 v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
+.| ||++.- |.|+.+.+..+|++++++.++++.. ..+-|
T Consensus 17 l~Y~GG~tr~-i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRI-VSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEE-EEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 456 789999 9999999999999999999999877 55544
No 126
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=78.55 E-value=6.7 Score=29.32 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=37.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc-eEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER-QKIMV 46 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~-qkl~~ 46 (486)
|++++.|+|.... ..+++..+..+|.+++.+.+..+.++ -.+-+
T Consensus 1 i~~K~~y~gdi~i-t~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw 45 (83)
T cd06404 1 VRVKAAYNGDIMI-TSIDPSISLEELCNEVRDMCRFHNDQPFTLKW 45 (83)
T ss_pred CeEEEEecCcEEE-EEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 5789999999999 99999999999999999999986653 34444
No 127
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.99 E-value=11 Score=26.44 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=52.8
Q ss_pred EeCCeEEEEEEeCCCCCHHHHHHHHHHhh---CCCCCceEEE-ecCCcCCCCccccccCcCCCCeEEE
Q 011408 7 KWQKEVFSNVEIDTSQTPYVFKCQLYDLT---GVPPERQKIM-VKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 7 ~~~~~~~~~~~~~~~~tv~~lk~~l~~~~---~vp~~~qkl~-~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.-+|+..+ ++.+...+.....++..+.+ |-|++.=.+- -.|.+++-+..+.++++..+.++.+
T Consensus 2 vVNGqPv~-VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFL 68 (76)
T PF10790_consen 2 VVNGQPVQ-VEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFL 68 (76)
T ss_pred eeCCCcee-eecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEE
Confidence 45788889 99999999999998888876 4477777776 4677888889999999999999877
No 128
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=73.40 E-value=8 Score=28.64 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=41.2
Q ss_pred eCCCCCHHHHHHHHHHhhCC-CCCceEEEecCCcCCCCcccccc-CcCCCCeEEEee
Q 011408 18 IDTSQTPYVFKCQLYDLTGV-PPERQKIMVKGGLLKDDSDWSML-GVKQGQRLMMMG 72 (486)
Q Consensus 18 ~~~~~tv~~lk~~l~~~~~v-p~~~qkl~~~~~~l~d~~~l~~~-~i~~~~~i~l~g 72 (486)
|+++++|.|+++.|...... .--.-.|.++|..|+|-..+.++ ++++|..+.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 57889999999999886433 22223556899999888888776 688888888754
No 129
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=72.54 E-value=11 Score=32.20 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=36.1
Q ss_pred eEEEEEe-CC----eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 2 LTVSVKW-QK----EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 2 ~~~~v~~-~~----~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
|+|.|.. .| .++. +.+...+||.+|+..|.+..++|+..|-.+
T Consensus 1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L 48 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSERLPIPSSSQLYL 48 (162)
T ss_pred CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhhcCCCccceeEE
Confidence 4566665 66 6888 999999999999999999999999997433
No 130
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=71.27 E-value=21 Score=26.98 Aligned_cols=63 Identities=11% Similarity=0.287 Sum_probs=43.0
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+.++|.-||+.++ +....|+.+|.++ +++++..--+-.++.++.-+ ......+++|..+-++
T Consensus 16 ~~~m~I~VNG~~~~---~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~-~w~~t~L~egD~IEIv 78 (84)
T PRK06083 16 MVLITISINDQSIQ---VDISSSLAQIIAQ----LSLPELGCVFAINNQVVPRS-EWQSTVLSSGDAISLF 78 (84)
T ss_pred CceEEEEECCeEEE---cCCCCcHHHHHHH----cCCCCceEEEEECCEEeCHH-HcCcccCCCCCEEEEE
Confidence 45688999999888 4567788887765 47776555455677666433 4556667777776553
No 131
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=69.51 E-value=1.8 Score=40.98 Aligned_cols=64 Identities=22% Similarity=0.227 Sum_probs=47.4
Q ss_pred EEEEEeCCeEEEE--EEeCCCCCHHHHHHHHHHhhCC-C-CCceEEEecCCcCCCCccccccCcCCCC
Q 011408 3 TVSVKWQKEVFSN--VEIDTSQTPYVFKCQLYDLTGV-P-PERQKIMVKGGLLKDDSDWSMLGVKQGQ 66 (486)
Q Consensus 3 ~~~v~~~~~~~~~--~~~~~~~tv~~lk~~l~~~~~v-p-~~~qkl~~~~~~l~d~~~l~~~~i~~~~ 66 (486)
++.||-..+.|.+ |+.+...||.+||+-++...-- | +.+|||+|.|+.|.|...+++.-.|..+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k 78 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVK 78 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHH
Confidence 4556654444422 6678889999999999987644 3 3569999999999999988887665543
No 132
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=65.72 E-value=29 Score=24.58 Aligned_cols=58 Identities=10% Similarity=0.263 Sum_probs=40.0
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|+.+|+.++ +....|+.++.++ +++++++--+-+.+.++.-. ...+..+++|..+-+
T Consensus 2 ~i~vNG~~~~---~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei 59 (66)
T PRK05659 2 NIQLNGEPRE---LPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEI 59 (66)
T ss_pred EEEECCeEEE---cCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEE
Confidence 6888999877 5567888887754 58888777666777666533 234445777777655
No 133
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=63.31 E-value=33 Score=24.24 Aligned_cols=58 Identities=16% Similarity=0.383 Sum_probs=39.4
Q ss_pred EEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 6 VKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 6 v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|.-+|+.++ +....|+.+|.+++ +++++.-.+.+.|.++..+ ...+..+++|..+-++
T Consensus 2 i~iNg~~~~---~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii 59 (65)
T cd00565 2 ITVNGEPRE---VEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIV 59 (65)
T ss_pred EEECCeEEE---cCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEE
Confidence 556788877 55678999888776 5777666666777766554 3444457778777663
No 134
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=62.79 E-value=32 Score=24.30 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=37.8
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|.-||+.++ + + ..|+.+|.+++ +++++.-.+-..+.++.-+ ...+..+++|..+-++
T Consensus 2 ~i~~Ng~~~~-~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~-~~~~~~L~dgD~Ieiv 59 (65)
T PRK06488 2 KLFVNGETLQ-T--E-ATTLALLLAEL----DYEGNWLATAVNGELVHKE-ARAQFVLHEGDRIEIL 59 (65)
T ss_pred EEEECCeEEE-c--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCccccCCCCEEEEE
Confidence 6778999988 6 3 46898888765 6666443344666666532 3445567778776654
No 135
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=61.74 E-value=14 Score=33.53 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred EEEEEeC--C----eEEEEEEeCCCCCHHHHHHHHHHhhCCCCC---ceEEE--ecC---CcCCCCcccccc
Q 011408 3 TVSVKWQ--K----EVFSNVEIDTSQTPYVFKCQLYDLTGVPPE---RQKIM--VKG---GLLKDDSDWSML 60 (486)
Q Consensus 3 ~~~v~~~--~----~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~---~qkl~--~~~---~~l~d~~~l~~~ 60 (486)
+|+|.|- + +.++ +-|+.+.||.||.+.+..+.+++.+ .-|++ +.+ +++..+..+..+
T Consensus 20 ~~kv~w~~~~~~~~~~~~-~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 20 QFKVTWLNDGLKEEQEYE-LLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEEEE-TTS-EE-EEE-E--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEEECCCCcceeEEE-EEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 5777773 2 4688 9999999999999999999999776 33444 333 456666666664
No 136
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=61.14 E-value=11 Score=32.31 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=26.6
Q ss_pred EeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCcee
Q 011408 419 LVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLP 456 (486)
Q Consensus 419 L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~ 456 (486)
..|+||+.++ |++|..| -++.||-+|=..-.+
T Consensus 99 ~~gfI~N~~~-----HWf~iRk-i~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICNLSR-----HWFAIRK-IGGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEECTT-----EEEEEEE-ETTEEEEECTTTSS-
T ss_pred ceEEEeccCc-----ceEEEEe-eCCeeEeccCCCCCC
Confidence 4899999776 9999999 899999998765544
No 137
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=60.64 E-value=45 Score=23.64 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=41.5
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|.-||+.++ + ....|+.+|.++ .+++++.--+...+.+++.+.- ... +++|..+-++
T Consensus 2 ~i~vNG~~~~-~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv 59 (65)
T PRK05863 2 IVVVNEEQVE-V--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVV 59 (65)
T ss_pred EEEECCEEEE-c--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEE
Confidence 5777999888 4 467788777664 5888887777788887766533 334 8888877653
No 138
>PF14353 CpXC: CpXC protein
Probab=60.34 E-value=16 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=26.3
Q ss_pred EEEeCCCCCeeeecCceEEEEEeccCCcchHHHHHHhhhhhhhh-hcCcccCCcce
Q 011408 236 RVHCQESGEESSETESIYALKCHISHEVNHLHEGLKHGLKSELE-KASPALGRSAV 290 (486)
Q Consensus 236 ~~~C~~c~~~s~~~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~-~~c~~c~~~~~ 290 (486)
+++|+.|++..... -+ -+++..... +..+.-+++++- ..|+.||....
T Consensus 1 ~itCP~C~~~~~~~-v~--~~I~~~~~p----~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-VW--TSINADEDP----ELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEE-EE--eEEcCcCCH----HHHHHHHcCCcCEEECCCCCCcee
Confidence 36899999874222 11 223332221 223333455544 58999998653
No 139
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=59.86 E-value=39 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=35.4
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC-ceEEE-ecC
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE-RQKIM-VKG 48 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~-~qkl~-~~~ 48 (486)
|.|.....+|.-+++..+.||.++-.+|..++.+++. ..+|. .++
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 5666667777559999999999999999999999874 44554 344
No 140
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=59.14 E-value=30 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=37.0
Q ss_pred EEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 5 SVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 5 ~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
.|.. +|+.-. |.|-+..|+.|+...+++.-|+.++.-.+...|
T Consensus 3 ~V~LPng~~t~-V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTV-VPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4444 677777 999999999999999999999999999888654
No 141
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=56.88 E-value=25 Score=27.14 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecC
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKG 48 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~ 48 (486)
.++. +.|++.+|=.++|+.+.++|||.++.-..+ .+|
T Consensus 22 nk~v-F~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 22 NKYV-FIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 6788 999999999999999999999999998766 444
No 142
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=56.49 E-value=14 Score=18.97 Aligned_cols=15 Identities=40% Similarity=1.252 Sum_probs=11.7
Q ss_pred EEEEccCCeEEEeeCC
Q 011408 437 AWVKQESGKWIEYDDD 452 (486)
Q Consensus 437 a~vk~~~~~W~~~nD~ 452 (486)
.|++ .++.||.|++.
T Consensus 2 ~W~~-~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQ-DNGNWYYFDSD 16 (19)
T ss_dssp EEEE-ETTEEEEETTT
T ss_pred cCEE-ECCEEEEeCCC
Confidence 4677 67999999875
No 143
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.20 E-value=21 Score=33.96 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=43.2
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEe---cCC-----cCCCCccccccCcCCCCeEEEe
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMV---KGG-----LLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~---~~~-----~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.-|.-+-||.||++.+..+.|+.+.++||.+ .|+ -+.-.+.|..++|.+|..+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 6677888999999999999999999999984 222 2223356677788888877763
No 144
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=55.68 E-value=41 Score=25.57 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=34.6
Q ss_pred EEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC---ceEEEe
Q 011408 4 VSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE---RQKIMV 46 (486)
Q Consensus 4 ~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~---~qkl~~ 46 (486)
++++- +|.++. +.+.+++.+.+|+..|...+|+..+ .-.|.|
T Consensus 3 FK~~~~~GrvhR-f~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHR-FRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEE-EEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 44454 689999 9999999999999999999999885 445555
No 145
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=55.40 E-value=46 Score=23.43 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=36.7
Q ss_pred EeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 7 KWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 7 ~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.-+|+.++ +....|+.+|.+.+ +++++.--+...+.++..+ ...+..+++|..+-++
T Consensus 2 ~iNg~~~~---~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii 58 (64)
T TIGR01683 2 TVNGEPVE---VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIV 58 (64)
T ss_pred EECCeEEE---cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEE
Confidence 45788777 46677898887754 6776555555777666433 2344457777776653
No 146
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=54.03 E-value=34 Score=24.94 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=34.2
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
-|+..|+|++.- |.+.+--...|+.+++-+.||-+.+-
T Consensus 2 RiKfE~~gEKRI-i~f~RPvkf~dl~~kv~~afGq~mdl 39 (79)
T cd06405 2 RIKFEHNGEKRI-IQFPRPVKFKDLQQKVTTAFGQPMDL 39 (79)
T ss_pred eEEEEecCceEE-EecCCCccHHHHHHHHHHHhCCeeeE
Confidence 477788999999 99999999999999999999987654
No 147
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=52.74 E-value=29 Score=36.95 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=37.8
Q ss_pred eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCc
Q 011408 8 WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGL 50 (486)
Q Consensus 8 ~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~ 50 (486)
-+...+. +.++++.|...|+..|...||||.+.|.|++.++.
T Consensus 322 ~~~~~~~-~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 322 VQATSHE-YYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred ccceEEE-EecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3568888 99999999999999999999999999999987653
No 148
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=52.74 E-value=18 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=28.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
.|...+ +.|++.+|+.++-.+++...|+....
T Consensus 5 D~~~~~-~~v~~~~t~~~l~~~v~~~l~l~e~~ 36 (80)
T PF09379_consen 5 DGTTKT-FEVDPKTTGQDLLEQVCDKLGLKEKE 36 (80)
T ss_dssp SEEEEE-EEEETTSBHHHHHHHHHHHHTTSSGG
T ss_pred CCCcEE-EEEcCCCcHHHHHHHHHHHcCCCCcc
Confidence 678888 99999999999999999999996433
No 149
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=52.68 E-value=64 Score=23.62 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=37.1
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCC----CCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGV----PPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~v----p~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
..... ++++...|+.+|.++|.+.++- ....-.+...+...+.+ ..+++|..+.++
T Consensus 15 ~~~~~-~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~-----~~l~~gD~v~i~ 74 (80)
T cd00754 15 KDEEE-LELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD-----TPLKDGDEVAII 74 (80)
T ss_pred CceEE-EECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC-----cccCCCCEEEEe
Confidence 34456 8888899999999999988643 12222334667666533 357778877763
No 150
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=52.03 E-value=36 Score=25.27 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 12 VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 12 ~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
|+. |.+.+..+..+|...|++++..|++.-+|-|+.
T Consensus 8 TVa-i~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVA-LRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEE-EEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 556 788999999999999999999999999999853
No 151
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=50.72 E-value=70 Score=24.26 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=53.4
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQR 67 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~ 67 (486)
|.++|.- .|.+.- +.|-...+...|.+.-+...|-.....|.++.|..++-+++-.++++-++..
T Consensus 25 inLkvv~qd~telf-FkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~ 90 (103)
T COG5227 25 INLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDE 90 (103)
T ss_pred cceEEecCCCCEEE-EEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchH
Confidence 3455553 456677 8899999999999999999999999999999999998888888887766543
No 152
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=47.21 E-value=34 Score=26.31 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=34.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCCc
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGGL 50 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~~ 50 (486)
..+. +.|++.+|=.++|+.|..++||++..-+-+ +.|+.
T Consensus 21 n~~t-F~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYT-FEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEE-EEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEE-EEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 5788 999999999999999999999999998766 55543
No 153
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=46.44 E-value=53 Score=25.33 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=33.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecC
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKG 48 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~ 48 (486)
..++. +.|++.+|=.++|+.+..++||++..-+-+ ..|
T Consensus 20 ~n~~~-F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 20 QNKYV-FEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred CCEEE-EEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 46889 999999999999999999999999998765 444
No 154
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=45.75 E-value=53 Score=24.43 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=40.3
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe--cCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV--KGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~--~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+..++= |-. .+..+|+.+.++.++++.+.-+|.. -|-.++|+..+.. +.++..+|++...
T Consensus 12 r~~k~G-v~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~L~~g 73 (78)
T PF02017_consen 12 RSVKKG-VAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEKG 73 (78)
T ss_dssp SSCEEE-EEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEEEESS
T ss_pred CCceEe-EEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEEECCC
Confidence 345554 544 6899999999999999988787764 4555565655544 5566777765543
No 155
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=45.02 E-value=1e+02 Score=22.84 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=38.6
Q ss_pred CeEEEEEe--------CCeEEEEEEeCCCCCHHHHHHHHHHhhC-CCCCce--EEEecCCcCCCCccccccCcCCCCeEE
Q 011408 1 MLTVSVKW--------QKEVFSNVEIDTSQTPYVFKCQLYDLTG-VPPERQ--KIMVKGGLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 1 ~~~~~v~~--------~~~~~~~~~~~~~~tv~~lk~~l~~~~~-vp~~~q--kl~~~~~~l~d~~~l~~~~i~~~~~i~ 69 (486)
|++|+|++ +....+ +++....|+.+|++.|..... ....+. .+..++....++ .-+++|..+.
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~-~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVa 74 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMT-LELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELA 74 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEE-EECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEE
Confidence 67788875 224556 788889999999999977641 111011 123455554333 3466677766
Q ss_pred E
Q 011408 70 M 70 (486)
Q Consensus 70 l 70 (486)
+
T Consensus 75 i 75 (82)
T PLN02799 75 I 75 (82)
T ss_pred E
Confidence 5
No 156
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=44.55 E-value=20 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=25.7
Q ss_pred cCcccCCcceEeeeeEe--cccCCceEEEEEEEEE
Q 011408 281 ASPALGRSAVYLKESCI--NGLPRYLTIQFVRFFW 313 (486)
Q Consensus 281 ~c~~c~~~~~~~k~~~i--~~lP~~L~i~l~Rf~~ 313 (486)
.|++|+......+.... ..+.+++-||.++|.-
T Consensus 6 kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 6 KCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred cCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 49999987665555544 4788999999999973
No 157
>PRK07440 hypothetical protein; Provisional
Probab=44.55 E-value=1.2e+02 Score=21.95 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=38.9
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.++|+-+|+.++ +....|+.+|.+ .++++++.--+-..+.++.-+ ...+..+++|..+-+
T Consensus 4 ~m~i~vNG~~~~---~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEI 63 (70)
T PRK07440 4 PITLQVNGETRT---CSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEI 63 (70)
T ss_pred ceEEEECCEEEE---cCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEE
Confidence 378888999877 567788887765 446766544444667666532 344455777776554
No 158
>PRK01777 hypothetical protein; Validated
Probab=44.53 E-value=1e+02 Score=23.91 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=39.4
Q ss_pred CeEEEEEeC----CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc-------eEEEecCCcCCCCccccccCcCCCCeEE
Q 011408 1 MLTVSVKWQ----KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER-------QKIMVKGGLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 1 ~~~~~v~~~----~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~-------qkl~~~~~~l~d~~~l~~~~i~~~~~i~ 69 (486)
||+|.|.|. ..... +++....||.|.-+++ |++.+. -.+.+.|+..+-|.. +++|..+-
T Consensus 3 ~i~v~V~ya~~~~~~~~~-l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~-----L~dGDRVe 72 (95)
T PRK01777 3 KIRVEVVYALPERQYLQR-LTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDV-----LRDGDRVE 72 (95)
T ss_pred eeEEEEEEECCCceEEEE-EEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCc-----CCCCCEEE
Confidence 688999983 24456 8999999999987766 555442 244466665554433 55566665
Q ss_pred E
Q 011408 70 M 70 (486)
Q Consensus 70 l 70 (486)
+
T Consensus 73 I 73 (95)
T PRK01777 73 I 73 (95)
T ss_pred E
Confidence 5
No 159
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.47 E-value=55 Score=30.50 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=54.1
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--e-cCCcCCCC--ccccccCcCCCCeEEE
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--V-KGGLLKDD--SDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~-~~~~l~d~--~~l~~~~i~~~~~i~l 70 (486)
.|.|++ .|++.. ..++...|..++...+....++.++-..++ + +--.-.|| .+|..+++-+...+.+
T Consensus 212 rlQiRl~DG~Tl~-~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLT-QTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeee-eecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 478898 899999 999999999999999999999988777777 3 33333444 6788888888877665
No 160
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=44.32 E-value=70 Score=23.92 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=34.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCC-CCCceEEE-ec-C--CcCCCC
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGV-PPERQKIM-VK-G--GLLKDD 54 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~v-p~~~qkl~-~~-~--~~l~d~ 54 (486)
.-.+ +-|.++.|..++-..++++|.| .|+...|. ++ | ..|.||
T Consensus 14 t~KT-L~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 14 TGKT-LLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeee-eecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 4557 9999999999999999999999 77777776 33 3 366666
No 161
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=43.99 E-value=28 Score=28.76 Aligned_cols=34 Identities=15% Similarity=0.603 Sum_probs=27.5
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCc
Q 011408 415 GIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNP 454 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V 454 (486)
..++|.|||-+- ++|++|+++.+++|.+.-...+
T Consensus 34 s~WrlqGiVg~~------~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 34 SQWRLQGIVGQG------DRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred ccceEccEECCC------CcEEEEEECCCCCeEEeccCCC
Confidence 469999998643 4999999999999998866543
No 162
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=43.94 E-value=54 Score=29.09 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=32.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
+.|.|.. +|.+.. |.+++..|+.++...++...|++.
T Consensus 4 ~~~~V~l~dg~~~~-~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 4 RVLKVYLLDGTTLE-FEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEEecCCCEEE-EEECCCCCHHHHHHHHHHHhCCCc
Confidence 4566776 678888 999999999999999999999953
No 163
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=43.67 E-value=71 Score=31.10 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=60.3
Q ss_pred eEEEEEeCC-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC--ccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQK-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD--SDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~--~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|++.-++ +++. |.+...-....|+..+...+|++.+.--+++++..+.++ ..+..++++.+..+++=...
T Consensus 3 ~tvs~~l~~~~~~~-i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 3 LTVSVALNFEKKFP-IPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred EEEEEEecceeeec-cccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 456666555 6777 999999999999999999999999999999988877766 67889999999999884444
No 164
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=43.62 E-value=78 Score=25.75 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=34.1
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCcccccc
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSML 60 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~ 60 (486)
+-|+.+.||.+|...|....+++++.-=|.+++.+...+.++.++
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 369999999999999999999999983233555555555566644
No 165
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=43.34 E-value=1.3e+02 Score=21.93 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCC-CCccccccCcCCCCeEEE
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLK-DDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~-d~~~l~~~~i~~~~~i~l 70 (486)
+..|..++|..........+-.++.|+||+...-++-+.|+-- ..++-..+-++-|..+.+
T Consensus 14 ~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrl 75 (82)
T cd01766 14 KLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRL 75 (82)
T ss_pred CCcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeee
Confidence 4677668999999999999999999999999998886554432 234555555555655554
No 166
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.46 E-value=56 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=31.5
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
.+|. +.|++.+|=.++|+.+..+|||.+..-+-+
T Consensus 15 n~y~-F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLT-FIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5889 999999999999999999999999888765
No 167
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=42.22 E-value=1.3e+02 Score=21.81 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCc-CCCCccccccCcCCCCeEEE
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGL-LKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~-l~d~~~l~~~~i~~~~~i~l 70 (486)
...|..++|..+.......+-.++.|.||+...-++-..|+ +...++....-++-|..+.+
T Consensus 14 ~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 14 KLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp TS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred CCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 47777689999999999999999999999999888754432 23334555555555554433
No 168
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.21 E-value=68 Score=24.24 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=28.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCC--CceEEE
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPP--ERQKIM 45 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~--~~qkl~ 45 (486)
+...+ |.|+.++|..++-..+.++++++. +.-.|+
T Consensus 15 ~~~kt-i~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 15 GTYKT-LRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CcEEE-EEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 34456 999999999999999999999975 344555
No 169
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=41.77 E-value=1.2e+02 Score=21.58 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=37.4
Q ss_pred EEEeCCeEEEEEEeCCC-CCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTS-QTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~-~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|+-+|+.++ + ... .|+.+|.+ ..++++..--+-..+.++.-+ ......+++|..+-+
T Consensus 2 ~I~vNG~~~~-~--~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEI 60 (67)
T PRK07696 2 NLKINGNQIE-V--PESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEI 60 (67)
T ss_pred EEEECCEEEE-c--CCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEE
Confidence 5778999887 4 343 57777665 457776655455677666543 355556777776654
No 170
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=41.21 E-value=70 Score=23.77 Aligned_cols=52 Identities=10% Similarity=0.228 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhhCCCCCceEEEe--cCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 21 SQTPYVFKCQLYDLTGVPPERQKIMV--KGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 21 ~~tv~~lk~~l~~~~~vp~~~qkl~~--~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
..+..+|+.+.++.+++|...-++.. -|-.++|+..+.. +.++..+|+++..
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~l~~g 73 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLMLLEPG 73 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEEECCC
Confidence 46799999999999999977777763 4556666655554 4567777775543
No 171
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.99 E-value=59 Score=24.59 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=31.6
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
.+|. +.|++.++=.++|+.+..+|||++..-+-+
T Consensus 22 n~y~-F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLT-FIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 6889 999999999999999999999999988766
No 172
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=39.04 E-value=1.2e+02 Score=22.72 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCC--CCceEEE
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVP--PERQKIM 45 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp--~~~qkl~ 45 (486)
+...+ |.|+.++|..++.+.+.+++++. ++.-.|+
T Consensus 12 ~~~kt-i~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKT-LRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEE-EEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 34456 99999999999999999999997 4444554
No 173
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=38.68 E-value=55 Score=28.10 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=30.8
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
+.|+++-||+.++ +++++..+..++.... .++|+..
T Consensus 7 ~~i~~~vNG~~~~-~~~~~~~~Ll~~LR~~-gltgtK~ 42 (159)
T PRK09908 7 ITIECTINGMPFQ-LHAAPGTPLSELLREQ-GLLSVKQ 42 (159)
T ss_pred eeEEEEECCEEEE-EecCCCCcHHHHHHHc-CCCCCCC
Confidence 5688899999999 9999999999999875 7777644
No 174
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=38.66 E-value=10 Score=35.96 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHH----------hhCCCCCceE-----EEecCCcCCCCccccccCcC------CC-----CeEEEeecc
Q 011408 21 SQTPYVFKCQLYD----------LTGVPPERQK-----IMVKGGLLKDDSDWSMLGVK------QG-----QRLMMMGTA 74 (486)
Q Consensus 21 ~~tv~~lk~~l~~----------~~~vp~~~qk-----l~~~~~~l~d~~~l~~~~i~------~~-----~~i~l~g~~ 74 (486)
+.+|.|+|.+++. .+++|.+.-| |+++.+.+-|..++.++.-. .| ..+|++|.+
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 5889999999999 8999999998 99877766666666654222 11 237777776
Q ss_pred cc
Q 011408 75 DE 76 (486)
Q Consensus 75 ~~ 76 (486)
..
T Consensus 183 ~~ 184 (309)
T PF12754_consen 183 AV 184 (309)
T ss_dssp --
T ss_pred cc
Confidence 43
No 175
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=36.45 E-value=2e+02 Score=29.56 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=56.7
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCC---CCceEEE----ecCCcCCCCccccccCcCCCCeEEEee
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVP---PERQKIM----VKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp---~~~qkl~----~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
-++|.......+ +-+..+.++.||.-.|..+.+-. +..+.-| ..|..++.+.++.+.++.+|...++..
T Consensus 4 RVtV~~~~~~~D-laLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 4 RVTVLAGRRAVD-VALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEeeCCeeee-eecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 478888888889 99999999999999999998762 1223333 356799999999999999999999954
No 176
>smart00455 RBD Raf-like Ras-binding domain.
Probab=36.12 E-value=89 Score=22.62 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
+|+... |.+-+..|+.|+...++++-|+.++.-.+...|
T Consensus 8 ~~~~~~-V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 8 DNQRTV-VKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCCEEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 577778 999999999999999999999999988887644
No 177
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=35.66 E-value=95 Score=23.41 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 13 FSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 13 ~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.. ..++-..++..||+.|...+++.-....+|...-.|.++.+|-+-+++..-.+-+
T Consensus 5 I~-q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQl 61 (88)
T PF11620_consen 5 IM-QHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQL 61 (88)
T ss_dssp EE-EEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEE
T ss_pred EE-EEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEE
Confidence 44 6788899999999999999999999999998776699999999988877554443
No 178
>CHL00030 rpl23 ribosomal protein L23
Probab=35.48 E-value=82 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=33.5
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCC
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGG 49 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~ 49 (486)
..+|. +.|++.+|=.++|+.++.+|||.+..-.-+ .+|+
T Consensus 19 ~n~y~-F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYT-FDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEE-EEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 46889 999999999999999999999999887765 4443
No 179
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=35.38 E-value=65 Score=29.23 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=30.9
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
..|++..||+.++ +++++..++.++...-..++|++.
T Consensus 50 ~~i~~~VNG~~~~-~~v~~~~tLLd~LR~~l~ltGtK~ 86 (217)
T PRK11433 50 SPVTLKVNGKTEQ-LEVDTRTTLLDALREHLHLTGTKK 86 (217)
T ss_pred ceEEEEECCEEEE-EecCCCCcHHHHHHHhcCCCCCCC
Confidence 4588899999999 999999999998887666777653
No 180
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=10 Score=39.13 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=27.1
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSA 131 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~ 131 (486)
....|+.+.+|+|+||+.+|.++.++.|.-.
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~ 105 (492)
T KOG1867|consen 75 LEHSGNKKHNNTIDVNNGLLYCFACPDFIYD 105 (492)
T ss_pred ccccccccccccceeehhhheeccCCcEeec
Confidence 4578999999999999999999999977554
No 181
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.03 E-value=20 Score=35.09 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCC
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSG 139 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~ 139 (486)
.|+|+.|.||.|..+|..|.+.+..++...+-......
T Consensus 177 t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~ 214 (420)
T KOG1871|consen 177 TPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTD 214 (420)
T ss_pred cccccccccccccccchhhcccccCchhhhcCCcccCc
Confidence 68999999999999999999999999998876655443
No 182
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=33.06 E-value=1.1e+02 Score=24.15 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=26.7
Q ss_pred eEEEEEeC--CeEEEEEEeCCCCCHHHHHHHHHHh
Q 011408 2 LTVSVKWQ--KEVFSNVEIDTSQTPYVFKCQLYDL 34 (486)
Q Consensus 2 ~~~~v~~~--~~~~~~~~~~~~~tv~~lk~~l~~~ 34 (486)
+.|+|.+. +..++ +.++.+.|+.++.+++...
T Consensus 17 i~v~v~~~~~~~~~t-~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 17 IKVSVHFENSQQSFT-FQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp EEEEEEETTCSEEEE-EEEETTS-HHHHHHHHHHH
T ss_pred EEEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHH
Confidence 56788886 68889 9999999999999988776
No 183
>PRK09750 hypothetical protein; Provisional
Probab=32.62 E-value=58 Score=22.45 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=28.5
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhh
Q 011408 415 GIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITK 464 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~ 464 (486)
.+|++.|.|---|. ..-.|.+|.|...+...-+.+++
T Consensus 2 ykY~I~Ati~KpGg-------------~P~~W~r~s~~~mtk~ECeK~~s 38 (64)
T PRK09750 2 YMYKITATIEKEGG-------------TPTNWTRYSKSKLTKSECEKMLS 38 (64)
T ss_pred ceeEEEEEEECCCC-------------CccceeEecCCcCCHHHHHHHhc
Confidence 46999999988885 55679999999888766555543
No 184
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=32.40 E-value=1.2e+02 Score=22.59 Aligned_cols=52 Identities=6% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 21 SQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 21 ~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
..+..+|+.+.++.++++...-+|. --|-.++|+..+.. +.++..+|++...
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L~~g 73 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVLEKG 73 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEECCC
Confidence 4679999999999999987767765 35556666655554 5667777775543
No 185
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=32.18 E-value=79 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=32.5
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
++.|++.-||+.+. +++++..++.++...-..++|...
T Consensus 1 ~~~i~ltvNG~~~~-~~~~p~~~Ll~~LRd~l~ltgtk~ 38 (156)
T COG2080 1 KMPITLTVNGEPVE-LDVDPRTPLLDVLRDELGLTGTKK 38 (156)
T ss_pred CCcEEEEECCeEEE-EEeCCCChHHHHHHHhcCCCCcCC
Confidence 46788899999999 999999999999887777777643
No 186
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=32.02 E-value=1.3e+02 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=22.8
Q ss_pred eEEEEeec---CCCCCCceEEEEEccCCeEEEeeCCCceecC
Q 011408 420 VAVLTHKG---RSADSGHYVAWVKQESGKWIEYDDDNPLPQR 458 (486)
Q Consensus 420 ~aVv~H~G---~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~ 458 (486)
..|.+..| -.+..+||+.||. +.++|..|....
T Consensus 17 ~~v~V~vg~~~Hpm~~~HyI~wI~------l~~~d~~v~~~~ 52 (86)
T cd00524 17 FDVKVKVGSVPHPMTEEHYIEWIE------LYFGDEKVGRVE 52 (86)
T ss_pred CEEEEEECCccCCCCCCcEEEEEE------EEECCeEEEEEE
Confidence 45566666 3578999999998 556665666543
No 187
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=31.76 E-value=1.7e+02 Score=21.89 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHH
Q 011408 149 HMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQ 211 (486)
Q Consensus 149 ~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~ 211 (486)
.++...|-.....|.....+++-..+++.|.+.+|... -=++|.+..-|..|-.
T Consensus 10 iPL~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~---------~Ps~e~l~~~L~~Li~ 63 (80)
T PF10264_consen 10 IPLPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIA---------IPSQEVLYNTLGTLIK 63 (80)
T ss_pred eeHHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC---------CCCHHHHHHHHHHHHH
Confidence 46777888888899999999999999999999988643 3455555555555544
No 188
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=31.71 E-value=1.7e+02 Score=23.51 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCceEEEEEccCCeEEEeeC-CCceecChhhhhhccCCCCCceEEEEEEeec
Q 011408 431 DSGHYVAWVKQESGKWIEYDD-DNPLPQREEDITKLSGGGDWHMAYICMYKAR 482 (486)
Q Consensus 431 ~~GHY~a~vk~~~~~W~~~nD-~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~ 482 (486)
+.|||+-..+..++....+|= .....++.++..+. .++++|+-++.
T Consensus 83 ~~~h~vVi~~~~~~~~~i~dP~~g~~~~~~~~f~~~------w~G~~l~~~~~ 129 (131)
T PF03412_consen 83 KDGHFVVIYKIDDGRVLIYDPKKGKIKLSKEEFEEI------WTGEVLLIKPS 129 (131)
T ss_dssp CCCEEEEEEEECCCEEEECCTTTCEEEEEHHHHHHH------EEEEEEEEEE-
T ss_pred cCcceEEEEeEcCcEEEEEeCCCCeEEEeHHHHHhh------CCCEEEEEEeC
Confidence 558999988866666666653 33445677777664 46888887764
No 189
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=30.99 E-value=2e+02 Score=20.67 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=38.8
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
.++|..+|+..+ ++...|++||.++ .|++++.-=..+.|.++..+ ...+..+++|..+-+
T Consensus 2 ~m~i~~ng~~~e---~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~iev 61 (68)
T COG2104 2 PMTIQLNGKEVE---IAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEV 61 (68)
T ss_pred cEEEEECCEEEE---cCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEE
Confidence 467778888776 5556899998765 47777666666777766532 233444555655544
No 190
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=30.98 E-value=1.9e+02 Score=20.37 Aligned_cols=59 Identities=10% Similarity=0.258 Sum_probs=37.0
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|.-+|+.++ + ....|+.+|.++ .+.++..-.+-..+.++..+ ......+++|..+-++
T Consensus 2 ~i~vNg~~~~-~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii 60 (66)
T PRK08053 2 QILFNDQPMQ-C--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_pred EEEECCeEEE-c--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEE
Confidence 5777999988 4 566788888865 45554444444666665432 2344457777776553
No 191
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=30.89 E-value=43 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.4
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHH
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQL 31 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l 31 (486)
++|+|..+++++. +.+..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~-a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIE-AELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEE-EEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEE-EEECCCHHHHHHHHhC
Confidence 4789999999999 9999999999988877
No 192
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.73 E-value=1.3e+02 Score=29.54 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=34.4
Q ss_pred hhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCC
Q 011408 116 NSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKP 168 (486)
Q Consensus 116 NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 168 (486)
--+.|.|-.+|+|++++-+-.-.................|+.+|..|+.....
T Consensus 147 ~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~ 199 (411)
T KOG2757|consen 147 EEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEEN 199 (411)
T ss_pred HHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchh
Confidence 45789999999999988543211111111113356677899999999887633
No 193
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=30.30 E-value=50 Score=36.75 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=24.0
Q ss_pred EEeecCCCCCCceEEEEEccCCeEEEeeC
Q 011408 423 LTHKGRSADSGHYVAWVKQESGKWIEYDD 451 (486)
Q Consensus 423 v~H~G~~~~~GHY~a~vk~~~~~W~~~nD 451 (486)
++-.|...+||||+..+|..++.+|.||-
T Consensus 53 ltgv~p~~~sghwimlikg~gn~y~lfdp 81 (1439)
T PF12252_consen 53 LTGVSPRQDSGHWIMLIKGQGNQYYLFDP 81 (1439)
T ss_pred ecCcCCCCcCceeEEEEEcCCCceEEecc
Confidence 33346667899999999999999999985
No 194
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.22 E-value=22 Score=35.50 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=50.4
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+.-+..-|..++.+.+++.+||+...-|.+..|+++.-.+|+.+-|++.++..|++.
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 556677789999999999999999988999999999999999999999998877643
No 195
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=30.16 E-value=1.5e+02 Score=23.60 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=27.1
Q ss_pred eEEEEEeCC--eEEEEEEeCCCCCHHHHHHHHHHh
Q 011408 2 LTVSVKWQK--EVFSNVEIDTSQTPYVFKCQLYDL 34 (486)
Q Consensus 2 ~~~~v~~~~--~~~~~~~~~~~~tv~~lk~~l~~~ 34 (486)
+.|.|.+.+ +.++ +.++.++++.++.+++..+
T Consensus 18 i~v~i~~~~~~~~~t-~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 18 ILIVVHLEKDQQTKT-LKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred EEEEEEEccCceeEE-EEECCCCCHHHHHHHHHHH
Confidence 457787754 8899 9999999999999988776
No 196
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=30.12 E-value=69 Score=24.73 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=33.2
Q ss_pred EEEEEEEEeCCCCCeeeecCceEEEEEeccCCcchHHHHHHh--hhh--hhhhhcCcccCCcceEeeeeEeccc
Q 011408 231 IDIVSRVHCQESGEESSETESIYALKCHISHEVNHLHEGLKH--GLK--SELEKASPALGRSAVYLKESCINGL 300 (486)
Q Consensus 231 ~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~~~l~~~l~~--~~~--~~~~~~c~~c~~~~~~~k~~~i~~l 300 (486)
+.......|..|++....... |+-...-..+..++.|.. .++ .+-+..|++||....+-.+..+.+.
T Consensus 16 g~~~~rf~C~tCpY~~~I~~e---i~~r~~~~~Kevd~vlgg~~a~~nv~~t~~~Cp~Cgh~rayF~qlQtRSA 86 (105)
T KOG2906|consen 16 GESCNRFSCRTCPYVFPISRE---ISSRKYPKLKEVDDVLGGDEAWENVDQTEATCPTCGHERAYFMQLQTRSA 86 (105)
T ss_pred CCeEeeEEcCCCCceeeEeee---eeccccCchhhhhhhcCCcccccchhhccCcCCCCCCCceEEEEeeeccC
Confidence 344677889999887322211 111111111223333321 111 2233579999998877666555443
No 197
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=30.06 E-value=2e+02 Score=22.18 Aligned_cols=55 Identities=7% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHhhCCccccc--------------CCCCCCCchHHHHHHHHHH
Q 011408 153 VATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL--------------HNGTFMQQDAEECWTQLLY 207 (486)
Q Consensus 153 ~~l~~l~~~l~~~~~~i~p~~~~~~l~~~~~~f~~~--------------~~~~~~QqDa~Efl~~ll~ 207 (486)
..|..+|..+.+....++-.+|...+.+-.|.|-.. ..+...+=|-+||+..+-.
T Consensus 8 ~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 344455555554445566666666665555554322 1123345666777665543
No 198
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=30.00 E-value=1e+02 Score=23.10 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHhhCC--CCCceEEE
Q 011408 12 VFSNVEIDTSQTPYVFKCQLYDLTGV--PPERQKIM 45 (486)
Q Consensus 12 ~~~~~~~~~~~tv~~lk~~l~~~~~v--p~~~qkl~ 45 (486)
... |.|+..+|+.++-+.+.+.+++ .+..-.|+
T Consensus 18 ~k~-i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKT-IKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEE-EEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEE-EEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 556 9999999999999999999999 34444563
No 199
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=29.87 E-value=1.6e+02 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=27.2
Q ss_pred CCceEEEEEccCCeEEEeeCCC-ceecChhhhhhccCCCCCceEEEEE
Q 011408 432 SGHYVAWVKQESGKWIEYDDDN-PLPQREEDITKLSGGGDWHMAYICM 478 (486)
Q Consensus 432 ~GHY~a~vk~~~~~W~~~nD~~-V~~~~~~~v~~~~~g~~~~~aYlLf 478 (486)
.|||+...+..++.|+.+|-.. ...++.++..+.. +++++|
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~~~------~g~vi~ 124 (125)
T cd02420 83 FNHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQSF------TGVVLT 124 (125)
T ss_pred CCEEEEEEEEeCCEEEEECCCcCceeecHHHHHhhC------CceEEe
Confidence 4899999997677777777433 3346777776643 356554
No 200
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=28.97 E-value=1.1e+02 Score=23.23 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhc-CC-CC-CcchHHHHHHHHhhCCccc
Q 011408 151 LTVATSELFNDLD-KS-VK-PVAPMQFWMLLRKKYPQFG 186 (486)
Q Consensus 151 ~~~~l~~l~~~l~-~~-~~-~i~p~~~~~~l~~~~~~f~ 186 (486)
-+..|...|+.+. .. .. .++..+|...++..+|.|.
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l 44 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL 44 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh
Confidence 3567778888886 23 35 5888888888887656553
No 201
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=28.65 E-value=53 Score=31.82 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=13.7
Q ss_pred EEEEeecCCCCCCceEEEEE
Q 011408 421 AVLTHKGRSADSGHYVAWVK 440 (486)
Q Consensus 421 aVv~H~G~~~~~GHY~a~vk 440 (486)
+-++..| +.++|||+ |.+
T Consensus 263 ~~~vF~G-~~~~GHYt-~~~ 280 (320)
T PF08715_consen 263 CYAVFTG-STDSGHYT-HDV 280 (320)
T ss_dssp ESEEEES-CTTTCEEE-EEE
T ss_pred eEEEEEc-CCCccceE-EEc
Confidence 4445789 68999999 766
No 202
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=28.34 E-value=1.6e+02 Score=21.72 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhhCCCCCceEEE-e-cCCcCCCCccccccCcCCCCeEEEee
Q 011408 21 SQTPYVFKCQLYDLTGVPPERQKIM-V-KGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 21 ~~tv~~lk~~l~~~~~vp~~~qkl~-~-~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
..+..+|+.+.++.+++|...-+|. . -|-.++|+..+.. +.++..+|++.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~L~ 69 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMALE 69 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEEEc
Confidence 4679999999999999998777775 2 4555566655554 45566666644
No 203
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=28.10 E-value=96 Score=24.48 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=17.0
Q ss_pred CCCCCceEEEEEccCCeEEEeeCCCceecC
Q 011408 429 SADSGHYVAWVKQESGKWIEYDDDNPLPQR 458 (486)
Q Consensus 429 ~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~ 458 (486)
-+.-|||+.||. +.++|..|..+.
T Consensus 37 PM~~~HyI~wI~------l~~~~~~v~r~~ 60 (104)
T cd03172 37 PNTTEHHIEWIE------LYFGVYLLGRVE 60 (104)
T ss_pred CCCCCeEEEEEE------EEECCEEEEEEE
Confidence 478899999998 455665555543
No 204
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=28.01 E-value=1.9e+02 Score=21.98 Aligned_cols=55 Identities=18% Similarity=0.045 Sum_probs=39.0
Q ss_pred EEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceE-EE---e---cCCcCCCCccccc
Q 011408 4 VSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQK-IM---V---KGGLLKDDSDWSM 59 (486)
Q Consensus 4 ~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qk-l~---~---~~~~l~d~~~l~~ 59 (486)
|+|.. .|.... |.|+..+|+.+.-+.|.++....++.-= |. . =...++|+..+-+
T Consensus 5 vkv~~~Dg~sK~-l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKS-LEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeE-EEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 33443 578889 9999999999999999999988666543 33 1 1246677654443
No 205
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=27.85 E-value=2.4e+02 Score=22.63 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=33.1
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCCcCCCCcccccc
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGGLLKDDSDWSML 60 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~~l~d~~~l~~~ 60 (486)
+-|+.+.||.+|...|....+++++..=-+ +++.+...+.++.++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 459999999999999999999888865434 444444555566644
No 206
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=27.66 E-value=2.1e+02 Score=19.82 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=37.2
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.|+.+|+..+ +....|+.+|++++..... -++++|=..++|.. +++|..+.++
T Consensus 2 ~I~vN~k~~~---~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~~-----L~e~D~v~~I 54 (57)
T PF14453_consen 2 KIKVNEKEIE---TEENTTLFELRKESKPDAD------IVILNGFPTKEDIE-----LKEGDEVFLI 54 (57)
T ss_pred EEEECCEEEE---cCCCcCHHHHHHhhCCCCC------EEEEcCcccCCccc-----cCCCCEEEEE
Confidence 4677888766 7788899999998865333 34577767777654 5557777664
No 207
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=26.98 E-value=2.4e+02 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.8
Q ss_pred CCCeeEEEeEEEEeecCCCCCCceEEEE
Q 011408 412 HLTGIYDLVAVLTHKGRSADSGHYVAWV 439 (486)
Q Consensus 412 ~~~~~Y~L~aVv~H~G~~~~~GHY~a~v 439 (486)
.+....+|-||-.+.|. .-+||-.-..
T Consensus 80 ~~d~vLsLLai~fe~~e-~p~G~v~L~f 106 (138)
T PF11164_consen 80 DPDAVLSLLAITFEPGE-APAGHVLLTF 106 (138)
T ss_pred CCCceEEEEEEEEEeCC-CCCcEEEEEE
Confidence 34468999999999984 6677765443
No 208
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=26.45 E-value=60 Score=29.43 Aligned_cols=32 Identities=19% Similarity=0.051 Sum_probs=23.4
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCce
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQ 42 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~q 42 (486)
|..|- +-|.+.+|..++|++|++.+|+|....
T Consensus 132 GiPF~-f~v~~gE~f~~tK~Rl~~rlgv~~keF 163 (213)
T PF14533_consen 132 GIPFL-FVVKPGETFSDTKERLQKRLGVSDKEF 163 (213)
T ss_dssp EEEEE-EEEETT--HHHHHHHHHHHH---HHHH
T ss_pred CCCEE-EEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence 56778 889999999999999999999987653
No 209
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=25.63 E-value=1.1e+02 Score=24.65 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=24.9
Q ss_pred EeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChh
Q 011408 419 LVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREE 460 (486)
Q Consensus 419 L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~ 460 (486)
+.|||+.+-. .|.| ++|.|++|||.-.--++.+
T Consensus 58 ~~AViVRtkk--------~~rR-~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 58 VKAVVVRTKK--------EVRR-PDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred EEEEEEEeCC--------ceEc-CCCCEEEeCCceEEEECCC
Confidence 5788887653 1455 9999999999887777654
No 210
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=25.34 E-value=2.4e+02 Score=19.60 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=34.3
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|..+|+.++ +....|+.+|.+++ ++++ .-.+.+.+.+...+ ...+..+++|..+-+
T Consensus 2 ~i~vNg~~~~---~~~~~tl~~ll~~l----~~~~-~~~v~vN~~~v~~~-~~~~~~L~~gD~vei 58 (65)
T PRK06944 2 DIQLNQQTLS---LPDGATVADALAAY----GARP-PFAVAVNGDFVART-QHAARALAAGDRLDL 58 (65)
T ss_pred EEEECCEEEE---CCCCCcHHHHHHhh----CCCC-CeEEEECCEEcCch-hcccccCCCCCEEEE
Confidence 5788999877 45678999888766 3432 22333566555422 133334666776655
No 211
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=25.16 E-value=2e+02 Score=27.86 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=40.9
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|+-||+.++ +....|+.+|.++ ++++++.--+.+++.+++-+ .+.+..+++|..+-+
T Consensus 2 ~I~VNGk~~e---l~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEI 59 (326)
T PRK11840 2 RIRLNGEPRQ---VPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEI 59 (326)
T ss_pred EEEECCEEEe---cCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEE
Confidence 6788999877 5567788877654 58888776666788776533 345556777877655
No 212
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=24.95 E-value=3.7e+02 Score=21.61 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=32.1
Q ss_pred EEEeecCCCCCCceEEEEEccCCeEEEeeCC--CceecChhhhhhccCCCCCceEEEEEEee
Q 011408 422 VLTHKGRSADSGHYVAWVKQESGKWIEYDDD--NPLPQREEDITKLSGGGDWHMAYICMYKA 481 (486)
Q Consensus 422 Vv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~--~V~~~~~~~v~~~~~g~~~~~aYlLfY~r 481 (486)
+|+|.......|||+...+ .++.++.+.|- ....++.++.... .++++++-.+
T Consensus 79 ~I~~~~~~~~~~~~~Vl~~-~~~~~~~i~dp~~~~~~~~~~ef~~~------w~g~~l~~~~ 133 (136)
T cd02418 79 FIAHVIKEWKLNHYVVVYK-IKKKKILIADPAVGITKISKEEFEKE------WTGVALFLEP 133 (136)
T ss_pred EEEEEccCCCCCeEEEEEE-EcCCEEEEECCCCCCEEeeHHHHHhh------CeEEEEEEec
Confidence 4455433346799999988 44556666553 3445677777663 3466666544
No 213
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=23.95 E-value=87 Score=23.29 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=18.1
Q ss_pred EEeCCCCCHHHHHHHHHHhh
Q 011408 16 VEIDTSQTPYVFKCQLYDLT 35 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~ 35 (486)
+.++.++|+.++|+++.+.-
T Consensus 4 l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 4 LRVLREATLSTIKHELFKQA 23 (78)
T ss_pred EEccccccHHHHHHHHHHHH
Confidence 88999999999999998763
No 214
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=23.79 E-value=11 Score=34.40 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=38.9
Q ss_pred eEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhh-hhccCCCCCceEEEEEEeeccCC
Q 011408 420 VAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDI-TKLSGGGDWHMAYICMYKARSIS 485 (486)
Q Consensus 420 ~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v-~~~~~g~~~~~aYlLfY~r~~~~ 485 (486)
.|+|||.-. |+++..| -++.||.+|--.--+--..+. +++.-..-...+|-+|-++-++|
T Consensus 104 rafICnl~e-----HWF~iRK-fg~qWfnlnSllagPellSdtyls~FL~qlq~egySIFVVkG~lP 164 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRK-FGKQWFNLNSLLAGPELLSDTYLSAFLAQLQQEGYSIFVVKGDLP 164 (315)
T ss_pred hhhhhcchh-----hhhhHhh-hcchhccchhhhcchHHHHHHHHHHHHHHHHhCCeeEEEEecCCC
Confidence 788999987 9999988 999999998644333211110 10000000146899999888887
No 215
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=23.69 E-value=1.9e+02 Score=21.33 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=33.6
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
+|+... +.|-+.+|+.|+.+.++..-+..|...-|-.|
T Consensus 8 n~~~~~-v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 8 DNQPVL-TYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred CCceEE-EEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 677788 99999999999999999999999998776543
No 216
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.37 E-value=92 Score=25.36 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEeEEEEeecCCCCCCceEEEEE
Q 011408 417 YDLVAVLTHKGRSADSGHYVAWVK 440 (486)
Q Consensus 417 Y~L~aVv~H~G~~~~~GHY~a~vk 440 (486)
=+.+|+|+-......+-||+|||-
T Consensus 83 ~dhFgFIcrEs~~~~~~~f~CyVF 106 (129)
T cd01269 83 VDHFGFICRESPEPGLSQYICYVF 106 (129)
T ss_pred cceEEEEeccCCCCCcceEEEEEE
Confidence 457999998886555569999998
No 217
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=23.37 E-value=1.7e+02 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=35.8
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEE
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKI 44 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl 44 (486)
.+.|.- +|.+.. |++..+++..++-+.++.+.|.|.+.+.-
T Consensus 3 ~L~V~Lpdg~~i~-V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVT-VRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEE-EEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 455554 789999 99999999999999999999999998864
No 218
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=22.89 E-value=1.8e+02 Score=24.94 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=31.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
..|. +.|++.+|=.++|+.+..+|||.+..-+.+
T Consensus 23 N~yt-F~V~~~anK~eIK~AVE~iF~VkV~~VNT~ 56 (158)
T PRK12280 23 NVYT-FKVDRRANKIEIKKAVEFIFKVKVLKVNIF 56 (158)
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 6799 999999999999999999999999998766
No 219
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=22.85 E-value=2.6e+02 Score=22.15 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=24.7
Q ss_pred CceEEEEEccCCeEEEee-CCCceecChhhhhhccCCCCCceEEEEEE
Q 011408 433 GHYVAWVKQESGKWIEYD-DDNPLPQREEDITKLSGGGDWHMAYICMY 479 (486)
Q Consensus 433 GHY~a~vk~~~~~W~~~n-D~~V~~~~~~~v~~~~~g~~~~~aYlLfY 479 (486)
|||+...+..++.++.+| +.....++.++.... .++|+++|
T Consensus 85 ~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~l~~~------~~g~~~~~ 126 (126)
T cd02425 85 NHFVVLEKIKKNKVTIVDPAIGRIKISIDEFLEN------FSGYILTF 126 (126)
T ss_pred CcEEEEEEEECCEEEEEcCCCCCEEECHHHHHhh------CCcEEEeC
Confidence 899999985555544443 222335677777653 34666654
No 220
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=22.76 E-value=3.2e+02 Score=20.08 Aligned_cols=39 Identities=10% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
+|+.-. |.+-+..|+.|....++++-|++++.-.+..-|
T Consensus 8 dg~~T~-V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 8 DGSTTV-VPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred CCCeEE-EEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 677777 999999999999999999999999998887544
No 221
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.62 E-value=91 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.1
Q ss_pred EEeCCCCCHHHHHHHHHHhh
Q 011408 16 VEIDTSQTPYVFKCQLYDLT 35 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~ 35 (486)
+.++.++|+.++|+.|.+.-
T Consensus 4 l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 4 LRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEETT-BHHHHHHHHHHHG
T ss_pred EEccCcCcHHHHHHHHHHHH
Confidence 88999999999999998764
No 222
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.54 E-value=1.3e+02 Score=17.31 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCC-CCcchHHHHHHHH
Q 011408 155 TSELFNDLDKSV-KPVAPMQFWMLLR 179 (486)
Q Consensus 155 l~~l~~~l~~~~-~~i~p~~~~~~l~ 179 (486)
|+.+|..+...+ ..|+..+|...++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 677888887766 7899999888876
No 223
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=22.44 E-value=1.5e+02 Score=25.16 Aligned_cols=34 Identities=9% Similarity=-0.003 Sum_probs=28.0
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCC
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVP 38 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp 38 (486)
|++..||+.++ +++++..++.++...-..++|+.
T Consensus 2 i~~~vNG~~~~-~~~~~~~~Ll~~LR~~lgltg~K 35 (148)
T TIGR03193 2 LRLTVNGRWRE-DAVADNMLLVDYLRDTVGLTGTK 35 (148)
T ss_pred EEEEECCEEEE-eecCCCCcHHHHHHHhcCCCCCC
Confidence 56788999999 99999999999887655666663
No 224
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=22.36 E-value=1.6e+02 Score=17.01 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCC-CCcchHHHHHHHHh
Q 011408 155 TSELFNDLDKSV-KPVAPMQFWMLLRK 180 (486)
Q Consensus 155 l~~l~~~l~~~~-~~i~p~~~~~~l~~ 180 (486)
++.+|+.+...+ ..|+..+|...+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777666 77888888777653
No 225
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=22.17 E-value=82 Score=21.84 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=24.9
Q ss_pred EEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhh
Q 011408 417 YDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDIT 463 (486)
Q Consensus 417 Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~ 463 (486)
|.+.|.|.--|. .--.|.+|.|...+...-+.+.
T Consensus 1 YkItAtI~KpG~-------------~Pv~W~rys~~kmT~~eCek~f 34 (61)
T PF06688_consen 1 YKITATIIKPGN-------------TPVNWTRYSDSKMTKAECEKMF 34 (61)
T ss_pred CceEEEEEcCCC-------------CCeeeEEecCCccCHHHHHHhc
Confidence 566677766664 5568999999999887665554
No 226
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=21.85 E-value=1.3e+02 Score=20.20 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.4
Q ss_pred eEEEEEeCCeEEEEEEeCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTS 21 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~ 21 (486)
+++.|.|+|..+. |.|+.+
T Consensus 10 l~F~~~~rg~~l~-v~i~~~ 28 (54)
T PF03633_consen 10 LSFRLRYRGHWLE-VEITHE 28 (54)
T ss_dssp EEEEEEETTEEEE-EEEETT
T ss_pred eEEEEEECCEEEE-EEEECC
Confidence 4688899999998 888654
No 227
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=21.74 E-value=2e+02 Score=19.78 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCC-CCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHH
Q 011408 155 TSELFNDLDKSV-KPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQ 211 (486)
Q Consensus 155 l~~l~~~l~~~~-~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~ 211 (486)
|+.+|..+.... ..++..+|...+....... .++.+.+.+..++..+..
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--------~~~~~~~~~~~~~~~~D~ 51 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM--------SDEESDEMIDQIFREFDT 51 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--------THHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--------cHHHHHHHHHHHHHHhCC
Confidence 678899988776 8999999999998764322 256666666666666553
No 228
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=21.40 E-value=2.3e+02 Score=28.07 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=46.6
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhh-CCCCCceEEE--ecCCcC-CCCccccccCcCCC
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLT-GVPPERQKIM--VKGGLL-KDDSDWSMLGVKQG 65 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~-~vp~~~qkl~--~~~~~l-~d~~~l~~~~i~~~ 65 (486)
.|.|+. +|+... ..++-.-||.|++.-|..-- +-+...+-|+ +-.+.| +|+.||.+.++.+.
T Consensus 307 sIQIRLanG~RlV-~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 307 SIQIRLANGTRLV-LKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred eEEEEecCCceee-eeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 578887 688888 89999999999999998854 4444556676 444555 45589999988774
No 229
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=21.08 E-value=25 Score=32.34 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=46.4
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCC
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQ 64 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~ 64 (486)
.+...|.|..+- ++|+..+++.|.+..+.++.+|.+..-|+++.+ .+++..-+..+-.++
T Consensus 5 ~~~~~~~gn~i~-ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~-llk~iahl~~p~mkE 64 (278)
T KOG4842|consen 5 KTEGIKSGNAIY-LSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALN-LLKEIAHLVSPLMKE 64 (278)
T ss_pred EEEEEecCcEEE-EEeccccccCCCCcccceeeeeccchHHHHhhh-hhhhhhhhhhhhhcc
Confidence 344457899999 999999999999999999999999998888754 556555554443333
No 230
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=20.77 E-value=2.1e+02 Score=22.62 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 4 VSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 4 ~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
|.|.. +|++.. |.|..=-+..+++.++..+||++.
T Consensus 3 i~~I~~dG~tk~-VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKT-VNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEE-EE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEE-EEECCCCCHHHHHHHHHHHcCCcc
Confidence 34444 789999 999999999999999999999988
No 231
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=20.35 E-value=1.3e+02 Score=28.12 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
..|+ +.++..+|..+|-+.+.+.+|+.|+.-|++
T Consensus 190 ~~F~-l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 190 PEFT-LWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp --EE-EEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCEE-EEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 5899 999999999999999999999999999998
No 232
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=20.08 E-value=90 Score=22.21 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred hcCcccCCcceEeeeeEe--cccCCceEEEEEEEEE
Q 011408 280 KASPALGRSAVYLKESCI--NGLPRYLTIQFVRFFW 313 (486)
Q Consensus 280 ~~c~~c~~~~~~~k~~~i--~~lP~~L~i~l~Rf~~ 313 (486)
+.|++|+........... ..+-.++-|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 469999986544333332 2345567788888863
Done!