Query 011408
Match_columns 486
No_of_seqs 303 out of 1985
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 07:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayn_A Ubiquitin carboxyl-term 100.0 1.4E-71 4.9E-76 561.0 27.6 377 90-485 1-396 (404)
2 1vjv_A Ubiquitin carboxyl-term 100.0 1.9E-69 6.5E-74 546.6 30.0 376 97-484 18-415 (415)
3 2y6e_A Ubiquitin carboxyl-term 100.0 3.5E-64 1.2E-68 500.1 28.8 302 100-484 5-360 (367)
4 3nhe_A Ubiquitin carboxyl-term 100.0 1.9E-63 6.5E-68 492.0 27.0 303 99-485 5-345 (348)
5 1nb8_A Ubiquitin carboxyl-term 100.0 1.2E-62 4.1E-67 485.3 28.4 299 100-483 3-315 (353)
6 2gfo_A Ubiquitin carboxyl-term 100.0 4.9E-63 1.7E-67 495.1 24.9 300 101-483 60-396 (396)
7 3i3t_A Ubiquitin carboxyl-term 100.0 3E-62 1E-66 484.8 24.1 298 102-485 2-353 (355)
8 2f1z_A Ubiquitin carboxyl-term 100.0 3.5E-59 1.2E-63 483.7 27.5 299 100-483 172-484 (522)
9 3mhs_A Ubiquitin carboxyl-term 100.0 5.1E-59 1.8E-63 478.4 25.7 311 100-485 138-476 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 1.8E-58 6E-63 497.2 20.8 232 101-344 342-627 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 5.5E-44 1.9E-48 337.4 6.0 287 100-451 6-308 (374)
12 1wgg_A Ubiquitin carboxyl-term 99.7 2.2E-17 7.5E-22 128.9 8.7 82 1-84 7-89 (96)
13 1v5t_A 8430435I17RIK protein; 99.7 1.6E-16 5.6E-21 122.6 7.4 76 1-77 7-86 (90)
14 3shq_A UBLCP1; phosphatase, hy 99.7 1.9E-16 6.4E-21 150.8 9.0 93 1-94 5-104 (320)
15 1v86_A DNA segment, CHR 7, way 99.6 3.2E-15 1.1E-19 116.5 7.8 74 1-76 17-90 (95)
16 2lxa_A Ubiquitin-like protein 99.6 2.4E-15 8.4E-20 114.2 5.7 74 1-75 1-79 (87)
17 2dzm_A FAS-associated factor 1 99.5 1.6E-14 5.4E-19 112.3 8.3 73 1-74 9-82 (100)
18 3plu_A Ubiquitin-like modifier 99.5 2.7E-14 9.1E-19 107.7 8.1 69 1-70 21-90 (93)
19 3m62_B UV excision repair prot 99.5 1.8E-14 6E-19 114.7 7.4 75 1-76 1-76 (106)
20 1wxv_A BAG-family molecular ch 99.5 2.9E-14 9.8E-19 110.8 8.4 74 1-75 7-86 (92)
21 2kd0_A LRR repeats and ubiquit 99.5 5.9E-14 2E-18 106.9 9.7 72 2-74 13-84 (85)
22 2bwf_A Ubiquitin-like protein 99.5 2.1E-13 7.3E-18 102.2 9.9 72 2-74 5-76 (77)
23 1wju_A NEDD8 ultimate buster-1 99.5 9.7E-14 3.3E-18 107.1 7.4 74 2-76 16-94 (100)
24 4a20_A Ubiquitin-like protein 99.5 1.3E-13 4.6E-18 107.0 8.1 73 1-74 19-96 (98)
25 1uh6_A Ubiquitin-like 5; beta- 99.4 9.2E-14 3.1E-18 107.2 6.2 70 1-71 28-98 (100)
26 3m63_B Ubiquitin domain-contai 99.4 5.9E-14 2E-18 110.5 5.3 72 2-74 29-100 (101)
27 3phx_B Ubiquitin-like protein 99.4 4.9E-13 1.7E-17 100.7 9.4 70 2-72 5-75 (79)
28 1uel_A HHR23B, UV excision rep 99.4 7.8E-13 2.7E-17 103.1 10.6 73 2-75 1-77 (95)
29 2kk8_A Uncharacterized protein 99.4 3.6E-13 1.2E-17 102.1 8.4 71 2-73 11-83 (84)
30 4fbj_B NEDD8; effector-HOST ta 99.4 4.4E-13 1.5E-17 102.9 8.5 71 2-73 1-72 (88)
31 2wyq_A HHR23A, UV excision rep 99.4 9E-13 3.1E-17 100.8 9.7 73 1-74 5-81 (85)
32 4eew_A Large proline-rich prot 99.4 4.5E-13 1.5E-17 103.1 8.0 68 2-71 18-86 (88)
33 2daf_A FLJ35834 protein; hypot 99.4 5.9E-13 2E-17 104.3 8.7 73 2-75 16-90 (118)
34 3v6c_B Ubiquitin; structural g 99.4 6.7E-13 2.3E-17 102.7 9.0 71 1-72 17-88 (91)
35 4dwf_A HLA-B-associated transc 99.4 6.9E-13 2.4E-17 102.6 8.4 72 1-74 5-77 (90)
36 2kan_A Uncharacterized protein 99.4 7.6E-13 2.6E-17 102.7 8.3 73 1-74 15-88 (94)
37 1ttn_A DC-UBP, dendritic cell- 99.4 9.3E-13 3.2E-17 104.8 8.9 74 1-75 23-97 (106)
38 2klc_A Ubiquilin-1; ubiquitin- 99.4 1.4E-12 5E-17 102.6 9.6 73 1-74 25-97 (101)
39 2hj8_A Interferon-induced 17 k 99.4 8.4E-13 2.9E-17 101.4 7.8 72 2-74 5-77 (88)
40 4hcn_B Polyubiquitin, ubiquiti 99.4 1E-12 3.6E-17 103.0 8.3 71 1-72 22-93 (98)
41 1v5o_A 1700011N24RIK protein; 99.4 1.2E-12 3.9E-17 103.5 8.3 73 1-74 7-85 (102)
42 2l7r_A Ubiquitin-like protein 99.4 8.4E-13 2.9E-17 102.4 7.3 70 1-72 19-88 (93)
43 1j8c_A Ubiquitin-like protein 99.4 1.8E-12 6.1E-17 106.0 9.5 73 1-74 32-104 (125)
44 2dzi_A Ubiquitin-like protein 99.4 1.8E-12 6.2E-17 98.1 8.9 72 1-73 7-79 (81)
45 3dbh_I NEDD8; cell cycle, acti 99.4 2.1E-12 7.2E-17 99.4 8.8 71 1-72 12-83 (88)
46 1wgd_A Homocysteine-responsive 99.4 1.3E-12 4.6E-17 101.4 7.4 72 1-73 7-85 (93)
47 3mtn_B UBA80, ubcep1, ubiquiti 99.4 2.9E-12 1E-16 97.9 9.2 71 1-72 3-74 (85)
48 1wx8_A Riken cDNA 4931431F19; 99.3 1.1E-12 3.8E-17 102.6 6.7 73 1-74 17-89 (96)
49 1yqb_A Ubiquilin 3; structural 99.3 2E-12 6.9E-17 101.5 8.0 73 1-74 22-94 (100)
50 1ndd_A NEDD8, protein (ubiquit 99.3 3.4E-12 1.2E-16 95.3 8.9 70 2-72 1-71 (76)
51 3n3k_B Ubiquitin; hydrolase, p 99.3 2.3E-12 7.9E-17 98.5 7.9 72 1-73 3-75 (85)
52 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 3.3E-12 1.1E-16 98.0 8.8 72 1-73 7-79 (87)
53 1wx7_A Ubiquilin 3; ubiquitin- 99.3 2.9E-12 1E-16 102.0 8.7 73 1-74 17-89 (106)
54 2faz_A Ubiquitin-like containi 99.3 4.2E-12 1.4E-16 95.2 8.9 71 1-72 2-75 (78)
55 3vdz_A Ubiquitin-40S ribosomal 99.3 4.9E-12 1.7E-16 101.4 9.3 71 1-72 35-106 (111)
56 1yx5_B Ubiquitin; proteasome, 99.3 6.8E-12 2.3E-16 98.5 9.6 72 2-74 1-73 (98)
57 1wy8_A NP95-like ring finger p 99.3 6E-12 2.1E-16 97.0 9.0 72 1-73 7-81 (89)
58 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 5.7E-12 1.9E-16 98.7 8.9 71 2-73 2-73 (96)
59 3a9j_A Ubiquitin; protein comp 99.3 6.8E-12 2.3E-16 93.6 8.9 70 2-72 1-71 (76)
60 1sif_A Ubiquitin; hydrophobic 99.3 7.8E-12 2.7E-16 95.9 8.9 70 3-73 11-81 (88)
61 2fnj_B Transcription elongatio 99.3 8.9E-12 3.1E-16 98.9 7.6 71 2-73 3-80 (118)
62 2ojr_A Ubiquitin; lanthide-bin 99.3 2.5E-11 8.5E-16 97.4 9.7 71 1-72 35-106 (111)
63 1we6_A Splicing factor, putati 99.2 1.8E-11 6.2E-16 98.3 8.7 71 1-72 27-102 (111)
64 4ajy_B Transcription elongatio 99.2 2.6E-11 9.1E-16 95.7 9.3 71 3-74 4-81 (118)
65 1v6e_A Cytoskeleton-associated 99.2 2.4E-11 8.1E-16 94.6 8.8 73 1-74 7-88 (95)
66 4b6w_A Tubulin-specific chaper 99.2 2.1E-11 7.2E-16 92.3 8.2 73 1-74 2-84 (86)
67 1x1m_A Ubiquitin-like protein 99.2 1.4E-11 4.9E-16 98.1 7.6 72 2-74 13-100 (107)
68 2kdb_A Homocysteine-responsive 99.2 1E-11 3.5E-16 96.7 6.5 69 2-71 24-99 (99)
69 3rt3_B Ubiquitin-like protein 99.2 2.5E-11 8.6E-16 104.5 9.6 71 2-73 3-76 (159)
70 2kdi_A Ubiquitin, vacuolar pro 99.2 3.3E-11 1.1E-15 96.9 9.0 72 2-74 10-82 (114)
71 3u30_A Ubiquitin, linear DI-ub 99.2 3.4E-11 1.2E-15 105.0 9.6 72 1-73 20-92 (172)
72 2kjr_A CG11242; UBL, ubiquitin 99.2 2.8E-11 9.7E-16 93.4 7.5 71 1-72 15-94 (95)
73 3b1l_X E3 ubiquitin-protein li 98.8 1.3E-12 4.6E-17 97.5 0.0 70 2-72 1-71 (76)
74 2uyz_B Small ubiquitin-related 99.2 3.4E-11 1.2E-15 90.5 7.5 70 2-72 4-74 (79)
75 1we7_A SF3A1 protein; structur 99.2 6E-11 2.1E-15 95.8 8.5 70 2-72 26-106 (115)
76 1wia_A Hypothetical ubiquitin- 99.2 9.1E-11 3.1E-15 91.4 9.0 70 1-74 7-78 (95)
77 1wyw_B Ubiquitin-like protein 99.2 5.1E-11 1.8E-15 93.0 7.5 70 2-72 22-92 (97)
78 2kj6_A Tubulin folding cofacto 99.2 8.4E-11 2.9E-15 91.0 8.5 73 1-74 14-96 (97)
79 3q3f_A Ribonuclease/ubiquitin 99.2 6.6E-11 2.3E-15 103.1 8.6 71 2-73 106-177 (189)
80 3l0w_B Monoubiquitinated proli 99.2 9.2E-11 3.1E-15 101.2 9.4 71 2-73 1-72 (169)
81 1v2y_A 3300001G02RIK protein; 99.1 2E-11 7E-16 95.5 4.0 73 1-74 7-96 (105)
82 1t0y_A Tubulin folding cofacto 99.1 1.2E-10 4.1E-15 94.9 8.2 73 1-74 6-87 (122)
83 1wgh_A Ubiquitin-like 3, HCG-1 99.1 2.6E-10 8.8E-15 90.9 9.9 70 1-71 16-96 (116)
84 2dzj_A Synaptic glycoprotein S 99.1 1.2E-10 4.1E-15 88.7 7.0 69 1-70 10-85 (88)
85 2gow_A HCG-1 protein, ubiquiti 99.1 1.3E-10 4.5E-15 94.0 7.6 71 1-72 17-98 (125)
86 4dbg_A Ranbp-type and C3HC4-ty 99.1 3.2E-10 1.1E-14 88.2 9.3 68 3-71 26-97 (105)
87 3rt3_B Ubiquitin-like protein 99.1 2.2E-10 7.6E-15 98.5 9.3 71 2-73 82-153 (159)
88 3u5e_m 60S ribosomal protein L 99.1 8.9E-12 3E-16 102.7 0.0 71 2-73 1-72 (128)
89 3b08_A Polyubiquitin-C, ubiqui 99.1 4.1E-10 1.4E-14 96.1 8.9 72 2-74 1-73 (152)
90 3u5c_f 40S ribosomal protein S 99.0 1.8E-11 6.3E-16 103.0 0.0 71 2-73 1-72 (152)
91 3ai5_A Yeast enhanced green fl 99.0 6.3E-10 2.1E-14 104.1 9.2 71 1-72 233-304 (307)
92 1oqy_A HHR23A, UV excision rep 99.0 4.7E-10 1.6E-14 108.2 8.6 73 1-74 7-83 (368)
93 1se9_A Ubiquitin family; ubiqu 99.0 1.1E-09 3.8E-14 88.0 8.2 64 2-66 17-89 (126)
94 3b08_A Polyubiquitin-C, ubiqui 99.0 1.4E-09 4.8E-14 92.8 9.3 71 2-73 77-148 (152)
95 3u30_A Ubiquitin, linear DI-ub 99.0 1.1E-09 3.8E-14 95.4 8.6 70 2-72 97-167 (172)
96 2kzr_A Ubiquitin thioesterase 99.0 1.3E-09 4.5E-14 82.9 7.9 72 2-74 1-78 (86)
97 1wf9_A NPL4 family protein; be 98.9 4.7E-09 1.6E-13 83.3 8.7 72 2-74 8-95 (107)
98 1wjn_A Tubulin-folding protein 98.7 6E-08 2E-12 75.5 8.4 72 1-73 9-92 (97)
99 2xzm_9 RPS31E; ribosome, trans 98.6 4.5E-09 1.5E-13 90.7 0.0 64 2-71 1-65 (189)
100 2io1_B Small ubiquitin-related 98.4 8.1E-07 2.8E-11 68.2 8.6 71 2-73 8-79 (94)
101 1wm3_A Ubiquitin-like protein 98.4 1.3E-06 4.4E-11 63.6 9.0 69 2-71 2-71 (72)
102 3a4r_A Nfatc2-interacting prot 98.4 1.5E-06 5.2E-11 64.4 8.5 70 2-72 8-79 (79)
103 2io0_B Small ubiquitin-related 98.3 2.7E-06 9.1E-11 64.7 8.7 71 2-73 6-77 (91)
104 1wz0_A Ubiquitin-like protein 98.2 6.5E-06 2.2E-10 64.2 8.7 70 2-72 25-95 (104)
105 2d07_B Ubiquitin-like protein 98.2 7.1E-06 2.4E-10 62.8 8.4 70 2-72 18-88 (93)
106 2eke_C Ubiquitin-like protein 98.2 6.2E-06 2.1E-10 64.3 8.2 70 2-72 32-101 (106)
107 2k8h_A Small ubiquitin protein 98.1 7.4E-06 2.5E-10 64.4 7.0 71 2-73 27-98 (110)
108 2pjh_A Protein NPL4, nuclear p 97.8 3.4E-05 1.2E-09 57.1 5.4 68 2-70 5-77 (80)
109 4efo_A Serine/threonine-protei 97.7 0.00012 4.3E-09 55.1 7.4 42 9-51 22-63 (94)
110 3kyd_D Small ubiquitin-related 97.6 0.00029 1E-08 55.4 9.0 70 2-72 41-111 (115)
111 3pge_A SUMO-modified prolifera 97.6 0.00023 8E-09 62.0 8.6 71 2-73 30-100 (200)
112 3tix_A Ubiquitin-like protein 97.5 0.00028 9.4E-09 60.1 7.4 69 2-71 58-126 (207)
113 3mp2_A Non-structural protein 97.2 0.0046 1.6E-07 53.8 12.2 35 420-458 161-195 (211)
114 4a3p_A Ubiquitin carboxyl-term 97.2 0.0014 4.9E-08 58.5 9.4 78 3-82 129-216 (217)
115 3jyu_A Ubiquitin carboxyl-term 97.1 0.0025 8.6E-08 57.5 10.5 80 3-84 141-230 (231)
116 2bps_A YUKD protein; ubiquitin 96.8 0.0029 9.8E-08 46.3 5.9 68 2-70 5-80 (81)
117 2l76_A Nfatc2-interacting prot 96.5 0.015 5.3E-07 43.5 8.3 70 2-72 22-91 (95)
118 2al3_A TUG long isoform; TUG U 96.4 0.0074 2.5E-07 44.7 6.2 71 3-74 11-82 (90)
119 3goe_A DNA repair protein RAD6 96.3 0.036 1.2E-06 39.5 8.7 68 2-70 10-79 (82)
120 3v7o_A Minor nucleoprotein VP3 96.3 0.00071 2.4E-08 58.4 0.0 68 2-70 22-89 (227)
121 2jxx_A Nfatc2-interacting prot 96.2 0.019 6.6E-07 43.6 7.9 70 2-72 26-97 (97)
122 2fe8_A PP1AB, ORF1AB, replicas 96.0 0.16 5.4E-06 47.2 14.3 37 420-459 260-296 (315)
123 2kc2_A Talin-1, F1; FERM, adhe 95.7 0.011 3.8E-07 47.3 4.7 37 3-40 13-50 (128)
124 3uf8_A Ubiquitin-like protein 95.4 0.044 1.5E-06 48.5 8.0 71 2-73 22-92 (209)
125 3ix6_A TS, tsase, thymidylate 95.0 0.0041 1.4E-07 59.0 0.0 70 2-72 22-91 (360)
126 3qx1_A FAS-associated factor 1 94.0 0.22 7.7E-06 36.7 7.6 67 2-70 8-80 (84)
127 4da1_A Protein phosphatase 1K, 93.2 0.016 5.6E-07 56.7 0.0 71 2-73 31-101 (389)
128 2dzk_A UBX domain-containing p 92.0 0.94 3.2E-05 35.2 8.7 69 2-71 14-88 (109)
129 1oey_A P67-PHOX, neutrophil cy 91.7 0.46 1.6E-05 34.6 6.1 45 2-48 6-50 (83)
130 2kvr_A Ubiquitin carboxyl-term 91.2 0.18 6.1E-06 40.6 3.9 31 16-46 60-90 (130)
131 1wj4_A KIAA0794 protein; UBX d 90.3 1.1 3.6E-05 35.7 7.7 68 2-71 44-117 (124)
132 1vd2_A Protein kinase C, IOTA 88.7 1.2 4.1E-05 33.0 6.3 46 1-47 6-52 (89)
133 2daj_A KIAA0977 protein, COBL- 88.6 1.8 6.1E-05 31.3 6.8 62 2-64 11-76 (91)
134 1ip9_A BEM1 protein; ubiquitin 86.9 1.2 4E-05 32.4 5.1 42 2-46 13-54 (85)
135 1qmy_A Protease, leader protea 86.7 0.31 1.1E-05 38.8 2.2 35 420-459 110-144 (167)
136 3ivf_A Talin-1; FERM domain, c 84.1 3 0.0001 40.1 8.4 68 2-70 4-81 (371)
137 2cr5_A Reproduction 8; UBX dom 83.6 6.8 0.00023 30.2 8.7 68 2-71 24-96 (109)
138 1s3s_G P47 protein; AAA ATPase 76.7 4.9 0.00017 32.0 5.9 65 2-67 53-122 (127)
139 1q1o_A Cell division control p 75.8 4.5 0.00015 30.4 5.0 36 2-38 6-49 (98)
140 1tyg_B YJBS; alpha beta barrel 73.2 6.6 0.00023 28.9 5.3 61 3-71 20-81 (87)
141 2ylm_A Ubiquitin carboxyl-term 72.9 2.2 7.4E-05 43.3 3.5 30 16-45 40-69 (530)
142 2l32_A Small archaeal modifier 70.7 15 0.00053 25.9 6.6 49 2-55 1-50 (74)
143 1ryj_A Unknown; beta/alpha pro 69.2 25 0.00087 24.3 8.8 58 4-71 5-64 (70)
144 2cu1_A Mitogen-activated prote 64.2 13 0.00044 27.8 5.1 37 3-40 10-46 (103)
145 4eut_A Serine/threonine-protei 61.1 18 0.00062 34.7 7.4 40 8-48 319-358 (396)
146 2bkf_A Zinc-finger protein NBR 60.9 26 0.00089 25.5 6.2 37 2-39 7-45 (87)
147 1wj6_A KIAA0049 protein, RSGI 58.0 48 0.0016 24.8 7.3 38 2-40 15-54 (101)
148 2eel_A Cell death activator CI 56.6 26 0.00089 25.8 5.6 58 22-81 28-88 (91)
149 2cu3_A Unknown function protei 56.0 19 0.00066 24.4 4.7 57 6-71 2-58 (64)
150 2juo_A GA-binding protein alph 52.8 38 0.0013 24.4 5.7 54 16-69 7-60 (89)
151 3o65_A Putative ataxin-3-like 52.3 12 0.00042 31.8 3.8 57 419-485 110-171 (191)
152 1f0z_A THis protein; ubiquitin 49.9 18 0.0006 24.7 3.8 59 5-71 2-60 (66)
153 3r8s_T 50S ribosomal protein L 49.4 37 0.0013 25.1 5.6 39 11-50 28-67 (93)
154 1ffv_A CUTS, iron-sulfur prote 48.9 16 0.00056 30.3 4.0 35 2-37 4-38 (163)
155 2jrh_A Mitogen-activated prote 47.1 57 0.002 23.7 5.9 38 2-40 5-42 (94)
156 2kl0_A Putative thiamin biosyn 46.8 21 0.00071 25.1 3.7 58 5-71 2-59 (73)
157 1n62_A Carbon monoxide dehydro 45.6 21 0.00071 29.8 4.2 35 2-37 4-38 (166)
158 2k5p_A THis protein, thiamine- 44.4 32 0.0011 24.4 4.5 60 5-70 2-62 (78)
159 2c60_A Human mitogen-activated 44.1 65 0.0022 24.0 6.0 38 3-41 33-70 (111)
160 3qa8_A MGC80376 protein; kinas 41.5 18 0.00062 37.7 3.9 44 9-53 320-363 (676)
161 1wgr_A Growth factor receptor- 41.4 44 0.0015 25.1 4.9 55 4-59 12-74 (100)
162 2npt_B Mitogen-activated prote 41.2 85 0.0029 23.1 6.2 39 2-41 21-59 (100)
163 2ww6_A Fibritin, T4 fibritin; 40.9 14 0.0005 20.0 1.6 14 437-451 12-25 (27)
164 3hrd_D Nicotinate dehydrogenas 40.0 23 0.00079 29.3 3.5 28 2-30 4-31 (160)
165 1ef1_A Moesin; membrane, FERM 39.8 47 0.0016 30.3 6.2 40 1-41 1-40 (294)
166 3tve_T 50S ribosomal protein L 39.7 52 0.0018 24.3 5.1 38 11-49 22-60 (92)
167 1rm6_C 4-hydroxybenzoyl-COA re 39.1 25 0.00085 29.1 3.7 34 3-37 4-37 (161)
168 2ylm_A Ubiquitin carboxyl-term 38.8 74 0.0025 32.0 7.8 57 3-60 339-408 (530)
169 2qjl_A URM1, ubiquitin-related 38.7 59 0.002 24.1 5.5 34 1-35 1-45 (99)
170 2zjr_Q 50S ribosomal protein L 38.5 49 0.0017 24.6 4.8 36 13-49 25-61 (95)
171 2hj1_A Hypothetical protein; s 38.1 55 0.0019 24.4 5.1 64 1-70 12-82 (97)
172 1vq8_S 50S ribosomal protein L 37.9 48 0.0016 24.1 4.6 36 10-46 22-57 (85)
173 1wgk_A Riken cDNA 2900073H19 p 37.6 36 0.0012 26.3 4.1 41 2-45 12-64 (114)
174 2jvf_A De novo protein M7; tet 36.3 49 0.0017 22.7 4.1 31 2-34 8-38 (96)
175 1qmy_A Protease, leader protea 36.2 37 0.0013 27.1 3.9 32 102-133 12-44 (167)
176 1j0g_A Hypothetical protein 18 35.3 1.2E+02 0.004 21.5 7.3 62 10-71 22-84 (92)
177 3qij_A Protein 4.1; cytoskelet 34.9 46 0.0016 30.5 5.2 39 2-41 18-57 (296)
178 1t3q_A Quinoline 2-oxidoreduct 33.5 43 0.0015 27.9 4.3 29 2-31 10-38 (168)
179 3j21_T 50S ribosomal protein L 30.3 72 0.0025 23.2 4.4 35 11-46 24-58 (86)
180 1f2r_I Inhibitor of caspase-ac 27.9 1.8E+02 0.0061 21.7 6.3 52 21-74 36-91 (100)
181 1wmh_B Partitioning defective- 26.8 1.8E+02 0.0062 21.0 6.3 45 2-47 7-53 (86)
182 2lv7_A Calcium-binding protein 26.4 1.7E+02 0.0058 21.4 6.3 33 150-182 33-66 (100)
183 3kz5_E Protein SOPB; partition 25.0 84 0.0029 20.1 3.4 31 4-35 14-44 (52)
184 1c8c_A DNA-binding protein 7A; 24.9 45 0.0015 21.4 2.2 18 1-19 1-18 (64)
185 3k8u_A Putative ABC transporte 24.8 1E+02 0.0035 24.8 5.2 55 422-482 84-141 (156)
186 3onh_A Ubiquitin-activating en 23.9 2.3E+02 0.0079 22.2 6.5 60 16-76 10-82 (127)
187 2oxg_Z SOXZ protein; immunoglo 23.8 1.1E+02 0.0036 23.3 4.6 54 415-481 18-80 (108)
188 2c7h_A RBBP6, retinoblastoma-b 23.4 2.1E+02 0.0071 20.7 5.7 45 1-45 6-52 (86)
189 1pqs_A Cell division control p 23.3 87 0.003 22.2 3.7 35 12-47 3-42 (77)
190 1wvl_A DNA-binding proteins 7A 22.3 68 0.0023 21.5 2.7 18 1-19 1-18 (80)
191 1h4r_A Merlin; FERM, neurofibr 21.4 1E+02 0.0035 28.3 5.1 36 2-39 23-59 (314)
192 3ivf_A Talin-1; FERM domain, c 21.2 1E+02 0.0034 29.2 5.0 37 2-39 86-123 (371)
193 2nnz_A Hypothetical protein; b 20.5 43 0.0015 27.4 1.8 29 2-31 30-61 (153)
No 1
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.4e-71 Score=560.98 Aligned_cols=377 Identities=41% Similarity=0.755 Sum_probs=296.0
Q ss_pred CCchhhhhhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCc
Q 011408 90 DLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPV 169 (486)
Q Consensus 90 ~~~~~~~~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i 169 (486)
|++++++++....|+||.|+||||||||+||+|+++|+||++++.+......+.......+++++|+.||..|+.+..++
T Consensus 1 d~~~~~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~v 80 (404)
T 2ayn_A 1 DMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSI 80 (404)
T ss_dssp ----------CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred CCCHHHHHhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcCCCcC
Confidence 46777777778899999999999999999999999999999999876432122222456899999999999999877899
Q ss_pred chHHHHHHHHhhCCccccc-CCCCCCCchHHHHHHHHHHHHHHhhccCCC----------------CCCCccccccceEE
Q 011408 170 APMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNA----------------SEIPDTVKALFGID 232 (486)
Q Consensus 170 ~p~~~~~~l~~~~~~f~~~-~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~----------------~~~~~~i~~~F~~~ 232 (486)
+|..|+.+++...|.|++. ..++++||||+|||.+||+.|++++..... ....+.|.++|+|+
T Consensus 81 ~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~F~G~ 160 (404)
T 2ayn_A 81 PPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVE 160 (404)
T ss_dssp CCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------CCHHHHHTCEE
T ss_pred ChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcccccchhhhhhhhccccCchhhhhccEE
Confidence 9999999999999999864 234689999999999999999999865321 11246799999999
Q ss_pred EEEEEEeCCCCCe--eeecCceEEEEEeccCCcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEE
Q 011408 233 IVSRVHCQESGEE--SSETESIYALKCHISHEVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVR 310 (486)
Q Consensus 233 ~~~~~~C~~c~~~--s~~~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~R 310 (486)
+.++++|..|++. +.+.|+|+.|+|+|+...++|+++|+.++.+++.+.|++|++...+.|+..|.+||+||+|||+|
T Consensus 161 l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~l~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkR 240 (404)
T 2ayn_A 161 FETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVR 240 (404)
T ss_dssp EEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEEC
T ss_pred EEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhcccceeecchhhCCccceeeeeeHhhCCCceEEEEEE
Confidence 9999999999999 48999999999999988789999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCC
Q 011408 311 FFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNG 390 (486)
Q Consensus 311 f~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (486)
|.|+..++...|+.+.|.||..|||.+|+..+.+..+.+.|+.+++.++...+.++ ++.. ..+..+.+.
T Consensus 241 F~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~------- 309 (404)
T 2ayn_A 241 FFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQP--NTSD--KKSSPQKEV------- 309 (404)
T ss_dssp BCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC-------------------------------
T ss_pred EEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhh--hhcc--ccccccccc-------
Confidence 99998777889999999999999999999999888888888766554443322211 0000 000000000
Q ss_pred CCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCC
Q 011408 391 SGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGD 470 (486)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~ 470 (486)
..++ ..+ ..+........|+|+|||+|.|.++++|||+||||..++.||+|||+.|+++++++|+...|||+
T Consensus 310 ----~~e~--~~~--~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~ 381 (404)
T 2ayn_A 310 ----KYEP--FSF--ADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGD 381 (404)
T ss_dssp ------CC--CCC--SCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSS
T ss_pred ----cccc--ccc--ccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCC
Confidence 0000 000 01223455689999999999998899999999999669999999999999999999999999999
Q ss_pred CceEEEEEEeeccCC
Q 011408 471 WHMAYICMYKARSIS 485 (486)
Q Consensus 471 ~~~aYlLfY~r~~~~ 485 (486)
|++||||||+|+++.
T Consensus 382 ~~~aYiLfY~r~~~~ 396 (404)
T 2ayn_A 382 WHIAYVLLYGPRRVE 396 (404)
T ss_dssp SCEEEEEEEECC---
T ss_pred CceEEEEEEEecCCC
Confidence 999999999998753
No 2
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=1.9e-69 Score=546.62 Aligned_cols=376 Identities=31% Similarity=0.530 Sum_probs=289.7
Q ss_pred hhccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCC----CchhHHHHHHHHHHHHhcCCC-CCcch
Q 011408 97 VLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVD----QSSHMLTVATSELFNDLDKSV-KPVAP 171 (486)
Q Consensus 97 ~~~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~l~~~~-~~i~p 171 (486)
......|+||.|+||||||||+||+|+++|+||++++.+.......... ....+++++|+.||..|+.+. .+++|
T Consensus 18 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 18 QQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp -CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred cccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 4556689999999999999999999999999999999876443221110 025799999999999999887 89999
Q ss_pred HHHHHHHHhhCCcccccCCC--CCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCee--e
Q 011408 172 MQFWMLLRKKYPQFGQLHNG--TFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEES--S 247 (486)
Q Consensus 172 ~~~~~~l~~~~~~f~~~~~~--~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s--~ 247 (486)
..|+.+++...|.|++.... +++||||+|||.+||+.|++++.. +.|.++|+ ++.++++|..|++.+ .
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~-------~~i~~~F~-~~~~~~~C~~C~~~s~s~ 169 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD-------KFSEDFRI-QFKTTIKDTANDNDITVK 169 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------HHHTTTCE-EEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------chHHHHHH-hheEEEEECCCCCCcccc
Confidence 99999999999999875332 679999999999999999999863 56999999 999999999999985 6
Q ss_pred ecCceEEEEEeccCCcchHHHHHHhhhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccc
Q 011408 248 ETESIYALKCHISHEVNHLHEGLKHGLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKV 327 (486)
Q Consensus 248 ~~e~~~~l~l~i~~~~~~l~~~l~~~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v 327 (486)
+.|+|+.|+|+|+...++|+++|+.++.+++.+.|+.|++...+.++..|.+||+||+|||+||.|+..++...|+.+.|
T Consensus 170 ~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V 249 (415)
T 1vjv_A 170 ENESDSKLQCHISGTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKV 249 (415)
T ss_dssp CCCEESCEEECCCTTCCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCC
T ss_pred ccccceeeeeccccccchHHHHHHHHhhhhhhhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCcc
Confidence 99999999999998878999999999999999999999999999999999999999999999999998777889999999
Q ss_pred cccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCC-------CC----ccc
Q 011408 328 DYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGS-------GE----SSV 396 (486)
Q Consensus 328 ~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~ 396 (486)
.||..|||.+|+..+++..+.+.|+.+++.+....+..+..++.+. ++. |.+....+ ... .+ +..
T Consensus 250 ~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~-~~~--~~~~~~~~-~~~e~~~~~~~~~~~~~~~ 325 (415)
T 1vjv_A 250 VFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKF-DPS--SSENVMTP-REQYETQVALNESEKDQWL 325 (415)
T ss_dssp BCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC-------------------CCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccc-ccc--cccccccc-chhhhhchhhHHhhhhhhh
Confidence 9999999999999999888888888887776654443221111100 000 00000000 000 00 000
Q ss_pred ccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc--cCCeEEEeeCCCceecChhhhhhccCCCCCceE
Q 011408 397 ASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ--ESGKWIEYDDDNPLPQREEDITKLSGGGDWHMA 474 (486)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~--~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~a 474 (486)
..+....+...+........|+|+|||+|.|.++++|||+||||. .++.||+|||+.|+++++++|....|||+|++|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~a 405 (415)
T 1vjv_A 326 EEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSA 405 (415)
T ss_dssp HHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEE
T ss_pred hhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceE
Confidence 000000000011223556789999999999988999999999996 589999999999999999999999999999999
Q ss_pred EEEEEeeccC
Q 011408 475 YICMYKARSI 484 (486)
Q Consensus 475 YlLfY~r~~~ 484 (486)
|||||+|+++
T Consensus 406 YiLfY~r~~l 415 (415)
T 1vjv_A 406 LILMYKGFGL 415 (415)
T ss_dssp EEEEEEETTC
T ss_pred EEEEEEecCC
Confidence 9999999875
No 3
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-64 Score=500.09 Aligned_cols=302 Identities=27% Similarity=0.393 Sum_probs=259.5
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCC--CCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSN--DVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWM 176 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~ 176 (486)
.++++||.|+||||||||+||+|+++|+|+++++........+ .+.....+++++|+.||..|+.+. ..++|..|+.
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~~ 84 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKT 84 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHHH
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 4578999999999999999999999999999999765332221 122345689999999999999876 7899999999
Q ss_pred HHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC--------------------------CCCccccccce
Q 011408 177 LLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS--------------------------EIPDTVKALFG 230 (486)
Q Consensus 177 ~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--------------------------~~~~~i~~~F~ 230 (486)
+++...|.|. +++||||||||.+||+.|++++...... ...+.|.++|+
T Consensus 85 ~l~~~~~~f~-----~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~ 159 (367)
T 2y6e_A 85 QVGRFAPQFS-----GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFH 159 (367)
T ss_dssp HHHHHCGGGC-----SSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHhhhhcC-----CCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccC
Confidence 9999999998 8899999999999999999998643211 01356899999
Q ss_pred EEEEEEEEeCCCCCeeeecCceEEEEEeccCC------------------cchHHHHHHhhhhhh-h----hhcCcccCC
Q 011408 231 IDIVSRVHCQESGEESSETESIYALKCHISHE------------------VNHLHEGLKHGLKSE-L----EKASPALGR 287 (486)
Q Consensus 231 ~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~------------------~~~l~~~l~~~~~~~-~----~~~c~~c~~ 287 (486)
|++.++++|..|++.+.+.|+|+.|+|+|+.. ..+|++||+.|+..+ + .++|++|+.
T Consensus 160 G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~ 239 (367)
T 2y6e_A 160 GLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKK 239 (367)
T ss_dssp EEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTE
T ss_pred cEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCC
Confidence 99999999999999999999999999999753 358999999998644 3 368999999
Q ss_pred cceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccc-eeccccccChhhhccccchhhHhhhHhhcccCccc
Q 011408 288 SAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPL-ELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKG 366 (486)
Q Consensus 288 ~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (486)
...+.|+..|.++|+||+|||+||.|+. ....|+.+.|.||. .|||.+|+...
T Consensus 240 ~~~a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~------------------------ 293 (367)
T 2y6e_A 240 HQQATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL------------------------ 293 (367)
T ss_dssp EECCEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCS------------------------
T ss_pred CceEEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCChhhhccCC------------------------
Confidence 9999999999999999999999999986 34689999999997 79999998642
Q ss_pred CCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEcc-CCe
Q 011408 367 GEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQE-SGK 445 (486)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~-~~~ 445 (486)
......|+|+|||+|.|. +++|||+||+|.. +++
T Consensus 294 --------------------------------------------~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~ 328 (367)
T 2y6e_A 294 --------------------------------------------SARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGK 328 (367)
T ss_dssp --------------------------------------------SSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCC
T ss_pred --------------------------------------------CCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCe
Confidence 123468999999999995 8999999999974 789
Q ss_pred EEEeeCCCceecChhhhhhccCCCCCceEEEEEEeeccC
Q 011408 446 WIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSI 484 (486)
Q Consensus 446 W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~~~ 484 (486)
||+|||+.|+++++++|.. ..||||||+|++.
T Consensus 329 W~~fnD~~V~~v~~~~v~~-------~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 329 WYYFDDSNVSLASEDQIVT-------KAAYVLFYQRRDD 360 (367)
T ss_dssp EEEEETTEEEECCGGGTSS-------TTEEEEEEEECCC
T ss_pred EEEECCCCceECCHHHcCC-------CCcEEEEEEEcCC
Confidence 9999999999999999986 6899999999873
No 4
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.9e-63 Score=491.98 Aligned_cols=303 Identities=25% Similarity=0.403 Sum_probs=261.7
Q ss_pred ccCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCC-C-CCcchHHHHH
Q 011408 99 SLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKS-V-KPVAPMQFWM 176 (486)
Q Consensus 99 ~~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~-~~i~p~~~~~ 176 (486)
...+++||.|+||||||||+||+|+++|+||++++................+++++|+.||..|+.. . ..++|..|+.
T Consensus 5 ~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~~~ 84 (348)
T 3nhe_A 5 SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKT 84 (348)
T ss_dssp -CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTCCTTCEECCHHHHH
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcCCCCCccCHHHHHH
Confidence 3457899999999999999999999999999999976544443333456789999999999999843 3 8899999999
Q ss_pred HHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC--------------------------CCCccccccce
Q 011408 177 LLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS--------------------------EIPDTVKALFG 230 (486)
Q Consensus 177 ~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--------------------------~~~~~i~~~F~ 230 (486)
+++...+.|. +++||||+|||.+||+.|++++...... ...+.|.++|+
T Consensus 85 ~l~~~~~~f~-----~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~ 159 (348)
T 3nhe_A 85 QIQRYAPRFV-----GYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFV 159 (348)
T ss_dssp HHHHHSGGGS-----SSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHC
T ss_pred HHHHhhhhhC-----CCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccc
Confidence 9999999998 8899999999999999999998643111 12356899999
Q ss_pred EEEEEEEEeCCCCCeeeecCceEEEEEeccCCc---chHHHHHHhhhhhhhh-----hcCcccCCcceEeeeeEecccCC
Q 011408 231 IDIVSRVHCQESGEESSETESIYALKCHISHEV---NHLHEGLKHGLKSELE-----KASPALGRSAVYLKESCINGLPR 302 (486)
Q Consensus 231 ~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~~---~~l~~~l~~~~~~~~~-----~~c~~c~~~~~~~k~~~i~~lP~ 302 (486)
|++.++++|..|++.+.+.|+|+.|+|+|+... .+|+++|+.|+.++.. +.|++|+....+.++..|.++|+
T Consensus 160 g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~ 239 (348)
T 3nhe_A 160 GQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPK 239 (348)
T ss_dssp EEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCS
T ss_pred eEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCc
Confidence 999999999999999999999999999998642 4899999999875433 68999999999999999999999
Q ss_pred ceEEEEEEEEEecccccccccccccccc-ceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccc
Q 011408 303 YLTIQFVRFFWKRESNQKAKILRKVDYP-LELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMT 381 (486)
Q Consensus 303 ~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (486)
+|+|||+||.++. +...|+...|.|| ..|||.+|+..+
T Consensus 240 vL~i~lkRf~~~~--~~~~K~~~~v~fp~~~ldl~~~~~~~--------------------------------------- 278 (348)
T 3nhe_A 240 ILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASEN--------------------------------------- 278 (348)
T ss_dssp EEEEEECCBCCCS--SCCCBCCCCEECCSSCEECGGGBCTT---------------------------------------
T ss_pred eEEEEEEcccccC--CceeecCcceeccCCcCCHhhhcCCC---------------------------------------
Confidence 9999999998765 5678999999999 589999998652
Q ss_pred cccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChh
Q 011408 382 EAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREE 460 (486)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~ 460 (486)
.....|+|+|||+|.| ++++|||+||+|. .++.||+|||+.|++++++
T Consensus 279 ------------------------------~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~ 327 (348)
T 3nhe_A 279 ------------------------------TNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSS 327 (348)
T ss_dssp ------------------------------CCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGG
T ss_pred ------------------------------CCCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCceECCHH
Confidence 2336899999999999 6999999999997 4789999999999999999
Q ss_pred hhhhccCCCCCceEEEEEEeeccCC
Q 011408 461 DITKLSGGGDWHMAYICMYKARSIS 485 (486)
Q Consensus 461 ~v~~~~~g~~~~~aYlLfY~r~~~~ 485 (486)
+|.. .+||||||+|++.|
T Consensus 328 ~v~~-------~~aY~LfY~r~~~~ 345 (348)
T 3nhe_A 328 QVRT-------SDAYLLFYELASPP 345 (348)
T ss_dssp GTCC-------TTEEEEEEEECC--
T ss_pred HcCC-------CCceEEEEEecCCC
Confidence 9975 68999999999865
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=1.2e-62 Score=485.35 Aligned_cols=299 Identities=28% Similarity=0.446 Sum_probs=250.1
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLR 179 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~ 179 (486)
..+++||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+.+..++.|..|+..+.
T Consensus 3 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~ 77 (353)
T 1nb8_A 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG 77 (353)
T ss_dssp CSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-----SCTTTCHHHHHHHHHHHHHHCSSCBCCHHHHHHHT
T ss_pred CCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-----CcccccHHHHHHHHHHHHhhcCCCCCCHHHHhhcC
Confidence 3578999999999999999999999999999998654211 13346799999999999998888899999887764
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
.+.|. +++||||+|||.+||+.|++++... ...+.|.++|+|++.++++|..|++.+.+.|+|+.|+|+|
T Consensus 78 --~~~~~-----~~~QqDA~EFl~~LLd~L~~~~~~~---~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i 147 (353)
T 1nb8_A 78 --WETLD-----SFMQHDVQELCRVLLDNVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 147 (353)
T ss_dssp --CCBTT-----TTTTSCHHHHHHHHHHHHHHHTTTS---TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECC
T ss_pred --CCCCC-----cccchhHHHHHHHHHHHHHHHhcCC---CccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEE
Confidence 24454 8899999999999999999988653 2356799999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhhhhhh-h----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceec
Q 011408 260 SHEVNHLHEGLKHGLKSE-L----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELD 334 (486)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~-~----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ld 334 (486)
+.. .+|.++|..|+..+ + .+.|+.|+ ...+.++..|.++|+||+|||+||.|+..++...|+.+.|.||+.||
T Consensus 148 ~~~-~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ld 225 (353)
T 1nb8_A 148 KGK-KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 225 (353)
T ss_dssp TTC-SBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEE
T ss_pred CCC-cchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeee
Confidence 875 58999999988643 3 25799986 45678999999999999999999999987677899999999999999
Q ss_pred cccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCC
Q 011408 335 VYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLT 414 (486)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (486)
|.+|+.... ....
T Consensus 226 l~~~~~~~~-------------------------------------------------------------------~~~~ 238 (353)
T 1nb8_A 226 LDEFLQKTD-------------------------------------------------------------------PKDP 238 (353)
T ss_dssp CGGGBSSCC-------------------------------------------------------------------TTSC
T ss_pred hhhhhcccC-------------------------------------------------------------------CCCC
Confidence 999986410 1234
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCC--------CceEEEEEEeecc
Q 011408 415 GIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGD--------WHMAYICMYKARS 483 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~--------~~~aYlLfY~r~~ 483 (486)
..|+|+|||+|.|. +++|||+||+|+ .++.||+|||+.|+++++++|+..++||. +.+||||||+|++
T Consensus 239 ~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~ 315 (353)
T 1nb8_A 239 ANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315 (353)
T ss_dssp CEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETT
T ss_pred ceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECc
Confidence 68999999999995 899999999996 68999999999999999999988776653 5799999999986
No 6
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=4.9e-63 Score=495.11 Aligned_cols=300 Identities=26% Similarity=0.373 Sum_probs=257.0
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCC--CCCCchhHHHHHHHHHHHHhcCCC-CCcchHHHHHH
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSN--DVDQSSHMLTVATSELFNDLDKSV-KPVAPMQFWML 177 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~-~~i~p~~~~~~ 177 (486)
.+++||.|+||||||||+||+|+++|+|+++++........+ .......+++++|..|++.||.+. ..++|..|+.+
T Consensus 60 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~~~ 139 (396)
T 2gfo_A 60 PALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKIT 139 (396)
T ss_dssp TTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHHHH
T ss_pred CCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHHHH
Confidence 468999999999999999999999999999998754221111 111334689999999999999776 78999999999
Q ss_pred HHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC--------------------------CCCccccccceE
Q 011408 178 LRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS--------------------------EIPDTVKALFGI 231 (486)
Q Consensus 178 l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~--------------------------~~~~~i~~~F~~ 231 (486)
++...+.|. +++||||+|||.+||+.|++++...... ...+.|.++|+|
T Consensus 140 l~~~~~~f~-----~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G 214 (396)
T 2gfo_A 140 IGKINDQFA-----GYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQG 214 (396)
T ss_dssp HHHHCGGGS-----SSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred HHHhchhhc-----CCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCc
Confidence 999999998 8899999999999999999998653110 124569999999
Q ss_pred EEEEEEEeCCCCCeeeecCceEEEEEeccCC-cchHHHHHHhhhhhhh-----hhcCcccCCcceEeeeeEecccCCceE
Q 011408 232 DIVSRVHCQESGEESSETESIYALKCHISHE-VNHLHEGLKHGLKSEL-----EKASPALGRSAVYLKESCINGLPRYLT 305 (486)
Q Consensus 232 ~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~-~~~l~~~l~~~~~~~~-----~~~c~~c~~~~~~~k~~~i~~lP~~L~ 305 (486)
++.++++|..|++.+.+.|+|+.|+|+|+.. ..+|++||+.|+..+. .+.|++|+....+.|+..|.++|+||+
T Consensus 215 ~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLi 294 (396)
T 2gfo_A 215 QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 294 (396)
T ss_dssp EEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEE
T ss_pred EEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEE
Confidence 9999999999999999999999999999864 4689999999987443 268999999999999999999999999
Q ss_pred EEEEEEEEeccccccccccccccccc-eeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCcccccccc
Q 011408 306 IQFVRFFWKRESNQKAKILRKVDYPL-ELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAE 384 (486)
Q Consensus 306 i~l~Rf~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (486)
|||+||.|+.. ...|+...|.||. .|||.+|+..+
T Consensus 295 ihLkRF~~~~~--~~~K~~~~v~fp~~~Ldl~~~~~~~------------------------------------------ 330 (396)
T 2gfo_A 295 VHLKRFSYDGR--WKQKLQTSVDFPLENLDLSQYVIGP------------------------------------------ 330 (396)
T ss_dssp EEECCEEECSS--SEEECCCEEECCSSCBCCGGGBCSC------------------------------------------
T ss_pred EEecceeccCc--cceecCceEecchhhccccccccCC------------------------------------------
Confidence 99999999863 4579999999995 79999988641
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEcc-CCeEEEeeCCCceecChhhhh
Q 011408 385 GSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQE-SGKWIEYDDDNPLPQREEDIT 463 (486)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~-~~~W~~~nD~~V~~~~~~~v~ 463 (486)
......|+|+|||+|.| ++++|||+||+|+. ++.||+|||+.|+++++++|.
T Consensus 331 --------------------------~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~ 383 (396)
T 2gfo_A 331 --------------------------KNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVK 383 (396)
T ss_dssp --------------------------CSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHS
T ss_pred --------------------------CCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcC
Confidence 12235799999999999 79999999999973 799999999999999999998
Q ss_pred hccCCCCCceEEEEEEeecc
Q 011408 464 KLSGGGDWHMAYICMYKARS 483 (486)
Q Consensus 464 ~~~~g~~~~~aYlLfY~r~~ 483 (486)
. ..||||||+|++
T Consensus 384 ~-------~~aYiLfY~r~~ 396 (396)
T 2gfo_A 384 S-------SAAYILFYTSLG 396 (396)
T ss_dssp C-------TTEEEEEEECC-
T ss_pred C-------CCceEEEEEEcC
Confidence 5 689999999975
No 7
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3e-62 Score=484.77 Aligned_cols=298 Identities=27% Similarity=0.392 Sum_probs=250.8
Q ss_pred CCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC--CCcchHHHHHHHH
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV--KPVAPMQFWMLLR 179 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~i~p~~~~~~l~ 179 (486)
+.+||.|+||||||||+||+|+++|+||++++......... ......+++++|+.||..|+... ..++|..|+.+++
T Consensus 2 G~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~l~ 80 (355)
T 3i3t_A 2 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP-GGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQ 80 (355)
T ss_dssp -CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC-------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHHHH
T ss_pred CCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcC-CCCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 57999999999999999999999999999998754221111 11334689999999999999865 7899999999999
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCC----------------------------------------
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNAS---------------------------------------- 219 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---------------------------------------- 219 (486)
...+.|. +++||||+|||.+||+.|++++......
T Consensus 81 ~~~~~f~-----~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (355)
T 3i3t_A 81 KYVPSFS-----GYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYL 155 (355)
T ss_dssp HHCGGGC-----SSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHH
T ss_pred HhChhhC-----CCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhh
Confidence 9999998 8899999999999999999998643111
Q ss_pred -CCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEeccCC-----cchHHHHHHhhhhhh-hh----hcCcccCCc
Q 011408 220 -EIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHISHE-----VNHLHEGLKHGLKSE-LE----KASPALGRS 288 (486)
Q Consensus 220 -~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i~~~-----~~~l~~~l~~~~~~~-~~----~~c~~c~~~ 288 (486)
...+.|.++|+|++.+.++|..|++.+.+.|+|+.|+|+|+.. ..+|+++|+.|+..+ ++ +.|++|+..
T Consensus 156 ~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~ 235 (355)
T 3i3t_A 156 EREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQK 235 (355)
T ss_dssp HHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCC
T ss_pred hccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCc
Confidence 0135589999999999999999999999999999999999753 348999999998643 33 789999999
Q ss_pred ceEeeeeEecccCCceEEEEEEEEEecccccccccccccccc-ceeccccccChhhhccccchhhHhhhHhhcccCcccC
Q 011408 289 AVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYP-LELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGG 367 (486)
Q Consensus 289 ~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (486)
..+.|+..|.++|++|+|||+||.++. +...|+...|.|| +.|||.+|+...
T Consensus 236 ~~a~k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~~------------------------- 288 (355)
T 3i3t_A 236 TRSTKKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDFPLQRLSLGDFASDK------------------------- 288 (355)
T ss_dssp CCEEEEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBCCSSCEECGGGBC---------------------------
T ss_pred cceEEEEEcccCChheEEEhhheecCC--CCceECCcceeCCccccCchhhccCC-------------------------
Confidence 999999999999999999999999875 5678999999999 569999988642
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEE
Q 011408 368 EKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWI 447 (486)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~ 447 (486)
.....|+|+|||+|.| ++++|||+||+| ..+.||
T Consensus 289 --------------------------------------------~~~~~Y~L~avv~H~G-~~~~GHY~~~~~-~~~~W~ 322 (355)
T 3i3t_A 289 --------------------------------------------AGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWH 322 (355)
T ss_dssp ----------------------------------------------CCEEEEEEEEEEEE-ETTEEEEEEEEE-ETTEEE
T ss_pred --------------------------------------------CCCcceEEEEEEEecC-CCCCCeEEEEEE-cCCeEE
Confidence 2336899999999999 699999999999 677899
Q ss_pred EeeCCCceecChhhhhhccCCCCCceEEEEEEeeccCC
Q 011408 448 EYDDDNPLPQREEDITKLSGGGDWHMAYICMYKARSIS 485 (486)
Q Consensus 448 ~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r~~~~ 485 (486)
+|||+.|+++++++|.. ..||||||+|++-|
T Consensus 323 ~~nD~~V~~v~~~~v~~-------~~aYiLfY~r~~~~ 353 (355)
T 3i3t_A 323 VYNDSRVSPVSENQVAS-------SEGYVLFYQLMQEP 353 (355)
T ss_dssp EEETTEEEEECHHHHHT-------SCCSEEEEEEC---
T ss_pred EEcCCCcEECCHHHcCC-------CCcEEEEEEeccCC
Confidence 99999999999999986 68999999999865
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-59 Score=483.65 Aligned_cols=299 Identities=28% Similarity=0.435 Sum_probs=253.9
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLR 179 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~i~p~~~~~~l~ 179 (486)
..+++||.|+||||||||+||+|+++|+||++++..... ......++.++|+.||..|+.+..++.|..|+..+.
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~-----~~~~~~~~~~~l~~lf~~l~~~~~~~~~~~l~~~~~ 246 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-----GDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFG 246 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCC-----SSCTTTCHHHHHHHHHHHHHHCSSCBCCTTHHHHTC
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhcccc-----CCcccchHHHHHHHHHHHHhcCCCccCcHHHHhhcC
Confidence 356899999999999999999999999999999865421 113346789999999999998888899998876653
Q ss_pred hhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEeCCCCCeeeecCceEEEEEec
Q 011408 180 KKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHCQESGEESSETESIYALKCHI 259 (486)
Q Consensus 180 ~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~~l~l~i 259 (486)
.+.|. +++||||+|||.+||+.|++++... ...+.|.++|+|++.++++|..|++.+.+.|+|+.|+|+|
T Consensus 247 --~~~~~-----~~~QqDa~Efl~~LLd~L~~~l~~~---~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i 316 (522)
T 2f1z_A 247 --WETLD-----SFMQHDVQELCRVLLDNVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 316 (522)
T ss_dssp --CCTTT-----SSTTSCHHHHHHHHHHHHHHHHTTS---TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECC
T ss_pred --CccCC-----CcccccHHHHHHHHHHHHHhhccCC---ccccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEe
Confidence 13444 8899999999999999999988753 2356799999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHhhhhhh-h----hhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceec
Q 011408 260 SHEVNHLHEGLKHGLKSE-L----EKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELD 334 (486)
Q Consensus 260 ~~~~~~l~~~l~~~~~~~-~----~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ld 334 (486)
+.. .+|.++|..|+..+ + .+.|+.|+ ...+.++..|.+||+||+|||+||.|+..++...|+++.|.||..||
T Consensus 317 ~~~-~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ld 394 (522)
T 2f1z_A 317 KGK-KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLP 394 (522)
T ss_dssp TTC-CBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEE
T ss_pred CCc-ccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeec
Confidence 875 58999999988643 3 35799986 45679999999999999999999999987777899999999999999
Q ss_pred cccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCCCCcccccCCCCCCCCCCcCCCCC
Q 011408 335 VYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGSGESSVASSQDGVTTDTDKETHLT 414 (486)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (486)
|.+|+.... ....
T Consensus 395 l~~~~~~~~-------------------------------------------------------------------~~~~ 407 (522)
T 2f1z_A 395 LDEFLQKTD-------------------------------------------------------------------PKDP 407 (522)
T ss_dssp CGGGBSSCC-------------------------------------------------------------------TTSC
T ss_pred chhhhcccc-------------------------------------------------------------------CCCC
Confidence 999986410 1223
Q ss_pred eeEEEeEEEEeecCCCCCCceEEEEEc-cCCeEEEeeCCCceecChhhhhhccCCCC--------CceEEEEEEeecc
Q 011408 415 GIYDLVAVLTHKGRSADSGHYVAWVKQ-ESGKWIEYDDDNPLPQREEDITKLSGGGD--------WHMAYICMYKARS 483 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~~~~GHY~a~vk~-~~~~W~~~nD~~V~~~~~~~v~~~~~g~~--------~~~aYlLfY~r~~ 483 (486)
..|+|+|||+|.|. +++|||+||+|+ .+++||+|||+.|+++++++|+..++||. +.+||||||+|++
T Consensus 408 ~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~ 484 (522)
T 2f1z_A 408 ANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 484 (522)
T ss_dssp CEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETT
T ss_pred cEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECC
Confidence 68999999999995 899999999996 68899999999999999999988776663 4789999999986
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=5.1e-59 Score=478.45 Aligned_cols=311 Identities=24% Similarity=0.418 Sum_probs=256.2
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCCC----------CCc
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSV----------KPV 169 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~----------~~i 169 (486)
.++.+||.|+||||||||+||+|+++|+||++++........ ....+..++.++|..+|..|+... ..+
T Consensus 138 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~-~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 216 (476)
T 3mhs_A 138 RDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNC-KVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTN 216 (476)
T ss_dssp TTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHC-SSCCTTTCHHHHHHHHHHHHHSCCCC--------CCC
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhc-cCCCcccchHHHHHHHHHHHhhccccccccccccccc
Confidence 357899999999999999999999999999999865432111 112446789999999999998642 245
Q ss_pred chHHHHHHH---HhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCC----------CCCCCccccccceEEEEEE
Q 011408 170 APMQFWMLL---RKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVN----------ASEIPDTVKALFGIDIVSR 236 (486)
Q Consensus 170 ~p~~~~~~l---~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~----------~~~~~~~i~~~F~~~~~~~ 236 (486)
.|..+...+ +...+.|. +++||||+|||.+||+.|++++.... .....+.|.++|+|++.++
T Consensus 217 ~~~~~~~~l~~~~~~~~~f~-----~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~G~l~~~ 291 (476)
T 3mhs_A 217 RQTGFIYLLTCAWKINQNLA-----GYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESS 291 (476)
T ss_dssp SCHHHHHHHHHHHHHCGGGS-----SSSCEEHHHHHHHHHHHHHHHHHHHCCC-------CCCSCCSHHHHHSCEEEEEE
T ss_pred CcchHHHHHHHHHHhccccC-----CCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCcceeecceEEEEE
Confidence 666655554 47778888 88999999999999999999875321 1223567999999999999
Q ss_pred EEeCCCCCee-eecCceEEEEEeccCCcchHHHHHHhhhh-hhhh---hcCcccCCcceEeeeeEecccCCceEEEEEEE
Q 011408 237 VHCQESGEES-SETESIYALKCHISHEVNHLHEGLKHGLK-SELE---KASPALGRSAVYLKESCINGLPRYLTIQFVRF 311 (486)
Q Consensus 237 ~~C~~c~~~s-~~~e~~~~l~l~i~~~~~~l~~~l~~~~~-~~~~---~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf 311 (486)
++|..|+..+ .+.|+|+.|+|+|+.. .+|+++|+.|+. +.++ +.|++|+....+.++..|.++|+||+|||+||
T Consensus 292 ~~C~~C~~~s~~~~e~f~~LsL~i~~~-~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF 370 (476)
T 3mhs_A 292 IVCPGCQNNSKTTIDPFLDLSLDIKDK-KKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRF 370 (476)
T ss_dssp EECTTTCCCCEEEEEEESCEEECCTTC-CBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCE
T ss_pred EEECCCCCeeCCcccchhhhccchhhh-hHHHHHHHHhcChhhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeec
Confidence 9999999996 5599999999999876 589999999986 4444 78999999999999999999999999999999
Q ss_pred EEeccccccccccccccccceeccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCccccccccCCCCCCC
Q 011408 312 FWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDNDVKMTEAEGSASNGS 391 (486)
Q Consensus 312 ~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (486)
.|+.. +...|+.+.|.||..|||.+|+........
T Consensus 371 ~~~~~-~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~-------------------------------------------- 405 (476)
T 3mhs_A 371 EHLLN-GSNRKLDDFIEFPTYLNMKNYCSTKEKDKH-------------------------------------------- 405 (476)
T ss_dssp EECTT-SCEEECCCCCBCCSEEECGGGBSCCBCCC---------------------------------------------
T ss_pred cccCC-CCeEECCEEEcCCCeeechhhcCccccccc--------------------------------------------
Confidence 99864 457899999999999999999876311000
Q ss_pred CCcccccCCCCCCCCCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCC
Q 011408 392 GESSVASSQDGVTTDTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDW 471 (486)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~ 471 (486)
..........|+|+|||+|.| ++++|||+||+|..+++||+|||+.|+++++++|..
T Consensus 406 ---------------~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~------- 462 (476)
T 3mhs_A 406 ---------------SENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLK------- 462 (476)
T ss_dssp ----------------CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTT-------
T ss_pred ---------------ccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhcc-------
Confidence 000123457899999999999 599999999999778999999999999999999987
Q ss_pred ceEEEEEEeeccCC
Q 011408 472 HMAYICMYKARSIS 485 (486)
Q Consensus 472 ~~aYlLfY~r~~~~ 485 (486)
..||||||+|+++.
T Consensus 463 ~~aYiLfY~r~~~n 476 (476)
T 3mhs_A 463 EQAYLLFYTIRQVN 476 (476)
T ss_dssp SCEEEEEEEEEEEC
T ss_pred CCcEEEEEEEecCC
Confidence 68999999998763
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-58 Score=497.22 Aligned_cols=232 Identities=23% Similarity=0.357 Sum_probs=201.3
Q ss_pred CCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHHhcCC---------------
Q 011408 101 GHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKS--------------- 165 (486)
Q Consensus 101 ~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------- 165 (486)
++++||.|+||||||||+||+|+++|+||++|+................++.++|+.||..|+..
T Consensus 342 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~ 421 (854)
T 3ihp_A 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERV 421 (854)
T ss_dssp TTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------------
T ss_pred CCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccc
Confidence 46799999999999999999999999999999743211100122356679999999999999753
Q ss_pred ------CCCcchHHHHHHHHhhCCcccccCCCCCCCchHHHHHHHHHHHHHHhhccCCCCCCCccccccceEEEEEEEEe
Q 011408 166 ------VKPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDTVKALFGIDIVSRVHC 239 (486)
Q Consensus 166 ------~~~i~p~~~~~~l~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C 239 (486)
...++|..|+.+++...+.|. +++||||+|||.+||+.|++++.. .+.+.++|+|++.++++|
T Consensus 422 ~~~~~~~~~isP~~f~~~l~~~~~~F~-----~~~QQDA~EFl~~LLd~L~~el~~------~s~i~~lF~G~l~s~i~C 490 (854)
T 3ihp_A 422 PEQKEVQDGIAPRMFKALIGKGHPEFS-----TNRQQDAQEFFLHLINMVERNCRS------SENPNEVFRFLVEEKIKC 490 (854)
T ss_dssp -------CCBCCHHHHHHHTTTCTTTT-----SSSCCBHHHHHHHHHHHHHHTCTT------SCCGGGGTCEEEEEEEEE
T ss_pred cccccCCCccChHHHHHHHhhhccccc-----cccccCHHHHHHHHHHHHHHHhcc------cCCchhhcCceEEEEEEe
Confidence 258999999999999999998 889999999999999999998854 356999999999999999
Q ss_pred CCCCCeeeecCceEEEEEeccCCc-------------------------------chHHHHHHhhhh-hhhh-hcCcccC
Q 011408 240 QESGEESSETESIYALKCHISHEV-------------------------------NHLHEGLKHGLK-SELE-KASPALG 286 (486)
Q Consensus 240 ~~c~~~s~~~e~~~~l~l~i~~~~-------------------------------~~l~~~l~~~~~-~~~~-~~c~~c~ 286 (486)
..|++.+.+.++|+.|+|+|+... .+|++||+.|+. +.++ ++|++|+
T Consensus 491 ~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~ 570 (854)
T 3ihp_A 491 LATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQ 570 (854)
T ss_dssp TTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTTT
T ss_pred cCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeeeeeccccC
Confidence 999999999999999999998531 389999999997 4455 6999999
Q ss_pred CcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccceeccccccChhhh
Q 011408 287 RSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLR 344 (486)
Q Consensus 287 ~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~ 344 (486)
..+.+.|+..|.+||+||+|||+||.|+.. +...|++..|.||+.|||++|+..+.+
T Consensus 571 ~k~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~~~~q 627 (854)
T 3ihp_A 571 AKSVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTGLQ 627 (854)
T ss_dssp EEEEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBCCCSC
T ss_pred CcceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhccCCCC
Confidence 999999999999999999999999999876 567899999999999999999987543
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=100.00 E-value=5.5e-44 Score=337.44 Aligned_cols=287 Identities=21% Similarity=0.220 Sum_probs=183.0
Q ss_pred cCCCcccCccccchhhhhHHHHHhccHHHHHHHHhcccCCCCCCCCCchhHHHHHH-HHHHHHhcCCCCCcchHHHHHHH
Q 011408 100 LGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVAT-SELFNDLDKSVKPVAPMQFWMLL 178 (486)
Q Consensus 100 ~~~~~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~l~~~~~~i~p~~~~~~l 178 (486)
.+.|+||.|+||||||||+||+|+++|++++.|+.+...... ......+..+| +.||..|.. ..+.|..|+..|
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~---~~~~~~l~~~L~r~i~~~Lrk--~~~~P~~~l~~L 80 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND---VEYYSETQELLRTEIVNPLRI--YGYVCATKIMKL 80 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS---CTTHHHHHHHHHHTTHHHHHH--TSEECHHHHHHH
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc---chhHHHHHHHHHHHHHHHHhh--cCCCcHHHHHHH
Confidence 457999999999999999999999999999999988533211 23335788899 899999987 899999999999
Q ss_pred HhhCCcccccCCCCCCCchHHHHHHHHHHHHHHh-hc--cC--CCCCCCccccccceEEEEEEEEeCCCCCeeeecCceE
Q 011408 179 RKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQS-LR--SV--NASEIPDTVKALFGIDIVSRVHCQESGEESSETESIY 253 (486)
Q Consensus 179 ~~~~~~f~~~~~~~~~QqDa~Efl~~ll~~l~~~-~~--~~--~~~~~~~~i~~~F~~~~~~~~~C~~c~~~s~~~e~~~ 253 (486)
++.+|+|++....+++||||+|||..||..|... +. .. ......+.+.++|. +-.... ..+.+
T Consensus 81 R~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s~~~~~~~~~~~q~f~----------E~~e~~-~~e~~- 148 (374)
T 2vhf_A 81 RKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFM----------EKNEKV-GVPTI- 148 (374)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEETTCCCEEESCEECCC----------CCC--C-CCCBH-
T ss_pred HHHhHHHhcccCCCccccCHHHHHHHHHHHHhhcccccccccccccccccHHHHHhc----------Cccccc-CCcHH-
Confidence 9999999988555899999999999999998765 31 10 00011134555555 111111 12222
Q ss_pred EEEEeccCCcchHHHHHHh-hhhhhhhhcCcccCCcceEeeeeEecccCCceEEEEEEEEEeccccccccccccccccce
Q 011408 254 ALKCHISHEVNHLHEGLKH-GLKSELEKASPALGRSAVYLKESCINGLPRYLTIQFVRFFWKRESNQKAKILRKVDYPLE 332 (486)
Q Consensus 254 ~l~l~i~~~~~~l~~~l~~-~~~~~~~~~c~~c~~~~~~~k~~~i~~lP~~L~i~l~Rf~~~~~~~~~~Ki~~~v~fp~~ 332 (486)
...++. |+..-| .|.++|+||+||+.|| +++.||.++|.||.+
T Consensus 149 -------------~qL~e~nfl~~gi-----------------kisrLP~yLtVq~vRF------gKkaKIlrkV~fp~e 192 (374)
T 2vhf_A 149 -------------QQLLEWSFINSNL-----------------KFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLE 192 (374)
T ss_dssp -------------HHHHHHHHHHHTE-----------------EESSCCSEEEEECCCC------SSSSSCCCCCBCCSE
T ss_pred -------------HHhhhHHHHHcCC-----------------eeecCCcceEEeeecc------CccccccCCCCCcch
Confidence 222221 222221 3999999999999999 778999999999999
Q ss_pred eccccccChhhhccccchhhHhhhHhhcccCcccCCCCCCCCCCc-c-----ccccccCCCCCCCCCcccccCCCCCCC-
Q 011408 333 LDVYDFCSDDLRKKLDAPRQKLRDEEGKKLGLKGGEKSSNSKDND-V-----KMTEAEGSASNGSGESSVASSQDGVTT- 405 (486)
Q Consensus 333 Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~- 405 (486)
||+.++|++++++ .++|+++++++- .++.++.+....+ . ...++.....-.........++.....
T Consensus 193 LDvtdl~tdelr~--~~vr~kl~e~e~-----~~~~k~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (374)
T 2vhf_A 193 LNITDLLEDTPRQ--CRICGGLAMYEC-----RECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDW 265 (374)
T ss_dssp ECCGGGBSSSCCB--CTTTSCBCCEEC-----GGGTTCTTTTTTSCCEECHHHHHHHTTSGGGTTCCCEECCC-------
T ss_pred hccHhhcCcchhh--ccHhHHHHHHHH-----HHHHhhhhccccccccccchhhhhhhhhhhhhcccccccccCcccccc
Confidence 9999999999988 888888877622 2222222211101 0 000000000000111111112211111
Q ss_pred CCCcCCCCCeeEEEeEEEEeecCCCCCCceEEEEEc--cCCeEEEeeC
Q 011408 406 DTDKETHLTGIYDLVAVLTHKGRSADSGHYVAWVKQ--ESGKWIEYDD 451 (486)
Q Consensus 406 ~~~~~~~~~~~Y~L~aVv~H~G~~~~~GHY~a~vk~--~~~~W~~~nD 451 (486)
..+...++++.|+|+|||| +++|||+||||. .+++|++||-
T Consensus 266 ~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 266 DWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp ---------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEET
T ss_pred ccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEec
Confidence 1245567778999999999 889999999997 6899999996
No 12
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.2e-17 Score=128.85 Aligned_cols=82 Identities=52% Similarity=0.929 Sum_probs=76.4
Q ss_pred CeEEEEEeCCeEE-EEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccccccC
Q 011408 1 MLTVSVKWQKEVF-SNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADEIVK 79 (486)
Q Consensus 1 ~~~~~v~~~~~~~-~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~~~~ 79 (486)
||+|+|||+|++| + |+|++++||.+||++|++++|||+++|||+++|+.|+|+ +|.+|+|++|.+++|++++.+.+.
T Consensus 7 ~m~i~Vk~~g~~~~~-l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~~~~ 84 (96)
T 1wgg_A 7 GYSVTVKWGKEKFEG-VELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADALPE 84 (96)
T ss_dssp EEEEEEEETTEEEEE-EEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCCCCC
T ss_pred EEEEEEEECCEEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchhcCC
Confidence 5889999999999 8 999999999999999999999999999999999999999 999999999999999999987666
Q ss_pred CCCCC
Q 011408 80 APEKG 84 (486)
Q Consensus 80 ~p~~~ 84 (486)
.|.++
T Consensus 85 ~p~~~ 89 (96)
T 1wgg_A 85 EPSAK 89 (96)
T ss_dssp CCCCS
T ss_pred CCCcC
Confidence 56544
No 13
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.65 E-value=1.6e-16 Score=122.64 Aligned_cols=76 Identities=38% Similarity=0.552 Sum_probs=72.5
Q ss_pred CeEEEEEeCCeEEEEE-EeCCCCCHHHHHHHHHHhhCCCCCceEEE---ecCCcCCCCccccccCcCCCCeEEEeecccc
Q 011408 1 MLTVSVKWQKEVFSNV-EIDTSQTPYVFKCQLYDLTGVPPERQKIM---VKGGLLKDDSDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~-~~~~~~tv~~lk~~l~~~~~vp~~~qkl~---~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
+++|+|+|+|++|+ | +|++++||.+||++|++++|||+++|||+ ++|++|+|+.+|.+|+|++|.+++|++++++
T Consensus 7 ~m~i~Vk~~g~~~~-i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~ 85 (90)
T 1v5t_A 7 GLPIIVKWGGQEYS-VTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES 85 (90)
T ss_dssp SCCEEEEETTEEEE-ECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred eEEEEEEECCEEEE-EEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCcc
Confidence 47899999999999 9 99999999999999999999999999999 9999999999999999999999999999866
Q ss_pred c
Q 011408 77 I 77 (486)
Q Consensus 77 ~ 77 (486)
.
T Consensus 86 ~ 86 (90)
T 1v5t_A 86 G 86 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 14
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.65 E-value=1.9e-16 Score=150.82 Aligned_cols=93 Identities=29% Similarity=0.487 Sum_probs=80.9
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE---ecCCcCCCCccccccCcCCCCeEEEeeccccc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM---VKGGLLKDDSDWSMLGVKQGQRLMMMGTADEI 77 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~---~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~~ 77 (486)
+|+|+|||+|++|+ |+|++++||.+||++|++++||||++|||| ++|++++|+.+|++++|++|.++||||++++.
T Consensus 5 ~i~i~Vk~~g~~~~-v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 5 EVVVIVKWSGKEYP-VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEEEETTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred eEEEEEEECCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 48899999999999 999999999999999999999999999999 78999999999999999999999999999763
Q ss_pred -c---CCCCCCCccccCCchh
Q 011408 78 -V---KAPEKGPVFVEDLPEE 94 (486)
Q Consensus 78 -~---~~p~~~~~~~~~~~~~ 94 (486)
. ..|.....|++|++..
T Consensus 84 i~~~~~~p~~~~~~~eD~~~~ 104 (320)
T 3shq_A 84 IEDACSLPDNIGEVVDDFDDA 104 (320)
T ss_dssp --------CCCSCCCCTTCCC
T ss_pred hcccccCCCcCCcccccCCCc
Confidence 3 4688888899999863
No 15
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=3.2e-15 Score=116.46 Aligned_cols=74 Identities=26% Similarity=0.505 Sum_probs=69.4
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecccc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
+++|+|+|+|++|. |+|++++||.+||++|++++|||+++|||+++|++| |+.+|.+|+|+++.+++|++++..
T Consensus 17 ~~~i~Vk~~g~~~~-i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~~ 90 (95)
T 1v86_A 17 LVDLKIIWNKTKHD-VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTIS 90 (95)
T ss_dssp CEEEEEEETTEEEE-EEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSCC
T ss_pred eEEEEEEECCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecccc
Confidence 48899999999999 999999999999999999999999999999999999 556999999999999999998744
No 16
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.4e-15 Score=114.18 Aligned_cols=74 Identities=27% Similarity=0.303 Sum_probs=68.6
Q ss_pred CeEEEEEe-CCeEEEEEEeC--CCCCHHHHHHHH-HHhhCCCCCceEEEecCCcCCCCccccccCc-CCCCeEEEeeccc
Q 011408 1 MLTVSVKW-QKEVFSNVEID--TSQTPYVFKCQL-YDLTGVPPERQKIMVKGGLLKDDSDWSMLGV-KQGQRLMMMGTAD 75 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~--~~~tv~~lk~~l-~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i-~~~~~i~l~g~~~ 75 (486)
|++|+||+ +|++++ |+|+ +++||.+||++| +++.|+|+++|||+|+|++|+|+.+|.+|+| .+|.+++++++++
T Consensus 1 mmqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CCEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred CEEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 89999999 678788 7655 999999999999 9999999999999999999999999999999 6999999999874
No 17
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=112.31 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=66.5
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe-cCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV-KGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~-~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|+.+.|+|+|++++ |+|++++||.+||++|++++||||++|||++ +++.++|+.+|.+|+|++|.+++|+-..
T Consensus 9 m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVD-VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEE-EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 57799999999999 9999999999999999999999999999994 6666999999999999999988885443
No 18
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.52 E-value=2.7e-14 Score=107.71 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=66.5
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
||+|.||. .|+++. |.+++++||.+||++|++..|+|+++|||++.|++|+|+.+|.+|+|++|.++.|
T Consensus 21 mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 21 MIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCCEEE-EEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEE
Confidence 78999997 689999 9999999999999999999999999999999999999999999999999999876
No 19
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.8e-14 Score=114.71 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=68.8
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecccc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
|++|.|++ +|+++. |+|++++||.+||++|++.+|+|+++|||+|+|+.|+|+.+|.+|+|++|..++++.....
T Consensus 1 mm~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 1 MVSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp --CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred CEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 78999997 899999 9999999999999999999999999999999999999999999999999999999887643
No 20
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=2.9e-14 Score=110.76 Aligned_cols=74 Identities=28% Similarity=0.480 Sum_probs=69.3
Q ss_pred CeEEEEEeCCeEEEEEEeCCC-----CCHHHHHHHHHHhhCCCCCceEEEecCCcCCC-CccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTS-----QTPYVFKCQLYDLTGVPPERQKIMVKGGLLKD-DSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~-----~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d-~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|++|.|+|+|++|+ |+|+++ +||.+||++|++.+|+|+++|||+++|+.|+| +.+|.+|+|++|..++|++.+
T Consensus 7 ~~~v~Vk~~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 7 GLTVTVTHSNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp SEEEEEECSSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred eEEEEEEECCEEEE-EEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 68999999999999 999996 99999999999999999999999999999998 568999999999999998876
Q ss_pred c
Q 011408 75 D 75 (486)
Q Consensus 75 ~ 75 (486)
.
T Consensus 86 ~ 86 (92)
T 1wxv_A 86 N 86 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 21
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=5.9e-14 Score=106.91 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=68.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+.+.++|+|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..+++++++
T Consensus 13 ~~~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 13 IKLTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEEETTEEEE-EEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEEECCEEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 5688899999999 99999999999999999999999999999999999999999999999999999998765
No 22
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.47 E-value=2.1e-13 Score=102.18 Aligned_cols=72 Identities=21% Similarity=0.438 Sum_probs=68.5
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|+++|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..+++++++
T Consensus 5 m~i~vk~~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKSGQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEECCEEEE-EEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6789999999999 99999999999999999999999999999999999999999999999999999997754
No 23
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=9.7e-14 Score=107.07 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred eEEEEEe-C----CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecccc
Q 011408 2 LTVSVKW-Q----KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 2 ~~~~v~~-~----~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
.+|.|+. + +++++ |+|++++||.+||++|++.+|+||++|||||.|++|+|+.+|.+|+|++|.+++++-.+..
T Consensus 16 ati~V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~ 94 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQS 94 (100)
T ss_dssp EEEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCC
T ss_pred EEEEEEecCCCCCCcEEE-EEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 4677765 3 57899 9999999999999999999999999999999999999999999999999999988776643
No 24
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.46 E-value=1.3e-13 Score=107.00 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=66.9
Q ss_pred CeEEEEEe-CCeEEEEE--EeCCCCCHHHHHHHH-HHhhCCCCCceEEEecCCcCCCCccccccCc-CCCCeEEEeecc
Q 011408 1 MLTVSVKW-QKEVFSNV--EIDTSQTPYVFKCQL-YDLTGVPPERQKIMVKGGLLKDDSDWSMLGV-KQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~--~~~~~~tv~~lk~~l-~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i-~~~~~i~l~g~~ 74 (486)
.++|+||+ +|++|+ + +|++++||.+||++| +++.|+|+++|||+|+|++|+|+.+|.+|+| ++|.+++++.++
T Consensus 19 ~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 19 AVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp CEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 37899999 677777 6 567999999999999 8899999999999999999999999999999 999999998875
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=9.2e-14 Score=107.21 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=66.6
Q ss_pred CeEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
||+|+||.. |+++. |+|++++||.+||++|++..|+|+++|||++.|++|+|+.+|.+|+|+++.++.|.
T Consensus 28 mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 689999985 89999 99999999999999999999999999999999999999999999999999988773
No 26
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.9e-14 Score=110.46 Aligned_cols=72 Identities=21% Similarity=0.438 Sum_probs=68.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|+|.|+|+|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++|+.++
T Consensus 29 i~I~Vk~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKSGQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEECSSCCCC-BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEECCEEEE-EEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 6799999999999 99999999999999999999999999999999999999999999999999999997653
No 27
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.43 E-value=4.9e-13 Score=100.68 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=66.8
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|.+++++-
T Consensus 5 m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 5 LSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 6899998 789999 999999999999999999999999999999999999999999999999999998854
No 28
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=7.8e-13 Score=103.12 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=68.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHh---hCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDL---TGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTAD 75 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~---~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~ 75 (486)
++|.|++ +|+++. ++|++++||.+||++|++. +|+|+++|||+++|+.|+|+.+|.+|+|++|.+++++..+.
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 4789998 589999 9999999999999999999 89999999999999999999999999999999999987663
No 29
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=3.6e-13 Score=102.11 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=66.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCc-CCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGL-LKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~-l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+. +|++++ ++|++++||.+||++|++.+|+|+++|||+++|+. |+|+.+|.+|+|++|..++++..
T Consensus 11 ~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 5688875 899999 99999999999999999999999999999999999 99999999999999999998753
No 30
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.42 E-value=4.4e-13 Score=102.91 Aligned_cols=71 Identities=17% Similarity=0.354 Sum_probs=66.5
Q ss_pred eEEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+ ++|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++++-.
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 478899 5899999 9999999999999999999999999999999999999999999999999999988644
No 31
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.41 E-value=9e-13 Score=100.78 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=68.3
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHh---hCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDL---TGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~---~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++ +|+++. ++|++++||.+||++|++. +|+|+++|||+++|+.|+|+.+|.+|+|++|..++++..+
T Consensus 5 ~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 5 AVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred eEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 57899999 589999 9999999999999999997 8999999999999999999999999999999999998765
No 32
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=103.13 Aligned_cols=68 Identities=22% Similarity=0.369 Sum_probs=64.9
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+| +|.+++|+
T Consensus 18 m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 18 LEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp EEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred EEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 6899999 689999 99999999999999999999999999999999999999999999999 89998885
No 33
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.9e-13 Score=104.26 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=67.0
Q ss_pred eEEEEE--eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccc
Q 011408 2 LTVSVK--WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTAD 75 (486)
Q Consensus 2 ~~~~v~--~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~ 75 (486)
++|+|+ -+|+.++ |+++++.||.+||+.+++.+++|+++|+|+|.|++|+|+.+|..|+|++|.+++|+-...
T Consensus 16 itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 16 ATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 667766 3579999 999999999999999999999999999999999999999999999999999999966653
No 34
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.41 E-value=6.7e-13 Score=102.73 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=66.9
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
.++|.|+. +|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++++.
T Consensus 17 ~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 17 SMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp SEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 37899994 889999 999999999999999999999999999999999999999999999999999998864
No 35
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.40 E-value=6.9e-13 Score=102.55 Aligned_cols=72 Identities=22% Similarity=0.349 Sum_probs=67.4
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++ +|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+| +|.+++|+...
T Consensus 5 ~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 5 SLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp EEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred EEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 47899999 689999 99999999999999999999999999999999999999999999999 89999887654
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.39 E-value=7.6e-13 Score=102.65 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=67.9
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC-ccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD-SDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~-~~l~~~~i~~~~~i~l~g~~ 74 (486)
.++|.|++.+.+++ |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+ .+|.+|+|++|.+++|+...
T Consensus 15 ~~~I~Vk~~~~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 15 KIHVTVKFPSKQFT-VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp CEEEEEECSSCEEE-EEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred CEEEEEEcCCcEEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 37899999766999 999999999999999999999999999999999999999 99999999999999986543
No 37
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=9.3e-13 Score=104.84 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=69.6
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeeccc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTAD 75 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~~ 75 (486)
+++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++|+....
T Consensus 23 ~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp SEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred eEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 37899998 789999 999999999999999999999999999999999999999999999999999999987653
No 38
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=102.60 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=68.8
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++.|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..++|+...
T Consensus 25 ~m~I~Vk~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 25 IMKVTVKTPKEKEE-FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp CEEEEEECSSCEEE-EEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred eEEEEEEeCCcEEE-EEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 47899999899999 99999999999999999999999999999999999999999999999999999987654
No 39
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=8.4e-13 Score=101.40 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=67.7
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++++...
T Consensus 5 m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 5 LSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred EEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899998 589999 99999999999999999999999999999999999999999999999999999987654
No 40
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1e-12 Score=103.03 Aligned_cols=71 Identities=23% Similarity=0.404 Sum_probs=66.9
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|+. +|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..++++.
T Consensus 22 ~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 22 PMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred eEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 36899995 889999 999999999999999999999999999999999999999999999999999998854
No 41
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.2e-12 Score=103.51 Aligned_cols=73 Identities=22% Similarity=0.358 Sum_probs=66.7
Q ss_pred CeEEEEEe--CC---eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC-ccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKW--QK---EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD-SDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~--~~---~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~-~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++ ++ +++. |+|++++||.+||++|++++|+|+++|||+++|+.|+|+ .+|.+|+|++|..++|+...
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred eEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 46777877 54 8999 999999999999999999999999999999999999988 68999999999999997765
No 42
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.37 E-value=8.4e-13 Score=102.40 Aligned_cols=70 Identities=24% Similarity=0.413 Sum_probs=65.9
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|++ |+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|+++.+++++-
T Consensus 19 ~m~I~Vk~-g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 19 SMQLFVRA-QELHT-FEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp -CEEEEES-SSEEE-EECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred cEEEEEEC-CCEEE-EEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 36899999 89999 999999999999999999999999999999999999999999999999999998854
No 43
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=105.97 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=68.9
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++.|+++. |+|++++||.+||++|++.+|+|+++|||+|+|++|+|+.+|.+|+|++|.+++|+...
T Consensus 32 ~m~I~Vk~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 32 IIKVTVKTPKEKEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CEEEEEECSSCEEE-EEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred cEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 47899999899999 99999999999999999999999999999999999999999999999999999997765
No 44
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=98.10 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=67.0
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+++|.|+. +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++..
T Consensus 7 ~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 7 GMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp SEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred cEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 47888985 789999 9999999999999999999999999999999999999999999999999999988653
No 45
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.36 E-value=2.1e-12 Score=99.40 Aligned_cols=71 Identities=17% Similarity=0.332 Sum_probs=67.0
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|+. +|+++. |+|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|+++..++++-
T Consensus 12 ~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 12 SMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred cEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 37899996 789999 999999999999999999999999999999999999999999999999999998853
No 46
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=1.3e-12 Score=101.44 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=65.2
Q ss_pred CeEEEEEeC-Ce--EEEEEEeCCCCCHHHHHHHHHHhh--CCCCCceEEEecCCcCCCCcccccc--CcCCCCeEEEeec
Q 011408 1 MLTVSVKWQ-KE--VFSNVEIDTSQTPYVFKCQLYDLT--GVPPERQKIMVKGGLLKDDSDWSML--GVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~~~-~~--~~~~~~~~~~~tv~~lk~~l~~~~--~vp~~~qkl~~~~~~l~d~~~l~~~--~i~~~~~i~l~g~ 73 (486)
+++|+|++. |+ ++. |++++++||.+||++|++.+ ++|+++|||+|+|++|+|+.+|.+| +|+++.+++|+..
T Consensus 7 ~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 7 GVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 478999995 45 577 77889999999999999999 9999999999999999999999999 9999999998654
No 47
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.35 E-value=2.9e-12 Score=97.91 Aligned_cols=71 Identities=23% Similarity=0.409 Sum_probs=67.2
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|++ +|+++. |+|++++||.+||++|++.+++|+++|+|+++|+.|+|+.+|.+|+|+++..++++-
T Consensus 3 ~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 57899998 679999 999999999999999999999999999999999999999999999999999998854
No 48
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=1.1e-12 Score=102.62 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=68.7
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++.|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++|+...
T Consensus 17 ~m~i~Vk~~g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 17 IIRVSVKTPQDCHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp EEEEEEECSSSEEE-EEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred cEEEEEEECCeEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 47899999999999 99999999999999999999999999999999999999999999999999999886543
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2e-12 Score=101.49 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=67.5
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|.|++.+.++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++|+...
T Consensus 22 ~m~I~Vk~~~g~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 22 LIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp EEEEEEECSSCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEEEcCCCcEE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 47899999665688 99999999999999999999999999999999999999999999999999999987654
No 50
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.34 E-value=3.4e-12 Score=95.28 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=66.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++-
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 4789998 689999 999999999999999999999999999999999999999999999999999998854
No 51
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.3e-12 Score=98.49 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=66.9
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+++|.|++ +|+++. ++|++++||.+||++|++.+++|+++|+|+++|+.|+|+.+|.+|+|+++.+++++-.
T Consensus 3 ~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 3 HMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp -CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 47899996 789999 9999999999999999999999999999999999999999999999999999988643
No 52
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=3.3e-12 Score=98.03 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=67.7
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+++|.|++ .|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|+++.+++++..
T Consensus 7 ~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 7 GIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp SEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred CEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 47899998 689999 9999999999999999999999999999999999999999999999999999988654
No 53
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=2.9e-12 Score=102.04 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=67.9
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
|++|.|++.+.++. |+|+.++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..++|+...
T Consensus 17 ~m~I~Vk~~~g~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 17 LIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEEECSSCEEE-EEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred eEEEEEEeCCCcEE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 47899999665688 99999999999999999999999999999999999999999999999999999997765
No 54
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=4.2e-12 Score=95.25 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=65.7
Q ss_pred CeEEEEEe-CCeE-EEEEE-eCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEV-FSNVE-IDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~-~~~~~-~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
.++|.|++ +|++ +. ++ |++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++-
T Consensus 2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 36899998 5777 49 99 9999999999999999999999999999999999999999999999999998864
No 55
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.32 E-value=4.9e-12 Score=101.39 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=67.1
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|+. +|+++. |.|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..++|+.
T Consensus 35 ~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 35 AMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp CEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred cEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 47899995 789999 999999999999999999999999999999999999999999999999999998864
No 56
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.32 E-value=6.8e-12 Score=98.48 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=67.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..+.++...
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 4789998 689999 99999999999999999999999999999999999999999999999999999986653
No 57
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=6e-12 Score=96.99 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=66.8
Q ss_pred CeEEEEEe-CC-eEEEEE-EeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 1 MLTVSVKW-QK-EVFSNV-EIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~~-~~-~~~~~~-~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+++|.|++ .| +++. | +|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|+++..++|+-.
T Consensus 7 ~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 57899998 47 7999 9 599999999999999999999999999999999999999999999999999998654
No 58
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.31 E-value=5.7e-12 Score=98.66 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=67.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|++ +|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++++..
T Consensus 2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 5789997 689999 9999999999999999999999999999999999999999999999999999998654
No 59
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.31 E-value=6.8e-12 Score=93.61 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=65.9
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|++++|..++++.
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 4789998 689999 999999999999999999999999999999999999999999999999999998854
No 60
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=7.8e-12 Score=95.91 Aligned_cols=70 Identities=24% Similarity=0.450 Sum_probs=64.2
Q ss_pred EEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 3 TVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 3 ~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+|.|+ ++|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|..++++..
T Consensus 11 ~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 11 QLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp EEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 45554 6899999 9999999999999999999999999999999999999999999999999999988643
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.26 E-value=8.9e-12 Score=98.94 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=65.4
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcC-------CCCeEEEeec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVK-------QGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~-------~~~~i~l~g~ 73 (486)
+.|.|++++.++. ++|.+++||.+||++|+++.|||+++|||++.|++|+|+.+|.+|+|. .+.+++|+-.
T Consensus 3 mfl~ir~~ktti~-lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEecCCEEEE-EEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 5678888888899 999999999999999999999999999999999999999999999999 6888887555
No 62
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.25 E-value=2.5e-11 Score=97.39 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=67.1
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+++|++|.+++++.
T Consensus 35 ~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 35 AMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp CEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred eEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899998 689999 999999999999999999999999999999999999999999999999999998864
No 63
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.25 E-value=1.8e-11 Score=98.26 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=66.4
Q ss_pred CeEEEEEe----CCeEEEEEEeCC-CCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW----QKEVFSNVEIDT-SQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~----~~~~~~~~~~~~-~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
.|+|.|++ +|+++. ++|++ ++||.+||++|++.+|+|+++|+|+++|++|+|+.+|.+|+|++|..++|+-
T Consensus 27 ~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 27 PATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred cEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 37889998 579999 99998 9999999999999999999999999999999999999999999999998864
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.25 E-value=2.6e-11 Score=95.68 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=65.9
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCC-------CCeEEEeecc
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQ-------GQRLMMMGTA 74 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~-------~~~i~l~g~~ 74 (486)
=|.|++++.++. +++.+++||.+||++|++..|+||++|||++.|++|+|+.+|.+|+|.. +.+++|+-..
T Consensus 4 Fl~Ikr~ktTI~-ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 4 FLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred EEEEecCCEEEE-EEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 377888899999 9999999999999999999999999999999999999999999999999 9998886443
No 65
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=2.4e-11 Score=94.55 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=65.8
Q ss_pred CeEEEEEeCCe--EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC---C----cCCCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQKE--VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG---G----LLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~~~--~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~---~----~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|+|.|++++. .++ ++|++++||.+||++|+.++|+|+++|||++.| + +++|+.+|.+|+|.+|..++++
T Consensus 7 ~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 48899999876 789 999999999999999999999999999999876 3 3588899999999999999997
Q ss_pred ecc
Q 011408 72 GTA 74 (486)
Q Consensus 72 g~~ 74 (486)
...
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 654
No 66
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.24 E-value=2.1e-11 Score=92.35 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=64.6
Q ss_pred CeEEEEEeC--C-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec-------CCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQ--K-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK-------GGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~--~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~-------~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
++.|.|.|+ + ..++ +.+++++||.+||++|+.++|+||++|||+++ |.+++|+.+|.+|+|.+|..++|
T Consensus 2 ~V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPE-KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEEETTCSCCEEE-EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 367888874 3 5678 99999999999999999999999999999964 67899999999999999999999
Q ss_pred eecc
Q 011408 71 MGTA 74 (486)
Q Consensus 71 ~g~~ 74 (486)
+...
T Consensus 81 vd~~ 84 (86)
T 4b6w_A 81 VDLQ 84 (86)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7654
No 67
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1.4e-11 Score=98.05 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=65.4
Q ss_pred eEEEEEeCC----eEEEEEEeCC---------CCCHHHHHHHHHHhh--CCCCCc-eEEEecCCcCCCCccccccCcCCC
Q 011408 2 LTVSVKWQK----EVFSNVEIDT---------SQTPYVFKCQLYDLT--GVPPER-QKIMVKGGLLKDDSDWSMLGVKQG 65 (486)
Q Consensus 2 ~~~~v~~~~----~~~~~~~~~~---------~~tv~~lk~~l~~~~--~vp~~~-qkl~~~~~~l~d~~~l~~~~i~~~ 65 (486)
++|.|||.+ +++. |+|+. ++||.+||++|++.+ |+|+++ |||+|+|+.|+|+.+|.+|+|++|
T Consensus 13 ~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g 91 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG 91 (107)
T ss_dssp CCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred eEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence 679999965 4999 99554 599999999999999 999999 999999999999999999999999
Q ss_pred CeEEEeecc
Q 011408 66 QRLMMMGTA 74 (486)
Q Consensus 66 ~~i~l~g~~ 74 (486)
..++|+...
T Consensus 92 ~~i~lv~~~ 100 (107)
T 1x1m_A 92 STVHVLRKS 100 (107)
T ss_dssp CEEEEEESS
T ss_pred CEEEEEeCC
Confidence 999997765
No 68
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=96.67 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=61.4
Q ss_pred eEEEEEeC-Ce--EEEEEEeCCCCCHHHHHHHHHHh-hCCCC-CceEEEecCCcCCCCcccccc--CcCCCCeEEEe
Q 011408 2 LTVSVKWQ-KE--VFSNVEIDTSQTPYVFKCQLYDL-TGVPP-ERQKIMVKGGLLKDDSDWSML--GVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~~-~~--~~~~~~~~~~~tv~~lk~~l~~~-~~vp~-~~qkl~~~~~~l~d~~~l~~~--~i~~~~~i~l~ 71 (486)
|+|+||+. |+ +++ |+|++++||.+||++|++. .|+|| ++|||+|+|++|+|+.+|.+| +|+++.+++|+
T Consensus 24 m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999984 55 578 8999999999999999985 57765 999999999999999999999 99999998874
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.24 E-value=2.5e-11 Score=104.52 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=67.9
Q ss_pred eEEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-e-cCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-V-KGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~-~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+ ++|+++. ++|++++||.+||++|++.+|+|+++|||+ + .|+.|+|+.+|.+|+|++|.+++++..
T Consensus 3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 789999 6899999 999999999999999999999999999999 9 699999999999999999999999876
No 70
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.22 E-value=3.3e-11 Score=96.93 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=66.8
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|+. +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++|+...
T Consensus 10 ~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 10 FQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred EEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 4677775 789999 99999999999999999999999999999999999999999999999999999987654
No 71
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.22 E-value=3.4e-11 Score=105.03 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=68.3
Q ss_pred CeEEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 1 MLTVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 1 ~~~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+++|.|+ ++|+++. |+|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|+++.+++|+..
T Consensus 20 ~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 20 HMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 4789999 7999999 9999999999999999999999999999999999999999999999999999998754
No 72
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.21 E-value=2.8e-11 Score=93.44 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=62.7
Q ss_pred CeEEEEEeCC---eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC--C----cCCCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQK---EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG--G----LLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~~---~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~--~----~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|+|.|+... ..++ +.|++++||.+||++|++.+||||++|||++++ + +++|+.+|.+|+|.+|.+++|+
T Consensus 15 ~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred eEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 3788899853 4899 999999999999999999999999999999873 3 3588899999999999999986
Q ss_pred e
Q 011408 72 G 72 (486)
Q Consensus 72 g 72 (486)
.
T Consensus 94 D 94 (95)
T 2kjr_A 94 D 94 (95)
T ss_dssp E
T ss_pred C
Confidence 4
No 73
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.84 E-value=1.3e-12 Score=97.46 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=65.4
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|++ +|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++.
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 4688998 689999 999999999999999999999999999999999999999999999999999988754
No 74
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.20 E-value=3.4e-11 Score=90.47 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=66.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
++|.|+. .|+++. ++|++++||.+||+++++..|+|+++|+|+|.|..|+|+.++.+|+|.+|..+.++-
T Consensus 4 m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 4 IKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 6788996 689999 999999999999999999999999999999999999999999999999999998854
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.18 E-value=6e-11 Score=95.79 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=64.9
Q ss_pred eEEEEEe-----------CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-----------QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-----------~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|+|.|+. +|+++. |+|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~l 104 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHL 104 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEE
Confidence 6777776 368999 9999999999999999999999999999999999999999999999999999988
Q ss_pred ee
Q 011408 71 MG 72 (486)
Q Consensus 71 ~g 72 (486)
+-
T Consensus 105 v~ 106 (115)
T 1we7_A 105 AL 106 (115)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 76
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=9.1e-11 Score=91.41 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=65.4
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCC-ccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDD-SDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~-~~l~~~~i~~~~~i~l~g~~ 74 (486)
+|+|.|++ +|+.+. ++|++++||.+||++|++.+ +++|||+++|+.|+|+ .+|.+|+|++|..++|+...
T Consensus 7 ~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 7 GINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp SEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred eEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 47899987 689999 99999999999999999988 9999999999999999 99999999999999998765
No 77
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.17 E-value=5.1e-11 Score=93.03 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=66.4
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+. .|+++. +.|.+++||.+||+++++..|+|+++|||+|.|+.|+|+.++.+|+|.++..+.++-
T Consensus 22 m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 22 IKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp EEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 7899997 689999 999999999999999999999999999999999999999999999999999998864
No 78
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.17 E-value=8.4e-11 Score=91.00 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=63.9
Q ss_pred CeEEEEEeCC---eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCC---c----CCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQK---EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGG---L----LKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~~---~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~---~----l~d~~~l~~~~i~~~~~i~l 70 (486)
.++|.|+++. ..++ +.|++++||.+||++|++.+||||++|||++.|+ . ++|+.+|.+|+|.+|.++++
T Consensus 14 ~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 14 SVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred eEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 3678899853 3789 9999999999999999999999999999998772 2 58889999999999999999
Q ss_pred eecc
Q 011408 71 MGTA 74 (486)
Q Consensus 71 ~g~~ 74 (486)
+.+.
T Consensus 93 vd~~ 96 (97)
T 2kj6_A 93 IDLD 96 (97)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7653
No 79
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.16 E-value=6.6e-11 Score=103.07 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=67.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+. +|+++. |+|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+++|+++.+++|+..
T Consensus 106 MqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred eeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 6799998 689999 9999999999999999999999999999999999999999999999999999998653
No 80
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.16 E-value=9.2e-11 Score=101.25 Aligned_cols=71 Identities=23% Similarity=0.414 Sum_probs=66.8
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+. +|+++. ++|++++||.+||++|++.+|+|+++|||+++|+.|+|+.+|.+|+|++|.+++|+..
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 4788888 689999 9999999999999999999999999999999999999999999999999999998654
No 81
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=2e-11 Score=95.46 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=64.8
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC---------------ceEEEecCCcCC-CCccccccCcC
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE---------------RQKIMVKGGLLK-DDSDWSMLGVK 63 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~---------------~qkl~~~~~~l~-d~~~l~~~~i~ 63 (486)
+++|+|+- .|++++ |+|.+++||.+||++|++.+++|++ .|+|+|.|++|+ |+.+|.+|+|+
T Consensus 7 ~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp SEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred cEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 37899975 789999 9999999999999999999999984 469999999997 45899999999
Q ss_pred CCCeEEEeecc
Q 011408 64 QGQRLMMMGTA 74 (486)
Q Consensus 64 ~~~~i~l~g~~ 74 (486)
+|.+++++-..
T Consensus 86 ~g~~l~lv~~l 96 (105)
T 1v2y_A 86 NRDEVSFIKKL 96 (105)
T ss_dssp SSEEEEEEECS
T ss_pred CCCEEEEEehh
Confidence 99999986553
No 82
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.13 E-value=1.2e-10 Score=94.86 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=65.5
Q ss_pred CeEEEEEeCCe--EEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC---C----cCCCCccccccCcCCCCeEEEe
Q 011408 1 MLTVSVKWQKE--VFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG---G----LLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 1 ~~~~~v~~~~~--~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~---~----~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|+|.|++++. .++ +.|++++||.+||++|+..+||||++|||++.| + +++|+.+|.+|+|.+|..++|+
T Consensus 6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 37899999876 689 999999999999999999999999999999876 3 2588899999999999999997
Q ss_pred ecc
Q 011408 72 GTA 74 (486)
Q Consensus 72 g~~ 74 (486)
...
T Consensus 85 d~~ 87 (122)
T 1t0y_A 85 DVT 87 (122)
T ss_dssp ECT
T ss_pred eCC
Confidence 754
No 83
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.13 E-value=2.6e-10 Score=90.94 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=61.8
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHH------hhCC--CCCceEEEecCCcCCCCccccccCcCCCCe--EE
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYD------LTGV--PPERQKIMVKGGLLKDDSDWSMLGVKQGQR--LM 69 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~------~~~v--p~~~qkl~~~~~~l~d~~~l~~~~i~~~~~--i~ 69 (486)
+|+|+||. .|++++ ++|++++||.+||++|++ ..++ |+++|||||.|++|+|+.+|.+|+|..+.. ++
T Consensus 16 ~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 16 MINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred eEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 37889986 789999 999999999999999999 5675 699999999999999999999999987754 44
Q ss_pred Ee
Q 011408 70 MM 71 (486)
Q Consensus 70 l~ 71 (486)
|+
T Consensus 95 Lv 96 (116)
T 1wgh_A 95 LV 96 (116)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 84
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.2e-10 Score=88.75 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=60.9
Q ss_pred CeEEEEEeC-CeE--EEEE-EeCCCCCHHHHHHHHHHh-hCCCCCceEEEe--cCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQ-KEV--FSNV-EIDTSQTPYVFKCQLYDL-TGVPPERQKIMV--KGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~-~~~--~~~~-~~~~~~tv~~lk~~l~~~-~~vp~~~qkl~~--~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|++|+|+.. |++ +. | +|++++||.+||++|++. .|+||++|||++ +|++|+|+.+|.+|+|+++.++++
T Consensus 10 ~M~I~Vk~~~g~~~~~~-l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCF-LDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEE-EEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeE-EeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 688999974 444 36 8 999999999999999995 899999999995 588999999999999999998776
No 85
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=94.03 Aligned_cols=71 Identities=11% Similarity=0.250 Sum_probs=62.7
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHH------hhCC--CCCceEEEecCCcCCCCccccccCcCCCCe--EE
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYD------LTGV--PPERQKIMVKGGLLKDDSDWSMLGVKQGQR--LM 69 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~------~~~v--p~~~qkl~~~~~~l~d~~~l~~~~i~~~~~--i~ 69 (486)
+|.|+||. .|++++ ++|++++||.+||++|++ ..|+ |+++|||||.|++|+|+.+|.+|+|..+.. ++
T Consensus 17 ~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 17 MINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp CEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred eEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 47888886 689999 999999999999999999 7788 499999999999999999999999998874 44
Q ss_pred Eee
Q 011408 70 MMG 72 (486)
Q Consensus 70 l~g 72 (486)
|+-
T Consensus 96 lv~ 98 (125)
T 2gow_A 96 LVA 98 (125)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 86
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.11 E-value=3.2e-10 Score=88.16 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=60.4
Q ss_pred EEEEEeC---CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCc-CCCCeEEEe
Q 011408 3 TVSVKWQ---KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGV-KQGQRLMMM 71 (486)
Q Consensus 3 ~~~v~~~---~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i-~~~~~i~l~ 71 (486)
.|.|+-- +.+++ ++|++++||.+||++|++.+|+||++||+++.+++++|+.+|.+|+| .+|..++|+
T Consensus 26 ~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~ 97 (105)
T 4dbg_A 26 WVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLY 97 (105)
T ss_dssp EEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEE
T ss_pred EEEEEccCCCCceEE-EEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEE
Confidence 4566652 37999 99999999999999999999999999998898889999999999999 599988874
No 87
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.10 E-value=2.2e-10 Score=98.54 Aligned_cols=71 Identities=23% Similarity=0.215 Sum_probs=66.8
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|+. .|+++. ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|.+++++..
T Consensus 82 m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 82 LSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 5788888 589999 9999999999999999999999999999999999999999999999999999998643
No 88
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.09 E-value=8.9e-12 Score=102.73 Aligned_cols=71 Identities=23% Similarity=0.414 Sum_probs=0.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|++ +|++++ |+|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|.+|.+++|+..
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 4688888 689999 9999999999999999999999999999999999999999999999999999888654
No 89
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.06 E-value=4.1e-10 Score=96.13 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=67.3
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
++|.|++ +|++++ ++|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++...
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 4688986 789999 99999999999999999999999999999999999999999999999999999997653
No 90
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.05 E-value=1.8e-11 Score=103.00 Aligned_cols=71 Identities=23% Similarity=0.414 Sum_probs=0.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
++|.|++ +|+++. |+|++++||.+||++|++.+|+|+++|+|++.|..|+|+.+|.+++|.+|.+++|+..
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr 72 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence 4688888 689999 9999999999999999999999999999999999999999999999999999888544
No 91
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.02 E-value=6.3e-10 Score=104.12 Aligned_cols=71 Identities=23% Similarity=0.404 Sum_probs=67.1
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+++|.|++ +|+++. |+|++++||.+||++|++++|+|+++|||+++|+.|+|+.+|.+++|+++.+++|+.
T Consensus 233 ~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 233 SMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 47899999 689999 999999999999999999999999999999999999999999999999999998864
No 92
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.02 E-value=4.7e-10 Score=108.21 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=66.8
Q ss_pred CeEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHH---hhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 1 MLTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYD---LTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~---~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+++|+||+ .|++|. |+|++++||.+||++|++ ++|||+++|||+|+|++|+|+.+|.+|+|++|.+++++..+
T Consensus 7 ~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 7 AVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred eEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 47899999 489999 999999999999999999 67899999999999999999999999999999998555554
No 93
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.99 E-value=1.1e-09 Score=87.96 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=57.1
Q ss_pred eEEEEEe-CCeEE-EEEEeCCCCCHHHHHHHH-----HHhhCCCC--CceEEEecCCcCCCCccccccCcCCCC
Q 011408 2 LTVSVKW-QKEVF-SNVEIDTSQTPYVFKCQL-----YDLTGVPP--ERQKIMVKGGLLKDDSDWSMLGVKQGQ 66 (486)
Q Consensus 2 ~~~~v~~-~~~~~-~~~~~~~~~tv~~lk~~l-----~~~~~vp~--~~qkl~~~~~~l~d~~~l~~~~i~~~~ 66 (486)
+.|+|+. .|+++ . +++++++||.++|++| .+..|+|+ ++|||||.|++|+|+.+|++|+|..|.
T Consensus 17 ~~i~~kt~~G~~i~~-l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 17 LEIKFRLTDGSDIGP-KAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSN 89 (126)
T ss_dssp EEEEEEETTSCEEEE-EEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTS
T ss_pred EEEEEEECCCCEEEe-eecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCC
Confidence 6788876 67677 7 9999999999999999 45678987 899999999999999999999999984
No 94
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.99 E-value=1.4e-09 Score=92.77 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=66.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
+.|.|+. .|+++. +++++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|..++++..
T Consensus 77 ~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 77 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4678885 789999 9999999999999999999999999999999999999999999999999999998643
No 95
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=95.35 Aligned_cols=70 Identities=23% Similarity=0.430 Sum_probs=65.2
Q ss_pred eEEEEE-eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVK-WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~-~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
+.|.|+ ++|+++. +.|++++||.+||++|++.+|+|+++|+|+++|+.|+|+.+|.+|+|++|.+++|+.
T Consensus 97 ~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 97 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp EEEEEEESSCCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred ccceeecccCccee-EEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 456777 5889999 999999999999999999999999999999999999999999999999999999854
No 96
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.98 E-value=1.3e-09 Score=82.91 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=62.3
Q ss_pred eEEEEEeCCeEEEEEE-eCCCCCHHHHHHHHHHhhCCCCCceEEEec--CCcCC---CCccccccCcCCCCeEEEeecc
Q 011408 2 LTVSVKWQKEVFSNVE-IDTSQTPYVFKCQLYDLTGVPPERQKIMVK--GGLLK---DDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~-~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~--~~~l~---d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
+.|.|+|.+..+. |. +++++||.+||++|++.+|||+++|+|++. ++.++ |+.+|.+++|++|..+++....
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 4689999776778 88 999999999999999999999999999964 46663 6789999999999999986553
No 97
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.90 E-value=4.7e-09 Score=83.30 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=62.6
Q ss_pred eEEEEEeCCeEEEEEEeC-CCCCHHHHHHHHHHhhCCCCCceEEEecCC-----------c----CCCCccccccCcCCC
Q 011408 2 LTVSVKWQKEVFSNVEID-TSQTPYVFKCQLYDLTGVPPERQKIMVKGG-----------L----LKDDSDWSMLGVKQG 65 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~-~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~-----------~----l~d~~~l~~~~i~~~ 65 (486)
+.|.|+....++. |+|+ +++||.+||++|++.+|||+++|+|++.++ . ++|+.+|.+|+|++|
T Consensus 8 M~irvrs~~G~~~-v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLER-VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEEE-EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCEE-EEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 5689998654568 9999 999999999999999999999999987665 3 588899999999999
Q ss_pred CeEEEeecc
Q 011408 66 QRLMMMGTA 74 (486)
Q Consensus 66 ~~i~l~g~~ 74 (486)
..++|.-..
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999986554
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.68 E-value=6e-08 Score=75.51 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=61.6
Q ss_pred CeEEEEEe----CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCC--------cCCCCccccccCcCCCCeE
Q 011408 1 MLTVSVKW----QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGG--------LLKDDSDWSMLGVKQGQRL 68 (486)
Q Consensus 1 ~~~~~v~~----~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~--------~l~d~~~l~~~~i~~~~~i 68 (486)
|++|.|++ +|+.++ +.+..++||.+||.+|+.+||+|+..|||.+.+. +.+|+.+|..|++.+|..+
T Consensus 9 ~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred cEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 47788885 468889 9999999999999999999999999999997521 2366689999999999999
Q ss_pred EEeec
Q 011408 69 MMMGT 73 (486)
Q Consensus 69 ~l~g~ 73 (486)
++...
T Consensus 88 ~V~d~ 92 (97)
T 1wjn_A 88 LVRWS 92 (97)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 98654
No 99
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.61 E-value=4.5e-09 Score=90.72 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
++|.|+. .|++++ |+|++++||.+||++|++.+|||+++|+|+|.|.+|+|+.+|. ++.+++|+
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLS 65 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEE
Confidence 4678886 689999 9999999999999999999999999999999999999998887 67777764
No 100
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.44 E-value=8.1e-07 Score=68.19 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=66.0
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+- .|+++. +.|.+++++..|++..++..|+|++.+|++|.|..|.++.|..++++.+|..|.++-.
T Consensus 8 i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 8 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEE-EEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 6788886 678899 9999999999999999999999999999999999999999999999999999888554
No 101
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.42 E-value=1.3e-06 Score=63.63 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=64.6
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+|+|+. .|+... +.|.+++++..|++..++..|+|+..+|++|.|..+.++.|..++++.+|..|.++
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7889986 678899 99999999999999999999999999999999999999999999999999988764
No 102
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.38 E-value=1.5e-06 Score=64.42 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=64.8
Q ss_pred eEEEEEe-CC-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QK-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+. .| +.+. +.|.+++++..|++..++..|++++.+|++|.|..|.++.|..++++.+|..|.++|
T Consensus 8 i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 7788887 56 4889 999999999999999999999999999999999999999999999999999998764
No 103
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.31 E-value=2.7e-06 Score=64.75 Aligned_cols=71 Identities=8% Similarity=0.134 Sum_probs=65.7
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+- .|+.+. +.|.+++++..|++..++..|+|+..+|++|.|..|.++.|..++++.+|..|-++-.
T Consensus 6 i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 6 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 6788886 678899 9999999999999999999999999999999999999999999999999999887543
No 104
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.19 E-value=6.5e-06 Score=64.22 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=65.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+. .|+.+. +.|.+++++..|+...++..|+|+..+|++|.|..|.++.|..++++.+|..|.++-
T Consensus 25 I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 25 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp EEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred EEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 6788886 578889 999999999999999999999999999999999999999999999999999988753
No 105
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.17 E-value=7.1e-06 Score=62.82 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=64.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+. .|+.+. +.|.+++++..|+...++..|+|++.+|++|.|..|.++.|..++++.+|..|.++-
T Consensus 18 i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 18 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp EEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 6788886 578889 999999999999999999999999999999999999999999999999999887753
No 106
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.17 E-value=6.2e-06 Score=64.33 Aligned_cols=70 Identities=9% Similarity=0.051 Sum_probs=64.8
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+..|+... +.|.+++++..|++..++..|+++..+|++|.|..|.++.|..++++.+|..|-++-
T Consensus 32 I~IkV~~~g~~i~-fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 32 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp EEEEEECSSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred EEEEEecCCcEEE-EEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 6788877778889 999999999999999999999999999999999999999999999999999887743
No 107
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.08 E-value=7.4e-06 Score=64.43 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=65.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+. .|+.+. +.|.+++++..|++..++..|+|++.+|++|.|..|.++.|..++++.+|..|-++-.
T Consensus 27 I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 27 VAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp EEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7888887 578889 9999999999999999999999999999999999999999999999999998887543
No 108
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.77 E-value=3.4e-05 Score=57.09 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=57.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEec----CCc-CCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVK----GGL-LKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~----~~~-l~d~~~l~~~~i~~~~~i~l 70 (486)
+.|.|+....++. |++++++|+.+|+++|++.++++++.|.+.+. +.+ +.++.++..+||+.|..+.+
T Consensus 5 m~lRvrs~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 4578888888999 99999999999999999999999999988732 222 33667899999999998876
No 109
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.69 E-value=0.00012 Score=55.11 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=39.1
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcC
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLL 51 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l 51 (486)
++..+. +.|.++.|+..||++|++.||||++.|+|++.|+.+
T Consensus 22 ~a~~h~-v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l 63 (94)
T 4efo_A 22 QMTAHK-IYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 63 (94)
T ss_dssp TTEEEE-EEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred cceEEE-EEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCcc
Confidence 679999 999999999999999999999999999999988543
No 110
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.62 E-value=0.00029 Score=55.40 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=64.0
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+-. |.... +.|.+++++..|+...++..|+++..+|++|.|..|.++.|..++++.+|..|-++-
T Consensus 41 I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 41 IKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp EEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred EEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 67888874 67788 999999999999999999999999999999999999999999999999999987753
No 111
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00023 Score=61.95 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=66.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+..|+... +.|.+.+++..|++..++..|+|+..+|++|.|..+.++.|..++++.+|..|-++-.
T Consensus 30 I~LkV~~~g~~v~-fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 30 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEECSSCEEE-EEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEecCCCEEE-EEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 7888887889999 9999999999999999999999999999999999999999999999999998877543
No 112
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00028 Score=60.05 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=64.9
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+|+|+-.|.... +.|.+++++..|++..++..|+++..++++|.|..+.++.|..++++.+|..|-++
T Consensus 58 InLKVk~dG~eV~-FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~ 126 (207)
T 3tix_A 58 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAH 126 (207)
T ss_dssp EEEEEECSSCEEE-EEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEEC
T ss_pred EEEEEecCCCEEE-EEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 6788887889999 99999999999999999999999999999999999999999999999999998774
No 113
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.20 E-value=0.0046 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=28.0
Q ss_pred eEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecC
Q 011408 420 VAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQR 458 (486)
Q Consensus 420 ~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~ 458 (486)
.+-++..| +.++|||+.+.. ..+ +.+|-..+.+++
T Consensus 161 ~~~~vF~G-~~~~GHY~~~~~-~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 161 VMHAVYTG-TTQNGHYMVDDI-EHG--YCVDGMGIKPLK 195 (211)
T ss_dssp SEEEEEES-CTTTCEEEEEET-TTT--EEEETTEEECCC
T ss_pred eeEEEEEc-CCCCceEEEEec-ccc--eEEeCCceeEcc
Confidence 35566699 699999999986 444 899999998886
No 114
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.19 E-value=0.0014 Score=58.50 Aligned_cols=78 Identities=18% Similarity=0.187 Sum_probs=62.0
Q ss_pred EEEEEeCCe---EEEEEEeCCCCCHHHHHHHHHHhhCCCCC-ceEEEe-c----CCcCCC-CccccccCcCCCCeEEEee
Q 011408 3 TVSVKWQKE---VFSNVEIDTSQTPYVFKCQLYDLTGVPPE-RQKIMV-K----GGLLKD-DSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 3 ~~~v~~~~~---~~~~~~~~~~~tv~~lk~~l~~~~~vp~~-~qkl~~-~----~~~l~d-~~~l~~~~i~~~~~i~l~g 72 (486)
.+.+...++ .++ +.++..+|+.+|++.++++++||++ ..|||. . ...|.| +.++.+++|.+++.+.+ +
T Consensus 129 ~l~l~~~~~~~~~~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~ill-E 206 (217)
T 4a3p_A 129 ELKLCENGNMNNVVT-RRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVI-E 206 (217)
T ss_dssp EEEEEETTEEEEEEE-EEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEE-E
T ss_pred EEEEEecCCCCcceE-EEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEE-E
Confidence 455665553 366 8899999999999999999999998 699992 1 235555 57999999999999987 8
Q ss_pred ccccccCCCC
Q 011408 73 TADEIVKAPE 82 (486)
Q Consensus 73 ~~~~~~~~p~ 82 (486)
.+++.++||.
T Consensus 207 ~r~~dg~WP~ 216 (217)
T 4a3p_A 207 QKNEDGTWPR 216 (217)
T ss_dssp ECCCC-CCCC
T ss_pred EecCCCCCCC
Confidence 8888888985
No 115
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.15 E-value=0.0025 Score=57.50 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=63.1
Q ss_pred EEEEEeCCeE---EEEEEeCCCCCHHHHHHHHHHhhCCCCC-ceEEEe-c----CCcCCC-CccccccCcCCCCeEEEee
Q 011408 3 TVSVKWQKEV---FSNVEIDTSQTPYVFKCQLYDLTGVPPE-RQKIMV-K----GGLLKD-DSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 3 ~~~v~~~~~~---~~~~~~~~~~tv~~lk~~l~~~~~vp~~-~qkl~~-~----~~~l~d-~~~l~~~~i~~~~~i~l~g 72 (486)
.+.+...++. ++ +.++..+|+.+|++.++.+++||++ .-|||. . ...|.| +.++.++++.+++.+.+ +
T Consensus 141 ~l~l~~~~~~~~~~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ill-E 218 (231)
T 3jyu_A 141 ELKLCENSDPTNVLS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVI-E 218 (231)
T ss_dssp EEEEEETTEEEEEEE-EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEE-E
T ss_pred eEEEEecCCCCceEE-EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEE-E
Confidence 4556665543 45 7789999999999999999999998 599994 2 235554 58999999999999887 8
Q ss_pred ccccccCCCCCC
Q 011408 73 TADEIVKAPEKG 84 (486)
Q Consensus 73 ~~~~~~~~p~~~ 84 (486)
.+++.++||.+.
T Consensus 219 ~r~~dg~WP~~~ 230 (231)
T 3jyu_A 219 PQNEDGTWPRQS 230 (231)
T ss_dssp ECCTTSCCCC--
T ss_pred EecCCCCCCccc
Confidence 888888999753
No 116
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.75 E-value=0.0029 Score=46.31 Aligned_cols=68 Identities=13% Similarity=0.295 Sum_probs=56.9
Q ss_pred eEEEEE---eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceE-----EEecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVK---WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQK-----IMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~---~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qk-----l~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|.|+|- |++++|+ +.|+...|++.|++.+.+.++++..+-. +.-|+.+|.++..|.+++|.+|..+-+
T Consensus 5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566666 6999999 9999999999999999999999764332 335888999999999999999987643
No 117
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.015 Score=43.45 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=64.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+++|.... +.|-..+....|.+..++..|+++..-+.++.|..+.++.|-.++++.+|..|=++-
T Consensus 22 IniKV~~~g~ev~-FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRCRADLVR-LPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEECSSSEEE-EEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEEcCCcEEE-EEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 7899999999999 999999999999999999999999999999999999999999999999998775543
No 118
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.40 E-value=0.0074 Score=44.73 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
.|+|.. ++..+. |.|.+..++.|+.++.++++|+.+++..|.++++.++-+..+.-.||.+|.++-|+...
T Consensus 11 ~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 11 AVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred EEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 355554 889999 99999999999999999999999999999999999988888889999999999886544
No 119
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=96.25 E-value=0.036 Score=39.52 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=59.3
Q ss_pred eEEEEEeC-CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC-ceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQ-KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE-RQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~-~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~-~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|++-...+ ...+. +.|.++.+|.++-+.-+...|||+. .-++.|-|..|+...++.++++.+|..+=+
T Consensus 10 ~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 10 ITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEE
T ss_pred HHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeee
Confidence 45555554 36778 8999999999999999999999999 789999999999999999999999987654
No 120
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.25 E-value=0.00071 Score=58.40 Aligned_cols=68 Identities=9% Similarity=0.064 Sum_probs=0.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
|+|+|.-.|+... +.|.+++++..|++..++..|+++..+|++|.|..+.++.|..++++.+|..|-+
T Consensus 22 InLKV~qdGseV~-FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 22 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEE-EEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEE
Confidence 5677755788888 9999999999999999999999999999999999999999999999999988766
No 121
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.22 E-value=0.019 Score=43.64 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=61.7
Q ss_pred eEEEEEe-CC-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKW-QK-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~-~~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+- .| +... +.|.++.+...|...-++..|+++..-+++|.|..+..+.|..++++.+|..|-+++
T Consensus 26 I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp EEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred EEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 5677776 35 4778 999999999999999999999999999999999999999999999999998876653
No 122
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.00 E-value=0.16 Score=47.25 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=27.8
Q ss_pred eEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecCh
Q 011408 420 VAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQRE 459 (486)
Q Consensus 420 ~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~ 459 (486)
++..+..| +.++|||+.+.. .... ++||-..+.+++.
T Consensus 260 ~~a~vF~G-~~~~GHYt~~~~-~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTG-NYQCGHYTHITA-KETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEES-CGGGCEEEEEEE-SSSE-EEEETTEEEEESE
T ss_pred EEEEEEEC-CCCccceEEEec-CCce-eEEeCCcceeccc
Confidence 34444589 588999999986 4444 7999999998864
No 123
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.72 E-value=0.011 Score=47.30 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.8
Q ss_pred EEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC
Q 011408 3 TVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE 40 (486)
Q Consensus 3 ~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~ 40 (486)
.++|+- +|..++ +.|+.+.||..++..|+..+||+..
T Consensus 13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 366775 789999 9999999999999999999999754
No 124
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.42 E-value=0.044 Score=48.46 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=62.9
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+-.|+... +.|.++++..-|++..++..|+|+..+++++.|..+.++.+..++.+.++..|-++..
T Consensus 22 i~ikv~~~~~~v~-~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 22 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEECSSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred EEEEEEcCCCEEE-EEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 5667766667778 9999999999999999999999999999999999999999999999999988876544
No 125
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.00 E-value=0.0041 Score=59.05 Aligned_cols=70 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEee
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMG 72 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g 72 (486)
|+|+|+.+|.... +.|.+++++..|++..++..|++++.+|+++.|..+.++.|..++++.+|..|-++-
T Consensus 22 I~LKV~~~g~~v~-FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 22 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEecCCcEEE-EEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 6788887788888 999999999999999999999999999999999999999999999999999877643
No 126
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=93.98 E-value=0.22 Score=36.68 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=54.2
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcC---CCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLL---KDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l---~d~~~l~~~~i~~~~~i~l 70 (486)
..|.|+. +|+... -.+..++|+.++..-+.. .+.++...+|+ +-.+.+ +.+.+|.++++.++..+++
T Consensus 8 ~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 8 SKLRIRTPSGEFLE-RRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp EEEEEECTTSCEEE-EEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 3577887 688888 889999999999999988 67788888998 334445 4558999999999888777
No 127
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=93.16 E-value=0.016 Score=56.74 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEeec
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMMGT 73 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~g~ 73 (486)
|+|+|+..|.... +.|.++++...|++..++..|+++..++++|.|..+.++.|..++++.+|..|-++-.
T Consensus 31 i~lkv~~~~~~~~-~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 31 INLKVSDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEEecCCcEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence 5677777778888 9999999999999999999999999999999999999999999999999998776433
No 128
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.96 E-value=0.94 Score=35.16 Aligned_cols=69 Identities=4% Similarity=0.003 Sum_probs=56.4
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCC---CCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLK---DDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~---d~~~l~~~~i~~~~~i~l~ 71 (486)
..|.|+. +|.... -.++.++|+.++.+-|....+.+.....|+ +-.+.+. .+.+|.++++.++..+++.
T Consensus 14 t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 14 ARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp EEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 4688887 788888 899999999999999999888887888888 3445554 3589999999998777663
No 129
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.65 E-value=0.46 Score=34.64 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=41.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
++|+|.+. -++- |.|.+..+..+|...|++.+++|++.-+|-|+.
T Consensus 6 ~~VKV~~~-~tva-irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK-YTVV-MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS-SEEE-EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE-EEEE-EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 57888888 7888 999999999999999999999999999998864
No 130
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=91.22 E-value=0.18 Score=40.64 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=29.3
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
+.|-..+|+.+|+..+++.+|+|+++||+|.
T Consensus 60 ~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 60 FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 7788999999999999999999999999994
No 131
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=90.34 E-value=1.1 Score=35.75 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=55.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcC---CCCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLL---KDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l---~d~~~l~~~~i~~~~~i~l~ 71 (486)
..|.|+. +|.... -.+..++|+.++..-|... +.++....|+ +-.+.+ +.+.+|.++++.++..+++.
T Consensus 44 t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 44 AQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 4588887 788888 8999999999999999887 8888888888 444555 34589999999998877774
No 132
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=88.72 E-value=1.2 Score=32.97 Aligned_cols=46 Identities=9% Similarity=0.092 Sum_probs=39.4
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc-eEEEec
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER-QKIMVK 47 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~-qkl~~~ 47 (486)
+++|++.++|.... +.++++.+..+|.+++.+.++++++. -.+-|+
T Consensus 6 ~vkvK~~~~gdi~~-~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 6 QVRVKAYYRGDIMI-THFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp CEEEEEESSSCEEE-EEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred eEEEEEEeCCeEEE-EECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 47889999999999 99999999999999999999998655 344464
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.55 E-value=1.8 Score=31.31 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=53.4
Q ss_pred eEEEEEeCC-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE---ecCCcCCCCccccccCcCC
Q 011408 2 LTVSVKWQK-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM---VKGGLLKDDSDWSMLGVKQ 64 (486)
Q Consensus 2 ~~~~v~~~~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~---~~~~~l~d~~~l~~~~i~~ 64 (486)
+-+.|-|.+ ++.. +.|++..+..+|.-.|+++-.+.|+.--|. .....|+=+..|.+|||++
T Consensus 11 vRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTI-VRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 457788855 7777 999999999999999999999999999888 3456888889999999987
No 134
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.86 E-value=1.2 Score=32.37 Aligned_cols=42 Identities=7% Similarity=0.214 Sum_probs=36.5
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
++|+|.|++..|- |-|+++.+..+|+.+|.+...+ +...+.+
T Consensus 13 ~KVK~yy~DDIiA-IrvP~di~~~~L~dKi~~RLk~--~~~~l~~ 54 (85)
T 1ip9_A 13 TKIKFYYKDDIFA-LMLKGDTTYKELRSKIAPRIDT--DNFKLQT 54 (85)
T ss_dssp EEEEECBTTCCEE-EEECSCCCHHHHHHHHHHHHTS--SCEEEEE
T ss_pred eEEEEEecCcEEE-EECCCCCCHHHHHHHHHHHhcc--cceEEEE
Confidence 6788889999999 9999999999999999999998 4555553
No 135
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=86.69 E-value=0.31 Score=38.78 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=26.2
Q ss_pred eEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceecCh
Q 011408 420 VAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQRE 459 (486)
Q Consensus 420 ~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~~~ 459 (486)
.|-|.-.|. +|-+-++- .+..||.+||+...+.++
T Consensus 110 hAgIflkg~----eHAVFa~~-TS~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 110 HAGIFLKGQ----EHAVFACV-TSNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp EEEEEEETT----TEEEEEEC-CTTSSEEEETTEEEECCC
T ss_pred hhheeecCC----CceEEEEE-ccCceEEecccccccCCC
Confidence 455555565 78887777 788899999999888754
No 136
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=84.14 E-value=3 Score=40.12 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=56.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCC----CCCceEEEe------cCCcCCCCccccccCcCCCCeEEE
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGV----PPERQKIMV------KGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~v----p~~~qkl~~------~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
++++|...+.+.+ +.+++++||.|....|.+++.- ++++.-|+. +|.=|+++.+|..|++.++..+..
T Consensus 4 ~~~~~~~~~~~~~-~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~ 81 (371)
T 3ivf_A 4 LSLKISIGNVVKT-MQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEY 81 (371)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEecceeEE-EEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeec
Confidence 5677777899999 9999999999999999998753 677778885 344578888999999999987655
No 137
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=83.55 E-value=6.8 Score=30.15 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=53.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE--ecCCcCC--CCccccccCcCCCCeEEEe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM--VKGGLLK--DDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~--~~~~~l~--d~~~l~~~~i~~~~~i~l~ 71 (486)
..|.|+. +|+... -.+..++|+.++..-|... +..+...+|+ +-.+.+. .+.+|.++++.++..+++.
T Consensus 24 ~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 24 VTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 4678887 688888 8899999999999999865 5566778887 4344554 4589999999998877663
No 138
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=76.68 E-value=4.9 Score=31.96 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=50.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHh-hCCCCCceEEE--ecCCcCCC-CccccccCcCCCCe
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDL-TGVPPERQKIM--VKGGLLKD-DSDWSMLGVKQGQR 67 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~-~~vp~~~qkl~--~~~~~l~d-~~~l~~~~i~~~~~ 67 (486)
..|.|+. +|.... -.++.++||.++.+-|... .+.+.....|+ +-.+.+.| +.+|.++++.++..
T Consensus 53 t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 53 TNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 3577887 788888 8999999999999999886 34666778888 33455654 58999999998543
No 139
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=75.78 E-value=4.5 Score=30.37 Aligned_cols=36 Identities=6% Similarity=0.124 Sum_probs=32.6
Q ss_pred eEEEEEeC--------CeEEEEEEeCCCCCHHHHHHHHHHhhCCC
Q 011408 2 LTVSVKWQ--------KEVFSNVEIDTSQTPYVFKCQLYDLTGVP 38 (486)
Q Consensus 2 ~~~~v~~~--------~~~~~~~~~~~~~tv~~lk~~l~~~~~vp 38 (486)
|.|+|.|+ +..+. |-|+++.+..+|..+|..+++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~-i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFT-LLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEE-EEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEE-EEecCCCCHHHHHHHHHHHHcCC
Confidence 67889998 67789 99999999999999999999875
No 140
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=73.22 E-value=6.6 Score=28.87 Aligned_cols=61 Identities=2% Similarity=-0.014 Sum_probs=41.1
Q ss_pred EEEEEeCCeEEEEEEeCCC-CCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 3 TVSVKWQKEVFSNVEIDTS-QTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~-~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.++|.-||+.++ +... .||.+|.+++ +++++.-.+..++.++..+ ...+..+++|..+-++
T Consensus 20 ~M~I~vNGe~~e---l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 20 RHMLQLNGKDVK---WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIV 81 (87)
T ss_dssp --CEEETTEEEC---CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEE
T ss_pred ceEEEECCEEEE---CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEE
Confidence 457888999777 4665 8999998876 6766665555777666543 3444567888877664
No 141
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=72.87 E-value=2.2 Score=43.30 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=29.0
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
+.|-..+|+.+|++++++.+|+|+++||||
T Consensus 40 ~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 40 FKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred EEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 778899999999999999999999999999
No 142
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=70.65 E-value=15 Score=25.87 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred eEEEEEeCC-eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCc
Q 011408 2 LTVSVKWQK-EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDS 55 (486)
Q Consensus 2 ~~~~v~~~~-~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~ 55 (486)
++|+|+-+| +... +++....|++||. +.+|+|++.--.+.+|.++..|.
T Consensus 1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVVGEETSE-VAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp CEEEEECSSSSEEE-EECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS
T ss_pred CEEEEEEeCcccee-EEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH
Confidence 357777766 4556 8999999999875 56799999986667777776654
No 143
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=69.21 E-value=25 Score=24.28 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=39.4
Q ss_pred EEEEeCC--eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 4 VSVKWQK--EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 4 ~~v~~~~--~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
.+|+-+| ...+ +++....|+.+|.+++ +++++.--+..++.++..+. .+++|..+-++
T Consensus 5 m~i~vNg~~~~~~-~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDDGKKI-LESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETTEEEE-EEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCccCcee-EECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 3455555 4456 7788889999998876 66666655557777776654 46777776653
No 144
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=64.21 E-value=13 Score=27.76 Aligned_cols=37 Identities=8% Similarity=-0.021 Sum_probs=32.9
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE 40 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~ 40 (486)
-|+..|+|++.- |.+.+.-+..+|..++.+.+|-+.+
T Consensus 10 RiKfE~~GEkRI-i~f~RPv~f~eL~~Kv~~~fGq~ld 46 (103)
T 2cu1_A 10 RVKFEHRGEKRI-LQFPRPVKLEDLRSKAKIAFGQSMD 46 (103)
T ss_dssp EEEEEETTEEEE-EEEESSCCHHHHHHHHHHHHSSCEE
T ss_pred EEEEEecCeEEE-EeccCCccHHHHHHHHHHHhCCeee
Confidence 466778999999 9999999999999999999998543
No 145
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.09 E-value=18 Score=34.68 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=36.3
Q ss_pred eCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecC
Q 011408 8 WQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKG 48 (486)
Q Consensus 8 ~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~ 48 (486)
.+-..+. +.+.+..|+.+|++.++..++++++.|.+++.+
T Consensus 319 ~~~~~~~-~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~ 358 (396)
T 4eut_A 319 QQMTAHK-IYIHSYNTATIFHELVYKQTKIISSNQELIYEG 358 (396)
T ss_dssp TTTEEEE-EEECTTCBHHHHHHHHHHHHCCCSTTEEEESSS
T ss_pred ccceEEE-EEcCchhHHHHHHHHHHHhcCCChhhhHHHhcC
Confidence 3557778 899999999999999999999999999999876
No 146
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=60.95 E-value=26 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=33.4
Q ss_pred eEEEEEeCCeEEEEEEeCC--CCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDT--SQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~--~~tv~~lk~~l~~~~~vp~ 39 (486)
+.++|-|+|..+. +.|+. ..|-.++.+-+...+|++.
T Consensus 7 v~lkV~f~ge~~r-f~vs~~~~~tweel~~mvk~~f~L~~ 45 (87)
T 2bkf_A 7 VTLNVTFKNEIQS-FLVSDPENTTWADIEAMVKVSFDLNT 45 (87)
T ss_dssp EEEEEEETTEEEE-EEESCGGGCCHHHHHHHHHHHHTCSS
T ss_pred EEEEEEEcCCeeE-EEeccCCCCCHHHHHHHHHHHcCCCc
Confidence 6789999999999 88866 9999999999999999973
No 147
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=58.03 E-value=48 Score=24.81 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=33.6
Q ss_pred eEEEEEeCCeEEEEEEeCC--CCCHHHHHHHHHHhhCCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDT--SQTPYVFKCQLYDLTGVPPE 40 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~--~~tv~~lk~~l~~~~~vp~~ 40 (486)
+.++|-|+|+.+. +.|+. ..|-.++.+-+...||++.-
T Consensus 15 v~lkV~f~ge~~r-F~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 15 VTLNVTFKNEIQS-FLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp EEEEEEETTEEEE-EEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred EEEEEEEcCCeeE-EEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 6789999999988 88865 99999999999999999744
No 148
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.57 E-value=26 Score=25.82 Aligned_cols=58 Identities=9% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHhhCCCCCceEEEe--cCCcCCCCccccccCcCCCCeEEEeeccc-cccCCC
Q 011408 22 QTPYVFKCQLYDLTGVPPERQKIMV--KGGLLKDDSDWSMLGVKQGQRLMMMGTAD-EIVKAP 81 (486)
Q Consensus 22 ~tv~~lk~~l~~~~~vp~~~qkl~~--~~~~l~d~~~l~~~~i~~~~~i~l~g~~~-~~~~~p 81 (486)
.+..+|+.+.++.++++...-+|.. .|-.++|+..+..+ .++..+|++...+ +.+..|
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL--p~nT~lmvL~~ge~W~p~~~ 88 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMILEKGQKWMPSGP 88 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS--CSSEEEEEEETTCCCCCCCS
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC--CCCCEEEEEcCCCccCCCCC
Confidence 5799999999999999877777763 46666666665553 4667777766553 344333
No 149
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=55.97 E-value=19 Score=24.37 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=37.6
Q ss_pred EEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 6 VKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 6 v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
|+-||+.++ + ...|+.+|.+++ ++++..-.+..++.++..+ ...+..+++|..+-++
T Consensus 2 i~vNg~~~~-~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 2 VWLNGEPRP-L---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVV 58 (64)
T ss_dssp EEETTEEEC-C---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEE
T ss_pred EEECCEEEE-c---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEE
Confidence 567898888 5 568999998877 5565555444666655432 2334457778777664
No 150
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=52.84 E-value=38 Score=24.35 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=46.9
Q ss_pred EEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEE
Q 011408 16 VEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLM 69 (486)
Q Consensus 16 ~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~ 69 (486)
-+++-.+++..||+.|...+|+.-.....|.....|+++.+|-+-+++-.-.+-
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQ 60 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQ 60 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEE
Confidence 577889999999999999999999999999887779999999988887655443
No 151
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=52.34 E-value=12 Score=31.82 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=40.0
Q ss_pred EeEEEEeecCCCCCCceEEEEEccCCeEEEeeCCCceec--Chhhh---hhccCCCCCceEEEEEEeeccCC
Q 011408 419 LVAVLTHKGRSADSGHYVAWVKQESGKWIEYDDDNPLPQ--REEDI---TKLSGGGDWHMAYICMYKARSIS 485 (486)
Q Consensus 419 L~aVv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~V~~~--~~~~v---~~~~~g~~~~~aYlLfY~r~~~~ 485 (486)
..|+|++..+ |++|..| -++.||-+|=..-.+. +...+ +..-. ..+|=+|-++-++|
T Consensus 110 ~~~FI~N~~~-----HWfaiRk-igg~WyNLdS~l~~P~~i~~~yL~~fL~ql~----~eg~siFvV~g~lP 171 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRK-FGKHWFNLNSLLAGPELISDTCLANFLARLQ----QQAYSVFVVKGDLP 171 (191)
T ss_dssp CCEEEEEESS-----CEEEEEE-ETTEEEECCTTSSSCEEECHHHHHHHHGGGG----STTEEEEEEESCCC
T ss_pred hhhhhhcccc-----ceeeEEe-cCCEEEEccCCCCCCCCcChHHHHHHHHHHH----HCCCEEEEEcCCCC
Confidence 4689999875 9999999 8999999998655443 33221 11111 35788888887777
No 152
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=49.93 E-value=18 Score=24.72 Aligned_cols=59 Identities=12% Similarity=0.295 Sum_probs=37.7
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|+-||+.++ +....|+.+|.+++ ++++..-.+..++.++..+ ...+..+++|..+-++
T Consensus 2 ~i~vNg~~~~---~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 2 QILFNDQAMQ---CAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CEEESSCEEC---CCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred EEEECCEEEE---cCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 4677888776 56778999999887 5666555555666655432 2223356677666553
No 153
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=49.45 E-value=37 Score=25.13 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCCc
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGGL 50 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~~ 50 (486)
.++. +.|++.+|=.++|+.+..+|||.+..-.-+ .+|+.
T Consensus 28 n~~~-F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIV-LKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEE-EEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 5788 999999999999999999999999998765 55543
No 154
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=48.88 E-value=16 Score=30.32 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=27.6
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGV 37 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~v 37 (486)
..|++..+|+.++ +++++..|+.++......++|+
T Consensus 4 ~~i~~~vNG~~~~-~~v~~~~tLLd~LR~~lgltg~ 38 (163)
T 1ffv_A 4 KIITVNVNGKAQE-KAVEPRTLLIHFLREELNLTGA 38 (163)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEE-EecCCCCcHHHHHHhcCCCccc
Confidence 4678888999999 9999999999987764334443
No 155
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=47.10 E-value=57 Score=23.68 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=33.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPE 40 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~ 40 (486)
+-|+..|.|++.- |.+.+--+..++.+++...||-+.+
T Consensus 5 vRIKfE~~gEKRI-i~f~RPvkf~dl~qkv~~afGq~ld 42 (94)
T 2jrh_A 5 VRIKFEHNGERRI-IAFSRPVKYEDVEHKVTTVFGQPLD 42 (94)
T ss_dssp EEEEEEETTEEEE-EEECSSCCHHHHHHHHHHHHCSSEE
T ss_pred eEEEEEecCceEE-EecCCCccHHHHHHHHHHHhCCeee
Confidence 3477778999999 9999999999999999999997654
No 156
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=46.78 E-value=21 Score=25.10 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=40.1
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCCCccccccCcCCCCeEEEe
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l~ 71 (486)
+|.-||+.++ + ...|+.+|.++ ++++++.--+..+|.++..+ ...+..+++|..+-++
T Consensus 2 ~I~vNG~~~e-~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 2 LVTINGEQRE-V---QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEIL 59 (73)
T ss_dssp CEEETTEEEC-C---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEE
T ss_pred EEEECCEEEE-c---CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEE
Confidence 4677899887 5 56899988764 58888777666777666543 3445567778776653
No 157
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=45.65 E-value=21 Score=29.79 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=27.7
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCC
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGV 37 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~v 37 (486)
.+|++..+|+.++ +++++..|+.++......++|.
T Consensus 4 ~~i~~~vNG~~~~-~~v~~~~tLLd~LR~~lgl~g~ 38 (166)
T 1n62_A 4 AHIELTINGHPVE-ALVEPRTLLIHFIREQQNLTGA 38 (166)
T ss_dssp EEEEEEETTEEEE-EEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEE-EecCCCCcHHHHHHHcCCCCcc
Confidence 4678888999999 9999999999987764334443
No 158
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=44.40 E-value=32 Score=24.45 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred EEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCC-CCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 5 SVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVP-PERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 5 ~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp-~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
+|.-||+.++ +......|+.+|.+++ +++ ++.--+-++|.++..+ ...+..+++|..+-+
T Consensus 2 ~I~vNGe~~e-~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 2 NLTVNGKPST-VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEF 62 (78)
T ss_dssp EEEETTEEEE-CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEE
T ss_pred EEEECCEEEE-cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEE
Confidence 5677899777 4321568999987755 777 7666666777776554 344455777777655
No 159
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=44.10 E-value=65 Score=24.04 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=33.9
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
-|+..|+|++.- |.+.+--+..++.+++...||-+.+-
T Consensus 33 RIKfE~~gEKRI-iqf~RPvkf~dl~qkv~~afGq~ldl 70 (111)
T 2c60_A 33 RIKFEHNGERRI-IAFSRPVKYEDVEHKVTTVFGQPLDL 70 (111)
T ss_dssp EEEEEETTEEEE-EEECSSCCHHHHHHHHHHHHSSCCEE
T ss_pred EEEEEecCceEE-EecCCCccHHHHHHHHHHHhCCeeee
Confidence 467778999999 99999999999999999999977654
No 160
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=41.50 E-value=18 Score=37.69 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=37.0
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcCCC
Q 011408 9 QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLLKD 53 (486)
Q Consensus 9 ~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l~d 53 (486)
..+.+. +.+.++.|+.+|+..+.+.||||++.|.++...+..-+
T Consensus 320 ~~~~~~-~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~ 363 (676)
T 3qa8_A 320 SGRVHT-YPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALN 363 (676)
T ss_dssp SSCCCE-EECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCC
T ss_pred ccccce-eecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCC
Confidence 456677 88999999999999999999999999999975544333
No 161
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=41.39 E-value=44 Score=25.13 Aligned_cols=55 Identities=16% Similarity=0.010 Sum_probs=39.3
Q ss_pred EEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceE-EE--e----cCCcCCCCccccc
Q 011408 4 VSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQK-IM--V----KGGLLKDDSDWSM 59 (486)
Q Consensus 4 ~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qk-l~--~----~~~~l~d~~~l~~ 59 (486)
|+|.. .|.... |.|+..+|+.|+-+.|.++.++..+.-- |+ . -...++|+..+-+
T Consensus 12 vkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 12 VKVYSEDGACRS-VEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEETTSCEEE-EEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred EEEEecCCCEEE-EEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 44555 577888 9999999999999999999988655542 32 1 1246777755544
No 162
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=41.25 E-value=85 Score=23.12 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=34.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
+-|+..|.|++.- |.+.+--...++.+++...||-+.+-
T Consensus 21 vRIKfE~~gEkRI-i~f~RPv~f~el~~kv~~afGq~ldl 59 (100)
T 2npt_B 21 VRVKFEHRGEKRI-LQFPRPVKLEDLRSKAKIAFGQSMDL 59 (100)
T ss_dssp EEEEEEETTEEEE-EEECSSCCHHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEecCceEE-EecCCCccHHHHHHHHHHHhCCeeee
Confidence 3467778999999 99999999999999999999976543
No 163
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=40.93 E-value=14 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=11.4
Q ss_pred EEEEccCCeEEEeeC
Q 011408 437 AWVKQESGKWIEYDD 451 (486)
Q Consensus 437 a~vk~~~~~W~~~nD 451 (486)
+||| .++.|+..++
T Consensus 12 ~Yvr-~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVR-KFGEWVLLST 25 (27)
T ss_dssp EEEE-ETTEEEEGGG
T ss_pred eeEE-EcCeEEEccc
Confidence 6888 8999988765
No 164
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=39.99 E-value=23 Score=29.29 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=24.5
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHH
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQ 30 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~ 30 (486)
..|++.-||+.++ +++++..|+.++...
T Consensus 4 ~~i~~~vNG~~~~-v~v~p~~tLLd~LR~ 31 (160)
T 3hrd_D 4 ITINLNLNGEARS-IVTEPNKRLLDLLRE 31 (160)
T ss_dssp EEEEEEETTEEEE-EEECSSSBHHHHHHT
T ss_pred ceEEEEECCEEEE-EecCCCCCHHHHHHH
Confidence 4688889999999 999999999998653
No 165
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=39.77 E-value=47 Score=30.30 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred CeEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 1 MLTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
.|++.|..-..+++ +.|++.+|+.|+-.+|+...|+....
T Consensus 1 ~i~~~V~l~d~~~~-~~v~~~tt~~el~~~v~~~l~L~e~~ 40 (294)
T 1ef1_A 1 TISVRVTTMDAELE-FAIQPNTTGKQLFDQVVKTIGLREVW 40 (294)
T ss_dssp CEEEEEEETTEEEE-EEECTTCBHHHHHHHHHHHHTCCCGG
T ss_pred CEEEEEEECCceEE-EEECCCCcHHHHHHHHHHHcCCCCcc
Confidence 47888888656899 99999999999999999999996543
No 166
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=39.73 E-value=52 Score=24.28 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=33.4
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCC
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGG 49 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~ 49 (486)
.++. +.|++.+|=.++|+.+..+|+|.+..-.-+ .+|+
T Consensus 22 n~~~-F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYT-FWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEE-EEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEE-EEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 6788 999999999999999999999999998765 5553
No 167
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=39.14 E-value=25 Score=29.11 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=27.4
Q ss_pred EEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhhCC
Q 011408 3 TVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLTGV 37 (486)
Q Consensus 3 ~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~~v 37 (486)
.|++..+|+.++ +++++..|+.++......+++.
T Consensus 4 ~i~~~vNG~~~~-v~~~~~~tLL~~Lr~~~gl~g~ 37 (161)
T 1rm6_C 4 ILRLTLNGRARE-DLVPDNMLLLDYLRETVGLTGT 37 (161)
T ss_dssp EEEEEETTEEEE-EEEETTCBHHHHHHHTTCCTTS
T ss_pred eEEEEECCEEEE-EecCCcCcHHHHHHHcCCCccc
Confidence 578888999999 9999999999988765444433
No 168
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=38.82 E-value=74 Score=31.99 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=42.1
Q ss_pred EEEEEeCC-----eEEEEEEeCCCCCHHHHHHHHHHhhCCCC---CceEEE--ecC---CcCCCCcccccc
Q 011408 3 TVSVKWQK-----EVFSNVEIDTSQTPYVFKCQLYDLTGVPP---ERQKIM--VKG---GLLKDDSDWSML 60 (486)
Q Consensus 3 ~~~v~~~~-----~~~~~~~~~~~~tv~~lk~~l~~~~~vp~---~~qkl~--~~~---~~l~d~~~l~~~ 60 (486)
+++|.|-+ +.+. +-|+.+.||.||.+.+..+.+++. ...|++ +.+ ++++++..+..+
T Consensus 339 ~~kv~w~~~~~~~~~~~-l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 339 SFKCIWLNSQFREEEIT-LYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp CEEEEEECTTSCEEEEE-ECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred eEEEEEECCCCceEEEE-EEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 46677733 4788 899999999999999999999974 555665 344 466777666553
No 169
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=38.74 E-value=59 Score=24.14 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.1
Q ss_pred CeEEEEEe--------C-CeEEEEEEeC--CCCCHHHHHHHHHHhh
Q 011408 1 MLTVSVKW--------Q-KEVFSNVEID--TSQTPYVFKCQLYDLT 35 (486)
Q Consensus 1 ~~~~~v~~--------~-~~~~~~~~~~--~~~tv~~lk~~l~~~~ 35 (486)
|++|+|++ + .+..+ +++. ...||.+|.+.|.+..
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~-~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHK-IKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEE-EEECSCSCCBHHHHHHHHHHHT
T ss_pred CcEEEEEEchHHHHHhCCCcEEE-EecCCCCCCcHHHHHHHHHHHC
Confidence 66777774 2 35666 7877 6789999999998876
No 170
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=38.54 E-value=49 Score=24.59 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEE-ecCC
Q 011408 13 FSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIM-VKGG 49 (486)
Q Consensus 13 ~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~-~~~~ 49 (486)
+. +.|++.+|=.++|+.+..+|||.+..-.-+ ..|+
T Consensus 25 y~-F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YS-FWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CE-EEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EE-EEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 88 999999999999999999999999998766 4543
No 171
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=38.11 E-value=55 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=44.0
Q ss_pred CeEEEEEeC--C--eEEEEEEeCCCCCHHHHHHHHHHh---hCCCCCceEEEecCCcCCCCccccccCcCCCCeEEE
Q 011408 1 MLTVSVKWQ--K--EVFSNVEIDTSQTPYVFKCQLYDL---TGVPPERQKIMVKGGLLKDDSDWSMLGVKQGQRLMM 70 (486)
Q Consensus 1 ~~~~~v~~~--~--~~~~~~~~~~~~tv~~lk~~l~~~---~~vp~~~qkl~~~~~~l~d~~~l~~~~i~~~~~i~l 70 (486)
||.|.|.|. . ..+. +++....||.++-+++--. ..|......+-+.|.+.+.+.. +++|..+-+
T Consensus 12 ~~~v~v~ya~p~rq~~~~-~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~-----L~dGDRVEI 82 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKS-FQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDV-----LKEGDRIEI 82 (97)
T ss_dssp EEEEEEEEEETTEEEEEE-EEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCB-----CCTTCEEEE
T ss_pred eEEEEEEEeCCCCCEEEE-EEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCcc-----CCCCCEEEE
Confidence 578889883 3 4556 7899999999999887432 2444445667777877774433 666776655
No 172
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.89 E-value=48 Score=24.06 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=32.0
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
..++. +.|++.+|=.++|+.+..+|||.+..-.-+.
T Consensus 22 ~n~~~-F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 22 QNKLQ-FAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp SCEEE-EEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCEEE-EEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 35788 9999999999999999999999998877653
No 173
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=37.58 E-value=36 Score=26.29 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=27.8
Q ss_pred eEEEEEe--------CC-eEEEEEEeCC---CCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 2 LTVSVKW--------QK-EVFSNVEIDT---SQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 2 ~~~~v~~--------~~-~~~~~~~~~~---~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
++|+|++ ++ +.++ |+++. ..||.+|.+.|.+.+ |..+.+++
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf 64 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNL--LKERPELF 64 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTT--CCSCHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHc--cchhHhhC
Confidence 6677773 33 3677 88884 369999999998776 33344443
No 174
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.31 E-value=49 Score=22.68 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=24.0
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHHHHh
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQLYDL 34 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~ 34 (486)
|+|+|...|+.++ |++ +-.|..+|...++++
T Consensus 8 itikiqrdgqeie-idi-rvstgkeleralqel 38 (96)
T 2jvf_A 8 ITIKIQRDGQEIE-IDI-RVSTGKELERALQEL 38 (96)
T ss_dssp EEEEEEETTEEEE-EEE-ECCSSSHHHHHHHHH
T ss_pred EEEEEeeCCeEEE-EEE-EEcccHHHHHHHHHH
Confidence 6788888999998 887 445777887777765
No 175
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=36.19 E-value=37 Score=27.08 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=24.1
Q ss_pred CCcccCccccchhhhhHHHHHhcc-HHHHHHHH
Q 011408 102 HSAGLFNLGNTCYMNSTIQCLHSV-PELKSALI 133 (486)
Q Consensus 102 ~~~GL~N~GNtCY~NSvLQ~L~~~-p~f~~~l~ 133 (486)
...|+.|.-++||+|++||+...+ .+|.+...
T Consensus 12 ~fys~pN~hdncWLNtilQLfryvdepfFd~~y 44 (167)
T 1qmy_A 12 TFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVY 44 (167)
T ss_dssp ECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHHcCccchhhcc
Confidence 367899999999999999987554 34444444
No 176
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=35.32 E-value=1.2e+02 Score=21.52 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=47.3
Q ss_pred CeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEecCCcC-CCCccccccCcCCCCeEEEe
Q 011408 10 KEVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMVKGGLL-KDDSDWSMLGVKQGQRLMMM 71 (486)
Q Consensus 10 ~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~~~~~l-~d~~~l~~~~i~~~~~i~l~ 71 (486)
+..|..++|..........+-.++.|.||++..-++-..++- ...++-...-+|-|..+.++
T Consensus 22 klpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlI 84 (92)
T 1j0g_A 22 RLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRII 84 (92)
T ss_dssp TCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEE
T ss_pred CCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEec
Confidence 467766899999999999999999999999888777554443 33356666667777776664
No 177
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=34.88 E-value=46 Score=30.51 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=34.1
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCCCc
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPPER 41 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~ 41 (486)
+.+.|.. +|...+ +.|++.+|+.|+-.+|++..|+....
T Consensus 18 ~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~l~L~e~~ 57 (296)
T 3qij_A 18 GHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEHLNLLEED 57 (296)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHTCSSGG
T ss_pred EEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHHcCCCCcc
Confidence 5678887 788889 99999999999999999999997543
No 178
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=33.46 E-value=43 Score=27.85 Aligned_cols=29 Identities=3% Similarity=-0.085 Sum_probs=25.1
Q ss_pred eEEEEEeCCeEEEEEEeCCCCCHHHHHHHH
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQTPYVFKCQL 31 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~tv~~lk~~l 31 (486)
..|++..+|+.++ +++++..|+.++....
T Consensus 10 m~i~~~ing~~~~-~~v~~~~tlL~~Lr~~ 38 (168)
T 1t3q_A 10 MRISATINGKPRV-FYVEPRMHLADALREV 38 (168)
T ss_dssp EEEEEEETTEEEE-EEECTTSBHHHHHHHT
T ss_pred ceEEEEECCEEEE-EecCCCCcHHHHHHhc
Confidence 4588889999999 9999999999987653
No 179
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.28 E-value=72 Score=23.16 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=31.7
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHhhCCCCCceEEEe
Q 011408 11 EVFSNVEIDTSQTPYVFKCQLYDLTGVPPERQKIMV 46 (486)
Q Consensus 11 ~~~~~~~~~~~~tv~~lk~~l~~~~~vp~~~qkl~~ 46 (486)
.++. +.|++.+|=.++|+.+..+|+|.+..-.-+.
T Consensus 24 n~~~-F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~ 58 (86)
T 3j21_T 24 NKLT-FIVDRRATKQDIKRAVEEIFNVKVEKVNTLI 58 (86)
T ss_dssp CEEE-EEECTTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEE-EEEcCCCCHHHHHHHHHHHcCCCceEEEEeE
Confidence 5788 9999999999999999999999998877664
No 180
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=27.94 E-value=1.8e+02 Score=21.74 Aligned_cols=52 Identities=10% Similarity=0.252 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhhCCCCC--ceEEE--ecCCcCCCCccccccCcCCCCeEEEeecc
Q 011408 21 SQTPYVFKCQLYDLTGVPPE--RQKIM--VKGGLLKDDSDWSMLGVKQGQRLMMMGTA 74 (486)
Q Consensus 21 ~~tv~~lk~~l~~~~~vp~~--~qkl~--~~~~~l~d~~~l~~~~i~~~~~i~l~g~~ 74 (486)
..+..+|+.+.++.++++.. .-+|. ..|-.++|+..+..+ .++..+|++...
T Consensus 36 A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~nT~lmvL~~g 91 (100)
T 1f2r_I 36 ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL--PSNTKFVALACN 91 (100)
T ss_dssp ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS--CSCCEEEEECSS
T ss_pred cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC--CCCCEEEEEcCC
Confidence 35799999999999999763 35665 356677777676664 467777776654
No 181
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=26.85 E-value=1.8e+02 Score=21.03 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred eEEEEEeCCeEEEEEEeC--CCCCHHHHHHHHHHhhCCCCCceEEEec
Q 011408 2 LTVSVKWQKEVFSNVEID--TSQTPYVFKCQLYDLTGVPPERQKIMVK 47 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~--~~~tv~~lk~~l~~~~~vp~~~qkl~~~ 47 (486)
+.|+.|++++.=- ++++ ...+..+|...+..++.++...--+.|.
T Consensus 7 l~vKskf~aE~RR-Fs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~ 53 (86)
T 1wmh_B 7 VEVKSKFDAEFRR-FALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYT 53 (86)
T ss_dssp EEEEEEETTEEEE-EEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEE
T ss_pred EEEEeecCCeeeE-eEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 5688889987766 7775 4589999999999999997777777774
No 182
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.38 E-value=1.7e+02 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCC-CCcchHHHHHHHHhhC
Q 011408 150 MLTVATSELFNDLDKSV-KPVAPMQFWMLLRKKY 182 (486)
Q Consensus 150 ~~~~~l~~l~~~l~~~~-~~i~p~~~~~~l~~~~ 182 (486)
.-...|+..|+.+...+ ..|+..+|..+++...
T Consensus 33 ~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg 66 (100)
T 2lv7_A 33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLG 66 (100)
T ss_dssp GGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC
Confidence 44567888899887766 8899999999888763
No 183
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=25.00 E-value=84 Score=20.13 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=26.3
Q ss_pred EEEEeCCeEEEEEEeCCCCCHHHHHHHHHHhh
Q 011408 4 VSVKWQKEVFSNVEIDTSQTPYVFKCQLYDLT 35 (486)
Q Consensus 4 ~~v~~~~~~~~~~~~~~~~tv~~lk~~l~~~~ 35 (486)
++.+|.|.... +.+++.--..++.++|..++
T Consensus 14 ~~AkYkGd~Vs-f~Ld~~~iP~~~IeKIE~lL 44 (52)
T 3kz5_E 14 ATVLYKGDKMV-LNLDRSRVPTECIEKIEAIL 44 (52)
T ss_dssp EEEEEETTEEE-EEEETTTSCHHHHHHHHHHH
T ss_pred ceeEecCCeEE-EEeccccCCHHHHHHHHHHH
Confidence 67899999999 99998888888888887764
No 184
>1c8c_A DNA-binding protein 7A; protein-DNA interaction, protein stability, hyperthermophIle, achaeabacteria, X-RAY crystallography; 1.45A {Sulfolobus solfataricus} SCOP: b.34.13.1 PDB: 1bnz_A 1bbx_C* 1jic_A 1sso_A 1bf4_A* 2cvr_A 1b4o_A 1azp_A* 1azq_A* 1ca5_A 1ca6_A 1sap_A 1wd0_A 1wd1_A 1wtw_A 1wtx_A 1wtq_A 1wtp_A 1wtv_A 1wtr_A ...
Probab=24.88 E-value=45 Score=21.38 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=13.8
Q ss_pred CeEEEEEeCCeEEEEEEeC
Q 011408 1 MLTVSVKWQKEVFSNVEID 19 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~ 19 (486)
|.+|+++|.|+..+ ++++
T Consensus 1 matvkfkykgeeke-vdis 18 (64)
T 1c8c_A 1 MATVKFKYKGEEKQ-VDIS 18 (64)
T ss_dssp CCEEEEECSSSEEE-EEGG
T ss_pred CceEEEEecCccee-ecHH
Confidence 66788888888888 7764
No 185
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=24.85 E-value=1e+02 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=33.6
Q ss_pred EEEeecCCCCCCceEEEEEccCCeEEEeeCCC---ceecChhhhhhccCCCCCceEEEEEEeec
Q 011408 422 VLTHKGRSADSGHYVAWVKQESGKWIEYDDDN---PLPQREEDITKLSGGGDWHMAYICMYKAR 482 (486)
Q Consensus 422 Vv~H~G~~~~~GHY~a~vk~~~~~W~~~nD~~---V~~~~~~~v~~~~~g~~~~~aYlLfY~r~ 482 (486)
+|+|.......|||+...+..++.++..|-.. ...++.++..+. .++++|+-++.
T Consensus 84 ~I~~~~~~g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef~~~------w~G~~l~~~p~ 141 (156)
T 3k8u_A 84 FIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERFQSE------WTGLAIFLAPQ 141 (156)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHHHHH------EEEEEEEEEEC
T ss_pred EEEEEEecCCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHHHhh------CceEEEEEEcC
Confidence 44554321124799988775556666665432 466788887764 46888876654
No 186
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=23.89 E-value=2.3e+02 Score=22.16 Aligned_cols=60 Identities=10% Similarity=0.226 Sum_probs=42.1
Q ss_pred EEeCC----CCCHHHHHHHHHHhhCCCC-------CceEEEecCCcCCCC--ccccccCcCCCCeEEEeecccc
Q 011408 16 VEIDT----SQTPYVFKCQLYDLTGVPP-------ERQKIMVKGGLLKDD--SDWSMLGVKQGQRLMMMGTADE 76 (486)
Q Consensus 16 ~~~~~----~~tv~~lk~~l~~~~~vp~-------~~qkl~~~~~~l~d~--~~l~~~~i~~~~~i~l~g~~~~ 76 (486)
+.|+. .+|..+|-+.|.+.+|.+. ..+||+|---. +|. .+|.++|+++|..+.++...++
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~Df-DDnl~k~L~dLgv~~gsfLtv~DEdde 82 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDF-EDLNDRTLSEINLGNGSIILFSDEEGD 82 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTB-CTTTTSBTTTTTCCTTCEEEEEESCCS
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCc-cccccCcHHHcCcCCCcEEEEEccccc
Confidence 56653 4799999999988888764 23555543221 222 6899999999999998766544
No 187
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=23.81 E-value=1.1e+02 Score=23.33 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=40.2
Q ss_pred eeEEEeEEEEeecCC--C-C------CCceEEEEEccCCeEEEeeCCCceecChhhhhhccCCCCCceEEEEEEee
Q 011408 415 GIYDLVAVLTHKGRS--A-D------SGHYVAWVKQESGKWIEYDDDNPLPQREEDITKLSGGGDWHMAYICMYKA 481 (486)
Q Consensus 415 ~~Y~L~aVv~H~G~~--~-~------~GHY~a~vk~~~~~W~~~nD~~V~~~~~~~v~~~~~g~~~~~aYlLfY~r 481 (486)
...++...|.|--.+ . + -.||+..+. ..+||..|..+++....+ .++|+=|+-+
T Consensus 18 ~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~------~~~ng~~v~~~~~~~~iS-------~NP~~~F~~~ 80 (108)
T 2oxg_Z 18 ETVTVKALISHKMESGQRKDADGKLIPRSIINRFT------CELNGVNVVDVAIDPAVS-------TNPYFEFDAK 80 (108)
T ss_dssp EEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEE------EEETTEEEEEEEECTTBC-------SSCEEEEEEE
T ss_pred CCEEEEEEeECCCccccccCcCCCccchHheEEEE------EEECCEEEEEEEeCCccc-------cCCeEEEEEe
Confidence 567888899996322 1 1 279999998 568999998887766554 6799999865
No 188
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=23.40 E-value=2.1e+02 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=30.6
Q ss_pred CeEEEEEeC-CeEEEEEEe-CCCCCHHHHHHHHHHhhCCCCCceEEE
Q 011408 1 MLTVSVKWQ-KEVFSNVEI-DTSQTPYVFKCQLYDLTGVPPERQKIM 45 (486)
Q Consensus 1 ~~~~~v~~~-~~~~~~~~~-~~~~tv~~lk~~l~~~~~vp~~~qkl~ 45 (486)
|..|--|+. .+.+..|.+ ....+|.|||.+|.+..+....+--|.
T Consensus 6 mS~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 6 MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp BEEEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eeEEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 455666663 344444888 456799999999998877755555554
No 189
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.29 E-value=87 Score=22.19 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=28.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHhhCCC-----CCceEEEec
Q 011408 12 VFSNVEIDTSQTPYVFKCQLYDLTGVP-----PERQKIMVK 47 (486)
Q Consensus 12 ~~~~~~~~~~~tv~~lk~~l~~~~~vp-----~~~qkl~~~ 47 (486)
.+. |-|+++.+..+|..+|..+++.. ....++-||
T Consensus 3 ~~~-i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk 42 (77)
T 1pqs_A 3 IFT-LLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 42 (77)
T ss_dssp EEE-EECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE
T ss_pred EEE-EEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE
Confidence 567 89999999999999999999975 344555564
No 190
>1wvl_A DNA-binding proteins 7A/7B/7D, GCN4; leucine zipper, protein engineering, synchrotron radiation, thermophIle, X-RAY crystallography; 2.60A {Sulfolobus acidocaldarius} SCOP: b.34.13.1
Probab=22.30 E-value=68 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=13.9
Q ss_pred CeEEEEEeCCeEEEEEEeC
Q 011408 1 MLTVSVKWQKEVFSNVEID 19 (486)
Q Consensus 1 ~~~~~v~~~~~~~~~~~~~ 19 (486)
|.+|+++|.|+..+ ++++
T Consensus 1 m~tvkfkykgeeke-vd~s 18 (80)
T 1wvl_A 1 MVKVKFKYKGEEKE-VDTS 18 (80)
T ss_dssp CCEEEEEETTEEEE-EEGG
T ss_pred CceEEEEecCcccc-ccHH
Confidence 67788888888888 7653
No 191
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=21.44 E-value=1e+02 Score=28.26 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=31.6
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
+.+.|.. +| ++. +.|++.+|+.|+-.+|+...|+..
T Consensus 23 ~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~l~L~e 59 (314)
T 1h4r_A 23 FTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRTLGLRE 59 (314)
T ss_dssp EEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHTCCC
T ss_pred eEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHHhCCCC
Confidence 5677777 55 899 999999999999999999999975
No 192
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=21.20 E-value=1e+02 Score=29.22 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=32.5
Q ss_pred eEEEEEe-CCeEEEEEEeCCCCCHHHHHHHHHHhhCCCC
Q 011408 2 LTVSVKW-QKEVFSNVEIDTSQTPYVFKCQLYDLTGVPP 39 (486)
Q Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~tv~~lk~~l~~~~~vp~ 39 (486)
+.+.|.. +|.... +.|++.+|+.++-.+|+...|+..
T Consensus 86 ~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~l~L~e 123 (371)
T 3ivf_A 86 RPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARIGITN 123 (371)
T ss_dssp EEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHTTCSC
T ss_pred eEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHHcCCCC
Confidence 4577776 778888 999999999999999999999965
No 193
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=20.46 E-value=43 Score=27.42 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=25.4
Q ss_pred eEEEEEeCCeEEEEEEeCCCC---CHHHHHHHH
Q 011408 2 LTVSVKWQKEVFSNVEIDTSQ---TPYVFKCQL 31 (486)
Q Consensus 2 ~~~~v~~~~~~~~~~~~~~~~---tv~~lk~~l 31 (486)
+.|.|..+++++. ..+..+. |..+|.++|
T Consensus 30 ~~I~i~~~~~~~~-a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIRFESAECE-VELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEEETTEEEE-ECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEEECCEEEE-EEEcCCCCHHHHHHHHHhC
Confidence 4588899999999 9999999 999998866
Done!