BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011411
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/424 (46%), Positives = 262/424 (61%), Gaps = 8/424 (1%)
Query: 58 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 116
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 117 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 174
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 175 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 234
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 235 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 294
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 295 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 354
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 355 VFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNH 414
+ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDYASGTNH
Sbjct: 308 IVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNH 367
Query: 415 VLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 474
VLPTYGY + L F K TVQ L++EG L + T+A E L AHK AVT R+
Sbjct: 368 VLPTYGYTATCSSLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRV 427
Query: 475 QDIE 478
++
Sbjct: 428 NALK 431
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/424 (46%), Positives = 262/424 (61%), Gaps = 8/424 (1%)
Query: 58 THAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSE 116
T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK + + + E
Sbjct: 13 TAEQQRQLLXRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEE 72
Query: 117 LP--DPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVP 174
+ L +K+A VA NI FH AQK VE GVRC++V R + SVGLY+P
Sbjct: 73 IAAASERLSDELKQAXAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIP 132
Query: 175 GGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQ 234
GG+A L ST L L+ PA IAGCK VVL +PP I E+LY A+ GV + GGAQ
Sbjct: 133 GGSAPLFSTVLXLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQ 188
Query: 235 AISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYAS 294
AI+A+A+GTES PKV+KIFGPGN +VT AK + +ID PAGPSEVLVIAD A+
Sbjct: 189 AIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDXPAGPSEVLVIADSGAT 248
Query: 295 PVHIAADLLSQAEHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGHSFM 354
P +A+DLLSQAEHGPDSQ + + + +Q LPR E A +AL S +
Sbjct: 249 PDFVASDLLSQAEHGPDSQVILLTPAADXARR-VAEAVERQLAELPRAETARQALNASRL 307
Query: 355 VFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNH 414
+ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES GDYASGTNH
Sbjct: 308 IVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNH 367
Query: 415 VLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 474
VLPTYGY + L F K TVQ L++EG L + T+A E L AHK AVT R+
Sbjct: 368 VLPTYGYTATCSSLGLADFQKRXTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRV 427
Query: 475 QDIE 478
++
Sbjct: 428 NALK 431
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 207 bits (528), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 203/398 (51%), Gaps = 15/398 (3%)
Query: 74 SSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVK------ 127
+ I V I+ +R GDA++ + T RFD ++ ELP L+AA +
Sbjct: 33 TDIHQRVTEIIGCIRRDGDAALVELTARFDHFVVDTAA--ALELPRDVLEAAWQALPAEQ 90
Query: 128 -EAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALM 186
+A A I A+ QK G + + VGLYVPGG A PS+ L
Sbjct: 91 AKALREAAERIRAYAERQKLDSWDYREADGTLLGQKITPLDRVGLYVPGGKAAYPSSVLX 150
Query: 187 LSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESC 246
+VPA++AG ++ A P + G + VL A +GV + + GGAQA++A+A+GTE+
Sbjct: 151 NAVPAKVAGVPELIXAVPAPR-GELNALVLAAAYISGVDRVFRIGGAQAVAALAYGTETV 209
Query: 247 PKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQA 306
P+V+KI GPGN YV AK ++ + ID AGPSE+LVI+D P IA DL SQA
Sbjct: 210 PRVDKIVGPGNIYVATAKKLVFG---QVGIDXVAGPSEILVISDGRTDPDWIAXDLFSQA 266
Query: 307 EHGPDSQXXXXXXXXXXXXXAIEQEISKQCQSLPRGEFASKALGH-SFMVFARDMLEGIS 365
EH D+Q A++ I + R E +L + D+ + +
Sbjct: 267 EHDEDAQAILISPDAAHLE-AVQASIERLLPGXERAEVIRTSLERRGGXILVDDLEQAAA 325
Query: 366 FSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMY 425
+N APEHL ++V+ E I NAG++F G +T E++GDY +G NHVLPT G AR
Sbjct: 326 VANRIAPEHLELSVESPEVLVESIRNAGAIFXGRYTAEALGDYCAGPNHVLPTSGTARFS 385
Query: 426 GGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGL 463
+ + F K ++ + +G +LG + +A EGL
Sbjct: 386 SPLGVYDFQKRSSLIYCSPDGADQLGRTASLLAWGEGL 423
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 233 AQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPA 280
A AISA+ WG S P+V + G G T +I+ E +++D+P
Sbjct: 69 AGAISALRWGG-SAPRVIFLHGGGQNAHTWDTVIVGLGEPALAVDLPG 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,310,816
Number of Sequences: 62578
Number of extensions: 519766
Number of successful extensions: 1421
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 6
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)