RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 011411
(486 letters)
>gnl|CDD|215500 PLN02926, PLN02926, histidinol dehydrogenase.
Length = 431
Score = 832 bits (2152), Expect = 0.0
Identities = 365/432 (84%), Positives = 394/432 (91%), Gaps = 2/432 (0%)
Query: 47 CSMKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVK 106
CSMKSYRLSEL+ +EV SLKARPRIDFSSI V+PIV++VR+RGDA+VK+YT +FDKV
Sbjct: 1 CSMKSYRLSELSASEVDSLKARPRIDFSSILETVNPIVENVRSRGDAAVKEYTSKFDKVA 60
Query: 107 LEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAE-TSVENMKGVRCKRVARS 165
L+ VVE VS+LPDP LDA VKEAFDVAY+NIYAFHLAQKS E VE M GVRC+RVAR
Sbjct: 61 LDSVVERVSDLPDPVLDADVKEAFDVAYDNIYAFHLAQKSTEKLEVETMPGVRCRRVARP 120
Query: 166 IGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVT 225
IG+VGLYVPGGTAVLPSTALML+VPAQIAGCKTVVLATPP +DGSIC EVLYCAKKAGVT
Sbjct: 121 IGAVGLYVPGGTAVLPSTALMLAVPAQIAGCKTVVLATPPRKDGSICPEVLYCAKKAGVT 180
Query: 226 HILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEV 285
HILKAGGAQAI+AMAWGT+SCPKV+KIFGPGNQYVTAAKMILQNSEAM+SIDMPAGPSEV
Sbjct: 181 HILKAGGAQAIAAMAWGTDSCPKVDKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEV 240
Query: 286 LVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFA 345
LVIAD A+PVH+AADLLSQAEHGPDSQVVLV VGD VDLDAIE+E+ KQCQSLPRGE A
Sbjct: 241 LVIADKTANPVHVAADLLSQAEHGPDSQVVLVAVGD-VDLDAIEEEVEKQCQSLPRGEIA 299
Query: 346 SKALGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESV 405
SKALGHSF+V ARDM E ISFSNLYAPEHLIVNV+DAE W I+NAGSVFLG WTPESV
Sbjct: 300 SKALGHSFIVVARDMAEAISFSNLYAPEHLIVNVEDAESWLDKIDNAGSVFLGRWTPESV 359
Query: 406 GDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEA 465
GDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGL+ LGPYVA MAE+EGLEA
Sbjct: 360 GDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLQNLGPYVARMAEVEGLEA 419
Query: 466 HKRAVTFRLQDI 477
HKRAVT RL DI
Sbjct: 420 HKRAVTLRLGDI 431
>gnl|CDD|216133 pfam00815, Histidinol_dh, Histidinol dehydrogenase.
Length = 413
Score = 618 bits (1595), Expect = 0.0
Identities = 233/417 (55%), Positives = 291/417 (69%), Gaps = 9/417 (2%)
Query: 62 VQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVV---ENVSELP 118
++ L RP I V PI+++V+ GD ++ +YTE+FD V+LE + E + E
Sbjct: 1 LEKLLRRPIQKVDEILKKVKPIIENVKENGDKALLEYTEKFDGVELESLRVSAEEIEEAY 60
Query: 119 DPELDAAVKEAFDVAYNNIYAFHLAQK-SAETSVENMKGVRCKRVARSIGSVGLYVPGGT 177
+ LD ++EA +VA NI FH AQ S + VE GVRC + R I SVGLYVPGGT
Sbjct: 61 E-SLDPELREAIEVAIENIRKFHAAQMPSKDLDVETQPGVRCGQKVRPIESVGLYVPGGT 119
Query: 178 AVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAIS 237
AV PST LML VPA++AGCK +VL +PP +DG + E+LY A AGV I KAGGAQAI+
Sbjct: 120 AVYPSTVLMLVVPAKVAGCKKIVLCSPPPKDGKVNPEILYAAHIAGVDEIYKAGGAQAIA 179
Query: 238 AMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVH 297
AMA+GTE+ PKV+KIFGPGN YVTAAK ++ ++ IDMPAGPSEVLVIAD A P
Sbjct: 180 AMAYGTETVPKVDKIFGPGNIYVTAAKRLVSG---LVDIDMPAGPSEVLVIADETADPDF 236
Query: 298 IAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALGHSFMVFA 357
+A+DLLSQAEH PDSQVVLV + + + +E+E+ +Q + LPR E KAL HS +V
Sbjct: 237 VASDLLSQAEHDPDSQVVLVTDSEEL-AEEVEEEVERQLEQLPRKEIVRKALAHSAIVLV 295
Query: 358 RDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLP 417
+D+ E I FSN YAPEHLI+ K+AEK I+NAGS+FLG ++PES GDYASGTNHVLP
Sbjct: 296 KDLEEAIEFSNQYAPEHLIIQTKNAEKLLGKIKNAGSIFLGAYSPESAGDYASGTNHVLP 355
Query: 418 TYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFRL 474
TYGYAR Y G+S+ FLK +TVQ LTEEGLK + V T+AE EGLEAH AV RL
Sbjct: 356 TYGYARQYSGLSVADFLKRITVQELTEEGLKNVAETVMTLAEAEGLEAHAEAVRIRL 412
>gnl|CDD|119329 cd06572, Histidinol_dh, Histidinol dehydrogenase, HisD, E.C
1.1.1.23. Histidinol dehydrogenase catalyzes the last
two steps in the L-histidine biosynthesis pathway, which
is conserved in bacteria, archaea, fungi, and plants.
These last two steps are (i) the NAD-dependent oxidation
of L-histidinol to L-histidinaldehyde, and (ii) the
NAD-dependent oxidation of L-histidinaldehyde to
L-histidine. In most fungi and in the unicellular
choanoflagellate Monosiga bevicollis, the HisD domain is
fused with units that catalyze the second and third
biosynthesis steps in this same pathway.
Length = 390
Score = 594 bits (1535), Expect = 0.0
Identities = 204/390 (52%), Positives = 266/390 (68%), Gaps = 7/390 (1%)
Query: 80 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP--ELDAAVKEAFDVAYNNI 137
V I++DVR RGD ++ +YTE+FD V+LE + + E+ +D +KEA ++A NI
Sbjct: 5 VREIIEDVRERGDEALLEYTEKFDGVELESLRVSEEEIDAAYAAVDPELKEAIELAAENI 64
Query: 138 YAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCK 197
AFH AQ + VE GV + R I VGLYVPGGTA PST LML++PA++AG K
Sbjct: 65 RAFHEAQLPKDWEVETEPGVVLGQRYRPIERVGLYVPGGTAPYPSTVLMLAIPAKVAGVK 124
Query: 198 TVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGN 257
+V+ TPP +DG I +L AK AGV I K GGAQAI+A+A+GTE+ PKV+KI GPGN
Sbjct: 125 EIVVVTPPRKDGKINPAILAAAKLAGVDEIYKVGGAQAIAALAYGTETIPKVDKIVGPGN 184
Query: 258 QYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLV 317
YVTAAK ++ + IDMPAGPSEVLVIAD A+P +AADLLSQAEH PDSQ +LV
Sbjct: 185 IYVTAAKRLVSGD---VGIDMPAGPSEVLVIADETANPEFVAADLLSQAEHDPDSQAILV 241
Query: 318 IVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYAPEHLI 376
+A+E+E+ +Q LPR E A+K+L + ++ D+ E I +N YAPEHL
Sbjct: 242 TT-SEELAEAVEEEVERQLAELPRREIAAKSLLDYGAIILVDDLEEAIELANEYAPEHLE 300
Query: 377 VNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKY 436
+ +D E+ I NAGS+FLG +TPE++GDYA+G NHVLPT G AR Y G+S+D FLK
Sbjct: 301 LQTEDPEELLEKIRNAGSIFLGPYTPEALGDYAAGPNHVLPTGGTARFYSGLSVDDFLKR 360
Query: 437 MTVQSLTEEGLKKLGPYVATMAEIEGLEAH 466
+TVQ ++EGL+ L P VAT+AE EGLEAH
Sbjct: 361 ITVQEYSKEGLRALAPAVATLAEAEGLEAH 390
>gnl|CDD|234853 PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol
dehydrogenase; Reviewed.
Length = 425
Score = 578 bits (1494), Expect = 0.0
Identities = 207/432 (47%), Positives = 271/432 (62%), Gaps = 20/432 (4%)
Query: 52 YRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVV 111
LS +L R R D + + V I++DVR RGDA++ +YTE+FD V+LE +
Sbjct: 5 RWLSLSDAEFRAALPRRAREDDEDVEAAVREILEDVRERGDAALLEYTEKFDGVELESL- 63
Query: 112 ENVSELPDPELDAA-------VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVAR 164
+ + E++AA ++EA + A NI AFH AQK VE GVR + R
Sbjct: 64 ----RVSEEEIEAAYERLDPELREALEEAAENIRAFHEAQKPESWDVETAPGVRLGQRWR 119
Query: 165 SIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGV 224
I VGLYVPGG A PS+ LM ++PA++AG K +V+ TPP DG I +L A AGV
Sbjct: 120 PIERVGLYVPGGKAAYPSSVLMNAIPAKVAGVKEIVMVTPP-PDGEINPAILAAAALAGV 178
Query: 225 THILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSE 284
+ K GGAQAI+A+A+GTES PKV+KI GPGN YVTAAK ++ + IDM AGPSE
Sbjct: 179 DEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIYVTAAKRLVFGV---VGIDMIAGPSE 235
Query: 285 VLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDL-DAIEQEISKQCQSLPRGE 343
+LVIAD A P +AADLLSQAEH PD+Q +LV +L +A+ E+ +Q +LPR E
Sbjct: 236 ILVIADETADPDFVAADLLSQAEHDPDAQSILVT--TSEELAEAVAAEVERQLATLPRAE 293
Query: 344 FASKAL-GHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTP 402
A +L G ++ D+ E I SN YAPEHL + +D I NAG++FLG +TP
Sbjct: 294 IARASLEGQGAIILVDDLEEAIELSNAYAPEHLEIQTEDPRALLDRIRNAGAIFLGPYTP 353
Query: 403 ESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEG 462
ES+GDYA+G NHVLPT G AR G+S+ FLK +V L++EGLK LGP + T+AE EG
Sbjct: 354 ESLGDYAAGPNHVLPTSGTARFSSGLSVYDFLKRSSVIELSKEGLKALGPAIVTLAEAEG 413
Query: 463 LEAHKRAVTFRL 474
L+AH RAV RL
Sbjct: 414 LDAHARAVRVRL 425
>gnl|CDD|232808 TIGR00069, hisD, histidinol dehydrogenase. This model describes a
polypeptide sequence catalyzing the final step in
histidine biosynthesis, found sometimes as an
independent protein and sometimes as a part of a
multifunctional protein [Amino acid biosynthesis,
Histidine family].
Length = 393
Score = 548 bits (1415), Expect = 0.0
Identities = 202/402 (50%), Positives = 267/402 (66%), Gaps = 17/402 (4%)
Query: 80 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAA-------VKEAFDV 132
V I++DVR RGD ++ +YTE+FD V L+ + + + E++AA +KEA ++
Sbjct: 1 VKDIIEDVRARGDEALLEYTEKFDGVTLDSL-----RVSEEEIEAAYAAVDPELKEALEL 55
Query: 133 AYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQ 192
A NI AFH AQ VE GV + R + VGLYVPGG A PST LM ++PA+
Sbjct: 56 AAENIRAFHEAQLPRSWEVETEPGVILGQRVRPLERVGLYVPGGRAPYPSTVLMTAIPAK 115
Query: 193 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKI 252
+AG K +V+ TPP +DG I VL AK AGV + K GGAQAI+A+A+GTE+ PKV+KI
Sbjct: 116 VAGVKEIVVCTPPGKDGKINPAVLAAAKLAGVDEVYKVGGAQAIAALAYGTETVPKVDKI 175
Query: 253 FGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDS 312
GPGN YVTAAK ++ + IDMPAGPSEVLVIAD A+P +AADLLSQAEH PD+
Sbjct: 176 VGPGNIYVTAAKKLVF---GDVGIDMPAGPSEVLVIADETANPEFVAADLLSQAEHDPDA 232
Query: 313 QVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYA 371
Q +LV + + +A+++EI +Q +LPR E A K+L + ++ D+ E I SN YA
Sbjct: 233 QAILVTTSEEL-AEAVQEEIERQLATLPRREIARKSLEDNGAIILVDDLEEAIEISNDYA 291
Query: 372 PEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLD 431
PEHL + K+ E+ I NAGS+FLG +TPE+ GDYA+G NHVLPT G AR Y G+S+
Sbjct: 292 PEHLELQTKNPEELLPKIRNAGSIFLGPYTPEAAGDYAAGPNHVLPTGGTARFYSGLSVL 351
Query: 432 SFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFR 473
FLK +TVQ L++EGL +L P V T+AE EGLEAH +V R
Sbjct: 352 DFLKRITVQRLSKEGLAELAPAVETLAEAEGLEAHANSVRIR 393
>gnl|CDD|223219 COG0141, HisD, Histidinol dehydrogenase [Amino acid transport and
metabolism].
Length = 425
Score = 542 bits (1398), Expect = 0.0
Identities = 205/432 (47%), Positives = 272/432 (62%), Gaps = 20/432 (4%)
Query: 57 LTHAEVQSLKARPRIDFSSI--FSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENV 114
LT RPR + V PI++DV+ RGDA++ +YT +FD V+ + +
Sbjct: 4 LTTQSPDFALLRPRRSVEEVIEVRTVRPIIEDVKERGDAALLEYTAKFDGVEPDNL---- 59
Query: 115 SELPDPELDAA-------VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIG 167
+ E+DAA VKEA +VA NI AFH AQ + VE GV + R I
Sbjct: 60 -RVSAAEIDAAYQRLDPEVKEALEVAAENIEAFHEAQLPKDWLVETEPGVVLGQRWRPIE 118
Query: 168 SVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHI 227
VGLYVPGG A PST LM +VPA++AG + +V+ TPP +DG + E+L A+ AGV +
Sbjct: 119 RVGLYVPGGKAAYPSTVLMNAVPAKVAGVEEIVVVTPPPKDG-VNPEILAAARLAGVDEV 177
Query: 228 LKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLV 287
K GGAQAI+A+A+GTE+ PKV+KI GPGN YVTAAK ++ + IDM AGPSEVLV
Sbjct: 178 YKVGGAQAIAALAYGTETVPKVDKIVGPGNAYVTAAKRLVSGV---VGIDMIAGPSEVLV 234
Query: 288 IADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASK 347
IAD A+P +AADLLSQAEH PD+Q +LV + + +A+E + +Q ++LPR E A K
Sbjct: 235 IADETANPDFVAADLLSQAEHDPDAQAILVTDSEEL-AEAVEAAVERQLETLPRAEIARK 293
Query: 348 ALGHSFMVF-ARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVG 406
AL + + D+ E + SN YAPEHL + ++ + I NAGS+FLG ++PES+G
Sbjct: 294 ALENYGAIILVDDLDEAVEISNEYAPEHLELQTENPRELLGKIRNAGSIFLGHYSPESLG 353
Query: 407 DYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAH 466
DYA+G NHVLPT G AR G+S+ FLK TVQ L+EEGL +L V T+AE EGL AH
Sbjct: 354 DYAAGPNHVLPTSGTARFSSGLSVYDFLKRSTVQELSEEGLARLAETVITLAEAEGLTAH 413
Query: 467 KRAVTFRLQDIE 478
AV RL+ +E
Sbjct: 414 AEAVRIRLERLE 425
>gnl|CDD|237103 PRK12447, PRK12447, histidinol dehydrogenase; Reviewed.
Length = 426
Score = 346 bits (889), Expect = e-115
Identities = 156/427 (36%), Positives = 228/427 (53%), Gaps = 29/427 (6%)
Query: 63 QSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPEL 122
+SL+ R D S + V I+ D+ RGDA+V++Y+ +FDK L E+
Sbjct: 10 KSLEKRAETD-SKVRETVEAILADIEARGDAAVREYSRKFDKWSPGSFR-----LSAAEI 63
Query: 123 DAA-------VKEAFDVAYNNIYAFHLAQKSA--ETSVENMKGVRCKRVARSIGSVGLYV 173
DAA VKE A + + F AQ+ + + VE + GV + SVG YV
Sbjct: 64 DAAVAKVPEQVKEDIRFAQDQVRRFAEAQRDSLQDLEVETLPGVILGHRNIPVNSVGCYV 123
Query: 174 PGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGA 233
PGG L ++A M + A++AG K V+ TPP G ++ AG I GG
Sbjct: 124 PGGRYPLVASAHMSVLTAKVAGVKRVIACTPPFP-GEPPPAIVAAMHLAGADEIYVLGGV 182
Query: 234 QAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYA 293
QA++AMA+GTE+ V+ + GPGN YV AK L + ID+ AGP+E LVIAD A
Sbjct: 183 QAVAAMAYGTETIKPVDMLVGPGNAYVAEAKRQLF---GRVGIDLFAGPTETLVIADDTA 239
Query: 294 SPVHIAADLLSQAEHGPDSQVVLVI----VGDGVDLDAIEQEISKQCQSLPRGEFASKAL 349
P +A DLL QAEHGP+S VL+ + + V L IE+ ++ LP + AS A
Sbjct: 240 DPELVATDLLGQAEHGPNSPAVLITTSRKLAEEV-LAEIERLLAI----LPTADVASAAW 294
Query: 350 -GHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDY 408
+ ++ D+ E ++ ++ YA EH+ V +D + + + N G++FLGE T + GD
Sbjct: 295 RDYGEVILCDDLEEMVAEADRYASEHVQVMTEDPDWFLENMTNYGALFLGERTNVAYGDK 354
Query: 409 ASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKR 468
GTNHVLPT G AR GG+ + FLK +T Q +T+E ++G Y + + +EG E H R
Sbjct: 355 VIGTNHVLPTSGAARYTGGLWVGKFLKTVTYQRVTDEASAEIGEYCSRLCRLEGFEGHAR 414
Query: 469 AVTFRLQ 475
R++
Sbjct: 415 QADIRVR 421
>gnl|CDD|172308 PRK13770, PRK13770, histidinol dehydrogenase; Provisional.
Length = 416
Score = 261 bits (669), Expect = 1e-82
Identities = 131/402 (32%), Positives = 220/402 (54%), Gaps = 10/402 (2%)
Query: 75 SIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP--ELDAAVKEAFDV 132
S++ ++ I +V+ GD ++K Y FD K + + + ++ LD K+A
Sbjct: 20 SLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQ 79
Query: 133 AYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQ 192
+Y I A+ + K +T+ + + V C + + SVG+YVPGG A PST LM + AQ
Sbjct: 80 SYERIKAYQESIK--QTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQ 137
Query: 193 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKI 252
+AG + +V+ TPP +G + +EVL V + + GGAQ+I+A+ +GTE+ PKV+KI
Sbjct: 138 VAGVENIVVVTPPQPNG-VSQEVLAACYITQVNQVFQVGGAQSIAALTYGTETIPKVDKI 196
Query: 253 FGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDS 312
GPGNQ+V AK L + ID AGP+E+ +I D A I D+ +QAEH +
Sbjct: 197 VGPGNQFVAYAKKYLF---GQVGIDQIAGPTEIALIIDETADLDAIVYDVFAQAEHDELA 253
Query: 313 QVVLVIVGDGVDLDAIEQEISKQCQSLPRGEFASKALG-HSFMVFARDMLEGISFSNLYA 371
+ VI D L +E I+K ++ R + SK++ +++ A + E N A
Sbjct: 254 RT-YVISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIA 312
Query: 372 PEHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLD 431
PEH + + + + ++ G++F+G ++PE +GDY +G +HVLPT AR G+S++
Sbjct: 313 PEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVN 372
Query: 432 SFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAVTFR 473
FL TV L+++ +++ +A +E L H++++ R
Sbjct: 373 DFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIR 414
>gnl|CDD|172307 PRK13769, PRK13769, histidinol dehydrogenase; Provisional.
Length = 368
Score = 136 bits (343), Expect = 8e-36
Identities = 117/394 (29%), Positives = 178/394 (45%), Gaps = 41/394 (10%)
Query: 80 VHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAAVKEA---FDVAYNN 136
V IVDDV RG + +Y+ER D V E + DP + AA EA + Y+
Sbjct: 13 VEKIVDDVAERGLQAALEYSERLDGVAPEAALVEPRPGGDPAVVAAALEAAKSLEALYSR 72
Query: 137 IYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGC 196
+ +V+ GV + + LYVP A ST +ML+VPA+ AG
Sbjct: 73 L--------KPPEAVDFYGGVLRSVFWKPVRRAALYVP---ARYVSTLVMLAVPARAAGV 121
Query: 197 KTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPG 256
+ + + TPP + E+L AK+ GV +L GG ++ + V+ + GPG
Sbjct: 122 EEIYVVTPPR---GVTGELLAVAKELGVKGVLAIGGPHGLAYAVFHM----GVDMVAGPG 174
Query: 257 NQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVL 316
YV AAK +L + ID GP+E++V A+ P L+Q EHGP S
Sbjct: 175 GLYVQAAKYVLSQ---YVGIDGIEGPTELVVYAEGVP-PEVAVRGALAQLEHGPTS-FAY 229
Query: 317 VIVGDGVDLDAIEQEISKQCQSLPRGEFASKALGHSFMVFARDMLEGISFSNLYAPEHLI 376
++ D L A E EI ++ ++ G + + + E + F + APEHL
Sbjct: 230 LLSTDAELLKAAE-EIYRRERTSSMGPLEVRKVA--------GVEEAVRFIDEIAPEHL- 279
Query: 377 VNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKY 436
V + + N G+V + P DY +G +HVLPT G AR G ++ +F+K
Sbjct: 280 -EVWGRREVAYRVRNVGAVSVN--MPSPYLDYVAGISHVLPTGGTARWRGIITPLTFMKP 336
Query: 437 MTVQSLTEEGLKKLGPYVATMAEIEGLEAHKRAV 470
+ V G +L +AE EG + H+ A+
Sbjct: 337 IGVAEAV--GELELAEAARRLAEYEGFQYHREAL 368
>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CNK1,2,3-suppressor
subfamily. SAM (sterile alpha motif) domain of CNK
(connector enhancer of kinase suppressor of ras (Ksr))
subfamily is a protein-protein interaction domain. CNK
proteins are multidomain scaffold proteins containing a
few protein-protein interaction domains and are required
for connecting Rho and Ras signaling pathways. In
Drosophila, the SAM domain of CNK is known to interact
with the SAM domain of the aveugle protein, forming a
heterodimer. Mutation of the SAM domain in human CNK1
abolishes the ability to cooperate with the Ras
effector, supporting the idea that this interaction is
necessary for proper Ras signal transduction.
Length = 69
Score = 33.0 bits (76), Expect = 0.035
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 398 GEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLG 451
+W+P+ V D+ G + L Y Y V+ + L ++ Q L G+ K+G
Sbjct: 2 AKWSPKQVTDWLKGLDDCLQQYIYTFEREKVTGEQLLN-LSPQDLENLGVTKIG 54
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 35.4 bits (81), Expect = 0.056
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 61 EVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDP 120
E S +A DF + F +H V V N + K +E FDK +L++V +N++++
Sbjct: 41 EDSSNEALTNADFKNAFEALHSKVKLV-NDFSSGKKLKSEGFDK-ELKEVAQNMTKIT-- 96
Query: 121 ELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVL 180
DAA ++A AY+ + A +S E ++ K R+ VG Y GT V
Sbjct: 97 --DAATRQAVQSAYDAVRA--TVVESQEKELQQTKTDLVNAFLRTKSQVGHYAADGTYVP 152
Query: 181 PSTALMLSVPAQIAGCKTVVLATPPSQ 207
+ + I T + PP +
Sbjct: 153 AGGTYIPAGGTYILASGTYIPPNPPRE 179
>gnl|CDD|225948 COG3414, SgaB, Phosphotransferase system, galactitol-specific IIB
component [Carbohydrate transport and metabolism].
Length = 93
Score = 29.1 bits (66), Expect = 1.3
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 289 ADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQS 338
ADI + +A + E P VV I G+G+D++ I+Q++ + +
Sbjct: 50 ADIIVTSTKLADEF----EDIPKGYVV--ITGNGMDIEEIKQKLLEILKK 93
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 30.6 bits (70), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 299 AADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQ 335
AA LL + P+ L++VGDG D +E K+
Sbjct: 214 AAALL--LKKFPN--ARLLLVGDGPDRANLELLALKE 246
>gnl|CDD|119356 cd02877, GH18_hevamine_XipI_class_III, This conserved domain family
includes xylanase inhibitor Xip-I, and the class III
plant chitinases such as hevamine, concanavalin B, and
PPL2, all of which have a glycosyl hydrolase family 18
(GH18) domain. Hevamine is a class III endochitinase
that hydrolyzes the linear polysaccharide chains of
chitin and peptidoglycan and is important for defense
against pathogenic bacteria and fungi. PPL2 (Parkia
platycephala lectin 2) is a class III chitinase from
Parkia platycephala seeds that hydrolyzes beta(1-4)
glycosidic bonds linking
2-acetoamido-2-deoxy-beta-D-glucopyranose units in
chitin.
Length = 280
Score = 30.3 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 383 EKWESIIENAG--SVFLGEWTPESVGDYASG-------TNHVLPTYGYARMYGGVSL 430
+ W S + VFLG P S SG + VLP + +GGV L
Sbjct: 208 DTWTSWAKATSNAKVFLG--LPASPEAAGSGYVDPSELASLVLPVKQKSPNFGGVML 262
>gnl|CDD|235247 PRK04191, rps3p, 30S ribosomal protein S3P; Reviewed.
Length = 207
Score = 29.8 bits (68), Expect = 2.4
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 90 RGDASVKDYTERFDKV-KLEKVVENVSELPDPELDAAV 126
RG ++++ TE +K LE +V E+ +PEL+A V
Sbjct: 57 RGGKNIRELTEILEKKFGLENPQIDVKEVENPELNARV 94
>gnl|CDD|224867 COG1956, COG1956, GAF domain-containing protein [Signal
transduction mechanisms].
Length = 163
Score = 29.2 bits (66), Expect = 2.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 284 EVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGV----DLDAIE 329
E + + D++A P HIA D S +E VV + + D+D+
Sbjct: 93 ETVRVDDVHAFPGHIACDAASNSE-----IVVPIFKDGKLIGVLDIDSPT 137
>gnl|CDD|211414 cd11573, GH99_GH71_like, Glycoside hydrolase families 71, 99, and
related domains. This superfamily of glycoside
hydrolases contains families GH71 and GH99 (following
the CAZY nomenclature), as well as other members with
undefined function and specificity.
Length = 284
Score = 29.8 bits (67), Expect = 2.7
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 373 EHLIVNVKDAEKWESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYG-GVSLD 431
L + E ++ + +G WTP V + T+ + G
Sbjct: 111 PGLAYTASEWEALKAQLRAGCPYMIGLWTPWRVPNRDMITDMFDGASPWTPWRGTNPEEA 170
Query: 432 SFLKYMTVQSLTEEGLKKLGPYVATM 457
+ E Y+ T+
Sbjct: 171 YGHGVKNWRPDQEWMGANGKGYIPTV 196
>gnl|CDD|239249 cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX,
containing a redox active CXXC motif, encoded by a
genetic locus (sox operon) involved in thiosulfate
oxidation. Sulfur bacteria oxidize sulfur compounds to
provide reducing equivalents for carbon dioxide fixation
during autotrophic growth and the respiratory electron
transport chain. It is unclear what the role of SoxW is,
since it has been found to be dispensable in the
oxidation of thiosulfate to sulfate. SoxW is
specifically kept in the reduced state by SoxV, which is
essential in thiosulfate oxidation.
Length = 125
Score = 28.8 bits (65), Expect = 2.7
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 106 KLEKVVENVSELPDPELDAAVKEAFDVAYNNIY--AFHLAQKSAETS 150
KL++ L DP + A ++ F V Y NI S
Sbjct: 31 KLKRDY-----LNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALS 72
>gnl|CDD|185279 PRK15381, PRK15381, pathogenicity island 2 effector protein SseJ;
Provisional.
Length = 408
Score = 29.6 bits (66), Expect = 3.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 395 VFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSF 433
VF G+ +S+G T+H+LP+YG + +GG + F
Sbjct: 146 VFFGDSLSDSLGRMFEKTHHILPSYG--QYFGGRFTNGF 182
>gnl|CDD|114667 pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase.
This family consists of (Uracil-5-)-methyltransferases
EC:2.1.1.35 from bacteria, archaea and eukaryotes. A
5-methyluridine (m(5)U) residue at position 54 is a
conserved feature of bacterial and eukaryotic tRNAs. The
methylation of U54 is catalyzed by the
tRNA(m5U54)methyltransferase, which in Saccharomyces
cerevisiae is encoded by the nonessential TRM2 gene. It
is thought that tRNA modification enzymes might have a
role in tRNA maturation not necessarily linked to their
known catalytic activity.
Length = 353
Score = 29.3 bits (66), Expect = 4.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 100 ERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVR 158
+ F +V +E+ P ++AA +++A NNI + + SAE + M GVR
Sbjct: 217 QNFRRVL-------ATEIAKPSVNAAQ---YNIAANNIDNVQIIRMSAEEFTQAMNGVR 265
>gnl|CDD|131198 TIGR02143, trmA_only, tRNA (uracil-5-)-methyltransferase. This
family consists exclusively of proteins believed to act
as tRNA (uracil-5-)-methyltransferase. All members of
far are proteobacterial. The seed alignment was taken
directly from pfam05958 in Pfam 12.0, but higher cutoffs
are used to select only functionally equivalent
proteins. Homologous proteins excluded by the higher
cutoff scores of this model include other uracil
methyltransferases, such as RumA, active on rRNA
[Protein synthesis, tRNA and rRNA base modification].
Length = 353
Score = 29.3 bits (66), Expect = 4.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 100 ERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVR 158
+ F +V +E+ P ++AA +++A NNI + + SAE + M GVR
Sbjct: 217 QNFRRVL-------ATEIAKPSVNAAQ---YNIAANNIDNVQIIRMSAEEFTQAMNGVR 265
>gnl|CDD|106985 PHA00680, PHA00680, hypothetical protein.
Length = 143
Score = 28.5 bits (63), Expect = 4.9
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 360 MLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVF 396
+L ++ ++L APE L + A+++ +++E+AG VF
Sbjct: 94 LLNALAAADLDAPESLKAELDLAKQFRALVEDAGDVF 130
>gnl|CDD|218698 pfam05695, DUF825, Plant protein of unknown function (DUF825).
This family consists of several plant proteins greater
than 1000 residues in length. The function of this
family is unknown.
Length = 1127
Score = 29.1 bits (65), Expect = 7.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 6 LLFFNRSHIFIKPLQNRRFGFTRVQK---------YNQFFSSGLIHKRI 45
L F N H F + N+RF F+ V++ Y QF + I K+I
Sbjct: 674 LRFLNNPHHF-RFYCNKRFPFS-VERARNKNSNFTYGQFLNILFIRKKI 720
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 28.5 bits (64), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 313 QVVLVIVGDGVDLDAIEQEISK 334
V LVIVGDG +A+E ++
Sbjct: 233 DVHLVIVGDGPLREALEALAAE 254
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 28.5 bits (64), Expect = 7.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 306 AEHGPDSQVVLVIVGDGVDLDAIEQEISK 334
+ GPD++ LVI+GDG + +E +
Sbjct: 215 RKEGPDAR--LVILGDGPLREELEALAKE 241
>gnl|CDD|223170 COG0092, RpsC, Ribosomal protein S3 [Translation, ribosomal
structure and biogenesis].
Length = 233
Score = 28.4 bits (64), Expect = 8.5
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 104 KVKLEKVVENVSELPDPELDAAVKEAFDVAYN--NIYAFHLAQKSA 147
E V N+ E+ PELDA + A +A +F A K A
Sbjct: 83 LFGKENVQINIEEVKKPELDAQL-VAESIAQQLERRVSFRRAMKRA 127
>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins,
NMRa-like, atypical (a) SDRs. TMR is an atypical
NADP-binding protein of the SDR family. It lacks the
active site residues of the SDRs but has a glycine rich
NAD(P)-binding motif that matches the extended SDRs.
Proteins in this subgroup however, are more similar in
length to the classical SDRs. TMR was identified as a
reducer of triphenylmethane dyes, important
environmental pollutants. This subgroup also includes
Escherichia coli NADPH-dependent quinine oxidoreductase
(QOR2), which catalyzes two-electron reduction of
quinone; but is unlikely to play a major role in
protecting against quinone cytotoxicity. Atypical SDRs
are distinct from classical SDRs. Atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), progesterone 5-beta-reductase like
proteins, phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 272
Score = 28.4 bits (64), Expect = 9.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 194 AGCKTVVLATPPSQD--GSICKEVLYCAKKAGVTHILK--AGGAQAISAMAWG 242
G ++L +P + K + AK+AGV HI+ A GA S
Sbjct: 61 EGVDRLLLISPSDLEDRIQQHKNFIDAAKQAGVKHIVYLSASGADEDSPFLLA 113
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 28.4 bits (64), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 355 VFARDMLEGISFS--NLYAPEHLIVNVKDAEK-WESIIENAGSV 395
+ L+G SF+ N Y + L KD ++ W SI+ N GSV
Sbjct: 449 YYTHKTLKG-SFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSV 491
>gnl|CDD|237819 PRK14805, PRK14805, ornithine carbamoyltransferase; Provisional.
Length = 302
Score = 28.1 bits (63), Expect = 9.7
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 290 DIYASPVHIAADLLSQAEHGPD-SQVVLVIVGDG 322
D+Y P AD L+ AE D S+V L VGDG
Sbjct: 124 DLY-HPCQALADFLTLAEQFGDVSKVKLAYVGDG 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,626,419
Number of extensions: 2412498
Number of successful extensions: 2402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2360
Number of HSP's successfully gapped: 41
Length of query: 486
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 385
Effective length of database: 6,457,848
Effective search space: 2486271480
Effective search space used: 2486271480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)