RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011411
(486 letters)
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 647 bits (1672), Expect = 0.0
Identities = 203/437 (46%), Positives = 273/437 (62%), Gaps = 9/437 (2%)
Query: 48 SMKS-YRLSELTHAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKV 105
S + + T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK
Sbjct: 2 SFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKT 61
Query: 106 KLEKVVENVSELPD--PELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVA 163
+ + + E+ L +K+A VA NI FH AQK VE GVRC++V
Sbjct: 62 TVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVT 121
Query: 164 RSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAG 223
R + SVGLY+PGG+A L ST LML+ PA IAGCK VVL +PP I E+LY A+ G
Sbjct: 122 RPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPP----IADEILYAAQLCG 177
Query: 224 VTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPS 283
V + GGAQAI+A+A+GTES PKV+KIFGPGN +VT AK + +IDMPAGPS
Sbjct: 178 VQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPS 237
Query: 284 EVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGE 343
EVLVIAD A+P +A+DLLSQAEHGPDSQV+L+ + + + + +Q LPR E
Sbjct: 238 EVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAADM-ARRVAEAVERQLAELPRAE 296
Query: 344 FASKALGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPE 403
A +AL S ++ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PE
Sbjct: 297 TARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPE 356
Query: 404 SVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGL 463
S GDYASGTNHVLPTYGY + L F K MTVQ L++EG L + T+A E L
Sbjct: 357 SAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERL 416
Query: 464 EAHKRAVTFRLQDIEAR 480
AHK AVT R+ ++ +
Sbjct: 417 TAHKNAVTLRVNALKEQ 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 1e-10
Identities = 75/517 (14%), Positives = 154/517 (29%), Gaps = 185/517 (35%)
Query: 40 LIHKRIQCSMKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGD--ASVKD 97
L H ++ + + + L+ + F+ + P + D + +
Sbjct: 11 LSHGSLEHVLL---VPTASFFIASQLQEQ--------FNKILPEPTEGFAADDEPTTPAE 59
Query: 98 YTERFDKVKLEKVVENVSELPDPELDAAVK---EAFDVAY---NNIYAF--HLAQKSAET 149
+F L V V + D + F+ Y N+I+A L Q++ +T
Sbjct: 60 LVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN-DT 114
Query: 150 SVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDG 209
++ V+ K + ++ Y+ TA +++ K S
Sbjct: 115 TL-----VKTKELIKN------YI---------TARIMA--------KRPFDKKSNS--- 143
Query: 210 SICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQN 269
L+ A G + +A IFG G Q
Sbjct: 144 -----ALFRAVGEGNAQL-----------VA-----------IFG-G-----------Q- 163
Query: 270 SEAMISIDMPAGPSEVLV--IADIYASP-------VHIAADLLSQ-AEHGPDSQVVLVIV 319
G ++ + D+Y + + +A+ LS+ D++ V
Sbjct: 164 -----------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--- 209
Query: 320 GDGVDLDA-IEQEISKQCQSLPRGEFASKA-----------LGHSFMVFARDMLEGISFS 367
G+++ +E + P ++ L H ++V A+ + G +
Sbjct: 210 TQGLNILEWLENP-----SNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLL--GFTPG 261
Query: 368 NLYAPEH-LIVNVKD---------AEKWESIIENAGSV-----FLG----EWTP-----E 403
L + + + + WES + F+G E P
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 404 SVGDYASGTNHVLPTYGYARMYG--GVSLDSFLKYM--TVQSLTEEGLKKL------GP- 452
S+ + + N +P+ M ++ + Y+ T L K++ G
Sbjct: 322 SILEDSLENNEGVPSP----MLSISNLTQEQVQDYVNKTNSHLPAG--KQVEISLVNGAK 375
Query: 453 -YVAT--MAEIEGLEAHKRAVTFRLQDIEARQVSSKR 486
V + + GL R ++R S+R
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 55.1 bits (132), Expect = 4e-08
Identities = 78/494 (15%), Positives = 145/494 (29%), Gaps = 192/494 (38%)
Query: 23 RF-GFT--RVQK-------------YNQFFSSGL----IH--------------KRIQCS 48
+F G+ V+ +F + L IH + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 49 MKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASV----------KDY 98
+K+Y A + + + + S++F V G+A + DY
Sbjct: 123 IKNY-----ITARIMAKRPFDKKSNSALFRAV--------GEGNAQLVAIFGGQGNTDDY 169
Query: 99 TERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQ--KSAETSVENMKG 156
F+ EL ++ + Y + K + ++ +
Sbjct: 170 ---FE-----------------EL----RDLYQ-----TYHVLVGDLIKFSAETLSEL-- 198
Query: 157 VRCKRVARSIGSVGLYVPG---GTAVLPSTALMLSVP--------AQIA----GCKTVVL 201
+R A + + GL + + P +LS+P Q+A K +L
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK--LL 256
Query: 202 ATPPSQDGSICKEVLYCAKKAGVTHILKAGGAQAIS-AMAWGTESCPKVEKIFGPGNQYV 260
P + S K ++ G+ + A AI+ +W ES F +V
Sbjct: 257 GFTPGELRSYLKGATGHSQ--GL--VT----AVAIAETDSW--ES-------F-----FV 294
Query: 261 TAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVG 320
+ K I + I G + P I D L E P L I
Sbjct: 295 SVRKAI----TVLFFI----G-VRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISN 343
Query: 321 DGVDLDAIEQEISKQCQSLPRGEFASKAL--GHSFMV---FARDMLEG------------ 363
+ + ++ ++K LP G+ +L G +V + L G
Sbjct: 344 --LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPS 400
Query: 364 -------------ISFSNLY----APEH---LIVNVKDAEKWESIIENAGSVFLGEWTPE 403
+ FSN + +P H L A + I ++ + + +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLL----VPAS--DLINKDLVKNNV-SFNAK 453
Query: 404 S----VGDYASGTN 413
V D G++
Sbjct: 454 DIQIPVYDTFDGSD 467
Score = 44.3 bits (104), Expect = 1e-04
Identities = 46/311 (14%), Positives = 85/311 (27%), Gaps = 119/311 (38%)
Query: 54 LSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRN-RGDAS----VKDYTERFDKVKLE 108
++ L V+ +A P S++ D + N G S + + T + +++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPP--SILE---DSLENNEGVPSPMLSISNLT----QEQVQ 350
Query: 109 KVVENV-SELP-DPELDAAVKEAFDVAYNNI--------YAF--HLAQKSAETSVENMKG 156
V S LP +++ ++ N + Y L + A + ++ +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 157 VRCKRVARSIGSVGLYVPGGTAVLPSTA-----LMLSVPAQI---AGCKTVV-----LAT 203
+R + LP + L++ I V +
Sbjct: 408 PFSERKLK----------FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 204 P--PSQDGS----------------ICKEVLY--CAKKAGVTHILKAGGAQAISAMAWGT 243
P + DGS I + + + THIL
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--------------- 502
Query: 244 ESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLL 303
FGPG + +N + G V VI +A L
Sbjct: 503 --------DFGPGGA-SGLGVLTHRNKDG-------TG---VRVI---------VAGTL- 533
Query: 304 SQAEHGPDSQV 314
+ PD
Sbjct: 534 ---DINPDDDY 541
Score = 39.6 bits (92), Expect = 0.002
Identities = 48/275 (17%), Positives = 79/275 (28%), Gaps = 65/275 (23%)
Query: 82 PIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSEL---PDPELDAAVKEAFDVAYNNIY 138
DV NR D K + + L+ V+ N L E ++E Y
Sbjct: 1640 KAAQDVWNRADNHFK---DTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--------Y 1688
Query: 139 AFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKT 198
+ + + + ++ K K + S G +L +T Q A
Sbjct: 1689 SAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKG--LLSATQF-----TQPA---- 1735
Query: 199 VVLATPPSQDGSI-CKEVLYCAKKAGVTHILK--AG---G---AQAISAMAWGTESCPKV 249
+ E L K G+ AG G A A A ES +V
Sbjct: 1736 -LTLM------EKAAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 250 EKIFGPGNQYVTAAKMILQNSEAMISIDMPA-GPSEVLVIADIYASPVHIAADLLSQAEH 308
+F G T + ++ + M A P V A + + + +
Sbjct: 1786 --VFYRGM---TMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEALQYVVERVGKRTG 1838
Query: 309 G---------PDSQVVLVIVGDGVDLDAIEQEISK 334
+ Q V GD LD + ++
Sbjct: 1839 WLVEIVNYNVENQQYV--AAGDLRALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 67/543 (12%), Positives = 138/543 (25%), Gaps = 218/543 (40%)
Query: 10 NRSHIFIKPLQNRRFGFTRVQKYNQFFSSGLIHKRIQCSMKSYRLSELTHAEVQSLKARP 69
N ++ LQ + + + +L + S++A
Sbjct: 193 NSPETVLEMLQKLLYQID--PNWTSRSDH----------SSNIKL------RIHSIQAEL 234
Query: 70 RIDFSSIFSMVHP----IVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAA 125
R S + ++ +V+N K
Sbjct: 235 RRLLKS---KPYENCLLVLLNVQNA------------------KAW-------------- 259
Query: 126 VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCK-----R---VARSIGSVGLYVPGGT 177
AF+ + CK R V + + +
Sbjct: 260 --NAFN-------------------------LSCKILLTTRFKQVTDFLSAATTTHI--S 290
Query: 178 AVLPSTAL----MLSVPAQIAGCKTVVLATPPSQDGSICKEVLYCAKKAGVTHILKAGGA 233
S L + S+ + C+ L P + + T+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDL---PRE---VLT-----------TNPR----- 328
Query: 234 QAISAMA------------WGTESCPKVEKIFGPGNQYVTAAKMILQNSEA--------M 273
+S +A W +C K+ I + L E
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTII----------ESSLNVLEPAEYRKMFDR 377
Query: 274 ISIDMPAG---PSEVLVI---ADIYASPVHIAADL--LSQAEHGPDSQVVLVIVGDGVDL 325
+S+ P P+ +L + I + + + L S E P + +
Sbjct: 378 LSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--------ISI 428
Query: 326 DAIEQEISKQCQSLPRGEFASKALGHSFMV-------------FARDMLEGISFSNL-YA 371
+I E+ + ++ AL H +V L+ +S++ +
Sbjct: 429 PSIYLELKVKLENEY-------AL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH- 479
Query: 372 PEHLIVNVKDAEKWESIIENAGSVFLG-EWTPESV---GDYASGTNHVLPTYGYARMYGG 427
HL N++ E+ VFL + + + + + +L T + Y
Sbjct: 480 --HLK-NIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK- 531
Query: 428 VSLDSFLKYMTVQSLT-EEGLKKLGPYVATMAEIEGLEAHKRAVTFRLQD------IEA- 479
Y+ E + + ++ + E + + L EA
Sbjct: 532 -------PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 480 RQV 482
+QV
Sbjct: 585 KQV 587
Score = 45.6 bits (107), Expect = 4e-05
Identities = 65/470 (13%), Positives = 136/470 (28%), Gaps = 140/470 (29%)
Query: 92 DASVKDYTERFDKVKLEKVVENVSELPDPEL-------------DAAVKEAFDVAYNNIY 138
+ KD + + ++ ++++ D + V++ + Y
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 139 AFHLAQKSAETSVENMKGVR-CKRVARSIGSVGLYVPGGTAVLPS-----TALMLSVPAQ 192
F ++ E +M ++ R ++ + L AL+ PA+
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 193 I------AGC-KTVVLATPPSQDGSICK-EVLYCAKKAGVTHILKAGGAQAISAMAWGTE 244
G KT +A +C + C + L
Sbjct: 152 NVLIDGVLGSGKT-WVA------LDVCLSYKVQCKMDFKI-FWLNLK------------- 190
Query: 245 SCPKVEKIFGPGNQ-YVTAAKMILQNSEAMISIDMPAG---------------PSEVLVI 288
+C E + + S+ +I + + +LV+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 289 ADIYASPVHIAA-----------------DLLSQAEHGPDSQVVLVIVGDGVDLDAIEQE 331
++ + A D LS A + + L + D ++
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATT---THISLDHHSMTLTPDEVKSL 306
Query: 332 ISK----QCQSLPRGEFASKALGHSFMV---FARDMLEGISFSNLYAPEHLIVNVKDAEK 384
+ K + Q LPR + L + A + +G++ + + +H+ + +K
Sbjct: 307 LLKYLDCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDNW--KHV-----NCDK 354
Query: 385 WESIIEN---------------AGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVS 429
+IIE+ SVF P S +L + + V
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSA----HIPTILLSLIWFDVIKSDVM 405
Query: 430 --LDSFLKYMTVQSLTEEGLKKL-----GPYVATMAEIEGLEA-HKRAVT 471
++ KY SL E+ K+ Y+ ++E A H+ V
Sbjct: 406 VVVNKLHKY----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 32.8 bits (75), Expect = 0.028
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 399 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 458
+W+P V D+ G + L Y +S D L +T Q L + G+ ++G +
Sbjct: 6 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQ-LLRITHQELEDLGVSRIGHQELILE 64
Query: 459 EIEGLEAHKRAVTFRLQ 475
++ L A+ + L+
Sbjct: 65 AVDLL----CALNYGLE 77
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 32.4 bits (74), Expect = 0.045
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 393 GSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGP 452
GS + +W+P V D+ G + L Y +S D L+ +T Q L + G+ ++G
Sbjct: 4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLR-ITHQELEDLGVSRIGH 62
Query: 453 YVATMAEIEGL 463
+ ++ L
Sbjct: 63 QELILEAVDLL 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.092
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 160 KRVARSI-GSVGLYVPGGTAVLPSTALMLSVPAQI 193
K+ + + S+ LY +A P+ L++ A +
Sbjct: 19 KQALKKLQASLKLYAD-DSA--PA----LAIKATM 46
Score = 29.1 bits (64), Expect = 1.7
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 11/29 (37%)
Query: 444 EEGLKKL-----------GPYVATMAEIE 461
++ LKKL P +A A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 3.4
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 13/33 (39%)
Query: 361 LEGISFSNLYAPEH---LIVNVKDAEKWESIIE 390
L+ S LYA + L + + +E
Sbjct: 25 LQA-SL-KLYADDSAPALAIK--------ATME 47
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 30.2 bits (68), Expect = 0.39
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 399 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 458
WTP V + G + L Y + + L+ + QSL ++ LG +
Sbjct: 13 TWTPGKVATWLRGLDDSL--QDYPFEDWQLPGKNLLQ-LCPQSLEALAVRSLGHQELILG 69
Query: 459 EIEGLEAHKRAVTFRLQ 475
+E L +A++ RLQ
Sbjct: 70 GVEQL----QALSSRLQ 82
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 29.1 bits (65), Expect = 0.69
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 399 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEE-GLKKLGPYVATM 457
+WT E V Y ++ L +G + + L + + + + GL KLGP +
Sbjct: 16 DWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALL-RLNSERMMKYMGL-KLGPALKIC 73
Query: 458 AEIEGLEAHKRA 469
+ +
Sbjct: 74 NLVNKVNGRDHH 85
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 28.6 bits (63), Expect = 3.9
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 278 MPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGD 321
M P +VL I + + AE PD +LV+VG+
Sbjct: 1 MGIMPRKVLAIKNFKERFDLLPKLKGVIAEKQPD---ILVVVGN 41
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli}
SCOP: a.174.1.1
Length = 148
Score = 28.0 bits (63), Expect = 4.4
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 295 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 341
P+H+ + LL+Q V ++ G++ + +I++ LP+
Sbjct: 31 PLHLMSALLNQ----EGGSVSPLLTSAGINAGQLRTDINQALNRLPQ 73
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 28.5 bits (64), Expect = 5.9
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 193 IAGCKTVVLATPPSQDGSICKEVLYCAKKAGVT 225
A +VLA P + S+ V A G T
Sbjct: 66 AAEDALIVLAVPMTAIDSLLDAVHTHAPNNGFT 98
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.3 bits (64), Expect = 6.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 295 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 341
H+ A LL S ++ G D A+++ ++ LP+
Sbjct: 31 LPHLWAVLLKD----ERSLAWRLLEKAGADPKALKELQERELARLPK 73
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 27.7 bits (62), Expect = 6.8
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 188 SVPAQIAGCKTVVLATPPSQDGSI-------CKEVLYCAKKAGVTHILKAGGA 233
V +AG V++ D S + ++ K GV ++ A
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 28.2 bits (63), Expect = 6.9
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 272 AMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGP---DSQVVLVIVGDGVDLDAI 328
+ I++ + D+ + LS +VV +++ D V +
Sbjct: 560 KNLGIELTDDQLNITPPPDVNGLKKDPS---LSLYAIPDGDVKGRVVAILLNDEVRSADL 616
Query: 329 EQ 330
Sbjct: 617 LA 618
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.7 bits (62), Expect = 9.1
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 188 SVPAQIAGCKTVVLATPPSQDGSICKEVLY------CAKKAGVTHI 227
+ + G + T + S +EV A++ G+ ++
Sbjct: 65 IMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYV 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,385,018
Number of extensions: 458827
Number of successful extensions: 1275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1263
Number of HSP's successfully gapped: 32
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)