BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011413
(486 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNN5|NDUV1_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1
Length = 486
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/486 (91%), Positives = 472/486 (97%)
Query: 1 MAPMKGVLSLQRASLVRCYSERLSVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKD 60
MAP++G+L LQRA + S RL+ LRSFSTQ AST++TPQPPPPPPPPEKTHFGGLKD
Sbjct: 1 MAPVRGILGLQRAVSIWKESNRLTPALRSFSTQAASTSTTPQPPPPPPPPEKTHFGGLKD 60
Query: 61 EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGL 120
EDRIFTNLYG+HDPFLKGAMKRGDWHRTKDLVLKG DWIVNE+KKSGLRGRGGAGFPSGL
Sbjct: 61 EDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGL 120
Query: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180
KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY
Sbjct: 121 KWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIY 180
Query: 181 IRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLE 240
IRGEYVNER NLE+AR+EAYAAGLLGKNACGSGYDF+V+IH+GAGAYICGEETALLESLE
Sbjct: 181 IRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLE 240
Query: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC 300
GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP+WF+SFGRKNN+GTKLFC
Sbjct: 241 GKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFC 300
Query: 301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLM 360
+SGHVNKPCTVEEEMSIPLKELI+RHCGGVRGGWDNLLA+IPGGSSVPL+PK+IC+DVLM
Sbjct: 301 ISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLM 360
Query: 361 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420
D+DALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME
Sbjct: 361 DFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIME 420
Query: 421 RLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERE 480
R+KVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI+E AERE
Sbjct: 421 RMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERE 480
Query: 481 LLEATA 486
LL+A A
Sbjct: 481 LLQAAA 486
>sp|Q54I90|NDUV1_DICDI NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1
Length = 479
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/453 (73%), Positives = 379/453 (83%), Gaps = 1/453 (0%)
Query: 24 SVGLRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRG 83
+ GL Q A+ +GGLKD+DRIFTNLYG HD +LKGA+ RG
Sbjct: 17 TTGLTGKDFQATKVATFSTAQVQQAQENVRSYGGLKDKDRIFTNLYGEHDVYLKGAIARG 76
Query: 84 DWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKV-SDGRPSYLVVNADE 142
DW++TK+++ KG DWI+ E+ SGLRGRGGAGFPSGLKWSFMPK S RP YLV+NADE
Sbjct: 77 DWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFPSGLKWSFMPKTTSKDRPQYLVINADE 136
Query: 143 SEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAA 202
EPGTCKDREIMRHDPHKL+EGCL+AG MRA AAYIYIRGE+ E K LE+A EAY A
Sbjct: 137 GEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACAAYIYIRGEFHYEAKVLEQAIDEAYKA 196
Query: 203 GLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCP 262
GL+G+NACG+GY FDV++H GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA AGLYGCP
Sbjct: 197 GLIGENACGTGYKFDVYVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPAMAGLYGCP 256
Query: 263 TTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKEL 322
TTVTNVETVAV+PTILRRG WFASFGR N+GTKLFC+SGHVN PCTVEEEMSIPL+EL
Sbjct: 257 TTVTNVETVAVAPTILRRGGAWFASFGRPKNAGTKLFCISGHVNNPCTVEEEMSIPLREL 316
Query: 323 IDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDK 382
ID+HCGGV GGWDNL VIPGGSSVP+LPK+ICD+VLMD+D L+ +SGLGTAAVIVM+K
Sbjct: 317 IDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICDNVLMDFDDLRQHRSGLGTAAVIVMNK 376
Query: 383 STDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI 442
TD++ AIARLS FYKHESCGQCTPCREG GWL+ I +RL GNAK +EID L+E+++QI
Sbjct: 377 ETDMIAAIARLSKFYKHESCGQCTPCREGVGWLYDITDRLVTGNAKPDEIDSLEEISRQI 436
Query: 443 EGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475
EGHTICALGDAAAWPVQGLIRHFRPE+E RIK+
Sbjct: 437 EGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQ 469
>sp|Q92406|NDUV1_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Aspergillus niger GN=NUO51 PE=3 SV=1
Length = 496
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/447 (72%), Positives = 376/447 (84%), Gaps = 7/447 (1%)
Query: 35 ASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLK 94
A + +T Q PP H+GGLKD+DRIFTNLYG H LK AMK GDWHRTKD+VLK
Sbjct: 27 ARSFATVQDNAPPV----KHYGGLKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLK 82
Query: 95 GADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS---DGRPSYLVVNADESEPGTCKDR 151
G DW+++E+K SGLRGRGGAGFPSGLK+SFM D RP YLVVNADE EPGTCKDR
Sbjct: 83 GHDWLISELKASGLRGRGGAGFPSGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDR 142
Query: 152 EIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACG 211
EIMR DP KL+EGCL+ G M A+AAY+YIRGE+ E L+RA EAY AGL+GKNACG
Sbjct: 143 EIMRKDPQKLIEGCLVVGRAMNANAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACG 202
Query: 212 SGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETV 271
+GYDFDV+IH G GAY+CGEET+L+ES+EGK GKPRLKPPFPA GL+GCP+TVTNVETV
Sbjct: 203 TGYDFDVYIHRGMGAYVCGEETSLIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETV 262
Query: 272 AVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVR 331
AV+PTI+RRG WF+SFGR+ N+GTKLFC+SGHVN PCTVEEEMSI L+++IDRHCGGVR
Sbjct: 263 AVTPTIMRRGASWFSSFGRERNAGTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVR 322
Query: 332 GGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIA 391
GGWDNLLAVIPGGSS P+LPK ICDD LMD+DALK QSGLGTAAVIVMDKSTD+V AI+
Sbjct: 323 GGWDNLLAVIPGGSSTPVLPKTICDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAIS 382
Query: 392 RLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALG 451
RLS FYKHESCGQCTPCREG+ W +M+R++ G A+ EIDMLQE+TKQ+EGHTICALG
Sbjct: 383 RLSTFYKHESCGQCTPCREGSKWTMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALG 442
Query: 452 DAAAWPVQGLIRHFRPELERRIKEHAE 478
+A AWP+QGLIRHFRPELE RI+E+++
Sbjct: 443 EAFAWPIQGLIRHFRPELEARIREYSK 469
>sp|P24917|NDUV1_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-51 PE=2 SV=2
Length = 493
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/436 (73%), Positives = 369/436 (84%), Gaps = 3/436 (0%)
Query: 54 HFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGG 113
H+GGLKD+DRIF NLYG + P LK A K GDWH+TK+++LKG DWI+ EVK SGLRGRGG
Sbjct: 40 HYGGLKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGG 99
Query: 114 AGFPSGLKWSFMPKVS---DGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGV 170
AGFPSGLKWSFM D +P YLVVNADE EPGTCKDREIMR DPHKL+EGCL+AG
Sbjct: 100 AGFPSGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGR 159
Query: 171 GMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICG 230
M A+AAYIYIRGE++ E L+ A EAYA GL+GKNACGSGYDFDV++H GAGAY+CG
Sbjct: 160 AMNATAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCG 219
Query: 231 EETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 290
EET+L+ESLEGK GKPRLKPPFPA GL+GCP+TV NVETVAV+PTI RRG +WFA FGR
Sbjct: 220 EETSLIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGR 279
Query: 291 KNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLL 350
+ N GTKLFC+SGHVN PCTVEEEMSIP++ELID+HCGGVRGGWDNLLAVIPGGSS P+L
Sbjct: 280 ERNQGTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPIL 339
Query: 351 PKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCRE 410
PKHICD LMD+DALK QSGLGTAA+IVMDKSTDVV AI+RLS+FY+HESCGQCTPCRE
Sbjct: 340 PKHICDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCRE 399
Query: 411 GTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELE 470
G+ W IM+R + G + EIDMLQE+TKQ+EGHTICALG+A AWP+QGLIRHFRPELE
Sbjct: 400 GSKWTEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELE 459
Query: 471 RRIKEHAERELLEATA 486
RI++ A+ EA A
Sbjct: 460 ARIRKFAQENGGEALA 475
>sp|Q91YT0|NDUV1_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Mus musculus GN=Ndufv1 PE=1 SV=1
Length = 464
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/430 (74%), Positives = 367/430 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKGA++RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREIMRHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGS YDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFA FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIKEHAER 479
E R++ A++
Sbjct: 447 EDRMQRFAQQ 456
>sp|P25708|NDUV1_BOVIN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Bos taurus GN=NDUFV1 PE=1 SV=2
Length = 464
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/424 (76%), Positives = 363/424 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKGA RGDW++TK+++LKG DWI+ EVK SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFASFG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRI 473
E R+
Sbjct: 447 EERM 450
>sp|P49821|NDUV1_HUMAN NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Homo sapiens GN=NDUFV1 PE=1 SV=4
Length = 464
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/425 (75%), Positives = 364/425 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKG++ RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKLLEGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFA FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIK 474
E R++
Sbjct: 447 EERMQ 451
>sp|Q0MQI4|NDUV1_PONPY NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/425 (75%), Positives = 364/425 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKGA+ RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFA FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIK 474
E R++
Sbjct: 447 EERMQ 451
>sp|Q0MQI6|NDUV1_PANTR NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/425 (75%), Positives = 364/425 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKG++ RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFA FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIK 474
E R++
Sbjct: 447 EERMQ 451
>sp|Q8HXQ9|NDUV1_MACFA NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/425 (75%), Positives = 364/425 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKGA+ RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WFA FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGWDNLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYK+ESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIK 474
E R++
Sbjct: 447 EERMQ 451
>sp|Q0MQI5|NDUV1_GORGO NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1
Length = 464
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/425 (75%), Positives = 364/425 (85%)
Query: 50 PEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLR 109
P+KT FG LKDEDRIFTNLYG HD LKGA+ RGDW++TK+++LKG DWI+ E+K SGLR
Sbjct: 27 PKKTSFGSLKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLR 86
Query: 110 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169
GRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G
Sbjct: 87 GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGG 146
Query: 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYIC 229
M A AAYIYIRGE+ NE NL+ A +EAY AGL+GKNACGSGYDFDV + GAGAYIC
Sbjct: 147 RAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 206
Query: 230 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFG 289
GEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG WF+ FG
Sbjct: 207 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFG 266
Query: 290 RKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPL 349
R+ NSGTKLF +SGHVN PCTVEEEMS+PLKELI++H GGV GGW+NLLAVIPGGSS PL
Sbjct: 267 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPL 326
Query: 350 LPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCR 409
+PK +C+ VLMD+DAL Q+GLGTAAVIVMD+STD+V AIARL FYKHESCGQCTPCR
Sbjct: 327 IPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCR 386
Query: 410 EGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469
EG W+ +M R G+A+ EID L E++KQIEGHTICALGD AAWPVQGLIRHFRPEL
Sbjct: 387 EGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEL 446
Query: 470 ERRIK 474
E R++
Sbjct: 447 EERMQ 451
>sp|P56912|NUOF1_RHIME NADH-quinone oxidoreductase subunit F 1 OS=Rhizobium meliloti
(strain 1021) GN=nuoF1 PE=3 SV=1
Length = 434
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/419 (72%), Positives = 353/419 (84%), Gaps = 1/419 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
L+DEDRIFTN+YG+ D L+GAM RG W TK + KG DWI+NEVK SGLRGRGGAGFP
Sbjct: 2 LRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGFP 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+GLKWSFMPK SDGRP YLVVNADESEPGTCKDR+IMRHDPH L+EGC+IA M A AA
Sbjct: 62 TGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHAA 121
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIY+RGE++ ER+ L+ A E Y GLLGKN GYD D+++H+GAGAYICGEETALLE
Sbjct: 122 YIYVRGEFIREREALQAAIDECYEYGLLGKNN-KLGYDIDIYVHHGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV+PTILRRG W+ SFGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
L+ VSGHVN+PCTVE+ MSIP ELI++HCGG+RGGWDNLLAVIPGGSSVP +P D
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
+MDYD L+ + SGLGTAAVIVMDKSTD++ AI RLS FYKHESCGQCTPCREGTGW+
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEH 476
+MER+ G A+ EIDML +VTKQ+EGHTICALGDAAAWP+QGLI+HFRPE+E+RI E+
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEY 419
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase subunit F OS=Rhodobacter capsulatus
GN=nuoF PE=3 SV=1
Length = 431
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/417 (71%), Positives = 347/417 (83%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
L D DRIFTN+YGMHD LKGAM RG W T ++ G DWI+ +VK SGLRGRGGAGFP
Sbjct: 2 LNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGFP 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+GLKWSFMPK SDGRPS+LV+NADESEPGTCKDREIMRHDPH L+EG LIAG M A AA
Sbjct: 62 TGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARAA 121
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGEYV E++ L+ A E Y AGL+GKNAC S YDFDV++H+GAGAYICGEETALLE
Sbjct: 122 YIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALLE 181
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PR+KPPFPA +GLYGCPTTV NVE++AV PTILRRG WFA GR NN+G K
Sbjct: 182 SLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGVK 241
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
LF +SGHVN PC VEE MSI +KELI++H GGVRGGW NL AVIPGG+S P++P H+C+D
Sbjct: 242 LFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCED 301
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
+MDYD ++ QS GTA +IVMD+ TD++ AIARLS F+KHESCGQCTPCREGT W+W
Sbjct: 302 AIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMWR 361
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+MERL G A++EEIDML VTKQ+EGHTICALGDAAAWP+QGLIRH+R E+E RIK
Sbjct: 362 VMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIK 418
>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase subunit F OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoF PE=3 SV=1
Length = 421
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/417 (70%), Positives = 352/417 (84%), Gaps = 2/417 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNLYG LK + KRGDW+ TK L+ KG D+I++EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCLIA + A+
Sbjct: 62 TGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANTC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFA+ G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC +EE M +PLKELI+++ GGVRGGW+NL A+IPGG+SVPLLPK +C +
Sbjct: 241 VFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ V SGLGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+M RL GNAK EID L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E+RIK
Sbjct: 360 VMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIK 416
>sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 OS=Paracoccus denitrificans
GN=nqo1 PE=1 SV=1
Length = 431
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/417 (70%), Positives = 350/417 (83%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
L D+DRIFTNLYGM D L GA KRG W T ++ +G D I++E+K SGLRGRGGAGFP
Sbjct: 2 LNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFP 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK SDGRPSYLV+NADESEP TCKDREIMRHDPH L+EG LIA M A AA
Sbjct: 62 TGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAA 121
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE++ ER+ L+ A E Y AGLLG+NA GSG+DFD+++H+GAGAYICGEETALLE
Sbjct: 122 YIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLE 181
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PR+KPPFPA AGLYGCPTTV NVE++AV PTILRRG +WFASFGR NN+G K
Sbjct: 182 SLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVK 241
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
LF ++GHVN PC VEE MSIP++ELI++H GG+RGGW NL AVIPGG+S P+L C++
Sbjct: 242 LFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCEN 301
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
+MDYD ++ V+S GTA +IVMD+STDVV AI RLS F+KHESCGQCTPCREGTGW+
Sbjct: 302 AIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMMR 361
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+MERL G+A++EEIDML +VTKQ+EGHTICALGDAAAWP+QGLIR+FR E+E RIK
Sbjct: 362 VMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418
>sp|Q1RHA0|NUOF_RICBR NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain
RML369-C) GN=nuoF PE=3 SV=1
Length = 417
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/417 (70%), Positives = 347/417 (83%), Gaps = 1/417 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK EDRIFTNL+G LK + K GDW TK L+ KG +WI+ EVKKSGLRGRGGAGF
Sbjct: 2 LKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G KWSFMPK S +PSYLVVNADESEPGTCKDR+I+R++PHKL+EGCL+A + A++
Sbjct: 62 TGTKWSFMPKESK-KPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANSC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG++ D+++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFAS G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M IPLKE+I++H GGVRGGWDNL A+IPGGSSVPLLPK +C+
Sbjct: 241 IFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCET 300
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
MD+D+LKA S LGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 301 ADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 360
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+M RL G+AK EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct: 361 VMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417
>sp|A8GYE0|NUOF_RICB8 NADH-quinone oxidoreductase subunit F OS=Rickettsia bellii (strain
OSU 85-389) GN=nuoF PE=3 SV=1
Length = 417
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 295/417 (70%), Positives = 347/417 (83%), Gaps = 1/417 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK EDRIFTNL+G LK + K GDW TK L+ KG +WI+ EVKKSGLRGRGGAGF
Sbjct: 2 LKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G KWSFMPK S +PSYLVVNADESEPGTCKDR+I+R++PHKL+EGCL+A + A++
Sbjct: 62 TGTKWSFMPKESK-KPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANSC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG++ D+++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFAS G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M IPLKE+I++H GGVRGGWDNL A+IPGGSSVPLLPK +C+
Sbjct: 241 IFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCET 300
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
MD+D+LKA S LGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 301 ADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 360
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+M RL G+AK EID L EVTK+IEGHTICALGDAAAWP+QGLI+HFR E+E RI+
Sbjct: 361 VMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417
>sp|Q68XY3|NUOF_RICTY NADH-quinone oxidoreductase subunit F OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoF PE=3 SV=1
Length = 421
Score = 629 bits (1623), Expect = e-179, Method: Compositional matrix adjust.
Identities = 293/417 (70%), Positives = 350/417 (83%), Gaps = 2/417 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IF NLYG LK + KRGDW+ TK L+ KG D+I++EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCLIA + A+
Sbjct: 62 TGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFA+ G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC +EE M IPLKELI+++ GGVRGGWDNL A+IPGG+SVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ V SGLGT +IVMD+STD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+M RL GNAK EI+ L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct: 360 VMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIK 416
>sp|A8F0M0|NUOF_RICM5 NADH-quinone oxidoreductase subunit F OS=Rickettsia massiliae
(strain Mtu5) GN=nuoF PE=3 SV=1
Length = 421
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 294/420 (70%), Positives = 347/420 (82%), Gaps = 2/420 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNL+G LK + KRGDW TK L+ KG D+IV EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNAC SG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFA G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKLLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ SGLGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 477
+M RL GNAK EID L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct: 360 VMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSYS 419
>sp|Q4UKA6|NUOF_RICFE NADH-quinone oxidoreductase subunit F OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoF PE=3 SV=1
Length = 422
Score = 623 bits (1606), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/417 (70%), Positives = 346/417 (82%), Gaps = 2/417 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNL+G LK + KRGDW TK L+ KG ++I+ EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANDC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFAS G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ SGLGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
+M RL GNA+ EID L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK
Sbjct: 360 VMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416
>sp|A8EXI1|NUOF_RICCK NADH-quinone oxidoreductase subunit F OS=Rickettsia canadensis
(strain McKiel) GN=nuoF PE=3 SV=1
Length = 420
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/416 (69%), Positives = 347/416 (83%), Gaps = 1/416 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IF NL+G LK + KRGDW TK L+ KG D+I+ EVK+SGLRGRGGAGF
Sbjct: 2 LKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKNACGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA+ GLYGCPTT+ NVE++AV PTILRRG +WFAS G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M IPLKELI+++ GGV+GGW+NL A+IPGGSSVPL+PK IC+
Sbjct: 241 VFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICET 300
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ SGLGT +IVM++STD+V AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 301 VDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMWR 360
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 473
+M RL GNAK EID L VTK IEGHTICALGDAAAWP+QGLIRHFR E+E RI
Sbjct: 361 VMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERI 416
>sp|A8GM77|NUOF_RICAH NADH-quinone oxidoreductase subunit F OS=Rickettsia akari (strain
Hartford) GN=nuoF PE=3 SV=1
Length = 423
Score = 620 bits (1599), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/420 (69%), Positives = 348/420 (82%), Gaps = 2/420 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNL+G LK + KRGDW TK L+ KG D+I+ E+KKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK S+ +P YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNSE-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY L+GKNACGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRR WFAS G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ V SGLGT +IVMDKSTD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 477
+M RL GNAK EID L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct: 360 VMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSYS 419
>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase subunit F OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoF PE=3 SV=1
Length = 421
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 290/420 (69%), Positives = 344/420 (81%), Gaps = 2/420 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNL+G LK + KRGDW TK L+ KG D+IV EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK + + YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNLE-KSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKN+CGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFA G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ SGLGT +IVMD+STD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 477
+M RL GN K EID L VTK+IEGHTICALGDAAAWP+QGLIRHFR E+E RIK +
Sbjct: 360 VMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSDS 419
>sp|A8GQT6|NUOF_RICRS NADH-quinone oxidoreductase subunit F OS=Rickettsia rickettsii
(strain Sheila Smith) GN=nuoF PE=2 SV=1
Length = 421
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/420 (68%), Positives = 343/420 (81%), Gaps = 2/420 (0%)
Query: 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117
LK+ED+IFTNL+G LK + KRGDW TK L+ KG D+IV EVKKSGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGFS 61
Query: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+G+KWSFMPK + + YLVVNADESEPGTCKDR+I+R +PHKL+EGCL+A + A+
Sbjct: 62 TGMKWSFMPKNLE-KSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNC 120
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
YIYIRGE+ NE N++RA EAY GL+GKN+CGSG+D ++++H GAGAYICGEETALLE
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SLEGK+G PRLKPPFPA GLYGCPTT+ NVE++AV PTILRRG WFA G+ NN+GTK
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTK 240
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
+FC+SGHVNKPC VEE M I LKELI+++ GGVRGGWDNL A+IPGGSSVPLLPK +C +
Sbjct: 241 IFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLC-E 299
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+L+ SGLGT +IVMD+STD++ AIARLS FY HESCGQCTPCREGTGW+W
Sbjct: 300 VDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWR 359
Query: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 477
+M RL GN EID L VTK IEGHTICALGDAAAWP+QGLIRHFR E+E RIK ++
Sbjct: 360 VMMRLVKGNVTKSEIDELLNVTKAIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSYS 419
>sp|P65567|NUOF_MYCTU NADH-quinone oxidoreductase subunit F OS=Mycobacterium tuberculosis
GN=nuoF PE=3 SV=1
Length = 445
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 262/376 (69%), Gaps = 8/376 (2%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDG---RPSYLVVNADESEPGTCKDREI 153
D +++ VK SGLRGRGGAGF +G KWSF+P+ G +P YLVVNADESEPGTCKD +
Sbjct: 48 DDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPL 107
Query: 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213
M PH L+EG +IA +RA A++Y+RGE V + L A EAYAAG LG+N GSG
Sbjct: 108 MLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSG 167
Query: 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAV 273
+D ++ +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLYGCPT + NVET+A
Sbjct: 168 FDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIAS 227
Query: 274 SPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333
P+I+ G DWF S G + + G L+ +SGHV +P E + I L+EL+D + GGVR G
Sbjct: 228 VPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG 286
Query: 334 WDNLLAVIPGGSSVPLLP-KHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIAR 392
L PGGSS PLL +H+ DV +DY+ + A S LGT A+ + D++T VV A+ R
Sbjct: 287 -HRLKFWTPGGSSTPLLTDEHL--DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRR 343
Query: 393 LSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGD 452
+ FYKHESCG+CTPCREGT WL I ERL+ G E+ID L +++ I G + CALGD
Sbjct: 344 WTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGD 403
Query: 453 AAAWPVQGLIRHFRPE 468
AA PV I+HFR E
Sbjct: 404 GAASPVMSSIKHFRDE 419
>sp|P65568|NUOF_MYCBO NADH-quinone oxidoreductase subunit F OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=nuoF PE=3 SV=1
Length = 445
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 262/376 (69%), Gaps = 8/376 (2%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDG---RPSYLVVNADESEPGTCKDREI 153
D +++ VK SGLRGRGGAGF +G KWSF+P+ G +P YLVVNADESEPGTCKD +
Sbjct: 48 DDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPL 107
Query: 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213
M PH L+EG +IA +RA A++Y+RGE V + L A EAYAAG LG+N GSG
Sbjct: 108 MLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSG 167
Query: 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAV 273
+D ++ +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLYGCPT + NVET+A
Sbjct: 168 FDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIAS 227
Query: 274 SPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333
P+I+ G DWF S G + + G L+ +SGHV +P E + I L+EL+D + GGVR G
Sbjct: 228 VPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG 286
Query: 334 WDNLLAVIPGGSSVPLLP-KHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIAR 392
L PGGSS PLL +H+ DV +DY+ + A S LGT A+ + D++T VV A+ R
Sbjct: 287 -HRLKFWTPGGSSTPLLTDEHL--DVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRR 343
Query: 393 LSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGD 452
+ FYKHESCG+CTPCREGT WL I ERL+ G E+ID L +++ I G + CALGD
Sbjct: 344 WTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGD 403
Query: 453 AAAWPVQGLIRHFRPE 468
AA PV I+HFR E
Sbjct: 404 GAASPVMSSIKHFRDE 419
>sp|P56913|NUOF2_RHIME NADH-quinone oxidoreductase subunit F 2 OS=Rhizobium meliloti
(strain 1021) GN=nuoF2 PE=3 SV=2
Length = 421
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/379 (51%), Positives = 256/379 (67%), Gaps = 3/379 (0%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRH 156
D IV VK+S LRGRGGAGFP+G+KWSF+PK + G+P YL NADE EPGT KDR IM
Sbjct: 40 DEIVELVKESNLRGRGGAGFPTGMKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMER 98
Query: 157 DPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216
DPH+L+EG ++ + A AY+YIRGEYV + +E+A EA+ G LG GSG++F
Sbjct: 99 DPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNF 158
Query: 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPT 276
VHIH GAGAYICGEETA+LESLEGK+ +PRLKPPFPA AGLY PT + NVET+A P
Sbjct: 159 MVHIHRGAGAYICGEETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPH 218
Query: 277 ILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDN 336
I+ RG WF G + G KL+C+SG V KP E M I L+EL++ H GG G
Sbjct: 219 IVMRGSAWFRGIGPDRSPGPKLYCLSGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RK 277
Query: 337 LLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYF 396
+ AVIPGG S P++P+ +V MD+D+L A S LG+A V+V+D ST +V R+ F
Sbjct: 278 VKAVIPGGVSAPVIPEGEL-EVGMDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEF 336
Query: 397 YKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAW 456
+ HESCG+CTPCREG W ++ R++ G + +++ L+ + K I G+T CALGD AA
Sbjct: 337 FHHESCGKCTPCREGLDWTVKVLRRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAM 396
Query: 457 PVQGLIRHFRPELERRIKE 475
++ ++HFR E I+E
Sbjct: 397 GLRAALKHFRAEFVAHIEE 415
>sp|Q9XAQ9|NUOF_STRCO NADH-quinone oxidoreductase subunit F OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=nuoF PE=3 SV=1
Length = 449
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 260/378 (68%), Gaps = 6/378 (1%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRH 156
D ++ VK+SGLRGRGGAGFP+G+KW F+P+ DG+P YLVVNADESEPGTCKD ++
Sbjct: 54 DDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFA 112
Query: 157 DPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216
+PH L+EG +IA +R+S A+IY+RGE V + L A +EAYAAG LG+N GSG D
Sbjct: 113 NPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGENILGSGLDL 172
Query: 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPT 276
+ +H GAGAYICGEETALL+SLEG++G+PRL+PPFPA AGLY CPT V NVE++A P
Sbjct: 173 TLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPA 232
Query: 277 ILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDN 336
IL +G DWF S G + + G L+ +SGHV P E + I L++L+D GG+R G
Sbjct: 233 ILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLDM-SGGMRPG-HR 290
Query: 337 LLAVIPGGSSVPLLP-KHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSY 395
L PGGSS P+ +H+ DV +DY+ + A S LGT A+ D++T VV A+ R +
Sbjct: 291 LKFWTPGGSSTPMFTDEHL--DVPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTE 348
Query: 396 FYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAA 455
FY HESCG+CTPCREGT WL ++ ++ G ++ ++D L ++ I G + CALGD AA
Sbjct: 349 FYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAA 408
Query: 456 WPVQGLIRHFRPELERRI 473
P+ +++FR E E I
Sbjct: 409 SPIFSSLKYFREEYEEHI 426
>sp|Q56222|NQO1_THET8 NADH-quinone oxidoreductase subunit 1 OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=nqo1 PE=1 SV=1
Length = 438
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 254/377 (67%), Gaps = 10/377 (2%)
Query: 94 KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREI 153
K D ++ EVK+SGLRGRGGAGFP+GLKWSFMPK DG+ YL+ NADESEPG+ KDR I
Sbjct: 48 KTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYI 106
Query: 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213
+ PH L+EG ++AG +RA+ YIY+RGEY LE+A +EA A G LGKN G+
Sbjct: 107 LEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTD 166
Query: 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAV 273
+ FD+H+H GAGAYICGEETAL+ SLEG + PRLKPPFPA +GL+G PTT+ NVET+A
Sbjct: 167 FSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAS 226
Query: 274 SPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333
I+ RG DWFA G + + G KL+ +SG V +P E M +ELI GG
Sbjct: 227 VVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP--- 283
Query: 334 WDNLLAVIPGGSSVPLLPKHICDDVL---MDYDALKAVQSGLGTAAVIVMDKSTDVVDAI 390
+ + A+IPGGSS P LP ++VL M Y+ L+A S LGT VI++ + +VDA+
Sbjct: 284 LEPIQAIIPGGSSTPPLP--FTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAM 341
Query: 391 ARLSYFYKHESCGQCTPCREGT-GWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICA 449
L+ FY HESCG+CTPCREG G++ + ++ G + ++++ L+ + IEG + C
Sbjct: 342 WNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCP 401
Query: 450 LGDAAAWPVQGLIRHFR 466
L DAA WPV+G +RHF+
Sbjct: 402 LADAAVWPVKGSLRHFK 418
>sp|P31979|NUOF_ECOLI NADH-quinone oxidoreductase subunit F OS=Escherichia coli (strain
K12) GN=nuoF PE=1 SV=3
Length = 445
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/381 (44%), Positives = 234/381 (61%), Gaps = 5/381 (1%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRH 156
D IVN+VK +GL+GRGGAGF +GLKWS MPK YL+ NADE EPGT KDR +M
Sbjct: 48 DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107
Query: 157 DPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216
PH L+EG LI+ ++A YI++RGEY+ NL RA EA AGLLGKN G+G+DF
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167
Query: 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPT 276
++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA +G +G PT V NVET+ P
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227
Query: 277 ILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDN 336
IL G +W+ + + ++GTKL SG V P E +E+++ + GG+R G
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286
Query: 337 LLAVIPGGSSVPLLPK-HICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSY 395
A PGG+ L + H+ D+ M+++++ S LGTA + +D ++V + L
Sbjct: 287 FKAWQPGGAGTDFLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEE 344
Query: 396 FYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAA 454
F+ ESCG CTPCR+G W I+ L+ G + +I+ L+++ + + G T CA A
Sbjct: 345 FFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGA 404
Query: 455 AWPVQGLIRHFRPELERRIKE 475
P+Q I++FR E E IK+
Sbjct: 405 VEPLQSAIKYFREEFEAGIKQ 425
>sp|Q89AU2|NUOF_BUCBP NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=nuoF PE=3 SV=1
Length = 444
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/409 (41%), Positives = 247/409 (60%), Gaps = 9/409 (2%)
Query: 68 LYGMHDPFLKGAMKRGDWHRTKDLVLK--GADWIVNEVKKSGLRGRGGAGFPSGLKWSFM 125
L D KR + +R + V+ ++ +++ +K+SGL+GRGGAGF +GLKWS M
Sbjct: 18 LNAQQDTVWIKEYKRKNGYRAFEKVVNHMTSEDVIDLIKQSGLKGRGGAGFLTGLKWSLM 77
Query: 126 PKVSD--GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRG 183
P ++D G YL+ NADE EPGT KDR +M PH+LLEG LI+ + + +YI++RG
Sbjct: 78 PPLNDEYGYTRYLLCNADEMEPGTYKDRFLMEKVPHQLLEGILISAFALSVTKSYIFLRG 137
Query: 184 EYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQ 243
EYVN + L+++ EA G LGKN CGS F++ IH GAG YICGEETAL+ SLEG++
Sbjct: 138 EYVNTERILKQSIIEATNYGYLGKNVCGSNLTFEIFIHTGAGRYICGEETALINSLEGRR 197
Query: 244 GKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSG 303
PR KPPFPA GL+G PT V NVET++ P I G W+ + ++GTK+ SG
Sbjct: 198 ANPRFKPPFPAYVGLWGKPTCVNNVETLSNVPAIFLNGVKWYKGLSKSLDTGTKMMGFSG 257
Query: 304 HVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDY 362
V P E I +E+ +R+ GG++ L PGG+S L+ KH+ DV MD+
Sbjct: 258 SVKFPGIWELPFGITAREIFERYAGGMKNN-KKLKVWQPGGASTSFLIDKHL--DVPMDF 314
Query: 363 DALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERL 422
+K V S LGTA + +D S +V + + F+ ESCG CTPCR+G W+ I++ L
Sbjct: 315 VNIKKVGSRLGTALAMAVDDSVSIVSLVRNIEEFFSRESCGFCTPCRDGLPWIVKILKVL 374
Query: 423 KVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELE 470
+ E+I++L+++ +Q+ G T CA A P++ +++FR E E
Sbjct: 375 EQKIGVPEDIEILEQLCEQLGPGRTFCAHAPGAIEPLKSALKYFRLEFE 423
>sp|P33901|NUOF_SALTY NADH-quinone oxidoreductase subunit F OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=nuoF PE=3 SV=2
Length = 445
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/381 (43%), Positives = 234/381 (61%), Gaps = 5/381 (1%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRH 156
D IV++VK +GL+GRGGAGF +GLKWS MPK YL+ NADE EPGT KDR +M
Sbjct: 48 DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107
Query: 157 DPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216
PH L+EG LI+ ++A YI++RGEY+ +L RA EA AGLLGKN G+G+DF
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167
Query: 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPT 276
++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA +G++G PT V NVET+ P
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227
Query: 277 ILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDN 336
IL G +W+ + + ++GTKL SG V P E +E+++ + GG+R G
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286
Query: 337 LLAVIPGGSSVPLLPK-HICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSY 395
A PGG+ L + H+ D+ M+++++ S LGTA + +D +V + L
Sbjct: 287 FKAWQPGGAGTDFLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEE 344
Query: 396 FYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAA 454
F+ ESCG CTPCR+G W I+ L+ G + +I+ L+++ + + G T CA A
Sbjct: 345 FFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGA 404
Query: 455 AWPVQGLIRHFRPELERRIKE 475
P+Q I++FR E E IK+
Sbjct: 405 VEPLQSAIKYFREEFEAGIKQ 425
>sp|Q9I0J7|NUOF_PSEAE NADH-quinone oxidoreductase subunit F OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=nuoF PE=3 SV=1
Length = 448
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/392 (43%), Positives = 231/392 (58%), Gaps = 7/392 (1%)
Query: 89 KDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTC 148
K L D IV VK SGL+GRGGAGFP+G+KW MPK YL+ NADE EP T
Sbjct: 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTW 107
Query: 149 KDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKN 208
KDR +M PH L+EG LI+ ++A YI++RGEYV+ +NL RA EA AAGLLGKN
Sbjct: 108 KDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Query: 209 ACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNV 268
GSG+DF++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA G++G PT V NV
Sbjct: 168 ILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNV 227
Query: 269 ETVAVSPTILRRGPDWFASFGR--KNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRH 326
ET+ P I+ G DW+ + R + GTKL SG V P E + +EL + +
Sbjct: 228 ETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDY 287
Query: 327 CGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTD 385
GG+R G+ L A PGG+ LLP+H+ D M + V + +GT + +D S +
Sbjct: 288 AGGMRDGF-QLKAWQPGGAGTGFLLPEHL--DAQMFAGGIAKVGTRMGTGLAMAVDDSIN 344
Query: 386 VVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI-EG 444
+V + + F+ ESCG CTPCR+G W ++ L+ G + +++ L+++ + G
Sbjct: 345 MVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPG 404
Query: 445 HTICALGDAAAWPVQGLIRHFRPELERRIKEH 476
T CA A P+ +++FR E E I
Sbjct: 405 KTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 436
>sp|O94500|NDUV1_SCHPO NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC18E5.10 PE=3 SV=1
Length = 452
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/418 (38%), Positives = 249/418 (59%), Gaps = 6/418 (1%)
Query: 63 RIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKW 122
R+F NL + A+ G++ +++ I+ V++S LRGRG GFP+G K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 123 SFMPKVSD---GRPS--YLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177
+ K + GR ++VNA E++ G+ KDR ++RH+PHK++EG +IA + ASA
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 178 YIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237
Y++IR +Y E +++ +AYA LLGKN G+ ++ IH GAG+YI GEE+AL++
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212
Query: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297
SL+G+ P + +GL+G PT V NVETV+ P I+++GP +F S GR NN GTK
Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRPNNRGTK 272
Query: 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357
LF +SG VN+P +E MSIPLK+LI+ + GGVRGGW+ L+ + PGG +L K+ C+
Sbjct: 273 LFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQ 332
Query: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417
V MD+D+LKA+ S LGT +VIV++ + +++ + FY +C C CR+G +
Sbjct: 333 VTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIE 392
Query: 418 IMERLKVGNAKLEEI-DMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
++ LK G+A L ++ DM + C GD+ + + R+F ++ R K
Sbjct: 393 TLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFRTK 450
>sp|Q8K9Y3|NUOF_BUCAP NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=nuoF PE=3 SV=1
Length = 447
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 236/396 (59%), Gaps = 6/396 (1%)
Query: 81 KRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNA 140
K G + K L + +V+ +K+SGL+GRGGAGF +GLKWS M K + + YL+ NA
Sbjct: 32 KNGYFSLKKALKTMCPEDVVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIRYLLCNA 91
Query: 141 DESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAY 200
DE EPGT KDR +M + PH+L+EG L++ + S YI++RGEY+ L+++ QEA
Sbjct: 92 DEMEPGTYKDRFLMENIPHQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKKSIQEAI 151
Query: 201 AAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYG 260
G +G N SG++F++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G
Sbjct: 152 NFGFIGSNILNSGFNFELFLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWG 211
Query: 261 CPTTVTNVETVAVSPTILRRGPDWFASFGRK-NNSGTKLFCVSGHVNKPCTVEEEMSIPL 319
PT V NVET++ P+I+ G +W+ + + +GTKL SG VN P E
Sbjct: 212 KPTCVNNVETLSNVPSIVLHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWELPFGTTA 271
Query: 320 KELIDRHCGGVRGGWDNLLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVI 378
+E+++ + G++ G L + PGG+ L+ KH+ D+ MD+ ++ S LGTA +
Sbjct: 272 REILEDYARGMKSGLF-LKSWQPGGAGTDFLIEKHL--DLPMDFTSIAKAGSRLGTAIAM 328
Query: 379 VMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEV 438
+D T+++ + + F+ ESCG CTPCREG W+ I+E L+ ++ L+ +
Sbjct: 329 AVDNKTNMISLVCNIEKFFSRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVKNLERL 388
Query: 439 TKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRI 473
+ G T CA A P+Q I++FR E E I
Sbjct: 389 CLDLSPGKTFCAHAPGAVEPLQSAIKYFRLEFEAGI 424
>sp|O66841|NUOF_AQUAE NADH-quinone oxidoreductase subunit F OS=Aquifex aeolicus (strain
VF5) GN=nuoF PE=3 SV=1
Length = 426
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 237/403 (58%), Gaps = 20/403 (4%)
Query: 80 MKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVN 139
+K G + + + + I++ V KS LRGRGGAGFP+G KW F V + P Y + N
Sbjct: 35 LKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFA--VQNPGPRYFICN 92
Query: 140 ADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEA 199
ADESEPGT KDR I+ DPH L+EG +I+ + A+ AYIYIRGEY L A +EA
Sbjct: 93 ADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEA 152
Query: 200 YAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLY 259
G LGKN GSG+D ++++ GAGAYICGEETAL+ESLEGK+G PRLKPP+P GL+
Sbjct: 153 KKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLW 212
Query: 260 GCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPL 319
G PT V NVET+A P I+ G + + G + +G KLF VSG V KP E M+ L
Sbjct: 213 GKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTL 272
Query: 320 KELIDRHCGGVRGGWDNLLAVIPGG----SSVPLLPKHICDDVLMDYDALKAVQSGL-GT 374
+E+I ++ GG G + AV G SS L D+ MDY L G GT
Sbjct: 273 REVIFKYAGGTLGN-KKVKAVFSGALDCFSSEEL-------DIPMDYSPL-----GFGGT 319
Query: 375 AAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDM 434
VIV+ + D+V+A +++ FY+HE+CGQCTPCR G ++E++ G A ++ +
Sbjct: 320 GTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEG 379
Query: 435 LQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHA 477
V + I+ +IC LG A ++ + F E E+ K+ A
Sbjct: 380 FDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSA 422
>sp|P57256|NUOF_BUCAI NADH-quinone oxidoreductase subunit F OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=nuoF PE=3 SV=1
Length = 444
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 228/380 (60%), Gaps = 7/380 (1%)
Query: 99 IVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSD--GRPSYLVVNADESEPGTCKDREIMRH 156
++N VK+SGL+GRGGAGF +GLKWS M + YL+ NADE EPGT KDR ++
Sbjct: 50 VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109
Query: 157 DPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216
PH+L+EG +++ + S AYI++RGEYV L+++ QEA G +G N GS ++
Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNILGSNFNI 169
Query: 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPT 276
++ +H GAG YICGEETAL+ SLEG++ PR KPPFPA GL+G PT V NVET++ P
Sbjct: 170 ELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVPC 229
Query: 277 ILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDN 336
I+ G W+ + + +++GTKL SG+V P E +E+++ + G++ G+ +
Sbjct: 230 IILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF-S 288
Query: 337 LLAVIPGGSSVP-LLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSY 395
L A PGG+ LL +H+ D+ MD+ + S LGTA + +D T +V + +
Sbjct: 289 LKAWQPGGAGTDFLLEEHL--DLPMDFKNISQAGSRLGTALSMAVDNKTSMVSLVYNIEK 346
Query: 396 FYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAA 454
F+ ESCG CTPCR+G W+ I++ L+ ++ L+++ + G T CA A
Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406
Query: 455 AWPVQGLIRHFRPELERRIK 474
P+Q I++FR E E I
Sbjct: 407 IEPLQSAIKYFRSEFESGIN 426
>sp|Q46507|HNDC_DESFR NADP-reducing hydrogenase subunit HndC OS=Desulfovibrio
fructosovorans GN=hndC PE=1 SV=1
Length = 490
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 239/422 (56%), Gaps = 11/422 (2%)
Query: 59 KDEDRIFTNLYGMHDP--FLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGF 116
K + RI T G DP RG K L + A+ +V+ VK+SGLRGRGGAGF
Sbjct: 8 KKQLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAE-VVDLVKRSGLRGRGGAGF 66
Query: 117 PSGLKWSF-MPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRAS 175
P+G+KW + +D + Y+V NADE +P DR ++ DPH ++E I G + A+
Sbjct: 67 PTGIKWGIALGNKADQK--YMVCNADEGDP-EFMDRAVLEGDPHSVVEAMAIGGYAIGAT 123
Query: 176 AAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETAL 235
+YIR EY K L++A +A GLLG+N GSG+DFD+ + YGAGA++CGEETAL
Sbjct: 124 RGTVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETAL 183
Query: 236 LESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSG 295
+ S+EGK+G+P KPPFPA +G + PT V NVET A P I+ G DWF+ G + G
Sbjct: 184 IRSMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKG 243
Query: 296 TKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGG-SSVPLLPKHI 354
TK+F ++G + +E M I L+E+I GG G AV GG S L K +
Sbjct: 244 TKVFALAGKIQNVGLIEVPMGISLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALANKDL 302
Query: 355 CDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGW 414
DV +DY++L A +S +G+ ++VMD+ +V F E+CG+CTPCR G+
Sbjct: 303 --DVAIDYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKR 360
Query: 415 LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIK 474
L+ I++R+ G ++D L+ +++ I+ +C LG P+ + F E E +
Sbjct: 361 LYEILDRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVD 420
Query: 475 EH 476
+
Sbjct: 421 DK 422
>sp|P22317|HOXF_CUPNH NAD-reducing hydrogenase HoxS subunit alpha OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=hoxF PE=1 SV=1
Length = 602
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 218/434 (50%), Gaps = 20/434 (4%)
Query: 49 PPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAM---KRGDWHRTKD--LVLKGADWIVNEV 103
P E + GL +D + + + KG + R D D L+LK + ++ +
Sbjct: 154 PAEIANPAGLPSQDIAYVDAMVESNVRTKGPVFFRGRTDLRSLLDQCLLLK-PEQVIETI 212
Query: 104 KKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLE 163
S LRGRGGAGF +GLKW + + ++ Y++ NADE EPGT KDR ++ P K+
Sbjct: 213 VDSRLRGRGGAGFSTGLKWR-LCRDAESEQKYVICNADEGEPGTFKDRVLLTRAPKKVFV 271
Query: 164 GCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACG-SGYDFDVHIHY 222
G +IA + +Y+RGEY + LER QE GLLG+ G +G+DFD+ I
Sbjct: 272 GMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGLLGRAIGGRAGFDFDIRIQM 331
Query: 223 GAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP 282
GAGAYICG+E+AL+ES EGK+G PR+KPPFP G G PT+V NVET A I+ G
Sbjct: 332 GAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTSVNNVETFAAVSRIMEEGA 391
Query: 283 DWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIP 342
DWF + G +++GT+L V+G +KP E E + L E++ + G D I
Sbjct: 392 DWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVL-----AMVGARDARAVQIS 446
Query: 343 GGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESC 402
G P C V D + A + A + + D+++ + F+ ESC
Sbjct: 447 G-------PSGECVSVAKDGERKLAYEDLSCNGAFTIFNCKRDLLEIVRDHMQFFVEESC 499
Query: 403 GQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 462
G C PCR G L +E + G A +++D + + + C LG + P+ +
Sbjct: 500 GICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRRTSRCGLGATSPKPILTTL 559
Query: 463 RHFRPELERRIKEH 476
F + ++ H
Sbjct: 560 EKFPEIYQNKLVRH 573
>sp|D5ARZ1|RNFC_RHOCB Electron transport complex protein rnfC OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=rnfC PE=3
SV=1
Length = 519
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 96/244 (39%), Gaps = 40/244 (16%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPG-TCKDREIMR 155
+ I +V +G+ G GGA FPS +K + K + L++N E EP TC DR +MR
Sbjct: 136 EEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYDL---TTLIINGAECEPYLTCDDR-LMR 191
Query: 156 HDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYD 215
++ +G I + ++ I + + R Y L GY
Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR-----YNRAL--------GYT 238
Query: 216 FDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSP 275
F +H+ Y G E L++ + G++ PA A V N+ T
Sbjct: 239 FKIHV--VPTQYPMGSEKHLVKMITGQE--------TPARALTADLGVVVHNIATAHAVH 288
Query: 276 TILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDRHCGGVRGGW 334
+R G A + VSGH + +P + + P+ E+I HCGG
Sbjct: 289 LAVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEIIA-HCGGFTEEP 337
Query: 335 DNLL 338
D LL
Sbjct: 338 DRLL 341
>sp|Q52716|RNFC_RHOCA Electron transport complex protein RnfC OS=Rhodobacter capsulatus
GN=rnfC PE=1 SV=1
Length = 519
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 96/244 (39%), Gaps = 40/244 (16%)
Query: 97 DWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPG-TCKDREIMR 155
+ I +V +G+ G GGA FPS +K + K + L++N E EP TC DR +MR
Sbjct: 136 EEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYDL---TTLIINGAECEPYLTCDDR-LMR 191
Query: 156 HDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYD 215
++ +G I + ++ I + + R Y L GY
Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR-----YNRAL--------GYT 238
Query: 216 FDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSP 275
F +H+ Y G E L++ + G++ PA A V N+ T
Sbjct: 239 FKIHV--VPTQYPMGSEKHLVKMITGQE--------TPARALTADLGVVVHNIATAHAVH 288
Query: 276 TILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDRHCGGVRGGW 334
+R G A + VSGH + +P + + P+ E+I HCGG
Sbjct: 289 LAVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEIIA-HCGGFTEEP 337
Query: 335 DNLL 338
D LL
Sbjct: 338 DRLL 341
>sp|Q7VNT4|RNFC_HAEDU Electron transport complex protein RnfC OS=Haemophilus ducreyi
(strain 35000HP / ATCC 700724) GN=rnfC PE=3 SV=1
Length = 702
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82 RGDW---HRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVV 138
+ +W H +D + +D I+ +V + G+ G GGA FP+ K S +D R L++
Sbjct: 123 KDEWIERHPIEDFLTLTSDQIIQKVYQYGIAGLGGAVFPTACKLSL----ADKRCKVLII 178
Query: 139 NADESEPG-TCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYI 181
N E EP TC DR +M+ +LLEG I +R I I
Sbjct: 179 NGAECEPYITCDDR-LMQDFTAELLEGIRILRYVLRPEEVVIAI 221
>sp|Q65U33|RNFC_MANSM Electron transport complex protein RnfC OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=rnfC PE=3 SV=1
Length = 723
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 90 DLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPG-TC 148
D + + A+ ++ ++ ++G+ G GGA FP+ K K + L++N E EP TC
Sbjct: 127 DFLSQSAEQLIEKIYQAGIAGLGGAVFPTAAKIDSAQK----KVKLLIINGAECEPYITC 182
Query: 149 KDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEA 199
DR +MR +P +++EG I +R I + ++++ A Q A
Sbjct: 183 DDR-LMRDNPDEIIEGIRILRYILRPEKVVIAVEDNKPEAVQSIKNALQGA 232
>sp|Q9KT88|RNFC_VIBCH Electron transport complex protein RnfC OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rnfC
PE=3 SV=2
Length = 774
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 103 VKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLL 162
++++G+ G GGAGFP+ K + R L++NA E EP D +MR H+++
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAHEII 195
Query: 163 EGCLI 167
+G I
Sbjct: 196 QGIEI 200
>sp|A6VQ42|RNFC_ACTSZ Electron transport complex protein RnfC OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=rnfC PE=3
SV=1
Length = 703
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 88 TKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPG- 146
T+D + ++ ++ ++G+ G GGA FP+G K + G+ L++N E EP
Sbjct: 125 TEDYFTHTPERLIEKIYRAGVAGLGGAVFPTGAKVD----AALGKVKLLIINGAECEPYI 180
Query: 147 TCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYI 181
TC DR +MR +++EG I +R I I
Sbjct: 181 TCDDR-LMRDYAAEIIEGVRILRYILRPEKVVIAI 214
>sp|P57215|RNFC_BUCAI Electron transport complex protein RnfC OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=rnfC PE=3
SV=1
Length = 473
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 84 DWHR---TKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNA 140
W R KD + ++ + +SG+ G GG FPS K F S R L+VNA
Sbjct: 77 QWIRLNPIKDYKKYAPEKLIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNA 132
Query: 141 DESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 186
ESEP D ++ + ++L GC I + I I+ + +
Sbjct: 133 VESEPYITSDNCLIYNHISEILIGCKIICWITKIKTVLIAIQEDNI 178
>sp|Q89AW8|RNFC_BUCBP Electron transport complex protein RnfC OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=rnfC PE=3 SV=1
Length = 505
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 99 IVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDP 158
++N + SG+ G G+GF + K + + G+ LVVNA ESEP D ++++
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKL----QCAVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203
Query: 159 HKLLEGCLIAGVGMRASAAYIYIRGEYV 186
++++GC I ++ I + E +
Sbjct: 204 KEIIDGCKILIWILKIKKILIVVSEEKI 231
>sp|B2U2C8|RNFC_SHIB3 Electron transport complex protein RnfC OS=Shigella boydii serotype
18 (strain CDC 3083-94 / BS512) GN=rnfC PE=3 SV=1
Length = 708
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 90 DLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCK 149
D + + ++ + + G+ G GGAGFP+G+K + + L++NA E EP
Sbjct: 126 DYRTRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITA 181
Query: 150 DREIMRHDPHKLLEGCLI 167
D +M+ +L+EG I
Sbjct: 182 DDRLMQDCAAQLVEGIRI 199
>sp|B5XWP9|RNFC_KLEP3 Electron transport complex protein RnfC OS=Klebsiella pneumoniae
(strain 342) GN=rnfC PE=3 SV=1
Length = 753
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 80 MKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVN 139
++R W D L+ + ++ + + G+ G GGAGFP+G K + + L++N
Sbjct: 119 IERDGW---SDYQLRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGSDKIKTLIIN 171
Query: 140 ADESEPGTCKDREIMRHDPHKLLEGCLI 167
A E EP D +M+ ++++G I
Sbjct: 172 AAECEPYITADDRLMQDCAAQIVDGIRI 199
>sp|A9MRW8|RNFC_SALAR Electron transport complex protein RnfC OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rnfC PE=3
SV=1
Length = 673
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 99 IVNEVKKSGLRGRGGAGFPSGLKWS-FMPKVSDGRPSYLVVNADESEPGTCKDREIMRHD 157
++ + + G+ G GGAGFP+G+K + K+ + L++NA E EP D +M+
Sbjct: 135 LIERIHQYGVAGLGGAGFPTGVKLQGGIDKI-----TTLIINAAECEPYITADDRLMQDC 189
Query: 158 PHKLLEGCLI 167
+++EG I
Sbjct: 190 AAQIVEGIRI 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,862,420
Number of Sequences: 539616
Number of extensions: 9742360
Number of successful extensions: 53675
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 51387
Number of HSP's gapped (non-prelim): 1744
length of query: 486
length of database: 191,569,459
effective HSP length: 121
effective length of query: 365
effective length of database: 126,275,923
effective search space: 46090711895
effective search space used: 46090711895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)