Query 011414
Match_columns 486
No_of_seqs 323 out of 1797
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 01:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 1E-67 2.2E-72 532.6 34.9 373 19-443 1-375 (438)
2 KOG4405 GDP dissociation inhib 100.0 2.5E-65 5.4E-70 487.3 18.9 415 19-481 5-458 (547)
3 PTZ00363 rab-GDP dissociation 100.0 7.5E-62 1.6E-66 497.0 41.0 375 19-444 1-377 (443)
4 KOG1439 RAB proteins geranylge 100.0 2.3E-56 5E-61 427.9 25.1 371 20-443 2-375 (440)
5 COG5044 MRS6 RAB proteins gera 100.0 7.4E-53 1.6E-57 399.0 25.3 369 19-444 3-375 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 2.5E-27 5.4E-32 250.5 29.7 344 25-426 1-378 (502)
7 COG1233 Phytoene dehydrogenase 100.0 7.3E-27 1.6E-31 244.5 24.1 260 20-336 1-279 (487)
8 TIGR02733 desat_CrtD C-3',4' d 100.0 1E-25 2.2E-30 237.6 31.0 341 23-426 2-377 (492)
9 TIGR02730 carot_isom carotene 99.9 1.3E-25 2.7E-30 236.7 30.1 342 23-424 1-375 (493)
10 TIGR00562 proto_IX_ox protopor 99.9 8.4E-24 1.8E-28 221.5 32.7 351 22-445 2-386 (462)
11 PLN02576 protoporphyrinogen ox 99.9 6.6E-23 1.4E-27 216.6 35.0 291 20-376 10-332 (496)
12 PRK07233 hypothetical protein; 99.9 5.2E-23 1.1E-27 213.6 32.9 348 24-445 1-356 (434)
13 PRK12416 protoporphyrinogen ox 99.9 5.4E-23 1.2E-27 215.3 31.4 325 23-422 2-357 (463)
14 PRK11883 protoporphyrinogen ox 99.9 1.3E-22 2.8E-27 211.7 29.2 325 24-423 2-352 (451)
15 COG1232 HemY Protoporphyrinoge 99.9 2.5E-22 5.4E-27 203.4 28.9 347 24-445 2-372 (444)
16 PRK07208 hypothetical protein; 99.9 2.1E-21 4.6E-26 204.2 33.9 353 19-445 1-385 (479)
17 PLN02612 phytoene desaturase 99.9 2.5E-21 5.4E-26 206.2 34.6 295 22-377 93-404 (567)
18 TIGR02731 phytoene_desat phyto 99.9 2.1E-21 4.6E-26 202.7 33.5 296 24-378 1-315 (453)
19 TIGR02732 zeta_caro_desat caro 99.9 2E-20 4.3E-25 195.6 26.9 268 24-342 1-289 (474)
20 PLN02487 zeta-carotene desatur 99.9 5.8E-20 1.3E-24 193.8 28.1 271 21-342 74-365 (569)
21 KOG4254 Phytoene desaturase [C 99.9 4.9E-21 1.1E-25 186.9 17.5 71 270-342 255-327 (561)
22 PLN02268 probable polyamine ox 99.8 3E-19 6.6E-24 185.6 21.7 277 23-379 1-294 (435)
23 TIGR03467 HpnE squalene-associ 99.8 5.1E-18 1.1E-22 175.3 29.6 276 36-376 1-287 (419)
24 PLN02529 lysine-specific histo 99.8 1.4E-17 2.9E-22 179.4 31.5 279 21-376 159-446 (738)
25 PLN02676 polyamine oxidase 99.8 2.3E-18 4.9E-23 180.3 24.4 285 20-378 24-327 (487)
26 PLN02568 polyamine oxidase 99.8 6.9E-18 1.5E-22 178.0 24.0 299 18-376 1-339 (539)
27 PLN02328 lysine-specific histo 99.8 7.5E-17 1.6E-21 174.4 31.4 282 21-377 237-527 (808)
28 PLN03000 amine oxidase 99.8 2.2E-16 4.7E-21 170.8 31.0 280 21-377 183-471 (881)
29 COG1231 Monoamine oxidase [Ami 99.8 3E-18 6.5E-23 169.9 14.8 99 271-377 201-300 (450)
30 PRK13977 myosin-cross-reactive 99.7 1.6E-15 3.4E-20 157.5 23.7 241 19-332 19-287 (576)
31 KOG1276 Protoporphyrinogen oxi 99.7 2E-14 4.4E-19 140.5 26.0 246 22-323 11-293 (491)
32 PLN02976 amine oxidase 99.7 3.6E-15 7.8E-20 165.6 22.1 105 269-378 926-1038(1713)
33 KOG0029 Amine oxidase [Seconda 99.7 2.9E-15 6.4E-20 155.6 19.9 111 272-389 212-323 (501)
34 PF01593 Amino_oxidase: Flavin 99.6 9.2E-15 2E-19 150.8 16.0 157 278-445 208-370 (450)
35 COG2907 Predicted NAD/FAD-bind 99.6 1.2E-13 2.6E-18 131.6 21.8 292 21-378 7-309 (447)
36 KOG0685 Flavin-containing amin 99.4 1.9E-11 4.1E-16 121.8 20.1 108 271-380 215-330 (498)
37 COG3349 Uncharacterized conser 99.4 3.5E-12 7.7E-17 129.3 13.8 249 24-331 2-268 (485)
38 COG2081 Predicted flavoprotein 99.3 1.3E-11 2.8E-16 121.1 13.5 59 271-332 102-161 (408)
39 TIGR00031 UDP-GALP_mutase UDP- 99.3 5.8E-11 1.3E-15 119.6 14.2 42 23-64 2-43 (377)
40 PF13450 NAD_binding_8: NAD(P) 99.3 1.1E-11 2.5E-16 93.3 6.4 41 27-67 1-41 (68)
41 PF01266 DAO: FAD dependent ox 99.2 7.1E-11 1.5E-15 118.9 13.4 60 271-333 136-198 (358)
42 PF03486 HI0933_like: HI0933-l 99.1 2.9E-10 6.2E-15 116.0 10.3 60 271-332 100-160 (409)
43 COG0579 Predicted dehydrogenas 99.1 1.6E-09 3.4E-14 109.8 13.9 61 271-333 142-206 (429)
44 PRK11728 hydroxyglutarate oxid 99.1 3.2E-09 7E-14 108.9 15.9 59 271-333 138-199 (393)
45 COG0562 Glf UDP-galactopyranos 99.1 1.1E-09 2.4E-14 104.1 11.0 100 22-163 1-101 (374)
46 TIGR03329 Phn_aa_oxid putative 99.0 1.7E-08 3.7E-13 105.7 19.4 58 271-333 172-232 (460)
47 TIGR01377 soxA_mon sarcosine o 99.0 2.8E-08 6E-13 101.4 17.7 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 98.9 3.4E-08 7.4E-13 103.7 16.9 57 274-332 126-186 (466)
49 PRK11101 glpA sn-glycerol-3-ph 98.9 2.7E-08 5.8E-13 106.2 16.0 60 270-332 138-205 (546)
50 PRK11259 solA N-methyltryptoph 98.9 2.8E-08 6.2E-13 101.2 13.7 58 271-332 138-198 (376)
51 PRK00711 D-amino acid dehydrog 98.9 9.8E-08 2.1E-12 98.7 17.8 60 270-332 189-251 (416)
52 PRK12845 3-ketosteroid-delta-1 98.8 2.8E-07 6E-12 98.6 20.8 44 18-62 12-55 (564)
53 PRK12409 D-amino acid dehydrog 98.8 1E-07 2.2E-12 98.5 16.8 40 23-62 2-41 (410)
54 PRK06481 fumarate reductase fl 98.8 3.5E-07 7.7E-12 96.8 19.2 42 21-62 60-101 (506)
55 PRK01747 mnmC bifunctional tRN 98.8 9E-08 1.9E-12 104.8 14.8 58 271-332 397-457 (662)
56 PF01946 Thi4: Thi4 family; PD 98.8 5.4E-09 1.2E-13 95.0 4.0 43 21-63 16-58 (230)
57 COG1635 THI4 Ribulose 1,5-bisp 98.8 5.7E-09 1.2E-13 94.2 3.8 42 21-62 29-70 (262)
58 TIGR01373 soxB sarcosine oxida 98.7 3.9E-07 8.4E-12 94.0 17.6 61 271-333 172-235 (407)
59 KOG2820 FAD-dependent oxidored 98.7 4.1E-07 9E-12 87.3 15.7 65 273-337 144-212 (399)
60 PTZ00383 malate:quinone oxidor 98.7 2.6E-07 5.7E-12 96.8 15.6 60 271-333 199-268 (497)
61 COG0578 GlpA Glycerol-3-phosph 98.7 1.8E-07 3.9E-12 97.0 12.9 48 17-64 7-54 (532)
62 COG3380 Predicted NAD/FAD-depe 98.6 6.1E-08 1.3E-12 90.3 6.8 46 23-68 2-47 (331)
63 COG0644 FixC Dehydrogenases (f 98.6 4.6E-08 1E-12 100.4 5.4 43 21-63 2-44 (396)
64 PF06100 Strep_67kDa_ant: Stre 98.6 2.6E-06 5.6E-11 86.9 17.6 250 23-332 3-268 (500)
65 TIGR00292 thiazole biosynthesi 98.5 8E-08 1.7E-12 92.1 5.2 41 21-61 20-60 (254)
66 PRK10157 putative oxidoreducta 98.5 9.7E-08 2.1E-12 99.0 5.6 40 21-60 4-43 (428)
67 PRK04176 ribulose-1,5-biphosph 98.5 9.8E-08 2.1E-12 91.8 5.1 41 21-61 24-64 (257)
68 PRK10015 oxidoreductase; Provi 98.5 1.2E-07 2.7E-12 98.2 5.4 41 20-60 3-43 (429)
69 PRK05249 soluble pyridine nucl 98.4 1.9E-07 4E-12 98.0 5.4 46 19-64 2-47 (461)
70 PRK07121 hypothetical protein; 98.4 3.4E-07 7.3E-12 96.8 6.3 42 21-62 19-60 (492)
71 PRK06115 dihydrolipoamide dehy 98.4 2.4E-07 5.2E-12 97.2 4.9 44 20-63 1-44 (466)
72 PRK07364 2-octaprenyl-6-methox 98.4 3.3E-07 7.1E-12 94.7 5.8 45 13-57 9-53 (415)
73 TIGR00275 flavoprotein, HI0933 98.4 3.5E-06 7.6E-11 86.6 12.9 57 272-332 97-154 (400)
74 PRK08010 pyridine nucleotide-d 98.4 3.1E-07 6.7E-12 95.8 5.0 44 20-63 1-45 (441)
75 PLN00093 geranylgeranyl diphos 98.4 4E-07 8.7E-12 94.7 5.7 42 14-55 31-72 (450)
76 PRK12266 glpD glycerol-3-phosp 98.4 4.5E-07 9.7E-12 96.1 5.7 44 19-62 3-46 (508)
77 PF01494 FAD_binding_3: FAD bi 98.4 3.3E-07 7.2E-12 92.0 4.5 36 22-57 1-36 (356)
78 PLN02172 flavin-containing mon 98.4 4.6E-07 9.9E-12 94.5 5.6 44 20-63 8-51 (461)
79 PF12831 FAD_oxidored: FAD dep 98.4 3.6E-07 7.8E-12 94.7 4.8 41 24-64 1-41 (428)
80 TIGR02485 CobZ_N-term precorri 98.3 5.1E-06 1.1E-10 86.4 13.2 61 272-332 116-177 (432)
81 COG2072 TrkA Predicted flavopr 98.3 4.8E-07 1E-11 93.9 5.3 50 19-68 5-55 (443)
82 PRK07251 pyridine nucleotide-d 98.3 4.3E-07 9.4E-12 94.6 5.0 43 20-62 1-44 (438)
83 PRK07494 2-octaprenyl-6-methox 98.3 5.4E-07 1.2E-11 92.3 5.3 40 18-57 3-42 (388)
84 PRK06467 dihydrolipoamide dehy 98.3 6.5E-07 1.4E-11 94.0 5.4 44 20-63 2-45 (471)
85 PRK06370 mercuric reductase; V 98.3 6.6E-07 1.4E-11 93.9 5.4 44 19-63 2-45 (463)
86 PRK06292 dihydrolipoamide dehy 98.3 6.2E-07 1.3E-11 94.1 5.1 43 20-63 1-43 (460)
87 TIGR02032 GG-red-SF geranylger 98.3 6.7E-07 1.5E-11 87.5 5.1 37 23-59 1-37 (295)
88 PRK13369 glycerol-3-phosphate 98.3 7.5E-07 1.6E-11 94.3 5.7 44 19-62 3-46 (502)
89 PRK06116 glutathione reductase 98.3 6.1E-07 1.3E-11 93.8 4.8 42 21-63 3-44 (450)
90 PRK08013 oxidoreductase; Provi 98.3 7.8E-07 1.7E-11 91.5 5.0 38 20-57 1-38 (400)
91 PTZ00058 glutathione reductase 98.3 1E-06 2.2E-11 93.9 5.9 54 10-64 35-89 (561)
92 TIGR01350 lipoamide_DH dihydro 98.3 8.2E-07 1.8E-11 93.2 5.0 42 22-64 1-42 (461)
93 TIGR03378 glycerol3P_GlpB glyc 98.2 4.2E-05 9.1E-10 77.9 16.8 56 279-336 263-321 (419)
94 KOG2844 Dimethylglycine dehydr 98.2 1.9E-05 4.2E-10 82.2 14.3 58 271-331 176-236 (856)
95 PRK09126 hypothetical protein; 98.2 9.9E-07 2.1E-11 90.4 5.1 36 22-57 3-38 (392)
96 TIGR01424 gluta_reduc_2 glutat 98.2 9.5E-07 2.1E-11 92.2 4.8 41 22-63 2-42 (446)
97 PRK07818 dihydrolipoamide dehy 98.2 1.1E-06 2.5E-11 92.2 5.4 44 20-64 2-45 (466)
98 PRK08849 2-octaprenyl-3-methyl 98.2 1.1E-06 2.3E-11 90.0 5.0 36 20-55 1-36 (384)
99 PRK05192 tRNA uridine 5-carbox 98.2 1.1E-06 2.4E-11 93.0 5.1 41 20-60 2-43 (618)
100 PRK06416 dihydrolipoamide dehy 98.2 1.2E-06 2.5E-11 92.1 5.1 43 21-64 3-45 (462)
101 PRK08773 2-octaprenyl-3-methyl 98.2 1.3E-06 2.7E-11 89.7 5.2 53 279-334 113-166 (392)
102 PLN02463 lycopene beta cyclase 98.2 1.5E-06 3.3E-11 90.1 5.9 47 9-55 15-61 (447)
103 PRK07045 putative monooxygenas 98.2 1.2E-06 2.6E-11 89.7 5.1 39 19-57 2-40 (388)
104 PF00890 FAD_binding_2: FAD bi 98.2 9.8E-07 2.1E-11 91.3 4.4 54 277-332 139-197 (417)
105 TIGR01421 gluta_reduc_1 glutat 98.2 1.2E-06 2.6E-11 91.5 5.0 41 22-63 2-42 (450)
106 PRK05976 dihydrolipoamide dehy 98.2 1.3E-06 2.9E-11 91.8 5.3 43 21-64 3-45 (472)
107 PRK08850 2-octaprenyl-6-methox 98.2 1.2E-06 2.6E-11 90.3 4.8 36 19-54 1-36 (405)
108 PF13738 Pyr_redox_3: Pyridine 98.2 9.6E-07 2.1E-11 81.7 3.6 38 26-63 1-39 (203)
109 PRK06184 hypothetical protein; 98.2 1.7E-06 3.6E-11 91.8 5.5 45 20-64 1-47 (502)
110 COG3573 Predicted oxidoreducta 98.2 1.8E-06 3.9E-11 82.7 5.0 43 19-61 2-46 (552)
111 PRK08020 ubiF 2-octaprenyl-3-m 98.2 1.4E-06 3.1E-11 89.2 4.8 38 19-56 2-39 (391)
112 TIGR02023 BchP-ChlP geranylger 98.2 1.9E-06 4.1E-11 88.3 5.6 32 23-54 1-32 (388)
113 PLN02661 Putative thiazole syn 98.2 1.5E-06 3.3E-11 86.0 4.7 38 22-59 92-130 (357)
114 PF00732 GMC_oxred_N: GMC oxid 98.2 1.3E-06 2.7E-11 86.1 4.2 39 23-61 1-40 (296)
115 PRK07236 hypothetical protein; 98.2 1.9E-06 4.1E-11 88.2 5.3 38 19-56 3-40 (386)
116 TIGR01292 TRX_reduct thioredox 98.2 1.9E-06 4E-11 84.7 4.9 40 23-63 1-40 (300)
117 PRK13748 putative mercuric red 98.2 1.7E-06 3.7E-11 93.1 5.0 42 21-63 97-138 (561)
118 TIGR02028 ChlP geranylgeranyl 98.2 2E-06 4.3E-11 88.4 5.2 37 23-59 1-37 (398)
119 PRK12837 3-ketosteroid-delta-1 98.2 1.9E-06 4.1E-11 91.5 5.2 41 21-62 6-46 (513)
120 PRK12834 putative FAD-binding 98.2 2E-06 4.4E-11 92.1 5.4 42 21-62 3-46 (549)
121 PRK14694 putative mercuric red 98.2 2.1E-06 4.5E-11 90.3 5.3 44 19-63 3-46 (468)
122 PRK06327 dihydrolipoamide dehy 98.2 2.1E-06 4.5E-11 90.4 5.4 44 21-64 3-52 (475)
123 TIGR03315 Se_ygfK putative sel 98.1 2.7E-06 5.8E-11 95.2 6.3 44 20-63 535-578 (1012)
124 TIGR01813 flavo_cyto_c flavocy 98.1 2.1E-06 4.5E-11 89.5 5.1 53 279-332 130-186 (439)
125 PRK08163 salicylate hydroxylas 98.1 2.1E-06 4.6E-11 88.1 5.1 37 21-57 3-39 (396)
126 PRK12842 putative succinate de 98.1 2.5E-06 5.5E-11 91.8 5.6 44 19-62 6-49 (574)
127 COG0665 DadA Glycine/D-amino a 98.1 2.5E-06 5.5E-11 87.1 5.3 59 271-333 145-207 (387)
128 TIGR01988 Ubi-OHases Ubiquinon 98.1 2.1E-06 4.5E-11 87.7 4.6 53 279-334 106-160 (385)
129 TIGR03143 AhpF_homolog putativ 98.1 2.4E-06 5.2E-11 91.5 5.2 42 21-63 3-44 (555)
130 PRK06185 hypothetical protein; 98.1 2.5E-06 5.4E-11 88.0 5.1 37 20-56 4-40 (407)
131 PRK06834 hypothetical protein; 98.1 2.7E-06 5.9E-11 89.7 5.4 45 20-64 1-48 (488)
132 KOG1399 Flavin-containing mono 98.1 2.5E-06 5.5E-11 87.7 4.9 45 20-64 4-48 (448)
133 PLN02985 squalene monooxygenas 98.1 3.3E-06 7.1E-11 89.4 5.9 42 15-56 36-77 (514)
134 PRK07608 ubiquinone biosynthes 98.1 2.6E-06 5.7E-11 87.2 5.0 37 22-58 5-41 (388)
135 COG1148 HdrA Heterodisulfide r 98.1 2.3E-06 5.1E-11 85.8 4.3 44 22-65 124-167 (622)
136 TIGR01790 carotene-cycl lycope 98.1 2.6E-06 5.7E-11 87.2 4.9 37 24-60 1-37 (388)
137 TIGR03364 HpnW_proposed FAD de 98.1 3.2E-06 6.9E-11 85.8 5.3 34 23-56 1-34 (365)
138 KOG1298 Squalene monooxygenase 98.1 2.9E-06 6.3E-11 82.8 4.5 36 19-54 42-77 (509)
139 PRK07190 hypothetical protein; 98.1 3.1E-06 6.8E-11 89.1 5.2 38 20-57 3-40 (487)
140 PRK05714 2-octaprenyl-3-methyl 98.1 2.5E-06 5.5E-11 87.9 4.5 52 280-334 113-165 (405)
141 PRK12831 putative oxidoreducta 98.1 3.8E-06 8.3E-11 87.9 5.7 44 19-62 137-180 (464)
142 PLN02697 lycopene epsilon cycl 98.1 4.5E-06 9.7E-11 88.1 6.2 39 19-57 105-143 (529)
143 PRK05732 2-octaprenyl-6-methox 98.1 2.9E-06 6.2E-11 87.0 4.6 35 20-54 1-38 (395)
144 COG0492 TrxB Thioredoxin reduc 98.1 3.3E-06 7.2E-11 82.9 4.8 46 20-65 1-46 (305)
145 TIGR02053 MerA mercuric reduct 98.1 3.2E-06 7E-11 88.7 5.0 40 23-63 1-40 (463)
146 PRK14727 putative mercuric red 98.1 3.1E-06 6.7E-11 89.2 4.8 45 20-64 14-58 (479)
147 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 3.2E-06 6.8E-11 86.7 4.6 35 22-56 2-36 (390)
148 PLN02464 glycerol-3-phosphate 98.1 3.6E-06 7.8E-11 91.2 5.3 41 20-60 69-109 (627)
149 PRK12844 3-ketosteroid-delta-1 98.1 3.8E-06 8.3E-11 89.9 5.3 41 21-61 5-45 (557)
150 PTZ00367 squalene epoxidase; P 98.1 3.9E-06 8.5E-11 89.5 5.2 40 16-55 27-66 (567)
151 PRK07057 sdhA succinate dehydr 98.1 4.4E-06 9.5E-11 90.1 5.5 46 16-61 6-51 (591)
152 COG1249 Lpd Pyruvate/2-oxoglut 98.0 4.4E-06 9.5E-11 86.3 5.1 45 20-64 2-46 (454)
153 PF04820 Trp_halogenase: Trypt 98.0 5.2E-05 1.1E-09 79.1 13.1 53 279-333 154-207 (454)
154 TIGR01984 UbiH 2-polyprenyl-6- 98.0 3.7E-06 8E-11 85.9 4.5 53 279-334 105-159 (382)
155 PRK06847 hypothetical protein; 98.0 5E-06 1.1E-10 84.7 5.3 51 279-332 107-157 (375)
156 PRK12835 3-ketosteroid-delta-1 98.0 4.4E-06 9.5E-11 89.9 5.0 41 21-61 10-50 (584)
157 PRK06126 hypothetical protein; 98.0 4.8E-06 1E-10 89.3 5.3 38 19-56 4-41 (545)
158 PRK06617 2-octaprenyl-6-methox 98.0 4.4E-06 9.4E-11 85.2 4.6 33 23-55 2-34 (374)
159 PTZ00052 thioredoxin reductase 98.0 4.5E-06 9.8E-11 88.3 4.8 50 280-332 223-272 (499)
160 PRK07843 3-ketosteroid-delta-1 98.0 6E-06 1.3E-10 88.5 5.7 43 20-62 5-47 (557)
161 PRK09853 putative selenate red 98.0 6.8E-06 1.5E-10 91.7 6.3 44 20-63 537-580 (1019)
162 COG0654 UbiH 2-polyprenyl-6-me 98.0 4.5E-06 9.8E-11 85.5 4.6 54 278-334 103-159 (387)
163 PRK12839 hypothetical protein; 98.0 6E-06 1.3E-10 88.6 5.7 45 19-63 5-49 (572)
164 PRK08641 sdhA succinate dehydr 98.0 5.5E-06 1.2E-10 89.3 5.3 40 21-60 2-41 (589)
165 PRK07803 sdhA succinate dehydr 98.0 5.8E-06 1.3E-10 89.7 5.5 41 19-59 5-45 (626)
166 PRK06753 hypothetical protein; 98.0 5.3E-06 1.2E-10 84.4 4.7 35 23-57 1-35 (373)
167 PLN02507 glutathione reductase 98.0 6E-06 1.3E-10 87.3 5.2 52 279-333 244-295 (499)
168 PRK06452 sdhA succinate dehydr 98.0 6.4E-06 1.4E-10 88.4 5.4 52 279-332 136-192 (566)
169 PRK12809 putative oxidoreducta 98.0 7.7E-06 1.7E-10 89.1 6.0 49 14-62 302-350 (639)
170 PRK08958 sdhA succinate dehydr 98.0 6.8E-06 1.5E-10 88.5 5.6 43 18-60 3-45 (588)
171 PRK07804 L-aspartate oxidase; 98.0 7.6E-06 1.6E-10 87.4 5.8 41 20-60 14-54 (541)
172 PRK12779 putative bifunctional 98.0 5.9E-06 1.3E-10 93.1 5.2 42 21-62 305-346 (944)
173 PRK08243 4-hydroxybenzoate 3-m 98.0 5.7E-06 1.2E-10 84.9 4.6 35 22-56 2-36 (392)
174 PRK12769 putative oxidoreducta 98.0 8E-06 1.7E-10 89.3 5.9 43 20-62 325-367 (654)
175 PRK08244 hypothetical protein; 98.0 6.2E-06 1.3E-10 87.3 4.9 43 22-64 2-46 (493)
176 TIGR01989 COQ6 Ubiquinone bios 98.0 5.7E-06 1.2E-10 86.2 4.5 34 23-56 1-38 (437)
177 PTZ00306 NADH-dependent fumara 98.0 7.5E-06 1.6E-10 94.8 5.8 43 20-62 407-449 (1167)
178 PRK08132 FAD-dependent oxidore 98.0 1E-05 2.2E-10 86.8 6.4 44 21-64 22-67 (547)
179 PRK05257 malate:quinone oxidor 98.0 6.6E-06 1.4E-10 86.5 4.8 44 19-62 2-47 (494)
180 PRK06183 mhpA 3-(3-hydroxyphen 98.0 8E-06 1.7E-10 87.4 5.5 40 20-59 8-47 (538)
181 PRK09078 sdhA succinate dehydr 98.0 7.7E-06 1.7E-10 88.3 5.4 53 279-332 149-206 (598)
182 PRK11445 putative oxidoreducta 98.0 6.7E-06 1.4E-10 83.1 4.6 35 22-57 1-35 (351)
183 PRK07333 2-octaprenyl-6-methox 98.0 6.2E-06 1.4E-10 84.8 4.4 51 279-332 111-161 (403)
184 TIGR01316 gltA glutamate synth 98.0 1.1E-05 2.3E-10 84.4 6.2 44 19-62 130-173 (449)
185 PRK07538 hypothetical protein; 98.0 7E-06 1.5E-10 84.8 4.8 35 23-57 1-35 (413)
186 PTZ00139 Succinate dehydrogena 98.0 8.3E-06 1.8E-10 88.3 5.4 53 279-332 166-223 (617)
187 TIGR01320 mal_quin_oxido malat 98.0 6.4E-06 1.4E-10 86.5 4.4 62 270-333 166-235 (483)
188 TIGR01372 soxA sarcosine oxida 97.9 9.5E-06 2.1E-10 92.5 5.8 43 21-63 162-204 (985)
189 TIGR01789 lycopene_cycl lycope 97.9 8.7E-06 1.9E-10 82.7 4.9 37 24-60 1-39 (370)
190 PRK07395 L-aspartate oxidase; 97.9 8.8E-06 1.9E-10 87.0 5.1 42 18-60 5-46 (553)
191 TIGR01423 trypano_reduc trypan 97.9 8.7E-06 1.9E-10 85.7 5.0 52 279-332 231-282 (486)
192 PRK02106 choline dehydrogenase 97.9 9.2E-06 2E-10 87.3 5.2 38 19-56 2-40 (560)
193 PRK06134 putative FAD-binding 97.9 1.1E-05 2.5E-10 86.8 5.8 45 19-63 9-53 (581)
194 PRK12775 putative trifunctiona 97.9 1E-05 2.3E-10 91.9 5.7 44 20-63 428-471 (1006)
195 PRK06175 L-aspartate oxidase; 97.9 9.1E-06 2E-10 84.4 4.9 58 273-332 121-183 (433)
196 KOG2614 Kynurenine 3-monooxyge 97.9 1.1E-05 2.3E-10 80.2 5.0 39 22-60 2-40 (420)
197 PLN00128 Succinate dehydrogena 97.9 9.5E-06 2.1E-10 88.0 5.1 41 21-61 49-89 (635)
198 PRK07588 hypothetical protein; 97.9 9.7E-06 2.1E-10 83.1 4.7 34 23-56 1-34 (391)
199 PRK07573 sdhA succinate dehydr 97.9 1.1E-05 2.3E-10 87.8 5.2 40 21-60 34-73 (640)
200 PLN02546 glutathione reductase 97.9 1.1E-05 2.3E-10 86.1 5.1 45 20-64 77-130 (558)
201 PRK15317 alkyl hydroperoxide r 97.9 1.2E-05 2.7E-10 85.4 5.3 41 20-62 209-249 (517)
202 PF05834 Lycopene_cycl: Lycope 97.9 1.2E-05 2.6E-10 81.9 4.8 34 24-57 1-36 (374)
203 PRK05945 sdhA succinate dehydr 97.9 1E-05 2.3E-10 87.0 4.6 58 273-332 128-191 (575)
204 PRK08626 fumarate reductase fl 97.9 1.2E-05 2.6E-10 87.6 5.1 52 279-332 158-214 (657)
205 PRK12810 gltD glutamate syntha 97.9 1.5E-05 3.2E-10 83.8 5.6 43 20-62 141-183 (471)
206 PRK05868 hypothetical protein; 97.9 1.5E-05 3.2E-10 81.3 5.1 35 23-57 2-36 (372)
207 PRK06069 sdhA succinate dehydr 97.9 1.4E-05 3.1E-10 86.1 5.2 43 19-61 2-47 (577)
208 PF00743 FMO-like: Flavin-bind 97.9 1.2E-05 2.6E-10 85.2 4.5 40 24-63 3-42 (531)
209 TIGR02462 pyranose_ox pyranose 97.9 1.4E-05 3.1E-10 84.3 5.0 39 23-61 1-39 (544)
210 PLN02815 L-aspartate oxidase 97.9 1.4E-05 3.1E-10 85.9 4.9 39 21-60 28-66 (594)
211 PRK10262 thioredoxin reductase 97.9 1.5E-05 3.3E-10 79.4 4.8 42 21-63 5-46 (321)
212 PRK12778 putative bifunctional 97.8 1.9E-05 4.2E-10 87.8 5.9 43 20-62 429-471 (752)
213 PRK05335 tRNA (uracil-5-)-meth 97.8 1.6E-05 3.4E-10 80.9 4.7 37 23-59 3-39 (436)
214 TIGR01812 sdhA_frdA_Gneg succi 97.8 1.6E-05 3.4E-10 85.7 5.0 51 280-332 130-185 (566)
215 PTZ00153 lipoamide dehydrogena 97.8 1.7E-05 3.8E-10 85.8 5.2 44 21-64 115-159 (659)
216 PRK12843 putative FAD-binding 97.8 2.7E-05 5.8E-10 83.9 6.4 42 21-62 15-56 (578)
217 PRK13339 malate:quinone oxidor 97.8 1.9E-05 4.1E-10 82.8 5.1 42 21-62 5-48 (497)
218 TIGR01318 gltD_gamma_fam gluta 97.8 2.5E-05 5.5E-10 81.9 6.1 43 20-62 139-181 (467)
219 PRK08294 phenol 2-monooxygenas 97.8 1.8E-05 4E-10 85.9 5.1 45 20-64 30-77 (634)
220 PRK06475 salicylate hydroxylas 97.8 1.8E-05 3.9E-10 81.4 4.8 35 23-57 3-37 (400)
221 TIGR03140 AhpF alkyl hydropero 97.8 2.1E-05 4.5E-10 83.6 5.3 41 20-62 210-250 (515)
222 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 1.8E-05 4E-10 80.8 4.6 38 24-61 2-39 (433)
223 PLN02852 ferredoxin-NADP+ redu 97.8 2.5E-05 5.5E-10 81.6 5.6 43 21-63 25-69 (491)
224 TIGR00551 nadB L-aspartate oxi 97.8 2.1E-05 4.6E-10 83.0 5.1 52 279-332 128-183 (488)
225 PRK12814 putative NADPH-depend 97.8 2.6E-05 5.6E-10 85.1 5.9 42 21-62 192-233 (652)
226 PRK11749 dihydropyrimidine deh 97.8 3E-05 6.6E-10 81.2 6.1 43 20-62 138-180 (457)
227 PRK06996 hypothetical protein; 97.8 2.1E-05 4.5E-10 80.9 4.8 39 18-56 7-49 (398)
228 PRK08071 L-aspartate oxidase; 97.8 2.2E-05 4.9E-10 83.2 5.0 40 21-61 2-41 (510)
229 PF01134 GIDA: Glucose inhibit 97.8 1.8E-05 3.9E-10 79.6 4.0 51 280-332 96-146 (392)
230 PRK06854 adenylylsulfate reduc 97.8 2.4E-05 5.1E-10 84.7 5.0 39 21-59 10-50 (608)
231 PLN02927 antheraxanthin epoxid 97.8 2.3E-05 5E-10 84.4 4.8 35 21-55 80-114 (668)
232 PF06039 Mqo: Malate:quinone o 97.8 0.00092 2E-08 67.9 15.6 61 271-333 169-239 (488)
233 KOG2853 Possible oxidoreductas 97.7 2.5E-05 5.4E-10 75.2 4.1 40 21-60 85-128 (509)
234 TIGR03219 salicylate_mono sali 97.7 3E-05 6.6E-10 80.1 5.1 36 24-59 2-38 (414)
235 COG1053 SdhA Succinate dehydro 97.7 3.3E-05 7.2E-10 82.0 5.3 46 18-63 2-47 (562)
236 PRK09231 fumarate reductase fl 97.7 3E-05 6.5E-10 83.5 4.9 41 21-61 3-45 (582)
237 PRK06263 sdhA succinate dehydr 97.7 3.2E-05 6.9E-10 82.8 4.9 53 279-332 134-191 (543)
238 PRK08275 putative oxidoreducta 97.7 3.2E-05 6.9E-10 83.0 4.8 53 279-332 137-194 (554)
239 TIGR01438 TGR thioredoxin and 97.7 3.5E-05 7.6E-10 81.2 4.9 42 22-63 2-51 (484)
240 COG3075 GlpB Anaerobic glycero 97.7 3.2E-05 6.9E-10 74.3 4.1 56 280-337 259-317 (421)
241 PRK05329 anaerobic glycerol-3- 97.7 3.8E-05 8.3E-10 78.9 4.9 51 280-332 260-312 (422)
242 PRK08205 sdhA succinate dehydr 97.7 3.9E-05 8.5E-10 82.7 5.2 53 279-332 140-200 (583)
243 KOG2415 Electron transfer flav 97.7 3.3E-05 7.1E-10 76.3 4.0 57 21-77 75-144 (621)
244 COG2509 Uncharacterized FAD-de 97.7 0.0012 2.5E-08 66.7 14.8 56 279-336 173-228 (486)
245 TIGR01176 fum_red_Fp fumarate 97.7 3.9E-05 8.5E-10 82.5 4.8 40 22-61 3-44 (580)
246 PRK09077 L-aspartate oxidase; 97.7 4.5E-05 9.7E-10 81.5 5.2 40 20-60 6-45 (536)
247 TIGR01317 GOGAT_sm_gam glutama 97.7 6.3E-05 1.4E-09 79.3 6.0 42 21-62 142-183 (485)
248 PRK08401 L-aspartate oxidase; 97.7 4.5E-05 9.8E-10 80.0 5.0 50 279-332 120-169 (466)
249 COG2303 BetA Choline dehydroge 97.6 5.4E-05 1.2E-09 80.7 4.8 36 19-54 4-39 (542)
250 PF07992 Pyr_redox_2: Pyridine 97.6 6.8E-05 1.5E-09 69.0 4.6 33 24-56 1-33 (201)
251 PRK12771 putative glutamate sy 97.6 9.3E-05 2E-09 79.7 6.1 42 21-62 136-177 (564)
252 PRK06912 acoL dihydrolipoamide 97.6 7.1E-05 1.5E-09 78.5 4.9 39 24-63 2-40 (458)
253 KOG0399 Glutamate synthase [Am 97.5 8.8E-05 1.9E-09 81.0 5.1 56 7-63 1771-1826(2142)
254 PRK12770 putative glutamate sy 97.5 0.00011 2.3E-09 74.4 5.5 41 22-62 18-58 (352)
255 COG0493 GltD NADPH-dependent g 97.5 0.00012 2.6E-09 75.9 5.6 48 16-63 117-164 (457)
256 PLN02785 Protein HOTHEAD 97.5 0.0001 2.2E-09 79.2 5.3 36 20-56 53-88 (587)
257 PF00070 Pyr_redox: Pyridine n 97.5 0.00015 3.3E-09 56.3 4.9 35 24-58 1-35 (80)
258 PRK06567 putative bifunctional 97.5 0.00013 2.9E-09 80.7 6.2 41 20-60 381-421 (1028)
259 KOG1335 Dihydrolipoamide dehyd 97.5 8.5E-05 1.9E-09 72.8 3.9 50 14-64 32-81 (506)
260 TIGR00136 gidA glucose-inhibit 97.5 0.00012 2.7E-09 77.6 5.1 38 23-60 1-38 (617)
261 TIGR01810 betA choline dehydro 97.5 9.2E-05 2E-09 79.1 4.2 33 24-56 1-34 (532)
262 PTZ00188 adrenodoxin reductase 97.5 0.00015 3.2E-09 75.0 5.5 44 21-64 38-82 (506)
263 TIGR02061 aprA adenosine phosp 97.5 0.00012 2.6E-09 79.0 5.0 34 24-57 1-38 (614)
264 PRK07846 mycothione reductase; 97.4 0.00013 2.7E-09 76.4 4.7 40 22-64 1-40 (451)
265 TIGR03452 mycothione_red mycot 97.4 0.00013 2.9E-09 76.2 4.6 40 22-64 2-41 (452)
266 PRK07512 L-aspartate oxidase; 97.4 0.00014 3E-09 77.3 4.6 52 279-332 136-191 (513)
267 PRK13800 putative oxidoreducta 97.4 0.00018 3.8E-09 81.5 5.8 36 21-56 12-47 (897)
268 TIGR01811 sdhA_Bsu succinate d 97.4 0.00013 2.7E-09 79.0 4.3 36 25-60 1-36 (603)
269 PRK13984 putative oxidoreducta 97.4 0.0002 4.3E-09 77.8 5.6 43 20-62 281-323 (604)
270 PRK07845 flavoprotein disulfid 97.4 0.00018 4E-09 75.5 5.0 52 279-333 218-269 (466)
271 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00018 4E-09 80.0 4.7 34 24-57 2-37 (765)
272 COG0445 GidA Flavin-dependent 97.2 0.00026 5.6E-09 72.8 3.9 35 20-54 2-36 (621)
273 COG4716 Myosin-crossreactive a 97.2 0.003 6.5E-08 62.0 10.7 44 21-64 21-68 (587)
274 KOG2665 Predicted FAD-dependen 97.1 0.00035 7.6E-09 66.9 3.3 46 17-62 43-90 (453)
275 KOG1238 Glucose dehydrogenase/ 96.9 0.0011 2.3E-08 69.9 5.4 39 19-57 54-93 (623)
276 KOG2311 NAD/FAD-utilizing prot 96.9 0.00097 2.1E-08 67.3 4.4 47 8-54 12-60 (679)
277 COG0029 NadB Aspartate oxidase 96.9 0.001 2.3E-08 67.8 4.3 33 24-57 9-41 (518)
278 KOG2404 Fumarate reductase, fl 96.8 0.0013 2.8E-08 63.2 4.5 39 24-62 11-49 (477)
279 PRK09897 hypothetical protein; 96.8 0.0013 2.7E-08 69.8 4.8 38 23-60 2-42 (534)
280 PRK09754 phenylpropionate diox 96.8 0.0016 3.4E-08 67.0 5.1 51 280-334 187-237 (396)
281 KOG4716 Thioredoxin reductase 96.7 0.0013 2.9E-08 63.5 3.7 33 21-53 18-50 (503)
282 KOG2960 Protein involved in th 96.7 0.00051 1.1E-08 62.1 0.7 41 22-62 76-118 (328)
283 PRK09564 coenzyme A disulfide 96.6 0.0018 3.9E-08 67.6 4.3 51 279-333 191-241 (444)
284 PTZ00318 NADH dehydrogenase-li 96.6 0.0026 5.6E-08 66.0 5.0 48 280-334 229-276 (424)
285 COG0446 HcaD Uncharacterized N 96.4 0.003 6.5E-08 64.7 4.5 40 23-62 137-176 (415)
286 PRK13512 coenzyme A disulfide 96.4 0.0036 7.9E-08 65.2 4.7 48 279-333 189-236 (438)
287 TIGR02352 thiamin_ThiO glycine 96.3 0.015 3.3E-07 57.9 8.3 60 271-333 126-188 (337)
288 KOG0405 Pyridine nucleotide-di 96.3 0.005 1.1E-07 60.0 4.4 44 21-64 19-62 (478)
289 COG1206 Gid NAD(FAD)-utilizing 96.2 0.0046 9.9E-08 59.8 4.0 40 22-61 3-42 (439)
290 KOG3855 Monooxygenase involved 96.2 0.0052 1.1E-07 61.3 4.4 46 15-60 29-80 (481)
291 KOG0042 Glycerol-3-phosphate d 95.9 0.0041 8.9E-08 63.9 2.1 39 22-60 67-105 (680)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.011 2.3E-07 53.9 4.0 33 24-56 2-34 (185)
293 PF13454 NAD_binding_9: FAD-NA 95.5 0.015 3.2E-07 51.4 4.0 31 26-56 1-36 (156)
294 TIGR03169 Nterm_to_SelD pyridi 95.5 0.015 3.2E-07 59.0 4.4 49 280-335 192-240 (364)
295 COG1252 Ndh NADH dehydrogenase 95.4 0.019 4.2E-07 58.3 4.8 46 279-331 209-255 (405)
296 KOG2852 Possible oxidoreductas 95.2 0.013 2.9E-07 55.7 2.6 41 22-62 10-56 (380)
297 PF02737 3HCDH_N: 3-hydroxyacy 95.1 0.026 5.6E-07 51.2 4.3 32 25-56 2-33 (180)
298 PRK09754 phenylpropionate diox 95.1 0.024 5.1E-07 58.3 4.5 39 23-61 145-183 (396)
299 KOG1800 Ferredoxin/adrenodoxin 95.0 0.031 6.7E-07 55.3 4.7 44 21-64 19-64 (468)
300 TIGR03197 MnmC_Cterm tRNA U-34 95.0 0.059 1.3E-06 55.0 7.0 58 271-332 124-184 (381)
301 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.03 6.4E-07 49.6 4.1 32 24-55 1-32 (157)
302 COG4529 Uncharacterized protei 94.8 0.036 7.7E-07 56.8 4.7 42 22-63 1-45 (474)
303 COG3634 AhpF Alkyl hydroperoxi 94.7 0.02 4.3E-07 55.9 2.5 40 21-62 210-249 (520)
304 PF13434 K_oxygenase: L-lysine 94.7 0.022 4.8E-07 57.2 2.9 35 22-56 2-37 (341)
305 PRK04965 NADH:flavorubredoxin 94.7 0.042 9.1E-07 56.0 4.9 53 280-335 184-236 (377)
306 PF07156 Prenylcys_lyase: Pren 94.6 0.2 4.3E-06 50.7 9.4 111 206-333 68-182 (368)
307 PRK01438 murD UDP-N-acetylmura 94.6 0.045 9.9E-07 57.7 5.0 35 22-56 16-50 (480)
308 PRK06249 2-dehydropantoate 2-r 94.5 0.05 1.1E-06 54.0 5.0 37 19-55 2-38 (313)
309 PRK04965 NADH:flavorubredoxin 94.5 0.045 9.8E-07 55.8 4.7 38 23-60 142-179 (377)
310 PRK06129 3-hydroxyacyl-CoA deh 94.3 0.044 9.6E-07 54.2 4.0 33 24-56 4-36 (308)
311 PRK07251 pyridine nucleotide-d 94.3 0.059 1.3E-06 56.1 5.1 38 23-60 158-195 (438)
312 PRK02705 murD UDP-N-acetylmura 94.2 0.049 1.1E-06 57.1 4.5 34 24-57 2-35 (459)
313 PF02558 ApbA: Ketopantoate re 94.2 0.064 1.4E-06 46.8 4.4 31 25-55 1-31 (151)
314 PRK05976 dihydrolipoamide dehy 94.2 0.054 1.2E-06 57.0 4.6 37 23-59 181-217 (472)
315 TIGR01350 lipoamide_DH dihydro 94.0 0.063 1.4E-06 56.3 4.7 37 23-59 171-207 (461)
316 TIGR03377 glycerol3P_GlpA glyc 93.9 0.17 3.7E-06 53.9 7.8 59 271-332 118-184 (516)
317 PRK14989 nitrite reductase sub 93.7 0.078 1.7E-06 59.7 5.0 54 280-334 188-241 (847)
318 TIGR02053 MerA mercuric reduct 93.7 0.075 1.6E-06 55.8 4.6 38 23-60 167-204 (463)
319 PF05834 Lycopene_cycl: Lycope 93.7 4.5 9.6E-05 41.2 17.5 49 279-331 87-135 (374)
320 TIGR03862 flavo_PP4765 unchara 93.7 0.39 8.4E-06 48.8 9.4 57 271-332 77-135 (376)
321 PRK06370 mercuric reductase; V 93.7 0.084 1.8E-06 55.4 4.9 38 23-60 172-209 (463)
322 PRK14106 murD UDP-N-acetylmura 93.6 0.094 2E-06 54.8 5.1 36 20-55 3-38 (450)
323 PRK11064 wecC UDP-N-acetyl-D-m 93.6 0.078 1.7E-06 54.8 4.3 34 23-56 4-37 (415)
324 TIGR01421 gluta_reduc_1 glutat 93.5 0.087 1.9E-06 55.1 4.7 37 23-59 167-203 (450)
325 PRK08293 3-hydroxybutyryl-CoA 93.5 0.09 2E-06 51.4 4.5 33 23-55 4-36 (287)
326 PRK09260 3-hydroxybutyryl-CoA 93.5 0.077 1.7E-06 51.9 3.9 33 24-56 3-35 (288)
327 PRK06467 dihydrolipoamide dehy 93.4 0.092 2E-06 55.3 4.7 38 23-60 175-212 (471)
328 PRK06416 dihydrolipoamide dehy 93.4 0.092 2E-06 55.1 4.7 38 23-60 173-210 (462)
329 PRK13512 coenzyme A disulfide 93.4 0.091 2E-06 54.8 4.5 37 23-59 149-185 (438)
330 PRK06912 acoL dihydrolipoamide 93.4 0.097 2.1E-06 54.9 4.7 37 23-59 171-207 (458)
331 PRK07846 mycothione reductase; 93.4 0.096 2.1E-06 54.8 4.7 36 23-58 167-202 (451)
332 PRK07818 dihydrolipoamide dehy 93.3 0.097 2.1E-06 55.0 4.6 37 23-59 173-209 (466)
333 PRK06292 dihydrolipoamide dehy 93.3 0.11 2.3E-06 54.6 4.9 37 23-59 170-206 (460)
334 COG1004 Ugd Predicted UDP-gluc 93.3 0.089 1.9E-06 52.7 3.9 32 24-55 2-33 (414)
335 PRK06115 dihydrolipoamide dehy 93.3 0.1 2.2E-06 54.8 4.7 37 23-59 175-211 (466)
336 TIGR02374 nitri_red_nirB nitri 93.2 0.087 1.9E-06 59.1 4.2 53 280-335 183-235 (785)
337 PRK07530 3-hydroxybutyryl-CoA 93.2 0.12 2.7E-06 50.6 4.9 33 23-55 5-37 (292)
338 PRK07819 3-hydroxybutyryl-CoA 93.1 0.11 2.4E-06 50.8 4.5 34 24-57 7-40 (286)
339 TIGR03385 CoA_CoA_reduc CoA-di 93.1 0.11 2.4E-06 53.9 4.6 36 23-58 138-173 (427)
340 PRK05249 soluble pyridine nucl 93.1 0.13 2.7E-06 54.1 5.0 38 23-60 176-213 (461)
341 COG0569 TrkA K+ transport syst 93.0 0.11 2.4E-06 48.8 4.1 33 24-56 2-34 (225)
342 PRK04148 hypothetical protein; 92.9 0.095 2.1E-06 44.7 3.1 33 23-56 18-50 (134)
343 PRK07066 3-hydroxybutyryl-CoA 92.7 0.12 2.7E-06 51.2 4.1 33 24-56 9-41 (321)
344 PRK05808 3-hydroxybutyryl-CoA 92.7 0.13 2.9E-06 50.1 4.3 33 24-56 5-37 (282)
345 PRK06327 dihydrolipoamide dehy 92.7 0.15 3.3E-06 53.7 5.0 38 23-60 184-221 (475)
346 PF13738 Pyr_redox_3: Pyridine 92.7 0.31 6.7E-06 44.6 6.5 52 279-333 82-133 (203)
347 TIGR02374 nitri_red_nirB nitri 92.6 0.13 2.8E-06 57.7 4.5 37 23-59 141-177 (785)
348 COG0686 Ald Alanine dehydrogen 92.5 0.099 2.1E-06 50.5 3.0 43 23-65 169-219 (371)
349 TIGR03452 mycothione_red mycot 92.5 0.15 3.4E-06 53.3 4.8 37 23-59 170-206 (452)
350 TIGR01320 mal_quin_oxido malat 92.4 0.41 8.8E-06 50.6 7.7 41 23-63 1-43 (483)
351 PF00890 FAD_binding_2: FAD bi 92.4 0.3 6.6E-06 50.3 6.7 36 24-59 1-36 (417)
352 PRK05257 malate:quinone oxidor 92.4 0.37 8E-06 51.0 7.4 63 269-333 170-241 (494)
353 PRK07845 flavoprotein disulfid 92.3 0.21 4.6E-06 52.5 5.5 39 23-61 178-216 (466)
354 TIGR03140 AhpF alkyl hydropero 92.2 0.15 3.3E-06 54.3 4.4 36 23-58 353-388 (515)
355 PRK06522 2-dehydropantoate 2-r 92.2 0.17 3.6E-06 49.8 4.3 32 24-55 2-33 (304)
356 PRK09564 coenzyme A disulfide 92.1 0.19 4.1E-06 52.4 4.8 37 23-59 150-186 (444)
357 PRK06035 3-hydroxyacyl-CoA deh 92.0 0.19 4E-06 49.3 4.3 33 24-56 5-37 (291)
358 TIGR01424 gluta_reduc_2 glutat 91.8 0.2 4.3E-06 52.4 4.6 37 23-59 167-203 (446)
359 cd05292 LDH_2 A subgroup of L- 91.8 0.2 4.4E-06 49.5 4.4 32 24-55 2-35 (308)
360 TIGR01316 gltA glutamate synth 91.7 0.19 4.2E-06 52.5 4.4 34 23-56 273-306 (449)
361 PTZ00058 glutathione reductase 91.7 0.19 4.2E-06 53.9 4.4 37 23-59 238-274 (561)
362 KOG0404 Thioredoxin reductase 91.7 0.18 4E-06 46.4 3.6 43 22-64 8-54 (322)
363 PTZ00153 lipoamide dehydrogena 91.7 0.21 4.6E-06 54.5 4.8 37 23-59 313-349 (659)
364 PRK05708 2-dehydropantoate 2-r 91.7 0.22 4.8E-06 49.2 4.5 33 23-55 3-35 (305)
365 COG1249 Lpd Pyruvate/2-oxoglut 91.7 0.23 4.9E-06 51.8 4.7 37 24-60 175-211 (454)
366 PRK14989 nitrite reductase sub 91.7 0.19 4.2E-06 56.6 4.5 36 24-59 147-182 (847)
367 cd01080 NAD_bind_m-THF_DH_Cycl 91.7 0.29 6.3E-06 43.7 4.8 34 21-54 43-77 (168)
368 PRK10262 thioredoxin reductase 91.6 0.22 4.7E-06 49.5 4.5 35 23-57 147-181 (321)
369 TIGR03026 NDP-sugDHase nucleot 91.6 0.19 4E-06 52.0 4.0 33 24-56 2-34 (411)
370 PRK15317 alkyl hydroperoxide r 91.5 0.21 4.5E-06 53.3 4.3 35 23-57 352-386 (517)
371 TIGR03143 AhpF_homolog putativ 91.4 0.21 4.6E-06 53.7 4.3 35 23-57 144-178 (555)
372 PRK12921 2-dehydropantoate 2-r 91.3 0.23 5E-06 48.8 4.3 30 24-53 2-31 (305)
373 PRK08229 2-dehydropantoate 2-r 91.2 0.21 4.6E-06 50.0 4.0 32 24-55 4-35 (341)
374 PLN02507 glutathione reductase 91.2 0.24 5.3E-06 52.5 4.6 36 23-58 204-239 (499)
375 TIGR01763 MalateDH_bact malate 91.2 0.28 6.1E-06 48.4 4.7 34 23-56 2-36 (305)
376 PRK12770 putative glutamate sy 91.2 0.23 5.1E-06 50.0 4.2 34 23-56 173-207 (352)
377 PLN02545 3-hydroxybutyryl-CoA 91.1 0.27 5.8E-06 48.3 4.5 32 24-55 6-37 (295)
378 PRK06130 3-hydroxybutyryl-CoA 91.1 0.28 6E-06 48.6 4.6 32 24-55 6-37 (311)
379 PF01262 AlaDh_PNT_C: Alanine 91.1 0.3 6.5E-06 43.6 4.3 32 23-54 21-52 (168)
380 PRK06116 glutathione reductase 91.0 0.28 6E-06 51.3 4.7 36 23-58 168-203 (450)
381 PRK08010 pyridine nucleotide-d 91.0 0.32 7E-06 50.7 5.1 38 23-60 159-196 (441)
382 PRK06134 putative FAD-binding 90.8 0.78 1.7E-05 49.7 8.0 52 279-332 217-272 (581)
383 PRK11199 tyrA bifunctional cho 90.7 0.34 7.4E-06 49.3 4.9 41 15-55 91-132 (374)
384 PRK12831 putative oxidoreducta 90.7 0.28 6.1E-06 51.5 4.4 34 23-56 282-315 (464)
385 TIGR01292 TRX_reduct thioredox 90.6 0.3 6.5E-06 47.6 4.3 35 23-57 142-176 (300)
386 PLN02353 probable UDP-glucose 90.6 0.28 6.1E-06 51.4 4.2 34 23-56 2-37 (473)
387 PRK13748 putative mercuric red 90.5 0.33 7.1E-06 52.4 4.8 35 23-57 271-305 (561)
388 COG1748 LYS9 Saccharopine dehy 90.4 0.34 7.3E-06 49.1 4.4 32 23-54 2-34 (389)
389 PLN02546 glutathione reductase 90.4 0.33 7.1E-06 52.2 4.6 37 23-59 253-289 (558)
390 PRK00094 gpsA NAD(P)H-dependen 90.3 0.36 7.7E-06 48.0 4.5 32 24-55 3-34 (325)
391 PRK14694 putative mercuric red 90.2 0.37 8.1E-06 50.7 4.8 35 23-57 179-213 (468)
392 PF13478 XdhC_C: XdhC Rossmann 90.2 0.33 7.2E-06 41.7 3.6 32 25-56 1-32 (136)
393 PRK14619 NAD(P)H-dependent gly 90.1 0.4 8.6E-06 47.4 4.6 33 23-55 5-37 (308)
394 KOG3851 Sulfide:quinone oxidor 90.1 0.3 6.6E-06 47.4 3.5 37 20-56 37-75 (446)
395 COG3486 IucD Lysine/ornithine 90.1 0.37 8E-06 48.5 4.3 39 19-57 2-41 (436)
396 PRK07417 arogenate dehydrogena 90.0 0.34 7.3E-06 47.2 4.0 32 24-55 2-33 (279)
397 PF01134 GIDA: Glucose inhibit 90.0 1.1 2.4E-05 45.5 7.8 28 24-51 1-28 (392)
398 PRK07121 hypothetical protein; 90.0 0.9 1.9E-05 48.1 7.5 54 278-332 176-233 (492)
399 PRK06719 precorrin-2 dehydroge 90.0 0.43 9.4E-06 42.1 4.3 35 19-53 10-44 (157)
400 TIGR01470 cysG_Nterm siroheme 89.9 0.41 8.9E-06 44.3 4.3 35 21-55 8-42 (205)
401 PF02254 TrkA_N: TrkA-N domain 89.9 0.47 1E-05 39.2 4.3 32 25-56 1-32 (116)
402 PRK14618 NAD(P)H-dependent gly 89.9 0.45 9.9E-06 47.4 4.9 33 23-55 5-37 (328)
403 TIGR00518 alaDH alanine dehydr 89.8 0.38 8.3E-06 48.8 4.4 33 23-55 168-200 (370)
404 PRK06718 precorrin-2 dehydroge 89.8 0.44 9.5E-06 44.0 4.4 35 20-54 8-42 (202)
405 TIGR01816 sdhA_forward succina 89.7 1.5 3.1E-05 47.4 9.0 58 273-332 112-175 (565)
406 PRK14727 putative mercuric red 89.6 0.45 9.8E-06 50.2 4.9 34 23-56 189-222 (479)
407 PRK12843 putative FAD-binding 89.6 1.2 2.5E-05 48.3 8.1 52 279-332 221-276 (578)
408 PF03446 NAD_binding_2: NAD bi 89.6 0.48 1E-05 42.0 4.3 33 23-55 2-34 (163)
409 PF10727 Rossmann-like: Rossma 89.5 0.35 7.6E-06 41.0 3.2 38 18-55 6-43 (127)
410 PF13241 NAD_binding_7: Putati 89.5 0.28 6.1E-06 39.9 2.5 37 19-55 4-40 (103)
411 PRK15057 UDP-glucose 6-dehydro 89.5 0.41 8.9E-06 48.9 4.3 32 24-56 2-33 (388)
412 PRK13339 malate:quinone oxidor 89.3 1.3 2.7E-05 46.9 7.8 63 269-333 171-242 (497)
413 PRK14620 NAD(P)H-dependent gly 89.1 0.47 1E-05 47.3 4.4 32 24-55 2-33 (326)
414 PTZ00052 thioredoxin reductase 89.0 0.48 1E-05 50.3 4.6 31 24-54 184-214 (499)
415 PRK05329 anaerobic glycerol-3- 89.0 1.6 3.4E-05 45.2 8.2 34 22-55 2-35 (422)
416 PRK04308 murD UDP-N-acetylmura 89.0 0.6 1.3E-05 48.7 5.2 35 23-57 6-40 (445)
417 PRK01710 murD UDP-N-acetylmura 88.9 0.47 1E-05 49.7 4.4 32 24-55 16-47 (458)
418 cd01075 NAD_bind_Leu_Phe_Val_D 88.9 0.75 1.6E-05 42.4 5.2 37 19-55 25-61 (200)
419 KOG3923 D-aspartate oxidase [A 88.9 0.25 5.4E-06 47.5 2.0 25 21-45 2-26 (342)
420 TIGR02354 thiF_fam2 thiamine b 88.9 0.61 1.3E-05 43.0 4.6 33 22-54 21-54 (200)
421 TIGR01438 TGR thioredoxin and 88.8 0.46 1E-05 50.2 4.2 32 23-54 181-212 (484)
422 KOG2304 3-hydroxyacyl-CoA dehy 88.7 0.44 9.6E-06 44.0 3.4 35 22-56 11-45 (298)
423 TIGR01915 npdG NADPH-dependent 88.7 0.55 1.2E-05 43.9 4.2 32 24-55 2-34 (219)
424 PRK02472 murD UDP-N-acetylmura 88.6 0.59 1.3E-05 48.8 4.9 33 23-55 6-38 (447)
425 PF01488 Shikimate_DH: Shikima 88.6 0.74 1.6E-05 39.4 4.7 33 22-54 12-45 (135)
426 PRK11749 dihydropyrimidine deh 88.5 0.52 1.1E-05 49.4 4.4 34 23-56 274-308 (457)
427 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.5 0.46 1E-05 50.3 4.0 33 24-56 7-39 (503)
428 PRK07531 bifunctional 3-hydrox 88.4 0.48 1E-05 50.2 4.1 32 24-55 6-37 (495)
429 PRK10157 putative oxidoreducta 88.4 1.7 3.7E-05 45.1 8.1 51 279-332 108-158 (428)
430 TIGR01423 trypano_reduc trypan 88.1 0.59 1.3E-05 49.4 4.5 37 23-59 188-227 (486)
431 cd05291 HicDH_like L-2-hydroxy 88.0 0.64 1.4E-05 45.9 4.4 33 24-56 2-36 (306)
432 PRK04690 murD UDP-N-acetylmura 88.0 0.57 1.2E-05 49.3 4.3 34 23-56 9-42 (468)
433 PRK00141 murD UDP-N-acetylmura 87.8 0.7 1.5E-05 48.7 4.8 40 14-55 9-48 (473)
434 PRK15116 sulfur acceptor prote 87.8 0.77 1.7E-05 44.3 4.6 34 22-55 30-64 (268)
435 PTZ00318 NADH dehydrogenase-li 87.6 0.7 1.5E-05 47.9 4.6 37 24-60 175-225 (424)
436 COG2072 TrkA Predicted flavopr 87.6 0.84 1.8E-05 47.6 5.2 35 23-57 176-210 (443)
437 cd01339 LDH-like_MDH L-lactate 87.5 0.62 1.3E-05 45.9 4.0 31 25-55 1-32 (300)
438 PRK03803 murD UDP-N-acetylmura 87.5 0.76 1.7E-05 48.0 4.9 38 18-55 2-39 (448)
439 PRK08268 3-hydroxy-acyl-CoA de 87.4 0.67 1.4E-05 49.2 4.4 34 23-56 8-41 (507)
440 PRK06175 L-aspartate oxidase; 87.4 2.4 5.1E-05 44.1 8.4 39 21-60 3-41 (433)
441 TIGR01505 tartro_sem_red 2-hyd 87.3 0.66 1.4E-05 45.4 4.0 31 25-55 2-32 (291)
442 PRK11730 fadB multifunctional 87.3 0.57 1.2E-05 52.0 3.9 34 23-56 314-347 (715)
443 PRK03369 murD UDP-N-acetylmura 87.2 0.69 1.5E-05 48.9 4.4 32 24-55 14-45 (488)
444 COG0771 MurD UDP-N-acetylmuram 87.1 0.66 1.4E-05 48.0 4.0 36 22-57 7-42 (448)
445 PRK04176 ribulose-1,5-biphosph 87.0 2.1 4.4E-05 41.2 7.2 53 279-332 104-167 (257)
446 PLN02657 3,8-divinyl protochlo 87.0 1.3 2.9E-05 45.3 6.2 42 14-55 52-94 (390)
447 PLN02695 GDP-D-mannose-3',5'-e 87.0 1 2.3E-05 45.7 5.4 40 15-54 14-54 (370)
448 PRK06847 hypothetical protein; 86.8 2.3 5.1E-05 42.9 7.9 37 21-57 3-39 (375)
449 PRK08773 2-octaprenyl-3-methyl 86.7 2.1 4.6E-05 43.6 7.6 38 20-57 4-41 (392)
450 TIGR02437 FadB fatty oxidation 86.5 0.75 1.6E-05 50.9 4.3 34 23-56 314-347 (714)
451 PRK06223 malate dehydrogenase; 86.4 0.92 2E-05 44.8 4.5 34 23-56 3-37 (307)
452 PRK15461 NADH-dependent gamma- 86.4 0.79 1.7E-05 45.0 4.0 32 24-55 3-34 (296)
453 PRK12835 3-ketosteroid-delta-1 86.4 2.1 4.5E-05 46.5 7.5 54 278-332 212-269 (584)
454 TIGR01813 flavo_cyto_c flavocy 86.4 1.8 3.8E-05 45.1 6.9 38 24-61 1-39 (439)
455 PRK12778 putative bifunctional 86.4 0.77 1.7E-05 51.4 4.4 34 23-56 571-605 (752)
456 COG0665 DadA Glycine/D-amino a 86.3 2.6 5.6E-05 42.8 7.9 42 20-61 2-43 (387)
457 PRK09424 pntA NAD(P) transhydr 86.0 0.79 1.7E-05 48.3 4.0 33 23-55 166-198 (509)
458 PRK12844 3-ketosteroid-delta-1 85.9 2.4 5.2E-05 45.6 7.8 53 278-332 207-263 (557)
459 PRK05945 sdhA succinate dehydr 85.9 3.6 7.7E-05 44.5 9.1 41 20-60 1-43 (575)
460 PRK05675 sdhA succinate dehydr 85.9 3.1 6.6E-05 45.0 8.5 60 272-332 118-183 (570)
461 PF00070 Pyr_redox: Pyridine n 85.9 2.2 4.8E-05 32.6 5.5 41 279-322 40-80 (80)
462 TIGR01812 sdhA_frdA_Gneg succi 85.8 3.5 7.5E-05 44.5 9.0 38 24-61 1-38 (566)
463 TIGR00292 thiazole biosynthesi 85.8 3 6.6E-05 39.9 7.6 52 279-332 100-164 (254)
464 cd05191 NAD_bind_amino_acid_DH 85.7 1.7 3.7E-05 33.9 4.9 32 22-53 23-55 (86)
465 TIGR02964 xanthine_xdhC xanthi 85.7 1.2 2.6E-05 42.5 4.7 35 22-56 100-134 (246)
466 PRK12842 putative succinate de 85.7 2.4 5.2E-05 45.9 7.6 52 279-332 214-269 (574)
467 PRK07831 short chain dehydroge 85.7 1.5 3.2E-05 41.9 5.5 34 22-55 17-52 (262)
468 cd00401 AdoHcyase S-adenosyl-L 85.6 0.97 2.1E-05 46.4 4.3 34 23-56 203-236 (413)
469 TIGR01984 UbiH 2-polyprenyl-6- 85.4 2.8 6.1E-05 42.5 7.7 34 24-57 1-35 (382)
470 cd01065 NAD_bind_Shikimate_DH 85.4 1.5 3.2E-05 38.2 4.9 34 22-55 19-53 (155)
471 PRK11559 garR tartronate semia 85.3 1 2.2E-05 44.1 4.3 32 24-55 4-35 (296)
472 PRK00683 murD UDP-N-acetylmura 85.3 0.95 2.1E-05 46.8 4.2 34 23-56 4-37 (418)
473 TIGR02441 fa_ox_alpha_mit fatt 85.2 0.86 1.9E-05 50.6 4.0 34 23-56 336-369 (737)
474 COG1250 FadB 3-hydroxyacyl-CoA 85.1 1.1 2.4E-05 44.0 4.3 32 23-54 4-35 (307)
475 COG0654 UbiH 2-polyprenyl-6-me 85.1 2.6 5.7E-05 43.0 7.3 33 22-54 2-34 (387)
476 PRK07688 thiamine/molybdopteri 84.9 1.2 2.7E-05 44.5 4.6 33 22-54 24-57 (339)
477 COG1893 ApbA Ketopantoate redu 84.9 0.88 1.9E-05 44.9 3.5 33 24-56 2-34 (307)
478 cd01078 NAD_bind_H4MPT_DH NADP 84.9 1.6 3.4E-05 39.9 5.0 34 21-54 27-61 (194)
479 TIGR02032 GG-red-SF geranylger 84.9 3.1 6.6E-05 40.2 7.4 51 279-332 91-142 (295)
480 PRK07333 2-octaprenyl-6-methox 84.9 3 6.5E-05 42.6 7.6 35 22-56 1-37 (403)
481 PRK12549 shikimate 5-dehydroge 84.8 1.2 2.6E-05 43.4 4.4 33 23-55 128-161 (284)
482 PRK10015 oxidoreductase; Provi 84.8 3.2 6.9E-05 43.1 7.8 50 280-332 109-158 (429)
483 PRK08306 dipicolinate synthase 84.7 1.2 2.6E-05 43.8 4.3 34 22-55 152-185 (296)
484 PRK07843 3-ketosteroid-delta-1 84.6 3.1 6.7E-05 44.8 7.8 52 279-332 208-263 (557)
485 PLN02256 arogenate dehydrogena 84.5 1.4 3E-05 43.5 4.7 34 22-55 36-69 (304)
486 PTZ00082 L-lactate dehydrogena 84.5 1.6 3.4E-05 43.5 5.1 35 23-57 7-42 (321)
487 PRK02006 murD UDP-N-acetylmura 84.3 1.3 2.7E-05 47.1 4.7 33 23-55 8-40 (498)
488 TIGR02440 FadJ fatty oxidation 84.2 1 2.2E-05 49.9 3.9 34 23-56 305-339 (699)
489 COG0287 TyrA Prephenate dehydr 84.2 1 2.2E-05 43.8 3.5 42 23-64 4-45 (279)
490 PRK07045 putative monooxygenas 84.1 3.4 7.3E-05 42.1 7.6 55 279-334 106-162 (388)
491 PRK01368 murD UDP-N-acetylmura 84.0 1.1 2.4E-05 46.9 4.0 31 23-54 7-37 (454)
492 PRK09078 sdhA succinate dehydr 84.0 4 8.7E-05 44.4 8.4 43 18-60 8-50 (598)
493 PRK06452 sdhA succinate dehydr 84.0 3.5 7.5E-05 44.5 7.9 42 20-61 3-44 (566)
494 PRK08958 sdhA succinate dehydr 83.9 4.3 9.3E-05 44.0 8.6 59 273-332 136-200 (588)
495 PTZ00142 6-phosphogluconate de 83.9 1.1 2.4E-05 46.9 3.9 34 23-56 2-35 (470)
496 PRK05714 2-octaprenyl-3-methyl 83.8 3.4 7.5E-05 42.3 7.6 35 22-56 2-36 (405)
497 PRK00066 ldh L-lactate dehydro 83.8 1.8 3.8E-05 43.0 5.1 35 21-55 5-41 (315)
498 PRK00421 murC UDP-N-acetylmura 83.7 1.1 2.4E-05 47.0 3.8 34 23-56 8-42 (461)
499 PLN02464 glycerol-3-phosphate 83.6 4.1 9E-05 44.5 8.3 60 273-332 223-290 (627)
500 PRK07502 cyclohexadienyl dehyd 83.6 1.4 3.1E-05 43.5 4.4 33 23-55 7-41 (307)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=1e-67 Score=532.57 Aligned_cols=373 Identities=35% Similarity=0.648 Sum_probs=290.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
|+++|||||+|||+.++++|++|+++|++|||+|+|++|||.++|++++++.+|+...... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4688999999999999999999999999999999999999999999999998888654210 00
Q ss_pred ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
+.+ ..+|+|+|||. |++++++|+++++|+++++.+|+||+.+++.|+|. +|++++||+++.|+|+++.+++.+||+|
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 122 36799999998 99999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (486)
|||++++.++....+... + ..+...+++.+++++|++++.+++++.|++++...+... ..++.+++.++++|+
T Consensus 141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~---~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYL---TEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGG---GSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccc---cccHHHHHHHHHHHH
Confidence 999999988754322110 1 113446899999999999999999999999886432211 126788999999999
Q ss_pred HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (486)
Q Consensus 259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~ 338 (486)
.|+|+||++ +|+||+||.|||+|+|||++|+.||+|+||++|++|..++ +|++.+|+ ++|++++|++||++|.|.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999986 4999999999999999999999999999999999999974 68899997 599999999999999886
Q ss_pred CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC--CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (486)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~ 416 (486)
++-. ...++++|+|+|+++|+.... ...++++|+.+.+ ..++||++++|+++++||+|+
T Consensus 289 p~~v-----------------~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PEKV-----------------KKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GCGE-----------------EEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred cccc-----------------cccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence 3211 124579999999999998643 3567779987654 356799999999999999999
Q ss_pred EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414 417 FVLYFSALCDEVNQGKKLLHAALSALQ 443 (486)
Q Consensus 417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~ 443 (486)
||+|+||..++ .+++++|+++++.|-
T Consensus 350 yi~~~St~~~t-~~p~~eL~~~l~lL~ 375 (438)
T PF00996_consen 350 YIAYVSTTVET-SNPEEELEPALELLG 375 (438)
T ss_dssp EEEEEEEEE-S-S-HHHHTHHHHHTT-
T ss_pred EEEEEEeccCC-CCcHHHHHHHHHhhc
Confidence 99999998765 588999999998554
No 2
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-65 Score=487.34 Aligned_cols=415 Identities=34% Similarity=0.590 Sum_probs=327.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh--------hhhhhhh---cCCCCC-------
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPS------- 80 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~~------- 80 (486)
.|++|||||||||+.+++.|++.+|+|.+|||||+|.||||.|+||++. .+.++.+ +...++
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 4688999999999999999999999999999999999999999999987 3333321 111111
Q ss_pred ---CCCCCCccccccccc---------------cccccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcc
Q 011414 81 ---SVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (486)
Q Consensus 81 ---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~ 142 (486)
+.+.+.++-+.+... .....+.++.|+|+|||. |+++|++|.++++|+++++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 111122333333220 011123357899999998 9999999999999999999999999999
Q ss_pred cceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH
Q 011414 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (486)
Q Consensus 143 ~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~ 222 (486)
+..+... +|++..|||+++++|+++.|++.+||+||||++++.+|..+. ..+...++.+.||.|||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988775 789999999999999999999999999999999999985211 1122345667899999999999999
Q ss_pred HHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCce
Q 011414 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (486)
Q Consensus 223 l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V 302 (486)
++.+++++|+|..+++ .++.+++.+.+.|+.|+||||+++ |+||.||.|+|+|+|||+|+++||.|+|+++|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999976543 478999999999999999999976 99999999999999999999999999999999
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC--
Q 011414 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-- 380 (486)
Q Consensus 303 ~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~-- 380 (486)
+.|..+++.+++..+..+.|+.+.|+++|+.|.|+ +... ... ....+++|+++|++.++....
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence 99999854444333334789999999999999987 4322 111 123369999999999976433
Q ss_pred -CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeeccCcchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 011414 381 -SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (486)
Q Consensus 381 -~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (486)
...++.+++..-+ ...+.+++++++++.||+|.|++|++ +..+..+.++++..+.+++.. +.
T Consensus 375 q~~~ll~~~~~epg---~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~ 437 (547)
T KOG4405|consen 375 QQLSLLSLLAVEPG---AMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI 437 (547)
T ss_pred hhhhhhhccccCcc---hhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence 1234455543321 45678899999999999999999998 434457889999999999972 11
Q ss_pred cccccCCcceEeEEeEEeecCc
Q 011414 460 EDMEEAKPTLLWSALYIQDLSL 481 (486)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~ 481 (486)
.+ +..||++||++||+|++.+
T Consensus 438 ~~-E~~kp~llw~~yf~~~~~s 458 (547)
T KOG4405|consen 438 KN-ETSKPRLLWALYFTMRDSS 458 (547)
T ss_pred cc-ccccceehHHHHhhHHhhc
Confidence 12 3358999999999998876
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=7.5e-62 Score=497.05 Aligned_cols=375 Identities=29% Similarity=0.515 Sum_probs=314.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
|+++|||||||||++||++|++|+++|++|+|||+|++|||+++|++++++..|+.... ++ .
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~-~~-----------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGE-TP-----------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccC-CC-----------------c
Confidence 46789999999999999999999999999999999999999999999988655543221 11 0
Q ss_pred ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
+.+ ...|.|++|+. |++++++|.++++|.++++.+|+||+.++..|++..+|+++++|+++.++|+++.+++.+|+++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 35789999996 9999999999999999999999999999999987448899999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (486)
|||++++.++....+... . ..++..+|+.+||+++++++.+++++.+++++.....- ...++..++.++++|+
T Consensus 141 ~kfl~~v~~~~~~~~~~~---~-~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~---~~~pa~~tl~ri~~y~ 213 (443)
T PTZ00363 141 KNFLQYVSNYDENDPETH---K-GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDY---LNKPAIETVMRIKLYM 213 (443)
T ss_pred HHHHHHHHhhccCChhhh---c-ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccccc---ccCCHHHHHHHHHHHH
Confidence 999999987753221110 0 01234589999999999999999999888777521100 0125778899999999
Q ss_pred HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (486)
Q Consensus 259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~ 338 (486)
.|+++||.+ +++||+||+++|+|+|||.++++||+|+|+++|++|..++ ++++++|++++|++++|++||++|.+.
T Consensus 214 ~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~~- 289 (443)
T PTZ00363 214 DSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSYF- 289 (443)
T ss_pred HHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECcccc-
Confidence 999999964 4889999999999999999999999999999999998873 578889999999999999999999886
Q ss_pred CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (486)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~ 416 (486)
|... ...++++|+|||+++|+... .+..+++||+.+++. .+.||++++|+++++||+|+
T Consensus 290 p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~ 350 (443)
T PTZ00363 290 PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK 350 (443)
T ss_pred cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence 3211 13678999999999998653 245689999988753 57899999999999999999
Q ss_pred EEEEEEEeeccCcchHHHHHHHHHHHHh
Q 011414 417 FVLYFSALCDEVNQGKKLLHAALSALQK 444 (486)
Q Consensus 417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~~ 444 (486)
||+|+||.+++ .+++++|++++++|+.
T Consensus 351 ~i~~~st~~~t-~~~~~~l~~~~~~l~~ 377 (443)
T PTZ00363 351 YIAIISTTVET-NNPEKEIEPALKLLGP 377 (443)
T ss_pred EEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence 99999999876 5999999999999995
No 4
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-56 Score=427.88 Aligned_cols=371 Identities=31% Similarity=0.536 Sum_probs=310.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (486)
+++|||||+|+|+.+++.+++|+++|++|+|+|||++|||-.+|+++.++..|+......+ .+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence 4569999999999999999999999999999999999999999999998888887442110 01
Q ss_pred cccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHH
Q 011414 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (486)
Q Consensus 100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~ 179 (486)
.. ...|.|++|+. |+++++.+.++++|++.++.+|++|+.+++.|+|. +|++++||.++.++|+++.+++.+||++|
T Consensus 65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 11 36789999998 99999999999999999999999999999999987 67999999999999999999999999999
Q ss_pred HHHHHHHhhcccCccccccccccccccC-CcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHH
Q 011414 180 RFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (486)
Q Consensus 180 ~fl~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (486)
||+.++.++.++.+... -..+.. .++.+++.++++....+.+..+++++...+. .. ..++.+++.++.+|+
T Consensus 142 kFl~~V~n~~e~~~~~~-----~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~--~l-d~p~~~~~~ri~~Y~ 213 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPKTW-----QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDS--YL-DQPAKETLERILLYV 213 (440)
T ss_pred HHHHHHhhhhhhccccc-----cccccccchHHHHHHHhcccccceeeeeeeeEEEecch--hc-cCccHHHHHHHHHHH
Confidence 99999998754432211 112232 3899999999999999998888776643221 11 246888999999999
Q ss_pred HhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCCC
Q 011414 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (486)
Q Consensus 259 ~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~~ 338 (486)
+|+++||+++ ++||+||.|||+|+|||+++..||+|+||.++.+|..++ +|++++|+ ..++..+|+.+|++|+|.
T Consensus 214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~- 288 (440)
T KOG1439|consen 214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF- 288 (440)
T ss_pred HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc-
Confidence 9999999865 899999999999999999999999999999999998853 68888887 466778899999999986
Q ss_pred CCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC--CCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCe
Q 011414 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (486)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~--~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~ 416 (486)
+.- ....++++|++||+++|.. .+.++++++||+.+.+ ..+.|||..+|+....||+|+
T Consensus 289 ~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG~ 349 (440)
T KOG1439|consen 289 PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEGK 349 (440)
T ss_pred hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCce
Confidence 221 1134579999999998864 3446789999987765 378999999999999999999
Q ss_pred EEEEEEEeeccCcchHHHHHHHHHHHH
Q 011414 417 FVLYFSALCDEVNQGKKLLHAALSALQ 443 (486)
Q Consensus 417 ~vi~~~t~~~~~~~~~~~l~~~~~~l~ 443 (486)
+|.+++|..++ .+++.++.++++.|-
T Consensus 350 yia~vsT~~Et-~~pE~ei~~~lellg 375 (440)
T KOG1439|consen 350 YIAYVSTTVET-PNPEVEILPGLELLG 375 (440)
T ss_pred EEEEEEeccCC-CChHHhhhhHHHhhC
Confidence 99999997765 477888888887765
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-53 Score=398.99 Aligned_cols=369 Identities=31% Similarity=0.533 Sum_probs=305.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
+.+.|||||+|||+..++.+++|+++|++|+|+|+|++||+-.+|++..++..|+.....-+
T Consensus 3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------ 64 (434)
T COG5044 3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------ 64 (434)
T ss_pred ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------
Confidence 44679999999999999999999999999999999999999999999999888987663211
Q ss_pred ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
+ .....+.|++|+. |+++++.+.++.+|++.++.+|++|+++...|+|. +|+++++|.++.++|+++.+++.+||.+
T Consensus 65 ~-k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v 141 (434)
T COG5044 65 S-KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV 141 (434)
T ss_pred c-ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence 0 1125688999998 99999999999999999999999999999999987 6699999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~ 257 (486)
|||++++..+.+.. ..+-..+.++++.+++. +|+++.....++.+++|++. +.+ .++++++.++.+|
T Consensus 142 mrFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y 209 (434)
T COG5044 142 MRFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRY 209 (434)
T ss_pred HHHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHH
Confidence 99999998885421 11122455678888886 69999999999999888752 322 5789999999999
Q ss_pred HHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCCC
Q 011414 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (486)
Q Consensus 258 ~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~~ 337 (486)
++|++.||..| ++||+||.+||+|+|||.+++.||+|+||+++.+|... + .+.+|. .++.+..|.+||.+|++.
T Consensus 210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t--k-~v~~v~-~~~~~~ka~KiI~~~~~~ 283 (434)
T COG5044 210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET--K-DVETVD-KGSLTQKAGKIISSPTYF 283 (434)
T ss_pred HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc--c-ceeeee-cCcceeecCcccCCcccc
Confidence 99999999755 99999999999999999999999999999999999654 2 234665 577889999999998875
Q ss_pred CCCCCcccchhhhhhhhhhccCCCcceEEEEEEEec-CC--CCCCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 011414 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414 (486)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~-~~--~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~ 414 (486)
+. +.. .++ ....+.|++||.. +| +....+.++++|||.++.. .+.|++..+|+.+..||+
T Consensus 284 -~~---~~~-~~~----------q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE 346 (434)
T COG5044 284 -RE---DSK-SVG----------QFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE 346 (434)
T ss_pred -cc---ccc-ccc----------hhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence 22 100 000 1135889999876 54 4445578899999988764 556999999999999999
Q ss_pred CeEEEEEEEeeccCcchHHHHHHHHHHHHh
Q 011414 415 GMFVLYFSALCDEVNQGKKLLHAALSALQK 444 (486)
Q Consensus 415 G~~vi~~~t~~~~~~~~~~~l~~~~~~l~~ 444 (486)
|++|+|++|..++ ..++.++..+++.|..
T Consensus 347 Gy~l~yisT~~et-~~~e~ei~~~lell~~ 375 (434)
T COG5044 347 GYYLAYISTIDET-PTPEDEILAALELLGP 375 (434)
T ss_pred ceEEEEEEeccCC-CChHHHHHHHHHhhcc
Confidence 9999999997655 4778888888886653
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=2.5e-27 Score=250.50 Aligned_cols=344 Identities=16% Similarity=0.137 Sum_probs=211.7
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (486)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999998653
Q ss_pred CCceEeecCCCEEEecChHHHHHHHhcCc--ccccchhccccee-eeccCCceeecCCCHHHHhhc-ccCChHhHHHHHH
Q 011414 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (486)
Q Consensus 105 ~~~~~idl~Gp~ll~~~~~l~~~l~~~~~--~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~l~~~~k~~l~~ 180 (486)
+|.+|. |++++...+.+.+++.+.|. .++++|...++.+ ++..+|+.+.++.+....... ..+.+.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 467787 58888766666777777773 5667887776655 333467778888765432221 1233556666667
Q ss_pred HHHHHHhhccc-------Ccccc--c-----cccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhc
Q 011414 181 FFKLVQGHLSL-------DESEE--N-----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (486)
Q Consensus 181 fl~~~~~~~~~-------~~~~~--~-----~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s 246 (486)
|++.++..... .+... . ...........|+.+|++++..++.++.++.+..... ..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence 66654432210 00000 0 0001122346899999999888888888765321111 1121 1112
Q ss_pred hhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEE
Q 011414 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (486)
Q Consensus 247 ~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~ 326 (486)
+.. .+..+. ...+ .+++|.||++.++++|.+.++.+|++|+++++|++|..+ ++++++|++++|+++.
T Consensus 197 ~~~---~l~~~~---~~~~----g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 SIY---ALISAL---EREW----GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred HHH---HHHHHH---Hhhc----eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 211 111111 1111 156899999999999999999999999999999999887 6778899999999999
Q ss_pred cCEEEECCC--CCCCCCCcccchhhhhhh-hhhccCCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 011414 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (486)
Q Consensus 327 A~~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~---~~~~~~~~~~~~~~p~~~~-------- 392 (486)
||+||++.+ .++..|+ +.+ ..+..+ +.+.+...........+.++ .++.....+.++..+....
T Consensus 265 ad~VI~a~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL-PNH-PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK 342 (502)
T ss_pred CCEEEECCcHHHHHHHhc-Ccc-ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence 999997533 3333332 111 111111 11111111112222233345 3343222233333232110
Q ss_pred CC-CCCceEEEEEeCCC-CccCCCCeEEEEEEEeec
Q 011414 393 FP-EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCD 426 (486)
Q Consensus 393 ~~-~~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~~~ 426 (486)
+. ..++.+|+...+.. ++.+|+|+.++++.+.++
T Consensus 343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~ 378 (502)
T TIGR02734 343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVP 378 (502)
T ss_pred CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCC
Confidence 00 12567888887664 588999999988887654
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=7.3e-27 Score=244.51 Aligned_cols=260 Identities=20% Similarity=0.272 Sum_probs=168.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (486)
|..+||||||||++||+||++|||+|++|+|||||+++||+++|++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 457999999999999999999999999999999999999999998654
Q ss_pred cccCCCCceEeecCCCEEEecChHHHHHHHhcC-cccc-cchhccccee-eeccCCceeecCCCHHHHhh-cccCChHhH
Q 011414 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (486)
Q Consensus 100 ~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~-~~~y-~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~-~~~l~~~~k 175 (486)
+|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+...... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 466777 58776555543 5555555 5444 6776666655 33445777777776643322 122334555
Q ss_pred HHHHHHHHHHHhh-c---ccCcc-cccc----cccc------ccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchh
Q 011414 176 NQLMRFFKLVQGH-L---SLDES-EENN----VRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (486)
Q Consensus 176 ~~l~~fl~~~~~~-~---~~~~~-~~~~----~~~~------~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~ 240 (486)
..+.+++..+.+. . ..... .... .... ......+..++++.+..++.++..+.+...... ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence 5555555533221 1 00000 0000 0000 012235667777766556777777665432221 221
Q ss_pred hhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC
Q 011414 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (486)
Q Consensus 241 ~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (486)
. ..+ ++.. ++..++ +.. | +.||+||++.|+++|.+.++++||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ~--~~~---a~~~---~~~~~~-~~~--G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 S--TPP---ALYL---LLSHLG-LSG--G-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred C--chh---HHHH---HHHHhc-ccC--C-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0 001 2222 221111 221 2 67999999999999999999999999999999999998 7777788888
Q ss_pred CCcEEEcCEEEECCCC
Q 011414 321 SGQDILSHKLVLDPSF 336 (486)
Q Consensus 321 ~G~~i~A~~VI~~p~~ 336 (486)
+|+.+.+|.||++.+.
T Consensus 264 ~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 264 DGENIEADAVVSNADP 279 (487)
T ss_pred ccceeccceeEecCch
Confidence 8878999999976444
No 8
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=1e-25 Score=237.56 Aligned_cols=341 Identities=13% Similarity=0.076 Sum_probs=190.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (486)
.||||||||++||+||++|+++|++|+|||+++++||++++++++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 599999999999999999999999999999999999999998653
Q ss_pred CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhccccee-eeccCC-ceeecCCCHHHHhhc-ccCChHhHH
Q 011414 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (486)
Q Consensus 103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g-~~~~vp~s~~~~f~~-~~l~~~~k~ 176 (486)
+|.+|. |++++.. .+.+-+++.+.|+... ++...++.+ ++..|| ..+.++.+.+..... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 366777 5887743 3345566667776521 123334332 233355 345555554322110 011122221
Q ss_pred HHHH---HHHHHHhhcccCc----c-c----------cccccccccccCCcHHHHHHhc--CCChHHHHHHHHHHhhccC
Q 011414 177 QLMR---FFKLVQGHLSLDE----S-E----------ENNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY 236 (486)
Q Consensus 177 ~l~~---fl~~~~~~~~~~~----~-~----------~~~~~~~~~~~~~s~~~~l~~~--~l~~~l~~~l~~~i~~~~~ 236 (486)
.+.. ............+ . . .........+...|+.+|++++ ..++.++.++...... +
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--~ 198 (492)
T TIGR02733 121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--Y 198 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--h
Confidence 1111 1110000000000 0 0 0000000113357899999986 4577888876532221 1
Q ss_pred CchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEE
Q 011414 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (486)
Q Consensus 237 ~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (486)
...+ ..+.++..++. ++ .+..... | ++||+||+++|+++|++.++.+||+|+++++|++|.++ ++++.+
T Consensus 199 ~~~~-~~~~~~~~~~~----~~-~~~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 267 (492)
T TIGR02733 199 SQED-ADETAALYGAT----VL-QMAQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW 267 (492)
T ss_pred ccCC-hhhhhHHHHHH----Hh-hccccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence 1111 01122222111 11 1111111 2 56899999999999999999999999999999999987 667677
Q ss_pred EEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhhh-hccCCCcceEEEEEEEecCCCCC-C-CCceEEEe
Q 011414 317 VRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQA-FSLSDNKGKVARGICITRSSLKP-D-LSNFLVIF 387 (486)
Q Consensus 317 V~~~~G-----~~i~A~~VI~~p~-~~~~~l~~~~~~~l~~~~~~-l~~~~~~~~v~r~i~i~~~~~~~-~-~~~~~~~~ 387 (486)
|++.+| +++.||+||++.+ ..+.+|+ + ++.++..+.. +.+...........+.+++...+ . ..+....+
T Consensus 268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~ 345 (492)
T TIGR02733 268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS 345 (492)
T ss_pred EEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence 877665 5799999997532 2223443 1 1233322222 21211111122333445553211 1 11222222
Q ss_pred CCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEEeec
Q 011414 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD 426 (486)
Q Consensus 388 p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t~~~ 426 (486)
.+ ...+|+...+.+++.+|+|+.++++++..+
T Consensus 346 ~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~ 377 (492)
T TIGR02733 346 DH-------QGSLFVSISQEGDGRAPQGEATLIASSFTD 377 (492)
T ss_pred CC-------CceEEEEeCCccccCCCCCceEEEEEcCCC
Confidence 21 236888877777788999999998887653
No 9
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=1.3e-25 Score=236.67 Aligned_cols=342 Identities=14% Similarity=0.145 Sum_probs=201.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (486)
|||||||+|++||+||++|+++|++|+||||++.+||++++++.++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999987644
Q ss_pred CCCCceEeecCCCEEEe------cChHHHHHHHhcCcccccchhccccee-eeccCCceeecCCCHHHHhhc-ccCChHh
Q 011414 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (486)
Q Consensus 103 ~~~~~~~idl~Gp~ll~------~~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~l~~~~ 174 (486)
|.+|. |++++. ....+.+.|...+. .+++......+ +...+|..+.++.+.+..... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 34444 344432 11233344444432 23343333222 222356566777666433321 1234677
Q ss_pred HHHHHHHHHHHHhhcc------cCc-c-cccc--------cc--ccccccCCcHHHHHHhcCCChHHHHHHHH-HHhhcc
Q 011414 175 KNQLMRFFKLVQGHLS------LDE-S-EENN--------VR--ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD 235 (486)
Q Consensus 175 k~~l~~fl~~~~~~~~------~~~-~-~~~~--------~~--~~~~~~~~s~~~~l~~~~l~~~l~~~l~~-~i~~~~ 235 (486)
...+.+|++.+..... ... . .... .. ....+...++.++++++..++.+++++.. +....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~- 197 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWS- 197 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhcc-
Confidence 7778887776443211 000 0 0000 00 01123347899999999999999997753 22221
Q ss_pred CCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE
Q 011414 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (486)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~ 315 (486)
.... .+.+.. ..+..+. ...++ .+.+|.||+++|+++|.+.++.+|++|+++++|++|.++ ++++.
T Consensus 198 ~~p~---~~~p~~---~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 263 (493)
T TIGR02730 198 VVPA---DQTPMI---NAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV 263 (493)
T ss_pred CCCc---ccchhh---hHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence 1110 011221 1111111 11122 267899999999999999999999999999999999887 67888
Q ss_pred EEEeCCCcEEEcCEEEEC--CCCCCCCCCcc--cchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCC
Q 011414 316 GVRLASGQDILSHKLVLD--PSFTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPR 390 (486)
Q Consensus 316 gV~~~~G~~i~A~~VI~~--p~~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~-~~~~~~~p~~ 390 (486)
+|++.+|+++.||+||++ +..++..|+.. ..+..+..++.+.. ........+.++.++.+.. ....+.++..
T Consensus 264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~---s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~ 340 (493)
T TIGR02730 264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVK---SPSFLSLHLGVKADVLPPGTECHHILLEDW 340 (493)
T ss_pred EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccC---CCceEEEEEEecCccCCCCCCccEEecchh
Confidence 999999999999999975 33443344311 11111111122211 1123333444566543321 1122333421
Q ss_pred CCCCCCCceEEEEEeCCC-CccCCCCeEEEEEEEe
Q 011414 391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSAL 424 (486)
Q Consensus 391 ~~~~~~~~~v~v~~~~~~-~~~~P~G~~vi~~~t~ 424 (486)
.......+.+|+...+.. ++.+|+|+.++++.+.
T Consensus 341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~ 375 (493)
T TIGR02730 341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTP 375 (493)
T ss_pred hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecC
Confidence 111123567888877654 6889999999887664
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.94 E-value=8.4e-24 Score=221.47 Aligned_cols=351 Identities=15% Similarity=0.153 Sum_probs=209.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 011414 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (486)
..||||||||++||+||..|+++ |++|+|+|+++++||+++|.+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999997532
Q ss_pred cccccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHH
Q 011414 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (486)
Q Consensus 98 ~~~~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~ 176 (486)
+|.+|+ |+++++... .+.+++.++|+..+..+......+++..+|+++++|.+..+.++...+++.+|.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 355677 688886655 488889999987765443333345554238888888876666666656655544
Q ss_pred HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHH
Q 011414 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (486)
Q Consensus 177 ~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~ 256 (486)
.+. +...... ....+.|+.+|+++.. .+.+.+.+...+....+..++ +++++..++.++..
T Consensus 122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIRPA--------------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhccCC--------------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence 332 1111000 0123589999998653 344333233222222233332 33566655544322
Q ss_pred HHHh-------h------------hcccCCCcc-eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEE
Q 011414 257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (486)
Q Consensus 257 ~~~s-------~------------g~~g~~~g~-~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (486)
.... + ..+....+. +.+++||+++|+++|++.+. .++|+++++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 2111 0 001111122 56789999999999887553 2789999999999876 333 46
Q ss_pred EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC-CCCCCceEEEeCCCCCCC
Q 011414 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP 394 (486)
Q Consensus 317 V~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~-~~~~~~~~~~~p~~~~~~ 394 (486)
|++++|+++.||+||++ |...+..++. +++...........+..+.+..+.+++++ ........+..|...
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~----~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~--- 330 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLLS----ELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSS--- 330 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHhc----ccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCC---
Confidence 77788888999999964 5443344321 12222222223334566777777787763 322233444444332
Q ss_pred CCCceEEEEEeCCC--CccCCCCeEEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414 395 EQVTSIRVLQLGGN--LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKL 445 (486)
Q Consensus 395 ~~~~~v~v~~~~~~--~~~~P~G~~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~ 445 (486)
...+....+++. +..+|+|..++.+...... ....++.++.+++.|.+.
T Consensus 331 --~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~ 386 (462)
T TIGR00562 331 --KFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV 386 (462)
T ss_pred --CCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 112233333322 4678988777655432211 113345555555555543
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.93 E-value=6.6e-23 Score=216.56 Aligned_cols=291 Identities=17% Similarity=0.171 Sum_probs=180.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
..++||||||||++||+||++|+++ |++|+|||+++++||++.|++.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~------------------------------- 58 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED------------------------------- 58 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC-------------------------------
Confidence 3567999999999999999999999 99999999999999999997643
Q ss_pred ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcc-cceeeeccCCceeecCCCHHHHhhcccCChHhHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~-~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~ 177 (486)
.|.+|. ||+.+...++.+..|.+.++.+++.|... ...|++. +|+++++|.+..+.+....+++.+|..
T Consensus 59 --------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~ 128 (496)
T PLN02576 59 --------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR 128 (496)
T ss_pred --------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence 355676 58888777766666666688777665432 2335543 888999998876666666677666554
Q ss_pred HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHH
Q 011414 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (486)
Q Consensus 178 l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~ 257 (486)
+..-. . ..... .....+.|+.+|+++. +.+.+.+.+...+....+..++ .++|+..+++.+..+
T Consensus 129 ~~~~~--~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~ 192 (496)
T PLN02576 129 AGLGA--F-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL 192 (496)
T ss_pred HhHHH--h-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence 32211 1 11000 0123468999999975 5555544443332222233333 346666655544332
Q ss_pred HHhhhc--------c----------------c-CCCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCC
Q 011414 258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS 311 (486)
Q Consensus 258 ~~s~g~--------~----------------g-~~~g~~~~p~gG~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~ 311 (486)
....|. . . .....+.+++||+++|+++|++ .+| ++|++|++|++|..+ +
T Consensus 193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~---~l~~~~i~l~~~V~~I~~~--~ 267 (496)
T PLN02576 193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAK---RLGKDKVKLNWKVLSLSKN--D 267 (496)
T ss_pred HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHH---hhCcCcEEcCCEEEEEEEC--C
Confidence 111000 0 0 0012256789999999998875 446 789999999999876 3
Q ss_pred CeEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414 312 GSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (486)
Q Consensus 312 g~~~gV~~--~~G~-~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~ 376 (486)
+..+.|++ .+|+ ++.||+||++ |...+..++.+.. ++..+.+ +...+..+.+..+.+++++
T Consensus 268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l-~~~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADAL-PEFYYPPVAAVTTSYPKEA 332 (496)
T ss_pred CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHh-ccCCCCceEEEEEEEchHH
Confidence 32133433 3554 6999999964 5444344432212 2222223 2233445666666677753
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.93 E-value=5.2e-23 Score=213.61 Aligned_cols=348 Identities=15% Similarity=0.144 Sum_probs=195.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (486)
+|||||||++||+||..|+++|++|+|||+++++||+++++..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----------------------------------- 45 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----------------------------------- 45 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence 599999999999999999999999999999999999999987543
Q ss_pred CCCceEeecCCCEEEec-ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHHHH
Q 011414 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (486)
Q Consensus 104 ~~~~~~idl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~fl 182 (486)
|.+|. |.++++. ...+.+++.+.|+.....+......+.+ +|+.++++ +...+++...+++.++..+...+
T Consensus 46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLG-TPLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCC-CHHHHHcCCCCCHHHHHHhHHHH
Confidence 22233 2343332 3367788888888655555443332322 55555443 22344444555555555433222
Q ss_pred HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhh
Q 011414 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (486)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g 262 (486)
...... . ...+..+.++.+||+++..++..+.++.. +....+..++ +++++...+..+..+...
T Consensus 118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEP-LLESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHH-HHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111110 0 01234568999999986544444444432 1111122222 235665554444322111
Q ss_pred cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 011414 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (486)
Q Consensus 263 ~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l 341 (486)
........+.+|+||++.|+++|.+.+...|++|+++++|++|..+ +++++++. .+|+++.||+||++ |...+.++
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0000011267899999999999999999999999999999999876 55555554 67888999999964 43333444
Q ss_pred CcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCC-CCccCCCCeEEEE
Q 011414 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPLGMFVLY 420 (486)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~-~~~~~P~G~~vi~ 420 (486)
+ + +++.......+...........+-+++++.+ ...+.++.... ....+...+. ....+|+|+.+++
T Consensus 259 l-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~ 326 (434)
T PRK07233 259 V-P---DLPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY 326 (434)
T ss_pred c-C---CCcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence 3 1 1211111111222333445555556777643 22233221111 1111222332 2345667877766
Q ss_pred EEEeeccC-----cchHHHHHHHHHHHHhh
Q 011414 421 FSALCDEV-----NQGKKLLHAALSALQKL 445 (486)
Q Consensus 421 ~~t~~~~~-----~~~~~~l~~~~~~l~~~ 445 (486)
++.++... ...++.++.+++.|-+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 356 (434)
T PRK07233 327 LPKYLPGDHPLWQMSDEELLDRFLSYLRKM 356 (434)
T ss_pred EeeecCCCChhhcCCHHHHHHHHHHHHHHh
Confidence 55544321 12344555555555543
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=5.4e-23 Score=215.35 Aligned_cols=325 Identities=12% Similarity=0.146 Sum_probs=190.1
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccc
Q 011414 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (486)
.+|||||||++||+||..|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3699999999999999999986 48999999999999999997533
Q ss_pred ccccccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCC--------HHHHhhc
Q 011414 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (486)
Q Consensus 97 ~~~~~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s--------~~~~f~~ 167 (486)
.|.+|+ |+++++.. ..+.+++.+.|+..+..+..-...|++. +|++.++|.+ ..+.++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 245666 57777544 4577888999988766554433445554 5666666543 2233333
Q ss_pred ccCChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhch
Q 011414 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (486)
Q Consensus 168 ~~l~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~ 247 (486)
..++...|... +...... . .....+.|+.+|+++..-++..+.++. .+...-+..++ .++++
T Consensus 121 ~~~~~~~~~~~------~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~-p~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVA------LKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIA-PVLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHh------hhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHH-HHhcccccCCc--ccccH
Confidence 33433322211 1111100 0 012357899999997533333333332 21122233332 23555
Q ss_pred hhHHHHHHHHHHhhhcc------------cCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEE
Q 011414 248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (486)
Q Consensus 248 ~~~l~~~~~~~~s~g~~------------g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~ 315 (486)
...+..+..+....+.+ ......+.+++||+++|+++|++.+.. ++|+++++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 44444443333221110 011122778999999999999876543 689999999999876 444 5
Q ss_pred EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC-CCCceEEEeCCCCCC
Q 011414 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF 393 (486)
Q Consensus 316 gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~-~~~~~~~~~p~~~~~ 393 (486)
.|++.+|+++.||+||++ |...+..|+ .+++++....++ ....+....+.++++... ......+++|+..
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-- 329 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS-- 329 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence 777788888999999964 544444543 345555554444 234566666677765321 1223444555432
Q ss_pred CCCCceEEEEEeCCC--CccCCCCeEEEEEE
Q 011414 394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS 422 (486)
Q Consensus 394 ~~~~~~v~v~~~~~~--~~~~P~G~~vi~~~ 422 (486)
.-.+-...+.+. ...+|++..++.++
T Consensus 330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~ 357 (463)
T PRK12416 330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF 357 (463)
T ss_pred ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence 111112222322 23567777766654
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=1.3e-22 Score=211.75 Aligned_cols=325 Identities=14% Similarity=0.168 Sum_probs=185.7
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (486)
+|||||||++||+||..|+++| ++|+|||+++++||+++|++.++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 6999999999999999999988 89999999999999999976432
Q ss_pred cCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCH--------HHHhhcccCCh
Q 011414 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (486)
Q Consensus 102 ~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~--------~~~f~~~~l~~ 172 (486)
+.+|+ |++.++..+ .+.+++.+.|+..+..+......+++. +|+.+.+|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 34566 465443333 577888888887654433212234443 67777776421 01111112221
Q ss_pred HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (486)
Q Consensus 173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~ 252 (486)
.++.+. ...... .......++|+.+||++. +++...+.+...+....+..++ +++++...+.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111110 001000 001234578999999863 4444433333222222233232 3355555444
Q ss_pred HHHHHHHhhh-----------ccc-CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC
Q 011414 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (486)
Q Consensus 253 ~~~~~~~s~g-----------~~g-~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (486)
.+..+....+ ... .....+.++++|++.|+++|++.+... +|+++++|++|..+ ++. +.|.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 4333222111 000 001225689999999999887755332 89999999999876 443 567778
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCce
Q 011414 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399 (486)
Q Consensus 321 ~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 399 (486)
+|+++.||+||++ |...+.++. .++++.+.. +...+..+.+..+.+++++...+....+.+++.. +.+
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT 326 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence 9999999999965 443334442 223332222 2334556777777788885322333344444321 122
Q ss_pred EEEE-EeCCC-CccCCCCeEEEEEEE
Q 011414 400 IRVL-QLGGN-LAVCPLGMFVLYFSA 423 (486)
Q Consensus 400 v~v~-~~~~~-~~~~P~G~~vi~~~t 423 (486)
+... ..+.. ...+|+|..++.++.
T Consensus 327 ~~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 327 ITACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence 3322 22322 466788887777655
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.91 E-value=2.5e-22 Score=203.44 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=213.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (486)
.|+|||||++||+||++|+++| .+|+|||+.+++||..+|+..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~---------------------------------- 47 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID---------------------------------- 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence 4899999999999999999999 9999999999999999998654
Q ss_pred cCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHHHH
Q 011414 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (486)
Q Consensus 102 ~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l~~ 180 (486)
.|.+|. ||+.++.+ ...++++.++|.++.+.+..-...|++. +|+++++|... ++.-+.+.......+.+
T Consensus 48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 355666 57777665 5789999999999888877655556665 89999999874 44433332212233333
Q ss_pred HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHh
Q 011414 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260 (486)
Q Consensus 181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s 260 (486)
++....... ......+.++.+|++++. .+++.+.+...+.-.-|..+. +.+|+..+...+..-...
T Consensus 119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~f-G~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~ 184 (444)
T COG1232 119 ALQEFIRPK-----------SWEPKQDISVGEFIRRRF-GEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK 184 (444)
T ss_pred HHHhhhccc-----------CCCCCCCcCHHHHHHHHH-hHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence 332221110 012456789999998532 233333222111111122222 335665322222221111
Q ss_pred hhcc-------cC-----CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcC
Q 011414 261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (486)
Q Consensus 261 ~g~~-------g~-----~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~ 328 (486)
.+.. +. ..+.|.+++||+++|+++|.+.+... |+++++|+.|..+ ... +++.+.+|.++.||
T Consensus 185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D 258 (444)
T COG1232 185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD 258 (444)
T ss_pred hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence 1111 00 01247789999999999999877666 9999999999876 222 45556899999999
Q ss_pred EEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCC-CCCCCCceEEEeCCCCCCCCCCceEEEEEeC
Q 011414 329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG 406 (486)
Q Consensus 329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~-~~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~ 406 (486)
.||++ |.+.+..++.+ ..... .+.+ .....++.++..++++ ....++...+.+|.... . +.....+
T Consensus 259 ~VI~t~p~~~l~~ll~~--~~~~~---~~~~-~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~~ 326 (444)
T COG1232 259 GVISTAPLPELARLLGD--EAVSK---AAKE-LQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITFH 326 (444)
T ss_pred eEEEcCCHHHHHHHcCC--cchhh---hhhh-ccccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEEe
Confidence 99964 55555555422 11111 1111 1233466666667774 33334566777764321 1 3333333
Q ss_pred CC--CccCCCCeEEEEEEEeeccCc-----chHHHHHHHHHHHHhh
Q 011414 407 GN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL 445 (486)
Q Consensus 407 ~~--~~~~P~G~~vi~~~t~~~~~~-----~~~~~l~~~~~~l~~~ 445 (486)
+. +...|+|+.++++........ ..++.++.+++.|-+.
T Consensus 327 S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~ 372 (444)
T COG1232 327 SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL 372 (444)
T ss_pred cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence 33 467799999999987654211 1356666666666654
No 16
>PRK07208 hypothetical protein; Provisional
Probab=99.91 E-value=2.1e-21 Score=204.25 Aligned_cols=353 Identities=15% Similarity=0.182 Sum_probs=194.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
||...||||||||++||+||..|+++|++|+|+|+++++||++.|...++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------ 50 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------ 50 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence 35678999999999999999999999999999999999999999875432
Q ss_pred ccccCCCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~ 177 (486)
|.+|. |+++++..+ .+.+++.+.+.......... ..+++. +|+...+|.+..+.+. .+++.++..
T Consensus 51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~ 116 (479)
T PRK07208 51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK 116 (479)
T ss_pred ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence 34566 577766544 56777777775222222111 123332 6788888865433332 233333222
Q ss_pred HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChH-HHHHHH-HHHhhccCCchhhhhhhchhhHHHHH-
Q 011414 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK-IKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL- 254 (486)
Q Consensus 178 l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~-l~~~l~-~~i~~~~~~~~~~~~~~s~~~~l~~~- 254 (486)
.. ...+.... .....+.++.+|+++. +.+. .+.++. +...+ +..++ +++++..++.++
T Consensus 117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~ 177 (479)
T PRK07208 117 CG--ASYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK 177 (479)
T ss_pred HH--HHHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence 11 11111110 0012468999999963 3333 333332 22222 22232 235555433221
Q ss_pred --------HHHHHhh-h-------cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEE
Q 011414 255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318 (486)
Q Consensus 255 --------~~~~~s~-g-------~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~ 318 (486)
...+... + ..+.....+.||+||+++|+++|.+.++..|++|++|++|++|..+. ++.++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~ 256 (479)
T PRK07208 178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVV 256 (479)
T ss_pred CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEE
Confidence 1111111 0 00100123778999999999999999999999999999999998872 34344444
Q ss_pred e--CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCC
Q 011414 319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLF 393 (486)
Q Consensus 319 ~--~~G~--~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~~~~~ 393 (486)
. .+|+ ++.||+||++ |...+.+++. ++++.......+......+..+.+.++++.... . ..+.+|+....
T Consensus 257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~~ 331 (479)
T PRK07208 257 VNDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-D-NWIYIHDPDVK 331 (479)
T ss_pred EEcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-C-ceEEecCCCCc
Confidence 3 2454 5899999975 4332233321 122222222222333444555555667663211 1 23334432211
Q ss_pred CCCCceEEEEEeCC-CCccCCCCe-EEEEEEEeecc-----CcchHHHHHHHHHHHHhh
Q 011414 394 PEQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDE-----VNQGKKLLHAALSALQKL 445 (486)
Q Consensus 394 ~~~~~~v~v~~~~~-~~~~~P~G~-~vi~~~t~~~~-----~~~~~~~l~~~~~~l~~~ 445 (486)
. -.+..++. +...+|+|+ ..+.+...+.. ....++.++.+++.|..+
T Consensus 332 ---~--~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l 385 (479)
T PRK07208 332 ---V--GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARL 385 (479)
T ss_pred ---c--ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHc
Confidence 0 11222222 246679987 44433332221 112356677777776663
No 17
>PLN02612 phytoene desaturase
Probab=99.91 E-value=2.5e-21 Score=206.20 Aligned_cols=295 Identities=15% Similarity=0.156 Sum_probs=182.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (486)
..||+|||+|++||+||++|+++|++|+|+|+++++||++.++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4689999999999999999999999999999999999999997531
Q ss_pred cCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeecc-CCcee--e----cCCC---HHHHhh-ccc
Q 011414 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDA-DAKLC--S----VPDS---RAAIFK-DKS 169 (486)
Q Consensus 102 ~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~-~g~~~--~----vp~s---~~~~f~-~~~ 169 (486)
.++.+|. |+++++.. ..+.++|.+.|+...++|......+.+.. ++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1234555 57776543 35788889999987777665443332211 12222 1 2222 112222 234
Q ss_pred CChHhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchh
Q 011414 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (486)
Q Consensus 170 l~~~~k~~l~~-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~ 248 (486)
+++.+|.++.. ++..... ......++.+.|+.+|+++++.++.+.+-+...+...-+..++ +++|+.
T Consensus 214 ls~~~kl~~~~~~~~~~~~----------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~ 281 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAIVG----------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQ 281 (567)
T ss_pred CCHHHHHHHHHhhhHHhcc----------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHH
Confidence 44444443221 1110000 0011224557899999999999987765332222111112222 235666
Q ss_pred hHHHHHHHHHHhhhcccCCCcceEeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEc
Q 011414 249 DGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (486)
Q Consensus 249 ~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A 327 (486)
..+..+..++.. +.+ ....++.|+. ..|+++|++.++.+|++|++|++|++|..++ ++++++|++.+|+++.|
T Consensus 282 ~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~a 355 (567)
T PLN02612 282 CILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEG 355 (567)
T ss_pred HHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEEC
Confidence 665555544321 222 1255677665 6799999998888999999999999998863 66677888889999999
Q ss_pred CEEEEC-CCCCCCCCCcccc--hhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414 328 HKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (486)
Q Consensus 328 ~~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~ 377 (486)
|+||++ |...+..|+.... .++....+.+ ....+.+..+.+++++.
T Consensus 356 d~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~ 404 (567)
T PLN02612 356 DVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK 404 (567)
T ss_pred CEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence 999964 4444344432111 1223223222 24457777777899874
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.91 E-value=2.1e-21 Score=202.72 Aligned_cols=296 Identities=17% Similarity=0.174 Sum_probs=179.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (486)
+|+|||+|++||+||++|+++|++|+|+|+++++||++.|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999987421
Q ss_pred CCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeee-ccCCcee--ecC---CCH---HHHhh-cccCCh
Q 011414 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (486)
Q Consensus 104 ~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~-~~~g~~~--~vp---~s~---~~~f~-~~~l~~ 172 (486)
.++.+|. |++++... ..+.++|.+.|+...+.|......|.. ..++... ..| ... .++++ ...++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234566 46766443 367788888998776666543332221 1122222 112 111 12222 223455
Q ss_pred HhHHHHHHHH-HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHH
Q 011414 173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (486)
Q Consensus 173 ~~k~~l~~fl-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l 251 (486)
.+|.++..-+ ...... .+...++.+.|+.+|+++.+.++.+++.+...+....+..++ .++|+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p--~~~S~~~~~ 189 (453)
T TIGR02731 122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINP--DELSMTVVL 189 (453)
T ss_pred HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHH
Confidence 5554433211 111000 011234567999999999999988766433222111122232 346777776
Q ss_pred HHHHHHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-----EE
Q 011414 252 NRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DI 325 (486)
Q Consensus 252 ~~~~~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~i 325 (486)
..+..++. ..++. ...+..|| ++.++++|.+.++..|++|++|++|++|..++ ++++++|++.+|+ ++
T Consensus 190 ~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~ 263 (453)
T TIGR02731 190 TALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEV 263 (453)
T ss_pred HHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEE
Confidence 66555442 22221 13345555 47899999999999999999999999998652 6667788887766 79
Q ss_pred EcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414 326 LSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (486)
Q Consensus 326 ~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~ 378 (486)
.||.||++ |...+.+++ +....-....+.+. ......+.++.+.+++++..
T Consensus 264 ~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~ 315 (453)
T TIGR02731 264 TADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT 315 (453)
T ss_pred ECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence 99999964 444444553 21110011112221 12244678888889998753
No 19
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.88 E-value=2e-20 Score=195.58 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=171.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (486)
+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999986321
Q ss_pred CCCceEeecCCCEEEecCh-HHHHHHHhcCcccccchhcccceeeeccCCceee--------cC-CCHHHHhhcccCChH
Q 011414 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--------VP-DSRAAIFKDKSLGLM 173 (486)
Q Consensus 104 ~~~~~~idl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~--------vp-~s~~~~f~~~~l~~~ 173 (486)
.+|.+|. |+++++... .+.+++.+.|+...+.+......|.. .+++... .| .....+++.+.++..
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 1345566 588876543 57778888888765544432222322 1333221 23 223466777888888
Q ss_pred hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhH
Q 011414 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (486)
Q Consensus 174 ~k~~l~~fl~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~ 250 (486)
+|.++.+.+.. ...... .. ...+......+.|+.+|+++++.++.+.+.+...++...+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 88775543311 111100 00 00011223456999999999998876444333332222222232 34677776
Q ss_pred HHHHHHHHHhhhcccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--eEEEEEeCCC---c
Q 011414 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (486)
Q Consensus 251 l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~-L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~ 323 (486)
+..++.+. .++.+ .-+.+++||.++ +.+.+.+.++..||+|+++++|++|..+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 66555332 22333 126789999876 678899999999999999999999988621 12 3677777554 5
Q ss_pred EEEcCEEEEC-CCCCCCCCC
Q 011414 324 DILSHKLVLD-PSFTVPGSL 342 (486)
Q Consensus 324 ~i~A~~VI~~-p~~~~~~l~ 342 (486)
++.||+||++ |......|+
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred EEECCEEEECCChHHHHhhC
Confidence 6899999964 544445554
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.87 E-value=5.8e-20 Score=193.80 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=171.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (486)
...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 44699999999999999999999999999999999999999987421
Q ss_pred ccCCCCceEeecCCCEEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCcee----ecC--CC---HHHHhhcccC
Q 011414 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (486)
Q Consensus 101 ~~~~~~~~~idl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~----~vp--~s---~~~~f~~~~l 170 (486)
..+.+|. |+++++.. ..+.++|.+.|+...+.+......|. ..+|+.. .+| .. ...+++...+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 1244555 57776543 36788899999876655543222232 2244431 122 21 1245556777
Q ss_pred ChHhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhch
Q 011414 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (486)
Q Consensus 171 ~~~~k~~l~~fl--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~ 247 (486)
++.+|.++..-+ . .+..... .. ...+.+....+.|+.+|+++++.++.+.+-+...++...+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 777776653211 1 0011000 00 00011223456999999999888875444333333332233333 44677
Q ss_pred hhHHHHHHHHHHhhhcccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--eEEEEEe---C
Q 011414 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (486)
Q Consensus 248 ~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~-L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~ 320 (486)
..++..+..+. .+..+ +-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ ++ ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 76666553221 11111 226799999995 999999999999999999999999998731 22 3788887 3
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCC
Q 011414 321 SGQDILSHKLVLD-PSFTVPGSL 342 (486)
Q Consensus 321 ~G~~i~A~~VI~~-p~~~~~~l~ 342 (486)
+++++.||.||++ |...+.+|+
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred CceEEECCEEEECCCHHHHHHhC
Confidence 4557899999964 444445554
No 21
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.87 E-value=4.9e-21 Score=186.94 Aligned_cols=71 Identities=32% Similarity=0.379 Sum_probs=63.7
Q ss_pred ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC--CCCCCCC
Q 011414 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSL 342 (486)
Q Consensus 270 ~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~--~~~~~l~ 342 (486)
.+.||+||||+++.++++.+..+|++|.+++.|++|..+ +|+++||+++||++++++.||+|.. .++.+|+
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 478999999999999999999999999999999999998 7999999999999999999997643 4555554
No 22
>PLN02268 probable polyamine oxidase
Probab=99.83 E-value=3e-19 Score=185.58 Aligned_cols=277 Identities=13% Similarity=0.134 Sum_probs=158.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (486)
.+|||||||++||+||..|.++|++|+|||+++++||++.|....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~----------------------------------- 45 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF----------------------------------- 45 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence 379999999999999999999999999999999999999985422
Q ss_pred CCCCceEeecCCCEEEec---ChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH-
Q 011414 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL- 178 (486)
Q Consensus 103 ~~~~~~~idl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l- 178 (486)
.+.+|+ |++++.. ..++.+++.+.|+..+-.. .+..+++..+...+.+.... ...++......+
T Consensus 46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 113 (435)
T PLN02268 46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDMD-----GNQVPQELVTKVG 113 (435)
T ss_pred ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecCC-----CCCCCHHHHHHHH
Confidence 234566 6888753 2357788888888544211 11111111010100000000 001111111112
Q ss_pred ---HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCC-C------hHHHHHHHHHH-hhc-cCCchhhhhhhc
Q 011414 179 ---MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AMA-DYDQEVSEYVLK 246 (486)
Q Consensus 179 ---~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l-~------~~l~~~l~~~i-~~~-~~~~~~~~~~~s 246 (486)
.+++..+.... .....+.|+.+|++++.. . ...++++.+.+ .+. -+..++ +++|
T Consensus 114 ~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls 179 (435)
T PLN02268 114 ETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTIS 179 (435)
T ss_pred HHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCc
Confidence 22222221110 012456789998765321 1 12233332211 010 122222 2233
Q ss_pred hhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEE
Q 011414 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (486)
Q Consensus 247 ~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~ 326 (486)
+... . ....+. |...++.+|++.|+++|++ |..|+++++|++|..+ ++. +.|++.+|+++.
T Consensus 180 ~~~~-------~-~~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ 240 (435)
T PLN02268 180 LKSW-------D-QEELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFV 240 (435)
T ss_pred hhhc-------C-CccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEE
Confidence 3210 0 000010 1124678899999998854 5579999999999876 333 467778898999
Q ss_pred cCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCC
Q 011414 327 SHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (486)
Q Consensus 327 A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~ 379 (486)
||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus 241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 9999954 5544433223466778777666556667788899998999985443
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.83 E-value=5.1e-18 Score=175.27 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=168.1
Q ss_pred HHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccCCCCceEeecCCC
Q 011414 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (486)
Q Consensus 36 ~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idl~Gp 115 (486)
+||.+|+++|++|+|||+++++||++.|++.++. .+.+|. |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999875431 123566 57
Q ss_pred EEEecC-hHHHHHHHhcCcccccchhcccceeeeccCCce--e---ecCCC---HHHHhhcccCChHhHHHHHHHHHHHH
Q 011414 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL--C---SVPDS---RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (486)
Q Consensus 116 ~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~--~---~vp~s---~~~~f~~~~l~~~~k~~l~~fl~~~~ 186 (486)
+.++.. ..+.+++.+.|+.....+.. ....++..++.. . ++|.. ...+.+...+++.++.++.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 777653 46788888889877655421 221222222221 1 12221 11233456677777777766654433
Q ss_pred hhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccC
Q 011414 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (486)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~ 266 (486)
... ..++.+.|+.+|+++++.++.+.+.+...+....+..++ +++|+..++..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123457899999999888877776544322222233333 33566554443322 1211111
Q ss_pred CCcceEeecCCcchHH-HHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 011414 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (486)
Q Consensus 267 ~~g~~~~p~gG~~~L~-qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~ 344 (486)
...+.||+||++++. ++|.+.++..|++|++|++|++|..+ ++++..+...+|+++.||+||++ |...+..++ +
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~ 260 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P 260 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence 112789999998776 55888888899999999999999887 44433222357888999999964 544444543 2
Q ss_pred cchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (486)
Q Consensus 345 ~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~ 376 (486)
++... ..+ +...+..+.+..+.+++++
T Consensus 261 -~~~~~---~~l-~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 261 -GEDLG---ALL-TALGYSPITTVHLRLDRAV 287 (419)
T ss_pred -CchHH---HHH-hhcCCcceEEEEEEeCCCc
Confidence 11221 122 2224455667777788886
No 24
>PLN02529 lysine-specific histone demethylase 1
Probab=99.82 E-value=1.4e-17 Score=179.38 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=165.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (486)
...||+|||+|++||+||..|+++|++|+|||+++++||++.|..+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 567999999999999999999999999999999999999999975421
Q ss_pred ccCCCCceEeecCCCEEEecCh--HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 101 ~~~~~~~~~idl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
....+.+|+ |++++.... ++..+..+.|+..+. .. +...++..+|........ . .+ + ..+
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~-~~--~~~~~~~~~G~~v~~~~~--~-----~~---~-~~~ 268 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHK-VR--DNCPLYKPDGALVDKEID--S-----NI---E-FIF 268 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCccc-cC--CCceEEeCCCcCcchhhh--h-----hH---H-HHH
Confidence 001245677 688885432 455666666654321 11 111133335543311100 0 00 0 012
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~ 252 (486)
.+++..+..+.... .....+.|+.+|++++. +++..+.++.+.++...+....+ ++..
T Consensus 269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~L---- 332 (738)
T PLN02529 269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSDL---- 332 (738)
T ss_pred HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHHh----
Confidence 22222222211000 01245688999998543 55555555544332111111110 1111
Q ss_pred HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.+..+....+ +. ..|...++.||++.|+++|++ +..|+||++|++|..+ ++. +.|. .+++++.||+||+
T Consensus 333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VIV 401 (738)
T PLN02529 333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVLC 401 (738)
T ss_pred hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEEE
Confidence 1112221111 11 113356789999999998875 2359999999999886 333 4565 4567899999997
Q ss_pred C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (486)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~ 376 (486)
+ |...+.+....+.|+||+.+....+...++.+.|.++.++++|
T Consensus 402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 5 4444332223477888887776667778889999999999985
No 25
>PLN02676 polyamine oxidase
Probab=99.82 E-value=2.3e-18 Score=180.30 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=161.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
...+||||||||++||+||..|+++|. +|+|||+++++||++.+....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~------------------------------- 72 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA------------------------------- 72 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC-------------------------------
Confidence 457899999999999999999999998 699999999999999986543
Q ss_pred ccccCCCCceEeecCCCEEEec-----ChHHHHHHHhcCccccc-chhcccceeeeccCCceeecCCCHHHHhhcccCCh
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL 172 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~-----~~~l~~~l~~~~~~~y~-ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~ 172 (486)
.+.+|+ |++++.. ...+.+++.+.|+..+. .+... ...++..+|+.+ +. +...
T Consensus 73 --------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------ 131 (487)
T PLN02676 73 --------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------ 131 (487)
T ss_pred --------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------
Confidence 234555 4676632 34677788888876542 22221 222333345433 11 1000
Q ss_pred HhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChHHHHHHHHHHhhccCCchhhhhhhchhh
Q 011414 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (486)
Q Consensus 173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~ 249 (486)
.-...+.++...+....... . ..++.+.++ .+++.+.. ..+..+. ..+......+..++ ..+|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~ 200 (487)
T PLN02676 132 KSMKVADASDEFGENLSISL------S--AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN 200 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhh------c--ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence 00011111111111111000 0 112334555 33444322 2221111 11111101011111 1123322
Q ss_pred HHHHHHHHHHhhhcccCCCcceEee--cCCcchHHHHHHHHHHH------cCcEEEeCCceeEEEEecCCCeEEEEEeCC
Q 011414 250 GINRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321 (486)
Q Consensus 250 ~l~~~~~~~~s~g~~g~~~g~~~~p--~gG~~~L~qal~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~ 321 (486)
.+. ...+..+|. .-.+. .+|++.|+++|++.... .+.+|+||++|++|..+ ++. +.|++.+
T Consensus 201 ~~~-----~~~~~~~g~---~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~ 269 (487)
T PLN02676 201 TEP-----NPTFVDFGE---DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTED 269 (487)
T ss_pred cCc-----ccccccCCC---ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECC
Confidence 110 001111221 12233 68999999998875422 24689999999999886 333 5788889
Q ss_pred CcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414 322 GQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (486)
Q Consensus 322 G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~ 378 (486)
|++++||+||+. |...+.+....++|+||..+....+...++.+.|.++.+++||=+
T Consensus 270 G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~ 327 (487)
T PLN02676 270 GSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP 327 (487)
T ss_pred CCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence 999999999965 544444311358889998777666777788999999999998543
No 26
>PLN02568 polyamine oxidase
Probab=99.80 E-value=6.9e-18 Score=178.00 Aligned_cols=299 Identities=10% Similarity=0.064 Sum_probs=163.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccc
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE 92 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (486)
+++..+||||||||++||+||..|+++| ++|+|||+++++||+++|+.+.
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~------------------------- 55 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG------------------------- 55 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence 3556789999999999999999999988 9999999999999999997543
Q ss_pred ccccccccccCCCCceEeecCCCEEEec--ChHHHHHHHhcCccccc-chhccc----ceeeeccCCceeecCCCHHHHh
Q 011414 93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSID----ATFMLDADAKLCSVPDSRAAIF 165 (486)
Q Consensus 93 ~~~~~~~~~~~~~~~~~idl~Gp~ll~~--~~~l~~~l~~~~~~~y~-ef~~~~----~~~~~~~~g~~~~vp~s~~~~f 165 (486)
.|.+|+ |++++.. ...+.+++.+.|+.... .|...+ ....+..+|. .++. ++.
T Consensus 56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~ 115 (539)
T PLN02568 56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGF--EVDP---SIV 115 (539)
T ss_pred --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCc--CCCH---HHH
Confidence 244566 5777753 34677888888875442 222211 1112222332 1111 010
Q ss_pred hcccCChHhHHHHHHHHHHHHhhcccCccc--cccccc---cc----cccCCcHHHHHHhcCCChHHHHHHHHHHhhccC
Q 011414 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESE--ENNVRI---SE----EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236 (486)
Q Consensus 166 ~~~~l~~~~k~~l~~fl~~~~~~~~~~~~~--~~~~~~---~~----~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~ 236 (486)
. .-...+..++..+.......... .....+ .. ...+.++.+||++.- ...+.....-.+ ...+
T Consensus 116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~~-~~~~ 187 (539)
T PLN02568 116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADEQ-IKGY 187 (539)
T ss_pred H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccchh-hccc
Confidence 0 00111222222222110000000 000000 00 012358888887411 000000000000 0000
Q ss_pred CchhhhhhhchhhHHHHHHHHHH-----------hh---hcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCce
Q 011414 237 DQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (486)
Q Consensus 237 ~~~~~~~~~s~~~~l~~~~~~~~-----------s~---g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V 302 (486)
..+. .+.+....+..+..+.. +. ..+...+|.+.++.||++.|+++|++.+ .++.|++|++|
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V 263 (539)
T PLN02568 188 GGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKV 263 (539)
T ss_pred cchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeE
Confidence 0000 00111111111111110 00 1111112446788999999999997744 35689999999
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----cccchhhhhhhhhhccCCCcceEEEEEEEecCCC
Q 011414 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (486)
Q Consensus 303 ~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~----~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~ 376 (486)
++|..+ ++. +.|++++|+++.||+||++ |...+.+-. ..++|+||+.+....+...++.+.|.++.++++|
T Consensus 264 ~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 264 TRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred EEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 999886 333 5677889999999999975 544433210 1378889887766557777888999999999985
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.80 E-value=7.5e-17 Score=174.42 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=164.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (486)
...+|||||||++||+||..|++.|++|+|+|+++++||++.++...+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 4579999999999999999999999999999999999999999875430
Q ss_pred ccCCCCceEeecCCCEEEecC--hHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 101 ~~~~~~~~~idl~Gp~ll~~~--~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
.-.+.+|+ |++++... ..+..++.+.|+..+. ...... ++..+|+.+..... + ..+ ..+
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~--~--------~v~-~~f 346 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEID--S--------KIE-ASF 346 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhh--h--------hHH-HHH
Confidence 01234566 57877543 2566677777764331 111111 22235543321100 0 001 122
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~ 252 (486)
.+++..+.++..... . .....+.++.+|++++ ..++..+.++.+.++...+.... ....+
T Consensus 347 ~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls~L- 412 (808)
T PLN02328 347 NKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMSNL- 412 (808)
T ss_pred HHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHHHH-
Confidence 333333222110000 0 0012457888888743 23444444433322221111100 00111
Q ss_pred HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.+..+.... .+ ...+.+.+..||++.|+++|++.+ + |++|++|++|..+ ++. +.| +.+|++++||+||+
T Consensus 413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VIv 481 (808)
T PLN02328 413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVLC 481 (808)
T ss_pred Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEEE
Confidence 111111100 01 111335678899999999997643 3 9999999999886 333 345 46788999999997
Q ss_pred C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (486)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~ 377 (486)
+ |...+....+.+.|+||..+....++..++.+.|.++.++++|=
T Consensus 482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 5 54444421124678888877666577788899999999999853
No 28
>PLN03000 amine oxidase
Probab=99.78 E-value=2.2e-16 Score=170.77 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=159.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (486)
...||||||+|++||.||..|++.|++|+|+|+++++||++.|..+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g-------------------------------- 230 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA-------------------------------- 230 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence 468999999999999999999999999999999999999999986542
Q ss_pred ccCCCCceEeecCCCEEEecCh--HHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 101 ~~~~~~~~~idl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
....+.+|+ |.+++.... .+..++.+.|+..+ .+..... ++..+|+.. +...... ....+
T Consensus 231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~---------ve~~f 292 (881)
T PLN03000 231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLK---------VEVAF 292 (881)
T ss_pred ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhh---------HHHHH
Confidence 011356788 588886543 45556677777533 2222122 222366543 2211100 00111
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~ 252 (486)
.+++..+..+..... ....+.++.++++. ..+.+..+.++.+.++...+.... ....+.
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as------~ls~LS 357 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG------LVSKLS 357 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc------CHHHHH
Confidence 222222211110000 01123444443331 122333233332221111111000 000000
Q ss_pred HHHHHHHhhhcccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 253 ~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
+..+.... .+.. .+......||++.|+++|++.+ .|+|+++|++|..+ ++. +.|++ +++++.||+||+
T Consensus 358 -l~~wdqd~-~~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 358 -LAFWDQDD-PYDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred -HHHhhhcc-cccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 11111101 1111 1235568899999999998644 39999999999886 333 45654 456899999997
Q ss_pred C-CCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (486)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~ 377 (486)
+ |...+..-.+.+.|+||+.+....++..++.+.|.++.++++|=
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW 471 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW 471 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 5 55544421135788999887776678888999999999999853
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.78 E-value=3e-18 Score=169.95 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=76.8
Q ss_pred eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 011414 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL 349 (486)
Q Consensus 271 ~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l 349 (486)
.+.+.|||+.|++||+ +.+|..|.++++|.+|.++. +| +.|++.+.+++.+|.||+. |..++..+ .++|.+
T Consensus 201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI--~f~P~l 272 (450)
T COG1231 201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQI--DFAPLL 272 (450)
T ss_pred hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhc--ccCCCC
Confidence 4566799999999986 57899999999999998862 33 5777666578999999976 44443443 477777
Q ss_pred hhhhhhhccCCCcceEEEEEEEecCCCC
Q 011414 350 QESFQAFSLSDNKGKVARGICITRSSLK 377 (486)
Q Consensus 350 ~~~~~~l~~~~~~~~v~r~i~i~~~~~~ 377 (486)
+..+.+......++...|..+-+++||=
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhh
Confidence 7777776677788888898888999963
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.71 E-value=1.6e-15 Score=157.54 Aligned_cols=241 Identities=13% Similarity=0.186 Sum_probs=145.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEIS 94 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (486)
++...+|+|||||++||+||++|++. |++|+|||+++++||++.++....
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-------------------------- 72 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-------------------------- 72 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc--------------------------
Confidence 44567999999999999999999996 689999999999999998864321
Q ss_pred ccccccccCCCCceEeecCCCEEEecChHHHHHHHhc------C---cccccchhccccee----eeccCCceeecCCCH
Q 011414 95 NYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPDSR 161 (486)
Q Consensus 95 ~~~~~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~------~---~~~y~ef~~~~~~~----~~~~~g~~~~vp~s~ 161 (486)
.+|.++. ||.+......+.++|.+. | .++|..|...++.+ ++..+|....
T Consensus 73 -----------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----- 135 (576)
T PRK13977 73 -----------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----- 135 (576)
T ss_pred -----------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE-----
Confidence 1233333 344322222444554332 1 23455555554442 1111222222
Q ss_pred HHHhhcccCChHhH--HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHHhhccCCch
Q 011414 162 AAIFKDKSLGLMEK--NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQE 239 (486)
Q Consensus 162 ~~~f~~~~l~~~~k--~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~ 239 (486)
...+.+..| ..|++++- .. .++..+.++.||++...+....-.+.. .+..+ .
T Consensus 136 -----~~~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~~w~---t~FaF--~ 189 (576)
T PRK13977 136 -----TDKFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWYYWR---TMFAF--E 189 (576)
T ss_pred -----CcCCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHHHHH---HHHCC--c
Confidence 223333333 33433321 11 124567899999997555432222211 22212 1
Q ss_pred hhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCC--CeEEE
Q 011414 240 VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKG 316 (486)
Q Consensus 240 ~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~g 316 (486)
+..|+.+....+.+|+.-+.+.+... ++.+.+|- .-.|++.|.+.++..|++|+++++|++|..+.++ +++++
T Consensus 190 ---~whSA~E~rry~~rf~~~~~~l~~~s-~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vtg 265 (576)
T PRK13977 190 ---KWHSALEMRRYMHRFIHHIGGLPDLS-GLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATA 265 (576)
T ss_pred ---hhhHHHHHHHHHHHHHHhhccCCccc-cccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEE
Confidence 23578887777777776665544322 24455554 3589999999999999999999999999874113 67888
Q ss_pred EEeC-CCc--E---EEcCEEEE
Q 011414 317 VRLA-SGQ--D---ILSHKLVL 332 (486)
Q Consensus 317 V~~~-~G~--~---i~A~~VI~ 332 (486)
|.+. +|+ + ..+|.||+
T Consensus 266 I~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 266 IHLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEEeCCceeEEEecCCCEEEE
Confidence 8774 332 2 35777874
No 31
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.68 E-value=2e-14 Score=140.51 Aligned_cols=246 Identities=18% Similarity=0.230 Sum_probs=150.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEE--EccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~Vlv--lE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (486)
..+|+|+|||++||++|++|++.+-+|+| +|+.+|+||-..|..-+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 46899999999999999999999887654 99999999999982211
Q ss_pred cccCCCCceEeecCCCEEEecChH----HHHHHHhcCccccc-chhcccc----eeeeccCCceeecCCCHHHHhhcccC
Q 011414 100 LLSQHPRNFNLDVSGPRVLFCADH----AVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFKDKSL 170 (486)
Q Consensus 100 ~~~~~~~~~~idl~Gp~ll~~~~~----l~~~l~~~~~~~y~-ef~~~~~----~~~~~~~g~~~~vp~s~~~~f~~~~l 170 (486)
+.|-++. ||.-+-..++ ..+++.++|.++-+ .+..-.+ .|++ +.|++..+|.+...... ..+
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~-~~l 129 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLK-FSL 129 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCcccccccc-ccc
Confidence 2233333 4555433343 67788888886432 2222111 3444 47899999987544111 122
Q ss_pred ChHhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChHHHHHHHHHHhhccCCchhhhhhhchhh
Q 011414 171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (486)
Q Consensus 171 ~~~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~ 249 (486)
.+.-|..+..|+....+.. ......|.++.+|.++ |+ +++-+.+..+++.+.|..|+ .++|.+.
T Consensus 130 ~p~~k~L~~a~l~e~fr~~-----------~~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~ 194 (491)
T KOG1276|consen 130 QPFGKPLLEAFLRELFRKK-----------VSDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS 194 (491)
T ss_pred CcccchhHHHHHhhhcccc-----------CCCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence 3344444444443221110 0123457899999985 55 56666655555555566665 4577777
Q ss_pred HHHHHHHHHHhhhc---------ccC----------------CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeE
Q 011414 250 GINRLALYNSSIGR---------FQN----------------ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS 304 (486)
Q Consensus 250 ~l~~~~~~~~s~g~---------~g~----------------~~g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~ 304 (486)
.+..+......+|. ++. ..-+.+-.+||+..++++|++.....+..|.++-++..
T Consensus 195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~ 274 (491)
T KOG1276|consen 195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG 274 (491)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence 66655543332220 100 00012346889999999999988888888889999888
Q ss_pred EEEecCCCeEEEEEeCCCc
Q 011414 305 LLTDQNSGSYKGVRLASGQ 323 (486)
Q Consensus 305 I~~~~~~g~~~gV~~~~G~ 323 (486)
+.....++...+.+..+++
T Consensus 275 ~sk~~~~~~~~tl~~~~~~ 293 (491)
T KOG1276|consen 275 NSKSRSGNWSLTLVDHSGT 293 (491)
T ss_pred ccccccCCceeEeEcCCCc
Confidence 8654323333444445554
No 32
>PLN02976 amine oxidase
Probab=99.67 E-value=3.6e-15 Score=165.56 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=77.8
Q ss_pred cceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecC-------CCeEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 011414 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG 340 (486)
Q Consensus 269 g~~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~ 340 (486)
|..+.+.||++.|+++|++.+ .|+||++|++|..... ++..+.|.+.+|+++.||+||++ |...+..
T Consensus 926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence 345678999999999987643 4999999999987410 12225677889999999999975 4433332
Q ss_pred CCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414 341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (486)
Q Consensus 341 l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~ 378 (486)
-.+.|.|+||..+....+...++.+.|.++.++++|-+
T Consensus 1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 11358899998777755777889999999999998643
No 33
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2.9e-15 Score=155.56 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=79.1
Q ss_pred EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCcccchhhh
Q 011414 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQ 350 (486)
Q Consensus 272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~-~p~~~~~~l~~~~~~~l~ 350 (486)
....+|...+.++++. |..|+++..|.+|.+.. ++. +.|+..++..+.+|+||+ .|-..+..-.+.+.|+||
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 4568899989887754 99999999999999873 443 345556677799999885 343333331235889999
Q ss_pred hhhhhhccCCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 011414 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP 389 (486)
Q Consensus 351 ~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~~~~~~~~p~ 389 (486)
..+....++...+.+.|.++.+++.+=..........++
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~ 323 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE 323 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence 988887788888889999998888754222234445553
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.61 E-value=9.2e-15 Score=150.77 Aligned_cols=157 Identities=16% Similarity=0.108 Sum_probs=89.4
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhh
Q 011414 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (486)
Q Consensus 278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l 356 (486)
.+.+.+.+...+...|++|++|++|++|..+ ++++ .|.+.+|+++.||+||++ |...+.++ .+.++++......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i--~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKNI--LLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHTS--EEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhhh--hhccccccccccc
Confidence 4444455556667788999999999999998 5554 677899999999999975 44333331 2455666533333
Q ss_pred ccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCeEEEEEEE-eec---cCcch
Q 011414 357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG 431 (486)
Q Consensus 357 ~~~~~~~~v~r~i~i~~~~~~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~~P~G~~vi~~~t-~~~---~~~~~ 431 (486)
.+......+.+..+.++.++.+.. ....++.++.. ....++...+..... +.+..+..... ... .....
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 356 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF-----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD 356 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST-----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred ccccccCcceeEEEeeecccccccccccceecccCc-----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence 244455667777777888865443 23333333321 233444555544444 44433333322 211 12334
Q ss_pred HHHHHHHHHHHHhh
Q 011414 432 KKLLHAALSALQKL 445 (486)
Q Consensus 432 ~~~l~~~~~~l~~~ 445 (486)
++.++.+++.|...
T Consensus 357 e~~~~~~~~~L~~~ 370 (450)
T PF01593_consen 357 EEILERVLDDLRKI 370 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhc
Confidence 55566666655543
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.61 E-value=1.2e-13 Score=131.58 Aligned_cols=292 Identities=16% Similarity=0.134 Sum_probs=159.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (486)
...+|.|||+|++||+||..|++. ++|+++|+++++||+++|...+-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~-------------------------------- 53 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT-------------------------------- 53 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--------------------------------
Confidence 346899999999999999999875 68999999999999999985321
Q ss_pred ccCCCCceEeecCCCEEEecC---hHHHHHHHhcCcccccchhcccceeeeccCCce-eecCCCHHHHhhc--ccCChHh
Q 011414 101 LSQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-CSVPDSRAAIFKD--KSLGLME 174 (486)
Q Consensus 101 ~~~~~~~~~idl~Gp~ll~~~---~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~-~~vp~s~~~~f~~--~~l~~~~ 174 (486)
....+.+|. | .+++.. -.+..++...|+.....|.+..- .++ +|.+ +.--.....+|.. ..+.+
T Consensus 54 ---d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p-- 123 (447)
T COG2907 54 ---DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP-- 123 (447)
T ss_pred ---cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch--
Confidence 001233343 1 233221 26788888888877655544321 111 2222 2111111123321 11112
Q ss_pred HHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHHHHH--hhccCCchhhhhhhchhhHHH
Q 011414 175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN 252 (486)
Q Consensus 175 k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~~~i--~~~~~~~~~~~~~~s~~~~l~ 252 (486)
++.+++..+......... ..+ .....+.++.+||++.+.+...++-.++-+ +..+.+.. .++...+ .
T Consensus 124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~ 192 (447)
T COG2907 124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C 192 (447)
T ss_pred --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence 222223222221110000 011 123456899999999999877666444322 22221111 1111111 1
Q ss_pred HHHHHHHhhhcccCCCcc-eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414 253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (486)
Q Consensus 253 ~~~~~~~s~g~~g~~~g~-~~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI 331 (486)
.+..|..-.|-.--...+ +..+.||+.+-+| ++++..+++|.++++|.+|..-. +|. .|...+|++-+.|.||
T Consensus 193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV 266 (447)
T COG2907 193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV 266 (447)
T ss_pred HHHHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence 222333333321111122 3447889998888 55678899999999999998753 553 3444679998899977
Q ss_pred E--CCCCCCCCCCcccchhhhhhhhhhccCCCcceEEEEEEEecCCCCC
Q 011414 332 L--DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (486)
Q Consensus 332 ~--~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~ 378 (486)
+ .|+..+ .|+. + +-|++.+.+ .. ...+..+++.-++..+.|
T Consensus 267 iAth~dqAl-~mL~--e-~sp~e~qll-~a-~~Ys~n~aVlhtd~~lmP 309 (447)
T COG2907 267 IATHPDQAL-ALLD--E-PSPEERQLL-GA-LRYSANTAVLHTDASLMP 309 (447)
T ss_pred eecChHHHH-HhcC--C-CCHHHHHHH-Hh-hhhhhceeEEeecccccc
Confidence 3 577653 3321 2 223444433 11 122345667777776665
No 36
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.41 E-value=1.9e-11 Score=121.81 Aligned_cols=108 Identities=14% Similarity=0.065 Sum_probs=73.5
Q ss_pred eEeecCCcchHHHHHHHHHH----HcC--cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC-CCCC-CC
Q 011414 271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SL 342 (486)
Q Consensus 271 ~~~p~gG~~~L~qal~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~-~~~~-l~ 342 (486)
..+-.-|..++..-|.+... ++| ++++++++|..|..+. +++ +.|++.||+.+.||+||++-+. .+.+ ..
T Consensus 215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 33445566666666654222 233 5667779999998762 455 5789999999999999975331 1111 01
Q ss_pred cccchhhhhhhhhhccCCCcceEEEEEEEecCCCCCCC
Q 011414 343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380 (486)
Q Consensus 343 ~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~~~~~~ 380 (486)
.-+.|+||..+..-.++...|.+-|..+=+++|+-+..
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 13788999988776677778888898888999976654
No 37
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.5e-12 Score=129.33 Aligned_cols=249 Identities=18% Similarity=0.177 Sum_probs=139.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (486)
.|+|+|||++||+||..|+.+|++|+|+|+++++||+++|+..... .|..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg-~~~E----------------------------- 51 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDG-NHVE----------------------------- 51 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCC-Ceee-----------------------------
Confidence 5999999999999999999999999999999999999999875320 1110
Q ss_pred CCCceEeecCCCEEEe-cChHHHHHHHhcCcccccchhcccceeeec--cCCcee--ecCCC------HHHHhhcccCCh
Q 011414 104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL 172 (486)
Q Consensus 104 ~~~~~~idl~Gp~ll~-~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~--~~g~~~--~vp~s------~~~~f~~~~l~~ 172 (486)
. |=++++ +--.++.+|.+.+.+..+.+++....++-. ..|.+- ..|.. ..+.++.+.+..
T Consensus 52 --~-------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 52 --H-------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred --e-------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 0 223332 233677888888777666666544433211 112211 11111 012223333333
Q ss_pred HhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHH-HHH---HHHHhhccCCchhhhhhhchh
Q 011414 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIV---LYAIAMADYDQEVSEYVLKTR 248 (486)
Q Consensus 173 ~~k~~l~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~-~~l---~~~i~~~~~~~~~~~~~~s~~ 248 (486)
.+|.. |+-.+..... .......+..+.++.|||++++..+... +.+ .+++.+ ...+. .|+.
T Consensus 123 ~~~~~---~~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f--~~~e~----~sa~ 187 (485)
T COG3349 123 REKIR---FVLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTF--IDPEG----CSAR 187 (485)
T ss_pred HHHhH---Hhhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcc--cCccc----Ccch
Confidence 33322 2211111000 0011234667899999999877664432 222 222222 12222 3444
Q ss_pred hHHHHHHHHHHhhhcccCCCcceEeecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEec--CCCeEEEEEeCCCcEE
Q 011414 249 DGINRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDI 325 (486)
Q Consensus 249 ~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~-~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i 325 (486)
..+..+..++ +...+. +.....+++.. .+.+.+.+...+.|.+++++.+|+.|..+. .+.+++|+.+. +...
T Consensus 188 ~~lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~ 262 (485)
T COG3349 188 FFLTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQ 262 (485)
T ss_pred hHHHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-Ccce
Confidence 4443333332 222221 11335677765 456877888889999999999999998753 13446777765 6554
Q ss_pred EcCEEE
Q 011414 326 LSHKLV 331 (486)
Q Consensus 326 ~A~~VI 331 (486)
.+..++
T Consensus 263 e~~~~~ 268 (485)
T COG3349 263 EQQAAL 268 (485)
T ss_pred Eeeehh
Confidence 444444
No 38
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=121.12 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.6
Q ss_pred eEeec-CCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~-gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
-++|. .....|.+++.+.+++.|++++++++|.+|..+ + ....|.+.+|++++||.+|+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 36888 678999999999999999999999999999886 3 34678888998999999884
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.27 E-value=5.8e-11 Score=119.58 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=39.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+||+|||||++||++|..|++.|++|+|+|+++.+||.+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 799999999999999999999999999999999999987764
No 40
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.26 E-value=1.1e-11 Score=93.32 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=38.2
Q ss_pred EECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchh
Q 011414 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA 67 (486)
Q Consensus 27 IIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~ 67 (486)
|||+|++||++|.+|+++|++|+|+|+++++||+++++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999998754
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.24 E-value=7.1e-11 Score=118.85 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.4
Q ss_pred eEeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG---~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
+.++.+| ...+.++|.+.+...|++|+.+++|++|..+ ++++.+|++.+|+ ++||+||..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5678888 6899999999999999999999999999988 7788889998887 999999853
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.11 E-value=2.9e-10 Score=116.05 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=48.3
Q ss_pred eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
-.||.-. ..++.++|.+.+...|++++++++|++|..+ ++.++.|++++++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 4688774 6799999999999999999999999999987 6677889887888999999984
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.08 E-value=1.6e-09 Score=109.80 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=50.4
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE-EEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~A~~VI~~ 333 (486)
.+.|.+|. +++..+|.+.+...|+.++||++|+.|+... +| ++.+.+.+|++ ++|+.||..
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence 55677774 6899999999999999999999999999872 43 55677788887 999999953
No 44
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.06 E-value=3.2e-09 Score=108.93 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=47.3
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
+++|.+|. ..+.++|.+.++..|++++++++|.+|..+ ++. +.|++.+| +++||+||+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 55677774 688999999999999999999999999765 444 46777666 7999998853
No 45
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=1.1e-09 Score=104.06 Aligned_cols=100 Identities=20% Similarity=0.380 Sum_probs=70.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (486)
.+|.+|||+|++|++.|..|++.|++|+|+||++++||.|-+...+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~--------------------------------- 47 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ--------------------------------- 47 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence 48999999999999999999999999999999999999998864321
Q ss_pred cCCCCceEeecCCCEEEecChHH-HHHHHhcCcccccchhcccceeeeccCCceeecCCCHHH
Q 011414 102 SQHPRNFNLDVSGPRVLFCADHA-VDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA 163 (486)
Q Consensus 102 ~~~~~~~~idl~Gp~ll~~~~~l-~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~ 163 (486)
.+..+.--||+++...+.- .+.+ .++.||.......+-..+|..+.+|.+...
T Consensus 48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t 101 (374)
T COG0562 48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLNT 101 (374)
T ss_pred ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHHH
Confidence 0111222289999877632 2222 234555554433322238899999987643
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.02 E-value=1.7e-08 Score=105.73 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=45.8
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
++.|..|. ..+.++|.+.+...|++|+.+++|++|.. ++ .+.|++.+| +++|++||+.
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A 232 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA 232 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence 55677774 57899999999999999999999999863 22 256777666 6999998853
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.96 E-value=2.8e-08 Score=101.44 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=45.2
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
++.|.+|. ..+.++|.+.++..|++++.+++|++|..+ ++. +.|++++| +++|++||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 44566664 578899999899999999999999999765 444 45776555 799998774
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.91 E-value=3.4e-08 Score=103.69 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=46.4
Q ss_pred ecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CC--cEEEcCEEEE
Q 011414 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL 332 (486)
Q Consensus 274 p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~A~~VI~ 332 (486)
+.+|...+.+.|.+.++..|++++++++|++|..+ ++++++|+.. +| ..++|+.||+
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIl 186 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVL 186 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEE
Confidence 45555688999999999999999999999999876 6788888763 33 3589999885
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.91 E-value=2.7e-08 Score=106.21 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=47.4
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CC--cEEEcCEEEE
Q 011414 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (486)
Q Consensus 270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~A~~VI~ 332 (486)
++.+|. |. ..+..++++.+..+|++++.+++|++|..+ ++++++|++. +| .+|+|++||.
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 366774 53 478888889899999999999999999876 6777788752 33 3689999884
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.86 E-value=2.8e-08 Score=101.20 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=45.2
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
++.|.+|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++.+| +++||+||.
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~ 198 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV 198 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence 44566664 467788888888899999999999999876 443 46777666 799999884
No 51
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.86 E-value=9.8e-08 Score=98.68 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=47.9
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
++.+|..|. ..+.++|.+.+...|++|+++++|++|..+ ++++++|++. +.+++||+||+
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~ 251 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV 251 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence 355677664 478899999999999999999999999876 5666677765 45799999885
No 52
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.84 E-value=2.8e-07 Score=98.55 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
....++||||||+| +|++||...+++|.+|+||||.+.+||.+.
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 34568999999999 899999999999999999999999999766
No 53
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.84 E-value=1e-07 Score=98.48 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
+||||||||+.|+++|..|+++|++|+||||++.+|+-++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 6999999999999999999999999999999997765443
No 54
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.78 E-value=3.5e-07 Score=96.84 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 578999999999999999999999999999999999998643
No 55
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.77 E-value=9e-08 Score=104.79 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=47.5
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
+++|.+|. ..+.++|.+.+.. |++++.+++|++|..+ ++.+ .|++.+|..++|++||.
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence 66788875 5888999998888 9999999999999876 5554 47777787788999884
No 56
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.76 E-value=5.4e-09 Score=94.97 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.++||+|||+|.+||+||++|+++|+||+++|++..+||..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 4689999999999999999999999999999999999987653
No 57
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.75 E-value=5.7e-09 Score=94.22 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.+-||||||+|.+||+||++||++|.||+++|++.++||-.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 457999999999999999999999999999999999998654
No 58
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.74 E-value=3.9e-07 Score=93.99 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=46.4
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
++.+.+|. ..+.++|++.+...|++++.+++|++|.... ++++++|++.+| ++.|++||+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCc-eEECCEEEEC
Confidence 44455554 3677888899999999999999999997541 466677887777 6999987753
No 59
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.73 E-value=4.1e-07 Score=87.29 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=50.4
Q ss_pred eecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC-CCCC
Q 011414 273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT 337 (486)
Q Consensus 273 ~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~-p~~~ 337 (486)
-+.||. ..-..+|...++.+|+.++-+..|..+....+++..++|++++|..+.|+++|++ ..++
T Consensus 144 n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 144 NESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred cccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 345664 2345777888899999999999999998654567778999999999999998853 4443
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.72 E-value=2.6e-07 Score=96.81 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=47.0
Q ss_pred eEeecCC-c---chHHHHHHHHHHH----cC--cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG-~---~~L~qal~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.+.|..| . +.+.++|.+.++. .| ++++++++|+.|..+ ++..+.|++.+| +++|+.||+.
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 5567553 3 6899999999988 78 678999999999875 455677887666 6999998853
No 61
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.69 E-value=1.8e-07 Score=96.95 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=42.8
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 17 ~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-.+..
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs 54 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS 54 (532)
T ss_pred cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence 445688999999999999999999999999999999999988866543
No 62
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.63 E-value=6.1e-08 Score=90.27 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=43.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccchhh
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~ 68 (486)
.+++|||+|++||+||..|+.+|++|+|+||..-+|||.+|-..++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 3699999999999999999999999999999999999999987664
No 63
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.59 E-value=4.6e-08 Score=100.44 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+|||||||||++|++||+.|+++|++|+|+|+++.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5699999999999999999999999999999999999997766
No 64
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.59 E-value=2.6e-06 Score=86.88 Aligned_cols=250 Identities=11% Similarity=0.145 Sum_probs=124.9
Q ss_pred ccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 011414 23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (486)
.++-|||+|+++|+||++|-|. |.+|.+||+.+..||......... .+|+..+|-... ..| +..+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~-~GYv~RgGR~~~----~~~---eclwd-- 72 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE-NGYVIRGGRMME----FHY---ECLWD-- 72 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC-CCeeecCCcccc----chh---HHHHH--
Confidence 5788999999999999999776 679999999999999987654322 234443331110 000 00000
Q ss_pred ccccCCCCceEeecCCCEEEecChHHHHHHHhcCcccccchhcccceeeeccCCceeecCCCHHHHhhcccCChHhHHHH
Q 011414 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (486)
Q Consensus 99 ~~~~~~~~~~~idl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~l~~~~k~~l 178 (486)
+ +... |++--..-...+.+...+-.+ . ......+...+|+..... ..-.|+.+++..|
T Consensus 73 --L--------ls~I-PSle~p~~SVlDe~~~~n~~~-p---~~s~~Rli~~~G~~~~~~-------~~~~Ls~k~r~eL 130 (500)
T PF06100_consen 73 --L--------LSSI-PSLEDPGKSVLDEIYWFNKED-P---NYSKARLIDKRGQIVDTD-------SKFGLSEKDRMEL 130 (500)
T ss_pred --H--------HHhC-CCCCCCCCcHHHHHHHhccCC-C---CCcceeeeccCCcccccc-------CcCCCCHHHHHHH
Confidence 0 0001 221100001122221111110 0 000001111123221111 1123556666667
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChHHHHHHH-HH--HhhccCCchhhhhhhchhhHHHHHH
Q 011414 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YA--IAMADYDQEVSEYVLKTRDGINRLA 255 (486)
Q Consensus 179 ~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~l~-~~--i~~~~~~~~~~~~~~s~~~~l~~~~ 255 (486)
++++-.-. ....+..+.||+..-.+.- +|.. ++ .++.++ -|+.+.-..+.
T Consensus 131 ~kL~l~~E----------------~~L~~~~I~d~F~~~FF~S---nFW~~W~T~FAFqpW--------hSa~E~rRyl~ 183 (500)
T PF06100_consen 131 IKLLLTPE----------------EDLGDKRIEDWFSESFFES---NFWYMWSTMFAFQPW--------HSAVEFRRYLH 183 (500)
T ss_pred HHHhcCCH----------------HHhCcccHHHhcchhhhcC---chhHhHHHhhccCcc--------hhHHHHHHHHH
Confidence 77553111 1233455666655311111 2222 11 222222 25555555566
Q ss_pred HHHHhhhcccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--eEEEEEe-CCCcE--E---E
Q 011414 256 LYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-ASGQD--I---L 326 (486)
Q Consensus 256 ~~~~s~g~~g~~~g~~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~-~~G~~--i---~ 326 (486)
+|+.-+.++..- .++.+.+|- .-.|+.-|.+-++..|+++++|+.|+.|..+.+++ .+..+.+ .+|+. | .
T Consensus 184 Rf~h~~~~l~~l-~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~ 262 (500)
T PF06100_consen 184 RFIHEIPGLNDL-SGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGP 262 (500)
T ss_pred HHHHhcCCCCCc-cccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCC
Confidence 666555443321 225566665 45899999999999999999999999998863222 2334443 45542 3 2
Q ss_pred cCEEEE
Q 011414 327 SHKLVL 332 (486)
Q Consensus 327 A~~VI~ 332 (486)
-|.|++
T Consensus 263 ~DlV~v 268 (500)
T PF06100_consen 263 DDLVFV 268 (500)
T ss_pred CCEEEE
Confidence 566764
No 65
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.54 E-value=8e-08 Score=92.09 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||+|||+|.+||+||++|+++|++|+++||+..+||..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46899999999999999999999999999999999998763
No 66
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.52 E-value=9.7e-08 Score=99.00 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.+|||||||||++|++||+.|+++|++|+|+||++.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.52 E-value=9.8e-08 Score=91.76 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||+|||+|++||+||.+|+++|++|+++|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 46899999999999999999999999999999999998854
No 68
>PRK10015 oxidoreductase; Provisional
Probab=98.49 E-value=1.2e-07 Score=98.16 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+.+|||||||||++|++||+.|+++|++|+++||++.+|-.
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 35699999999999999999999999999999999887643
No 69
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.44 E-value=1.9e-07 Score=98.01 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.|..|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 4567999999999999999999999999999999999999987543
No 70
>PRK07121 hypothetical protein; Validated
Probab=98.41 E-value=3.4e-07 Score=96.83 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.++||||||+|.+||+||+.++++|.+|+||||+...||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 71
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.40 E-value=2.4e-07 Score=97.19 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
|++|||||||+|.+|+.||.++++.|++|+++|+++.+||.|..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 35699999999999999999999999999999998899998744
No 72
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=3.3e-07 Score=94.73 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=39.8
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 13 ~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
|..|.-++..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 445665667899999999999999999999999999999998764
No 73
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.38 E-value=3.5e-06 Score=86.59 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=45.6
Q ss_pred EeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 272 ~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.||... ..++.++|.+.++..|.++++++.|++|..+ ++ .+.|++ +++++.||.||+
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl 154 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL 154 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence 466544 5789999999999999999999999999664 33 356776 677899999985
No 74
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=3.1e-07 Score=95.77 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG~~~s 63 (486)
|++|||||||||.+|+.||.+|++.|++|+++|+.+ .+||.|..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 357999999999999999999999999999999987 48998754
No 75
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.37 E-value=4e-07 Score=94.73 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.-+++....|||||||||++|++||..|+++|++|+++|++.
T Consensus 31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 455667778999999999999999999999999999999975
No 76
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.36 E-value=4.5e-07 Score=96.06 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
++.+|||||||||+.|+.+|..|+++|++|+++|+++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 34679999999999999999999999999999999988776553
No 77
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.35 E-value=3.3e-07 Score=92.01 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
++||||||||++||++|..|+|+|++|+|+|+++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998654
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.35 E-value=4.6e-07 Score=94.50 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+...+|+|||||.+||+||.+|++.|.+|+|+|+++.+||.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34579999999999999999999999999999999999999865
No 79
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.35 E-value=3.6e-07 Score=94.75 Aligned_cols=41 Identities=29% Similarity=0.453 Sum_probs=34.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
||||||||.+|++||+.+||+|.+|+++|+++.+||...+-
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~ 41 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSG 41 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceEC
Confidence 89999999999999999999999999999999999987643
No 80
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.34 E-value=5.1e-06 Score=86.37 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.6
Q ss_pred EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC-CcEEEcCEEEE
Q 011414 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (486)
Q Consensus 272 ~~p~gG~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~A~~VI~ 332 (486)
.++.++...+.++|.+.++.+|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 35666677899999999999999999999999998752146778887543 45799999885
No 81
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4.8e-07 Score=93.91 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCccccchhh
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~s~~~~~ 68 (486)
.++.+||+|||||.+|+++|++|.++|.. +++|||++.+||.|+....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 45789999999999999999999999999 999999999999988865544
No 82
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=4.3e-07 Score=94.58 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=39.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC-CCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~~ 62 (486)
|.+|||||||||.+|+.||..|++.|++|+++|+++. +||.|.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 3479999999999999999999999999999999875 799764
No 83
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=5.4e-07 Score=92.27 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
++|..+||||||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4567799999999999999999999999999999998765
No 84
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.30 E-value=6.5e-07 Score=94.03 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 35799999999999999999999999999999999999997643
No 85
>PRK06370 mercuric reductase; Validated
Probab=98.30 E-value=6.6e-07 Score=93.89 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=39.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+|.+|||||||+|.+|+.||.+|++.|++|+++|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 567899999999999999999999999999999986 67777654
No 86
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=6.2e-07 Score=94.06 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
|.+|||||||+|.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 4569999999999999999999999999999999 789998754
No 87
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.30 E-value=6.7e-07 Score=87.53 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
|||+|||||++||++|+.|++.|.+|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999988765
No 88
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.30 E-value=7.5e-07 Score=94.34 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
++.+|||||||||++|+.+|+.|+++|.+|++||+++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35679999999999999999999999999999999987665443
No 89
>PRK06116 glutathione reductase; Validated
Probab=98.29 E-value=6.1e-07 Score=93.79 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 4699999999999999999999999999999996 89997743
No 90
>PRK08013 oxidoreductase; Provisional
Probab=98.27 E-value=7.8e-07 Score=91.52 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
|.++||+|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998764
No 91
>PTZ00058 glutathione reductase; Provisional
Probab=98.27 E-value=1e-06 Score=93.91 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 10 ~~~~~-~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
-|+|. ++.-...+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-..
T Consensus 35 ~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~ 89 (561)
T PTZ00058 35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNV 89 (561)
T ss_pred cCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccccc
Confidence 45663 6655556799999999999999999999999999999996 799987653
No 92
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.26 E-value=8.2e-07 Score=93.17 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=38.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+|||||||+|.+|+.||..|++.|++|+++|+ +.+||.|...
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~ 42 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNV 42 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeec
Confidence 48999999999999999999999999999999 8999987643
No 93
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.25 E-value=4.2e-05 Score=77.88 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC--cEEEcCEEEE-CCCC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF 336 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~A~~VI~-~p~~ 336 (486)
..|.++|.+.++.+||+++.+..|.++..+ ++++++|.+.++ ..++||+||+ ...+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 478899999999999999999999999887 677778877676 4799999885 3444
No 94
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.25 E-value=1.9e-05 Score=82.15 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=49.3
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI 331 (486)
.+.|.-|. ..++|++++.+..+|+.|.-+++|++|... +++..+|.+.-|. |+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence 44577774 689999999999999999999999999987 5566799987774 8999988
No 95
>PRK09126 hypothetical protein; Provisional
Probab=98.24 E-value=9.9e-07 Score=90.44 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=34.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 689999999999999999999999999999999875
No 96
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.23 E-value=9.5e-07 Score=92.21 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+|||||||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998764
No 97
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=1.1e-06 Score=92.19 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=39.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
|.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 35699999999999999999999999999999985 788877644
No 98
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.23 E-value=1.1e-06 Score=89.99 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
|.++||+|||||++||++|+.|++.|++|+|+|+.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 345899999999999999999999999999999874
No 99
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.23 E-value=1.1e-06 Score=92.99 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~ 60 (486)
+.+|||||||||++|+.||..+||.|++|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45799999999999999999999999999999998 477763
No 100
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.2e-06 Score=92.06 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.+|||||||||.+|+.||..|++.|++|+++|++. +||.|...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~ 45 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNR 45 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeec
Confidence 46999999999999999999999999999999987 99977543
No 101
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.22 E-value=1.3e-06 Score=89.73 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p 334 (486)
..+.++|.+.++..|.+++.+++|+++..+ ++. +.|++++|++++||.|| ++.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG 166 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADG 166 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 467778888888889999999999999875 444 45777889999999988 443
No 102
>PLN02463 lycopene beta cyclase
Probab=98.22 E-value=1.5e-06 Score=90.08 Aligned_cols=47 Identities=30% Similarity=0.626 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 9 ~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
....|.|.+-....|||||||||++||++|+.|+++|++|+++|+++
T Consensus 15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 44556677766778999999999999999999999999999999975
No 103
>PRK07045 putative monooxygenase; Reviewed
Probab=98.22 E-value=1.2e-06 Score=89.72 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=35.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
++..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 2 KNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 346789999999999999999999999999999999754
No 104
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.22 E-value=9.8e-07 Score=91.30 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (486)
Q Consensus 277 G~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~ 332 (486)
+...+.+.|.+.++++|++|+++++|+++.++ +++++||... +|+ +|+|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 34689999999999999999999999999998 7899999875 455 478999885
No 105
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.22 E-value=1.2e-06 Score=91.54 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 599999999999999999999999999999995 68997753
No 106
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.21 E-value=1.3e-06 Score=91.81 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 4799999999999999999999999999999996 889988643
No 107
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.21 E-value=1.2e-06 Score=90.31 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
+|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 356789999999999999999999999999999996
No 108
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.20 E-value=9.6e-07 Score=81.68 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.6
Q ss_pred EEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCCccc
Q 011414 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS 63 (486)
Q Consensus 26 iIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~s 63 (486)
+|||||++||++|+.|.+.|.+ |++||+++.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999885
No 109
>PRK06184 hypothetical protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=91.81 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~ 64 (486)
|+++||+|||||++||++|+.|++.|.+|+|+||++.+ .++...+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l 47 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGI 47 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceee
Confidence 46799999999999999999999999999999999866 4444444
No 110
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.19 E-value=1.8e-06 Score=82.69 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=37.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC--CCCCc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF 61 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~--~GG~~ 61 (486)
++.++||||||+|++||.||+.||.+|++|+++|+... +||.+
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 45689999999999999999999999999999998754 66653
No 111
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.19 E-value=1.4e-06 Score=89.22 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..++|||||||||++||++|+.|+++|++|+|+|++..
T Consensus 2 ~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 2 TNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred CcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 34679999999999999999999999999999999753
No 112
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.18 E-value=1.9e-06 Score=88.33 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
|||||||||++|++||..|++.|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 113
>PLN02661 Putative thiazole synthesis
Probab=98.18 E-value=1.5e-06 Score=86.01 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS 59 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG 59 (486)
++||+|||+|++|++||+.|+++ |++|+++|++..+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 58999999999999999999986 999999999999987
No 114
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.18 E-value=1.3e-06 Score=86.06 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCc
Q 011414 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (486)
||+||||+|.+|+++|.+|+++| ++|+|||+..++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 6999999988776555
No 115
>PRK07236 hypothetical protein; Provisional
Probab=98.17 E-value=1.9e-06 Score=88.25 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|...||||||||++||++|..|++.|++|+|+|+++.
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 35668999999999999999999999999999999864
No 116
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.16 E-value=1.9e-06 Score=84.73 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
|||||||||++||.||..|++.|++|+++|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886543
No 117
>PRK13748 putative mercuric reductase; Provisional
Probab=98.16 E-value=1.7e-06 Score=93.07 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 5799999999999999999999999999999997 89998764
No 118
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.16 E-value=2e-06 Score=88.40 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
+||||||||++|++||..|+++|++|+++|++...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 6999999999999999999999999999999876543
No 119
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.16 E-value=1.9e-06 Score=91.48 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.++||||||+| +||+||+.++++|.+|+||||.+.+||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999999998653
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.16 E-value=2e-06 Score=92.09 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--CCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~--~~GG~~~ 62 (486)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 121
>PRK14694 putative mercuric reductase; Provisional
Probab=98.16 E-value=2.1e-06 Score=90.27 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=39.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+...|||||||||.+|++||..|++.|++|+++|++ .+||-|..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 346799999999999999999999999999999996 79998764
No 122
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=2.1e-06 Score=90.41 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc------CCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~------~~~~GG~~~s~ 64 (486)
.+||+||||+|.+|++||.+|++.|++|+++|+ +..+||.|...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 469999999999999999999999999999998 47889988643
No 123
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.15 E-value=2.7e-06 Score=95.22 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+.+||+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 35689999999999999999999999999999999999999754
No 124
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.15 E-value=2.1e-06 Score=89.51 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC--CCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~A~~VI~ 332 (486)
.++.+.|.+.++..|++++++++|++|..++ ++++++|++. +|+ .+.|+.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence 4788999999999999999999999998862 5678787653 343 368899884
No 125
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.15 E-value=2.1e-06 Score=88.10 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
...||+|||||++||++|..|+++|++|+|+||++.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 4579999999999999999999999999999998754
No 126
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.14 E-value=2.5e-06 Score=91.79 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=40.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
+..++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 44579999999999999999999999999999999999998764
No 127
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.13 E-value=2.5e-06 Score=87.14 Aligned_cols=59 Identities=32% Similarity=0.363 Sum_probs=46.5
Q ss_pred eEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
+.+|..|. ..+.+++++.+..+| ..+..+++|..+..+ . +.++|++.+|. +.|++||+.
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 55677775 578999999999999 455669999998764 3 66789887776 999999853
No 128
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.13 E-value=2.1e-06 Score=87.67 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (486)
Q Consensus 279 ~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p 334 (486)
..+.+.|.+.+...| ++++.+++|++|..+ ++. +.|++++|+++.||.|| ++.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence 467777888787888 999999999999875 444 46778899999999988 443
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.13 E-value=2.4e-06 Score=91.52 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
..|||||||||.+||+||.+|++.|++|+++|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 4599999999999999999999999999999995 78987653
No 130
>PRK06185 hypothetical protein; Provisional
Probab=98.12 E-value=2.5e-06 Score=87.97 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4679999999999999999999999999999999863
No 131
>PRK06834 hypothetical protein; Provisional
Probab=98.12 E-value=2.7e-06 Score=89.65 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC---CCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~---~GG~~~s~ 64 (486)
|+++||||||||++||++|+.|++.|.+|+|+|+++. .|.+...+
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l 48 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGL 48 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeE
Confidence 5679999999999999999999999999999999875 34444443
No 132
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=2.5e-06 Score=87.73 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.|.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 445799999999999999999999999999999999999999865
No 133
>PLN02985 squalene monooxygenase
Probab=98.12 E-value=3.3e-06 Score=89.43 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.++.....+||||||||++||++|+.|+++|++|+|+||...
T Consensus 36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 455566789999999999999999999999999999999754
No 134
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.12 E-value=2.6e-06 Score=87.16 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
.+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5799999999999999999999999999999998753
No 135
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.11 E-value=2.3e-06 Score=85.77 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=41.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (486)
.-+++|||||++|++||..|++.|++|.++||++.+||+...++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 34799999999999999999999999999999999999988764
No 136
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.11 E-value=2.6e-06 Score=87.22 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
||||||||++|+++|+.|++.|++|+|+|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999877763
No 137
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.10 E-value=3.2e-06 Score=85.84 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
+||+|||+|+.|+++|+.|+++|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 138
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.10 E-value=2.9e-06 Score=82.84 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=33.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
....+||||||||.+|++.|+.|+|.|+||+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 456799999999999999999999999999999995
No 139
>PRK07190 hypothetical protein; Provisional
Probab=98.10 E-value=3.1e-06 Score=89.12 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=35.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
+..+||||||||++||++|+.|+++|.+|+|+||++.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 45689999999999999999999999999999999875
No 140
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.09 E-value=2.5e-06 Score=87.86 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p 334 (486)
.+-++|.+.++..|.+++.+++|.+|..+ ++. +.|++++|++++||.|| ++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 56677777777789999999999999765 333 46778899999999998 443
No 141
>PRK12831 putative oxidoreductase; Provisional
Probab=98.09 E-value=3.8e-06 Score=87.94 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=40.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..+..||+|||+|.+||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 45678999999999999999999999999999999999999874
No 142
>PLN02697 lycopene epsilon cyclase
Probab=98.09 E-value=4.5e-06 Score=88.13 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
....+||||||||++||++|..|++.|++|+++|+....
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 445799999999999999999999999999999986443
No 143
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.09 E-value=2.9e-06 Score=87.05 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCcEEEEccC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN 54 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~---G~~VlvlE~~ 54 (486)
|..+||+|||||++||++|+.|+++ |.+|+|+|++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4678999999999999999999998 9999999996
No 144
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.3e-06 Score=82.90 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (486)
+..|||||||+|.+||+||.+++|+|.++.+++....+||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 4579999999999999999999999999666666677887665543
No 145
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.08 E-value=3.2e-06 Score=88.72 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
|||||||+|.+|++||.+|++.|++|+++|+.. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999976 8887653
No 146
>PRK14727 putative mercuric reductase; Provisional
Probab=98.08 E-value=3.1e-06 Score=89.17 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=41.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+..|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|...
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~ 58 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV 58 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence 346899999999999999999999999999999999999988653
No 147
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.07 E-value=3.2e-06 Score=86.72 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999874
No 148
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.07 E-value=3.6e-06 Score=91.21 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
...|||||||||+.|+.+|+.|+++|++|++||+++.-+|-
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 35599999999999999999999999999999999876663
No 149
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.07 E-value=3.8e-06 Score=89.93 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||||||+|.+|++||..|+++|++|+|||++..+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 47899999999999999999999999999999999999965
No 150
>PTZ00367 squalene epoxidase; Provisional
Probab=98.06 E-value=3.9e-06 Score=89.46 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=35.6
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
|.....++||||||||++|+++|..|+++|++|+|+|++.
T Consensus 27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3344467999999999999999999999999999999975
No 151
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.06 E-value=4.4e-06 Score=90.08 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=40.2
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
-+|+..++||||||+|.+||.||+.++++|.+|+||||+...||.+
T Consensus 6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 3455667999999999999999999999999999999988777643
No 152
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.05 E-value=4.4e-06 Score=86.28 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=42.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 467999999999999999999999999999999999999988765
No 153
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.05 E-value=5.2e-05 Score=79.11 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-EC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~ 333 (486)
..+-+-|.+.+...|++++.++ |..+..+. +|.+++|++.+|++++||.|| ++
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence 5677888888999999998875 78887774 788889999999999999999 54
No 154
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.04 E-value=3.7e-06 Score=85.86 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (486)
Q Consensus 279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p 334 (486)
..+.+.|.+.+.. .|++++++++|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 4677888887777 49999999999999865 333 46777889899999988 444
No 155
>PRK06847 hypothetical protein; Provisional
Probab=98.04 E-value=5e-06 Score=84.67 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.++.+.|.+.+...|.++++++.|++|..+ ++. +.|.+.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 467788888888889999999999999765 443 567778999999999884
No 156
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=4.4e-06 Score=89.89 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 46899999999999999999999999999999999998853
No 157
>PRK06126 hypothetical protein; Provisional
Probab=98.03 E-value=4.8e-06 Score=89.27 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.+.++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 44678999999999999999999999999999999874
No 158
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.03 E-value=4.4e-06 Score=85.20 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+||+|||||++|+++|..|++.|++|+|+|+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 159
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.02 E-value=4.5e-06 Score=88.26 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
++.+.+.+..+..|.++++++.|.+|... ++. ..|++.+|+++.+|.||+
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence 56778888888999999999999998754 333 457777899999999885
No 160
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.02 E-value=6e-06 Score=88.52 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..++||||||+|.+|++||+.++++|.+|+||||+..+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 3578999999999999999999999999999999999988543
No 161
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.02 E-value=6.8e-06 Score=91.72 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+..+|+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998764
No 162
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.02 E-value=4.5e-06 Score=85.47 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEeC-CCcEEEcCEEE-ECC
Q 011414 278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (486)
Q Consensus 278 ~~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~A~~VI-~~p 334 (486)
...|-++|.+.+...+ .+++.++.|+.+..+ ++.+. |+++ +|++++||.|| ++.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence 4677788888887777 699999999999887 44444 7777 99999999999 554
No 163
>PRK12839 hypothetical protein; Provisional
Probab=98.02 E-value=6e-06 Score=88.56 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+..++||||||+|.+|++||+.|+++|.+|+++||+..+||.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 445799999999999999999999999999999999999997653
No 164
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=5.5e-06 Score=89.27 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
..+||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999987764
No 165
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=5.8e-06 Score=89.68 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
+..++||||||+|++||.||..++++|.+|+|+||+...||
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 34568999999999999999999999999999999987665
No 166
>PRK06753 hypothetical protein; Provisional
Probab=98.00 E-value=5.3e-06 Score=84.43 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 38999999999999999999999999999999865
No 167
>PLN02507 glutathione reductase
Probab=98.00 E-value=6e-06 Score=87.28 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.++.+.+.+..+..|.++++++.|++|..+ ++. +.|.+.+|+++.||.||+.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA 295 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence 467777777888899999999999999765 333 3566778889999999853
No 168
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=6.4e-06 Score=88.39 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~ 332 (486)
..|.++|.+.+...|.++++++.++++..+ +|+++||... +|+ .++|+.||+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL 192 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL 192 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence 368888988888889999999999999987 7899998753 333 578999885
No 169
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.00 E-value=7.7e-06 Score=89.15 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=42.9
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..++..++..+|+|||+|.+||++|..|++.|++|+|+|+++.+||.++
T Consensus 302 ~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 302 DVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3334445678999999999999999999999999999999999999865
No 170
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=6.8e-06 Score=88.52 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
|...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3446789999999999999999999999999999999887774
No 171
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.99 E-value=7.6e-06 Score=87.41 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
..++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999987774
No 172
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.99 E-value=5.9e-06 Score=93.07 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
+..+|+|||+|.+||+||..|++.|++|+|+|+++++||..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 467999999999999999999999999999999999999865
No 173
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.99 E-value=5.7e-06 Score=84.90 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
++||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999874
No 174
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.98 E-value=8e-06 Score=89.33 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999999865
No 175
>PRK08244 hypothetical protein; Provisional
Probab=97.98 E-value=6.2e-06 Score=87.30 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=36.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~ 64 (486)
++||+|||||++||++|+.|++.|.+|+|+||++.. .|+..++
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l 46 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTL 46 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEe
Confidence 389999999999999999999999999999998754 4444443
No 176
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.98 E-value=5.7e-06 Score=86.18 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~ 56 (486)
|||+|||||++||++|+.|++ .|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 177
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.98 E-value=7.5e-06 Score=94.77 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 3468999999999999999999999999999999999999753
No 178
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.97 E-value=1e-05 Score=86.79 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~s~ 64 (486)
.++||+|||||++||++|+.|++.|.+|+|+||++.+ +++...+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l 67 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICF 67 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEE
Confidence 5689999999999999999999999999999999865 4444444
No 179
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.97 E-value=6.6e-06 Score=86.55 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (486)
.+.++||||||||+.|+++|+.|++. |++|+||||++.+|+..+
T Consensus 2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 34678999999999999999999984 899999999988776554
No 180
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.97 E-value=8e-06 Score=87.40 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
+.++||+|||+|++||++|+.|++.|++|+|+|+++.++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 4668999999999999999999999999999999986643
No 181
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=7.7e-06 Score=88.31 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
..|.++|.+.+...|.+++.++.|.++..+ ++|+++||.. .+|+ .+.|+.||+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 206 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMD-DGGVCRGVVAWNLDDGTLHRFRAHMVVL 206 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 378899988888899999999999999876 2478889864 3565 578999885
No 182
>PRK11445 putative oxidoreductase; Provisional
Probab=97.97 E-value=6.7e-06 Score=83.08 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.|||+|||||++||++|..|+++ ++|+++|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999754
No 183
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.97 E-value=6.2e-06 Score=84.83 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
..+.+.|.+.+...|.+++.+++|++|..+ ++. +.|++++|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 467788888888889999999999999765 443 467778999999999984
No 184
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.97 E-value=1.1e-05 Score=84.39 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.++.+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 44678999999999999999999999999999999999999754
No 185
>PRK07538 hypothetical protein; Provisional
Probab=97.96 E-value=7e-06 Score=84.84 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998654
No 186
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.96 E-value=8.3e-06 Score=88.29 Aligned_cols=53 Identities=17% Similarity=0.371 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
..|.++|.+.+...|.+++.++.|.++..+ ++|+++||.. .+|+ .++|+.||+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 223 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMD-EDGECRGVIAMSMEDGSIHRFRAHYTVI 223 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEEC-CCCEEEEEEEEECCCCeEEEEECCcEEE
Confidence 478899999888999999999999999873 2788888864 3564 478999884
No 187
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.96 E-value=6.4e-06 Score=86.53 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.9
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCC--cEEEcCEEEEC
Q 011414 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD 333 (486)
Q Consensus 270 ~~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~A~~VI~~ 333 (486)
+.+.|.+|. ..+.++|.+.++..|++++++++|++|..+. ++. +.|++ .+| .+++|++||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 355677774 6899999999999999999999999998752 333 33432 334 36899998853
No 188
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.94 E-value=9.5e-06 Score=92.53 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
..+||+|||||.+||+||.+|++.|++|+++|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999997754
No 189
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.94 E-value=8.7e-06 Score=82.75 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=34.7
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH 60 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~ 60 (486)
||||||||++||++|.+|+++ |++|+++|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999988764
No 190
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.94 E-value=8.8e-06 Score=86.97 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=37.2
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+...++||||||+|++||+||+.++ .|.+|+|+||.+..||.
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 3456789999999999999999986 59999999999988874
No 191
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.94 E-value=8.7e-06 Score=85.66 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.++.+.+.+..+..|.++++++.|++|..+ ++....|++.+|+++.+|.||+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~ 282 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM 282 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence 577888888899999999999999999764 2333456677888999999885
No 192
>PRK02106 choline dehydrogenase; Validated
Probab=97.93 E-value=9.2e-06 Score=87.30 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~ 56 (486)
+..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 3456999999999999999999999 8999999999854
No 193
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.93 E-value=1.1e-05 Score=86.83 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=40.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
...++||||||+|.+|++||..++++|++|+||||++.+||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 345799999999999999999999999999999999999997653
No 194
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.93 E-value=1e-05 Score=91.90 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=40.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.+..+|+|||+|.+||+||..|++.|++|+|+|+.+.+||..+.
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 35679999999999999999999999999999999999997653
No 195
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.93 E-value=9.1e-06 Score=84.38 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=43.3
Q ss_pred eecCCc-chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEE-eCCCc--EEEcCEEEE
Q 011414 273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL 332 (486)
Q Consensus 273 ~p~gG~-~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~A~~VI~ 332 (486)
++.... .++.++|.+.++. .|.+|+++++|.+|..+ +++++||. ..+|+ .++|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 444444 3688888877765 59999999999999876 67888865 33554 589999885
No 196
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.93 E-value=1.1e-05 Score=80.17 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+-+|||||||++||++|+.|+|.|++|+|+|++.-+=|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 358999999999999999999999999999998765333
No 197
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.93 E-value=9.5e-06 Score=87.96 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||||||+|++||.||..++++|.+|+|+||....||.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 46899999999999999999999999999999998877743
No 198
>PRK07588 hypothetical protein; Provisional
Probab=97.91 E-value=9.7e-06 Score=83.12 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 199
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.1e-05 Score=87.76 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.++||||||+|.+||+||+.++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 4689999999999999999999999999999998888644
No 200
>PLN02546 glutathione reductase
Probab=97.91 E-value=1.1e-05 Score=86.11 Aligned_cols=45 Identities=27% Similarity=0.148 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC---------CCCCCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~---------~~~GG~~~s~ 64 (486)
..+|||||||+|.+|..||..+++.|++|+++|++ ..+||-|-..
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 34699999999999999999999999999999972 5689977654
No 201
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.90 E-value=1.2e-05 Score=85.41 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
...|||+|||||.+|++||.+|++.|++|+++|++ +||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 45699999999999999999999999999999874 999875
No 202
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.89 E-value=1.2e-05 Score=81.95 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~L--a~~G~~VlvlE~~~~~ 57 (486)
||||||||++||++|.+| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8889999999999887
No 203
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.89 E-value=1e-05 Score=87.04 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=45.4
Q ss_pred eecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 273 ~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
++..++ ..|.++|.+.+...|.+++.++.|.++..+ +|+++||.. .+|+ .++|+.||+
T Consensus 128 ~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 128 YAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred ecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 443333 478899999888899999999999999876 788888753 4564 579999985
No 204
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.89 E-value=1.2e-05 Score=87.59 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
..|..+|.+.+...|.+|+.++.|.+|+.+ +|+++||.. .+|+ .+.|+.||+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 478888888888899999999999999987 788888765 3565 368999884
No 205
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.89 E-value=1.5e-05 Score=83.80 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
....||+|||+|.+||+||..|++.|++|+++|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999754
No 206
>PRK05868 hypothetical protein; Validated
Probab=97.87 E-value=1.5e-05 Score=81.26 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998764
No 207
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=1.4e-05 Score=86.11 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=38.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCCc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~ 61 (486)
+..++||||||+|.+||+||..++++| .+|+|+||....||.+
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 335689999999999999999999998 8999999999877743
No 208
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.87 E-value=1.2e-05 Score=85.21 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
.|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 6999999999999999999999999999999999999974
No 209
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.86 E-value=1.4e-05 Score=84.27 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
|||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999866
No 210
>PLN02815 L-aspartate oxidase
Probab=97.86 E-value=1.4e-05 Score=85.87 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=36.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.++||||||+|++||.||+.+++.| +|+||||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4689999999999999999999999 89999999998884
No 211
>PRK10262 thioredoxin reductase; Provisional
Probab=97.85 E-value=1.5e-05 Score=79.42 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
..+||+|||||.+||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 5689999999999999999999999999999965 67887644
No 212
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.85 E-value=1.9e-05 Score=87.78 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.+..||+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999999999865
No 213
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.84 E-value=1.6e-05 Score=80.85 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
.||+|||||++|+.||..|++.|++|+++|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 4999999999999999999999999999999876643
No 214
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.84 E-value=1.6e-05 Score=85.67 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
.|.++|.+.+...|.+++.++.|++|..+ +|+++||.. .+|+ .++|+.||+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 68888888888889999999999999887 788888764 3565 579999884
No 215
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.84 E-value=1.7e-05 Score=85.84 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~s~ 64 (486)
.+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~ 159 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNV 159 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEe
Confidence 3799999999999999999999999999999984 5799977543
No 216
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.82 E-value=2.7e-05 Score=83.94 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.++||||||+|.+|++||..++++|++|+|||+++..||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999999765
No 217
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.82 E-value=1.9e-05 Score=82.76 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (486)
..+||||||||+.|+++|+.|++. |++|+||||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 567999999999999999999999 999999999778776554
No 218
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.82 E-value=2.5e-05 Score=81.89 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.+..+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999765
No 219
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.82 E-value=1.8e-05 Score=85.93 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=37.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC--CCCcccc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSL 64 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~--GG~~~s~ 64 (486)
++++||+|||||++||++|+.|++ .|.+|+|+|+++.. .|++..+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl 77 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGI 77 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEE
Confidence 467999999999999999999999 59999999998643 4555433
No 220
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.82 E-value=1.8e-05 Score=81.44 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998654
No 221
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.81 E-value=2.1e-05 Score=83.62 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
...|||+|||||.+|++||.+|++.|++|+++|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4569999999999999999999999999999985 6899765
No 222
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.81 E-value=1.8e-05 Score=80.82 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
||+|||||++|+.||..|++.|++|+++|+++..|-..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~ 39 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA 39 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence 89999999999999999999999999999988876533
No 223
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.80 E-value=2.5e-05 Score=81.60 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=39.6
Q ss_pred CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s 63 (486)
...+|+|||+|.+|+.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 45689999999999999999987 79999999999999998875
No 224
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.80 E-value=2.1e-05 Score=83.02 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEEeCC-C--cEEEcCEEEE
Q 011414 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~A~~VI~ 332 (486)
..|.++|.+.+.. .|.+++.++.|++|..+ ++++++|...+ + ..++|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788999888877 68999999999999876 67788876543 3 3689999884
No 225
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.80 E-value=2.6e-05 Score=85.14 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
...+|+|||+|.+||+||..|++.|++|+++|+++++||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999864
No 226
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.79 E-value=3e-05 Score=81.22 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
....+|+|||+|.+||.+|..|++.|++|+++|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3457999999999999999999999999999999999999754
No 227
>PRK06996 hypothetical protein; Provisional
Probab=97.79 E-value=2.1e-05 Score=80.90 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.5
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G----~~VlvlE~~~~ 56 (486)
+.+..+||+|||||++|+++|+.|+++| ++|+++|+.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4556799999999999999999999997 47999999764
No 228
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.79 E-value=2.2e-05 Score=83.20 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
.++||||||+|.+||.||..+++ |.+|+|+||....||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36899999999999999999976 99999999999887753
No 229
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.78 E-value=1.8e-05 Score=79.62 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.+.+.+.+.++..+..-+....|+.|..+ +++++||++.+|+.+.|+.||+
T Consensus 96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEE
Confidence 34455555566666666678899999887 7889999999999999999885
No 230
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.77 E-value=2.4e-05 Score=84.69 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG 59 (486)
.++||||||+|.+||.||+.++++ |.+|+|+||+...|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 468999999999999999999998 999999999987544
No 231
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.77 E-value=2.3e-05 Score=84.42 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
...+|+|||||++||++|.+|++.|++|+|+||+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 232
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.76 E-value=0.00092 Score=67.92 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred eEeecCCc----chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeC-----CCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~----~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~A~~VI~~ 333 (486)
..+...|+ |+|.+.|.+.+... |.+++++++|+.|.... +|+ +.|++. +.++++|+.|+++
T Consensus 169 at~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvG 239 (488)
T PF06039_consen 169 ATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVG 239 (488)
T ss_pred eeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence 34666775 89999999988887 99999999999999873 453 455432 2357899999875
No 233
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.75 E-value=2.5e-05 Score=75.22 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~ 60 (486)
.++||+|||+|..|++.|..|.+ .|.+|+|+|+++.|--.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqs 128 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQS 128 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccccc
Confidence 57899999999999999999853 37999999999987333
No 234
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.74 E-value=3e-05 Score=80.15 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=32.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS 59 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG 59 (486)
+|+|||||++||++|..|+++| .+|+|+||++.++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~ 38 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE 38 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC
Confidence 6999999999999999999998 59999999987653
No 235
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.73 E-value=3.3e-05 Score=82.04 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
++..++||||||+|.+||.||..++.+|.+|+++||....||++..
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 4567899999999999999999999999999999999999866543
No 236
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.73 E-value=3e-05 Score=83.50 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=36.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (486)
.++||||||+|++||.||+.++++ |.+|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 468999999999999999999987 47999999998877743
No 237
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=3.2e-05 Score=82.80 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
.++.+.|.+.+...|.++++++.|+++..++ +++++||.. .+|+ .++|+.||+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 4788888888888999999999999998872 344888753 4564 489999885
No 238
>PRK08275 putative oxidoreductase; Provisional
Probab=97.71 E-value=3.2e-05 Score=82.97 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
.++.+.|.+.++..|.+|+.++.|.+|..++ +|+++||.. .+|+ .++|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 4788999998888999999999999998752 577888763 3565 478999884
No 239
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.71 E-value=3.5e-05 Score=81.18 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCCccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~s 63 (486)
+||+||||+|.+|+.||..+++.|++|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999742 58887654
No 240
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.71 E-value=3.2e-05 Score=74.30 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcE--EEcCEEE-ECCCCC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFT 337 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~A~~VI-~~p~~~ 337 (486)
.+-++|.+..+..||.++.+-+|.+.... +|++..|.+.++.. ++|+.+| ++.++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence 67889999999999999999999999887 88888998888776 5788776 455543
No 241
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.70 E-value=3.8e-05 Score=78.91 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc--EEEcCEEEE
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~A~~VI~ 332 (486)
++.++|.+.++..|+++++++.|.++..+ ++++..|...+|+ .++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 79999999999999999999999999876 5666666555564 489999885
No 242
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.70 E-value=3.9e-05 Score=82.73 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCC---CeEEEEEe---CCCc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~---g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
..|.++|.+.+...|.+++.++.|.+|..++ + |+++||.. .+|+ .++|+.||+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 4788999998888999999999999998762 2 78888864 3565 478999885
No 243
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.69 E-value=3.3e-05 Score=76.30 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=44.8
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCcEEEEccCCCCCCCccccc------hhh-hhhhhhcCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IAD-LTHFLNSHS 77 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~----~--G~~VlvlE~~~~~GG~~~s~~------~~~-~~~~~~~~~ 77 (486)
+.+||+|||||.+||+||++|.+ + -.+|+|+|+...+||+.-|-. +++ +++|-.++.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a 144 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA 144 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC
Confidence 57999999999999999999843 3 458999999999999987653 223 356766643
No 244
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.68 E-value=0.0012 Score=66.67 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCCC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~~ 336 (486)
-.+.+.|.+.+..+|++|+.++.|+.|+.. ++.+.+|++++|.+|.||+||+.|-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence 467788888999999999999999999987 66678899999999999999976553
No 245
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.67 E-value=3.9e-05 Score=82.49 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCc
Q 011414 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (486)
++||||||+|++||.||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 58999999999888744
No 246
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.67 E-value=4.5e-05 Score=81.47 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=36.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+.++||||||+|.+||.||+.+++. .+|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3568999999999999999999986 899999999988874
No 247
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.66 E-value=6.3e-05 Score=79.30 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 346999999999999999999999999999999999999764
No 248
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.66 E-value=4.5e-05 Score=80.03 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
..+.++|.+.+...|.+++.+ .|+.+..+ ++++++|.. +|+.++|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 478999999999999999876 78888765 678888875 677899999885
No 249
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.62 E-value=5.4e-05 Score=80.72 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
+..+||+||||+|.+|+++|..|++.|++|++||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 346799999999999999999999999999999995
No 250
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.59 E-value=6.8e-05 Score=68.98 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
||||||||.+|+.||..|++.|++|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987654
No 251
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.58 E-value=9.3e-05 Score=79.66 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 446899999999999999999999999999999999999764
No 252
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=7.1e-05 Score=78.46 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
+|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999974 7877654
No 253
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.54 E-value=8.8e-05 Score=81.01 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 7 ~~~~~~~~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
|.-|-+|--| ...+-..|.|||+|.+||+||..|-|+|+.|+|+||.||+||....
T Consensus 1771 ~egwm~p~pp-~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1771 EEGWMKPCPP-AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred HhcCCccCCc-ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 3456666544 4667789999999999999999999999999999999999998764
No 254
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.54 E-value=0.00011 Score=74.36 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 46899999999999999999999999999999999999764
No 255
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.52 E-value=0.00012 Score=75.88 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCccc
Q 011414 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 16 ~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (486)
++-..+...|.|||+|.+||+||..|+++|+.|+++|+.+..||+...
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 333445579999999999999999999999999999999999999875
No 256
>PLN02785 Protein HOTHEAD
Probab=97.52 E-value=0.0001 Score=79.18 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=32.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
...||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999753
No 257
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.51 E-value=0.00015 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
.|+|||+|..|+-+|..|++.|.+|+++|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999987
No 258
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.51 E-value=0.00013 Score=80.75 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=37.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.+...|+|||+|.+||+||++|++.|++|+++|+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 46679999999999999999999999999999998877665
No 259
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.50 E-value=8.5e-05 Score=72.77 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=44.0
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.|.+.. .+|||+|||+|.+|-.||...++.|.+...+|++..+||-|-..
T Consensus 32 ~fa~~~-~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 32 SFASSA-NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred hhhccC-ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 355533 57999999999999999999999999999999999999987653
No 260
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.47 E-value=0.00012 Score=77.60 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
|||||||+|++|+.||..+++.|++|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998544443
No 261
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.47 E-value=9.2e-05 Score=79.12 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~ 56 (486)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 79999999754
No 262
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.47 E-value=0.00015 Score=75.02 Aligned_cols=44 Identities=14% Similarity=0.027 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHH-hhCCCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~L-a~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
....|+|||+|.+|+.||.+| ++.|++|.++|+.+.+||..+.-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 446799999999999999975 56799999999999999998753
No 263
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.47 E-value=0.00012 Score=78.96 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La----~~G~~VlvlE~~~~~ 57 (486)
||||||+|.+||.||+.++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998863
No 264
>PRK07846 mycothione reductase; Reviewed
Probab=97.44 E-value=0.00013 Score=76.35 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=33.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+||+||||+|.+|..||.+ ..|++|+++|+ +.+||-|-.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 4899999999999988866 46999999998 4689977654
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.42 E-value=0.00013 Score=76.22 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
+|||||||+|.+|..||++ .+|++|+++|+ +.+||.|-.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence 5999999999999998654 46999999998 5789988654
No 266
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.42 E-value=0.00014 Score=77.33 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCeEEEEEeCC-Cc--EEEcCEEEE
Q 011414 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A~~VI~ 332 (486)
..+.++|.+.+... |.+++.+++|.+|..+ +|+++||...+ ++ .++|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 47889998888765 8999999999999776 78888887643 33 589999884
No 267
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.41 E-value=0.00018 Score=81.54 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.++||||||+|.+||.||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999885
No 268
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.41 E-value=0.00013 Score=79.00 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
|||||+|.+||+||+.++++|.+|+|+||+..+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 799999999999999999999999999999977543
No 269
>PRK13984 putative oxidoreductase; Provisional
Probab=97.39 E-value=0.0002 Score=77.83 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
....+|+|||+|.+|+++|..|++.|++|+|+|+++..||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3567899999999999999999999999999999999999754
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.38 E-value=0.00018 Score=75.49 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.++.+.+.+..+..|.++++++.|++|..+ ++. +.|.+.+|+++.+|.||+.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a 269 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA 269 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence 467777888888999999999999999765 343 3466778999999998853
No 271
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.34 E-value=0.00018 Score=80.03 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~ 57 (486)
+|+|||||++||++|..|++. |++|+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999998 8999999999863
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.00026 Score=72.79 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
+..|||||||||++|+-||.+.||.|.+++++=-|
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45699999999999999999999999999988653
No 273
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.21 E-value=0.003 Score=62.01 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~s~ 64 (486)
.+..+-|||+|++||++|+.|-|. |.++.++|--+..||..-.-
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~ 68 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA 68 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence 345799999999999999999664 78999999999999976543
No 274
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.12 E-value=0.00035 Score=66.86 Aligned_cols=46 Identities=24% Similarity=0.310 Sum_probs=39.1
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414 17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 17 ~~~~~~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (486)
+.+...||.||||+|+.||+.|..|.-+ +.+|.|||+...++=..+
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS 90 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS 90 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec
Confidence 5666789999999999999999999877 999999999876654333
No 275
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.95 E-value=0.0011 Score=69.89 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~ 57 (486)
....||.||||||-+|++.|++|++. ..+||+||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 44689999999999999999999998 7999999996554
No 276
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.00097 Score=67.25 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=37.0
Q ss_pred CCCCCCC--CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 8 SELPVPP--YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 8 ~~~~~~~--~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
...|+|. .-+-..+.|||||||||++|+-||++.||-|-+.++|-.|
T Consensus 12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4566663 2222356899999999999999999999999998887654
No 277
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.86 E-value=0.001 Score=67.75 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
||+|||+|++||++|..|++. ++|+|+=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999999 999999998765
No 278
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.84 E-value=0.0013 Score=63.23 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=36.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
-|||||+|++||+|+..+-..|-.|++||++...||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999888999999999999754
No 279
>PRK09897 hypothetical protein; Provisional
Probab=96.83 E-value=0.0013 Score=69.83 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCC-CC
Q 011414 23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~G-G~ 60 (486)
++|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 58999999999999999998865 4899999999999 65
No 280
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.79 E-value=0.0016 Score=67.02 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p 334 (486)
++.+.+.+.++..|.++++++.|++|.. ++. +.|++.+|+++.||.||+..
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~ 237 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI 237 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence 5556677778889999999999999854 222 45778899999999999643
No 281
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0013 Score=63.52 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (486)
-+||.||||+|-+||+||-..++-|++|.+||-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 579999999999999999999999999999996
No 282
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.72 E-value=0.00051 Score=62.08 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=36.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCcc
Q 011414 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (486)
+-||||||+|-+||+||+..+++ ..+|.++|+.-.+||-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 35999999999999999999855 789999999999988544
No 283
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.63 E-value=0.0018 Score=67.56 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.++.+.+.+.++..|.++++++.|++|.. +++...|.+ +++++.||.||+.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a 241 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA 241 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence 46778888888999999999999999953 344455654 5567999998864
No 284
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.58 E-value=0.0026 Score=65.99 Aligned_cols=48 Identities=23% Similarity=0.147 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p 334 (486)
++.+.+.+.++..|.++++++.|++|. .+ .|.+++|+++.||.||..+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~ 276 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWST 276 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEcc
Confidence 577777788899999999999999884 22 3567899999999988643
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.44 E-value=0.003 Score=64.75 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
.+|+|||+|..||.+|..|++.|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 6899999999999999999999999999999999999876
No 286
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.39 E-value=0.0036 Score=65.22 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.++.+.+.+.++..|.++++++.|++|. .. .|++++|+++.+|.||..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence 4677788888889999999999999984 22 355678889999998854
No 287
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.26 E-value=0.015 Score=57.86 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=50.5
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
++.|.+|. ..+.+++.+.+.+.|++++.+++|+.|..+ ++++++|.+.+| +++||+||+.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence 55677774 689999999999999999999999999876 677778887666 8999998853
No 288
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.25 E-value=0.005 Score=59.98 Aligned_cols=44 Identities=23% Similarity=0.260 Sum_probs=40.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.+||..|||+|-+|+.+|.+.+..|.+|.++|..-.+||-|-..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 58999999999999999999999999999999999999987543
No 289
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0046 Score=59.81 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
..-|.|||||++|+-||..++++|.+|.+.|-++.=+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 3458999999999999999999999999999997766443
No 290
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.22 E-value=0.0052 Score=61.25 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=36.6
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccC--CCCCCC
Q 011414 15 YPPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGSH 60 (486)
Q Consensus 15 ~~~~~~~~~DViIIGaGl~GL~aA~~La~~----G~~VlvlE~~--~~~GG~ 60 (486)
..+.+...|||||||||+.|++.|+.|... -+||+++|.. +..|+.
T Consensus 29 ~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~ 80 (481)
T KOG3855|consen 29 AKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF 80 (481)
T ss_pred cccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccc
Confidence 344455589999999999999999999864 5799999998 444443
No 291
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.90 E-value=0.0041 Score=63.86 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=36.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+|||+|||||-.|.-+|.-.+-+|.+|.++|++|+--|-
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 599999999999999999999999999999999986553
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.75 E-value=0.011 Score=53.92 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||.|..||.+|+.||++|++|+-+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999864
No 293
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.54 E-value=0.015 Score=51.43 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.9
Q ss_pred EEECCChhHHHHHHHHhhC-----CCcEEEEccCCC
Q 011414 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF 56 (486)
Q Consensus 26 iIIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~ 56 (486)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999887 578999999766
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.49 E-value=0.015 Score=58.99 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~ 335 (486)
++.+.+.+.++..|.++++++.|++|. .+ .|.+.+|+++.+|.||+.+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG 240 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence 566777788889999999999999873 23 46678899999999996544
No 295
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.40 E-value=0.019 Score=58.35 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCc-EEEcCEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~A~~VI 331 (486)
-++.+...+..+.+|.+++++++|++|.- + +|++.+|+ +|.|+.+|
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence 46777777888999999999999999853 2 46677887 49999999
No 296
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.19 E-value=0.013 Score=55.70 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=37.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCCcc
Q 011414 22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~ 62 (486)
...++|||||+.|..+|++|++.+ ..|+++|+....||...
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 367999999999999999999998 89999999999988654
No 297
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.14 E-value=0.026 Score=51.20 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
|.|||+|..|...|..++++|++|.++|.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 78999999999999999999999999999643
No 298
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.12 E-value=0.024 Score=58.30 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999887653
No 299
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.031 Score=55.30 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCCcccc
Q 011414 21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~s~ 64 (486)
....|.|||+|.+|..+|..|-+ .+..|.++|+.+.++|..+.-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 44589999999999999998877 479999999999999998864
No 300
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=94.98 E-value=0.059 Score=54.99 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.5
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
+++|..|. ..+.++|.+.+.. |++++.+++|.+|..+ +++ ++|++.+|..++|++||+
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~ 184 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL 184 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence 56787785 6889999998888 9999999999999875 444 678888888899999884
No 301
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.94 E-value=0.03 Score=49.56 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 37899999999999999999999999999976
No 302
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=0.036 Score=56.82 Aligned_cols=42 Identities=21% Similarity=0.407 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC--C-CcEEEEccCCCCCCCccc
Q 011414 22 AFDLIVIGTGLPESVISAAASAS--G-KSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~--G-~~VlvlE~~~~~GG~~~s 63 (486)
.++|+|||+|.+|+..|..|.+. . .+|.|+|++...|+-..-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 37899999999999999999765 2 239999999999876543
No 303
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.02 Score=55.93 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcc
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (486)
..|||+|||+|.+|-+||.+.||.|.+.=++ .+|.||...
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 4599999999999999999999999987654 246788643
No 304
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.69 E-value=0.022 Score=57.18 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=27.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~ 56 (486)
.+|+|+||.|..+|+.|++|...+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999886 99999999764
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.66 E-value=0.042 Score=56.01 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~ 335 (486)
++.+.+.+.++..|.+++++++|++|..+ ++. +.|.+.+|+++.||.||+...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEECcC
Confidence 46667777888899999999999999764 333 467788999999999996533
No 306
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=94.59 E-value=0.2 Score=50.71 Aligned_cols=111 Identities=19% Similarity=0.183 Sum_probs=67.7
Q ss_pred cCCcHHHHHHhcCCChHHHHHHHHHHhhccCCchhhhhhhchhhHHHHHHHHHHhhhcccCCCcceEeecCCcchHHHHH
Q 011414 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (486)
Q Consensus 206 ~~~s~~~~l~~~~l~~~l~~~l~~~i~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~g~~~~p~gG~~~L~qal 285 (486)
...+..+||++.++++...+-+..+....+|.++. .+ ..+..++...+.. +| .+-++||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a~---~g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGAT---GG-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeecc---CC-ceEecCCHHHHHHHH
Confidence 45688999999999988766555555556676632 12 2222222222211 13 457999999999977
Q ss_pred HHHHHHcCcEEEeCCceeEEEEecCCCe-EEEEEeCC--CcEE-EcCEEEEC
Q 011414 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVLD 333 (486)
Q Consensus 286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~i-~A~~VI~~ 333 (486)
.+ .-|+++ +++.|++|.....++. ...|...+ +..- ..|.||+.
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA 182 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA 182 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC
Confidence 54 578899 9999999943222332 23444332 2222 35998864
No 307
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.56 E-value=0.045 Score=57.73 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
...|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 34799999999999999999999999999998764
No 308
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.05 Score=54.00 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+++...|.|||+|.-|...|.+|+++|++|+++.+++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3455679999999999999999999999999999864
No 309
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.50 E-value=0.045 Score=55.77 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 46999999999999999999999999999999887543
No 310
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.29 E-value=0.044 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 311
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.28 E-value=0.059 Score=56.14 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 36999999999999999999999999999999987554
No 312
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.24 E-value=0.049 Score=57.08 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.|.|||.|.+|+++|..|++.|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 3899999999999999999999999999998765
No 313
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.17 E-value=0.064 Score=46.83 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
|.|+|+|-.|+..|++|+++|++|.++.++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999853
No 314
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.16 E-value=0.054 Score=57.01 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999987643
No 315
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.04 E-value=0.063 Score=56.32 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4799999999999999999999999999999988754
No 316
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.90 E-value=0.17 Score=53.91 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=47.4
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC---CCc--EEEcCEEEE
Q 011414 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~A~~VI~ 332 (486)
+.+| .|. ..+..++.+.+..+|++|+.+++|++|..+ ++++++|++. +|+ +|+|+.||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 6677 453 578899999999999999999999999886 6777777753 343 689999884
No 317
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.75 E-value=0.078 Score=59.68 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p 334 (486)
+..+.+.+.++..|.++++++.|++|..+. ++....|.+++|+++.||.||+.+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence 445667788889999999999999996531 234557888999999999999643
No 318
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.73 E-value=0.075 Score=55.81 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 47999999999999999999999999999999887543
No 319
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=93.73 E-value=4.5 Score=41.17 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI 331 (486)
..+-+.+.+.+. .++++++++.|++|..+ ++ .+.|++++|++++|+.||
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~Vv 135 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVV 135 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEE
Confidence 456677777777 77889999999999875 33 356778999999999998
No 320
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.69 E-value=0.39 Score=48.76 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=46.4
Q ss_pred eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC-cEEEcCEEEE
Q 011414 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL 332 (486)
Q Consensus 271 ~~~p~gG-~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~A~~VI~ 332 (486)
.+||.-. ..++.++|.+.++..|.+|+++++|++| + +++ ..|++.++ +.++||+||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl 135 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL 135 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence 5799665 6899999999999999999999999999 3 333 56776543 5699999884
No 321
>PRK06370 mercuric reductase; Validated
Probab=93.69 E-value=0.084 Score=55.42 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999987654
No 322
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.59 E-value=0.094 Score=54.82 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+....|+|+|+|..|+.+|..|++.|++|+++|+++
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345679999999999999999999999999999975
No 323
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.57 E-value=0.078 Score=54.79 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..|.|||.|..|+..|..|+++|++|.++|++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 324
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.53 E-value=0.087 Score=55.11 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999988753
No 325
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.50 E-value=0.09 Score=51.44 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|||+|.-|...|..|+++|++|.++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 326
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.47 E-value=0.077 Score=51.95 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 489999999999999999999999999999854
No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.43 E-value=0.092 Score=55.27 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987543
No 328
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.41 E-value=0.092 Score=55.09 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 46999999999999999999999999999999887543
No 329
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.39 E-value=0.091 Score=54.77 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 3699999999999999999999999999999988754
No 330
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.36 E-value=0.097 Score=54.91 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999988754
No 331
>PRK07846 mycothione reductase; Reviewed
Probab=93.36 E-value=0.096 Score=54.80 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 479999999999999999999999999999998875
No 332
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.31 E-value=0.097 Score=55.01 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 3799999999999999999999999999999887644
No 333
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.29 E-value=0.11 Score=54.57 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999998765
No 334
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.089 Score=52.66 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58899999999999999999999999999864
No 335
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.26 E-value=0.1 Score=54.81 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 4699999999999999999999999999999988754
No 336
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.18 E-value=0.087 Score=59.06 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEECCC
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~p~ 335 (486)
++.+.+.+..+..|.++++++.|++|.. +++..+|++++|+++.||.||+.+.
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence 3455666778899999999999999864 3455678889999999999996443
No 337
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.18 E-value=0.12 Score=50.60 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 338
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.14 E-value=0.11 Score=50.77 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.|.|||+|.-|.-.|..|+++|++|+++|.++.-
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6899999999999999999999999999998653
No 339
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.12 E-value=0.11 Score=53.93 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998773
No 340
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.08 E-value=0.13 Score=54.07 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 47999999999999999999999999999999987653
No 341
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.01 E-value=0.11 Score=48.83 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
+++|||+|--|...|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999753
No 342
>PRK04148 hypothetical protein; Provisional
Probab=92.88 E-value=0.095 Score=44.70 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999877
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.71 E-value=0.12 Score=51.15 Aligned_cols=33 Identities=36% Similarity=0.424 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|.-|..-|..++++|++|.++|.++.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999763
No 344
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.68 E-value=0.13 Score=50.09 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 699999999999999999999999999998754
No 345
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.67 E-value=0.15 Score=53.71 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 47999999999999999999999999999999887543
No 346
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.66 E-value=0.31 Score=44.56 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEEC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~~ 333 (486)
.++.+-|.+.++.+|..+++++.|++|..+ +++ +.|++.+|++++|++||+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA 133 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence 456677777788889889999999999988 444 7899999989999999953
No 347
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.61 E-value=0.13 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 3699999999999999999999999999999887643
No 348
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.52 E-value=0.099 Score=50.49 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC--------CCCCCCccccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~--------~~~GG~~~s~~ 65 (486)
-+|+|||+|..|.-||.-..--|-+|+++|.| +.+||+..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 57999999999999999999999999999999 66788877653
No 349
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.50 E-value=0.15 Score=53.27 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 350
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.39 E-value=0.41 Score=50.56 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCCccc
Q 011414 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~s 63 (486)
+||||||||+.|+++|+.|++. |++|+||||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 6999999999999999999997 9999999998877754443
No 351
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=92.38 E-value=0.3 Score=50.34 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
||||||+|++||+||+.++++|.+|+|+||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 352
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.36 E-value=0.37 Score=50.98 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=46.0
Q ss_pred cceEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEEC
Q 011414 269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (486)
Q Consensus 269 g~~~~p~gG~---~~L~qal~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~~ 333 (486)
++.+.|.+|. +.+.++|.+.++..| ++++++++|++|..+. +++ +.|.+ .+|+ +++|++||+.
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence 3456677773 689999999998887 5999999999998752 443 33433 3464 6899998843
No 353
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.28 E-value=0.21 Score=52.48 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 369999999999999999999999999999998876653
No 354
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.22 E-value=0.15 Score=54.27 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 479999999999999999999999999999988763
No 355
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.16 E-value=0.17 Score=49.80 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|-.|...|..|+++|++|.+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 356
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.09 E-value=0.19 Score=52.42 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-+|..|++.|.+|.++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4699999999999999999999999999999887654
No 357
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.97 E-value=0.19 Score=49.34 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 599999999999999999999999999999763
No 358
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.84 E-value=0.2 Score=52.38 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 3699999999999999999999999999999887643
No 359
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.81 E-value=0.2 Score=49.49 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~ 55 (486)
.|.|||+|..|+++|..|++.| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999875
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.74 E-value=0.19 Score=52.52 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999865
No 361
>PTZ00058 glutathione reductase; Provisional
Probab=91.72 E-value=0.19 Score=53.89 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4699999999999999999999999999999988753
No 362
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.18 Score=46.38 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=35.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEcc---CCC-CCCCcccc
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSSL 64 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~---~~~-~GG~~~s~ 64 (486)
.-.|+|||+|.++-+||.+++|+-.|-+++|- |+. +||...|-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 34899999999999999999999999999994 443 47765543
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.69 E-value=0.21 Score=54.52 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 3699999999999999999999999999999998765
No 364
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.68 E-value=0.22 Score=49.17 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|||+|--|...|++|+++|.+|.++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 365
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.67 E-value=0.23 Score=51.76 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=34.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.++|||+|..|+=.|..+++-|.+|+|+|+++++--.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 5999999999999999999999999999999997553
No 366
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.67 E-value=0.19 Score=56.61 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
.++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 589999999999999999999999999999987543
No 367
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.65 E-value=0.29 Score=43.74 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.4
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccC
Q 011414 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 21 ~~~DViIIGaGl-~GL~aA~~La~~G~~VlvlE~~ 54 (486)
....|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 446899999995 7999999999999999999986
No 368
>PRK10262 thioredoxin reductase; Provisional
Probab=91.63 E-value=0.22 Score=49.50 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-.|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998865
No 369
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.58 E-value=0.19 Score=51.96 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999764
No 370
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.45 E-value=0.21 Score=53.28 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-+|+|||||.+|+-+|..|+..|++|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 47999999999999999999999999999998876
No 371
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.37 E-value=0.21 Score=53.71 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-.|+|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 372
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.33 E-value=0.23 Score=48.84 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (486)
.|.|||+|..|+..|..|+++|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.24 E-value=0.21 Score=50.03 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 59999999999999999999999999999853
No 374
>PLN02507 glutathione reductase
Probab=91.22 E-value=0.24 Score=52.49 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
-+|+|||+|..|+-.|..|++.|.+|+++++.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999988754
No 375
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.20 E-value=0.28 Score=48.43 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (486)
..|.|||+|..|+..|..|+..|+ +|.++|.++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 368999999999999999999887 8999998443
No 376
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.20 E-value=0.23 Score=50.05 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~ 56 (486)
-.|+|||+|..|+-+|..|++.|.+ |+++++.+.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 377
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.14 E-value=0.27 Score=48.28 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 378
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.12 E-value=0.28 Score=48.56 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999999999999999999999999999865
No 379
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.06 E-value=0.3 Score=43.65 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
..|+|+|+|-.|..||..|...|.+|.++|.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 57999999999999999999999999999985
No 380
>PRK06116 glutathione reductase; Validated
Probab=90.99 E-value=0.28 Score=51.33 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G 58 (486)
-.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 479999999999999999999999999999988764
No 381
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.98 E-value=0.32 Score=50.69 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 36999999999999999999999999999998877543
No 382
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=90.78 E-value=0.78 Score=49.68 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEc-CEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-~~VI~ 332 (486)
..|.++|.+.++..|++|+++++|++|..+ ++++++|+.. +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468899999999999999999999999876 6888888653 233 4788 87874
No 383
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.74 E-value=0.34 Score=49.29 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=35.7
Q ss_pred CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 15 ~~~~~~~~~DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+.++++....|.||| .|+-|...|..|+++|+.|.++++++
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 455566667799999 89999999999999999999999865
No 384
>PRK12831 putative oxidoreductase; Provisional
Probab=90.69 E-value=0.28 Score=51.51 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 385
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.62 E-value=0.3 Score=47.60 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
..|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999998755
No 386
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.56 E-value=0.28 Score=51.37 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~--G~~VlvlE~~~~ 56 (486)
..|.|||+|..|+.+|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3599999999999999999998 588999997653
No 387
>PRK13748 putative mercuric reductase; Provisional
Probab=90.47 E-value=0.33 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-.|+|||+|..|+-.|..|++.|.+|+++++++.+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 305 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF 305 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence 36999999999999999999999999999986533
No 388
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.41 E-value=0.34 Score=49.08 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~ 54 (486)
.+|+|||+|-.|..+|..|+++| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999999 999999997
No 389
>PLN02546 glutathione reductase
Probab=90.35 E-value=0.33 Score=52.15 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG 59 (486)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999888654
No 390
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.28 E-value=0.36 Score=47.96 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 391
>PRK14694 putative mercuric reductase; Provisional
Probab=90.23 E-value=0.37 Score=50.66 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
-.++|||+|..|+-.|..|++.|.+|+++++...+
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l 213 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL 213 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 46999999999999999999999999999975433
No 392
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=90.17 E-value=0.33 Score=41.72 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
++|+|+|+.+...|..++.-|++|+|+|.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 393
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.09 E-value=0.4 Score=47.44 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 394
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=90.06 E-value=0.3 Score=47.40 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CC-cEEEEccCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF 56 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~ 56 (486)
.+++.|+|||||-+|+..|+.+.+. |. +|-|+|..++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999999876 54 7899987653
No 395
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.05 E-value=0.37 Score=48.47 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~ 57 (486)
++..+|+|.||-|...|..|++|...+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 567799999999999999999999875 889999998764
No 396
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.02 E-value=0.34 Score=47.19 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||.|+-|...|..|+++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 397
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=90.00 E-value=1.1 Score=45.51 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=25.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEE
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHL 51 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~Vlvl 51 (486)
||||||||++|+.||+++||.|.+|+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999999999
No 398
>PRK07121 hypothetical protein; Validated
Probab=89.97 E-value=0.9 Score=48.12 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEc-CEEEE
Q 011414 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (486)
Q Consensus 278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-~~VI~ 332 (486)
...+.++|.+.++..|++|+++++|++|..++ +|++++|+.. +|+ .++| +.||+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 45789999999999999999999999998762 5688888764 333 4788 88884
No 399
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.96 E-value=0.43 Score=42.13 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~ 53 (486)
+.+...|+|||||-.|+.-|..|.+.|.+|+|+..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34556799999999999999999999999999953
No 400
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.94 E-value=0.41 Score=44.30 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+...|+|||||-.|...+..|.+.|.+|+|+..+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34579999999999999999999999999998753
No 401
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.91 E-value=0.47 Score=39.19 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
|||+|.|--|...|..|.+.|.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999753
No 402
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.86 E-value=0.45 Score=47.45 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|||+|--|...|..|+++|++|.+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999964
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.84 E-value=0.38 Score=48.84 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999863
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.80 E-value=0.44 Score=44.01 Aligned_cols=35 Identities=11% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
.+...|+|||||-.|...|..|.++|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34568999999999999999999999999999763
No 405
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=89.74 E-value=1.5 Score=47.42 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred eecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 273 ~p~gG~~-~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
++..++| .|.++|.+.+...|.+|+.+++|++++.+ +|+++||.. .+|+ .|+|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 4444444 78999999888899999999999999886 789999864 3565 478999995
No 406
>PRK14727 putative mercuric reductase; Provisional
Probab=89.59 E-value=0.45 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|+|||+|..|+-.|..|++.|.+|+++++...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 222 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL 222 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 3699999999999999999999999999997543
No 407
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=89.56 E-value=1.2 Score=48.33 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC-Cc--EEEc-CEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-~~VI~ 332 (486)
..|.++|.+.++..|++++++++|.++..+ ++++++|+..+ |+ ++.| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 378899999999999999999999999876 78888987644 33 4676 56774
No 408
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.56 E-value=0.48 Score=42.04 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|-|||.|..|...|..|.++|++|.++|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999999999999999864
No 409
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.54 E-value=0.35 Score=41.00 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.......|.|||+|=.|-..|.+|.++|+.|.-+..++
T Consensus 6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34567899999999999999999999999998776653
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.47 E-value=0.28 Score=39.90 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3456789999999999999999999999999999875
No 411
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.47 E-value=0.41 Score=48.95 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48899999999999988885 999999998764
No 412
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.25 E-value=1.3 Score=46.91 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.7
Q ss_pred cceEeecCCc---chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCeEEEEE---eCCCc--EEEcCEEEEC
Q 011414 269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (486)
Q Consensus 269 g~~~~p~gG~---~~L~qal~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~A~~VI~~ 333 (486)
++.+.|.+|. +.|.++|++.+.. .|++++++++|..|..+. ++. +.|+ +.+|+ +++||.||+.
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 3455677763 6899999998864 589999999999997652 333 3443 33453 6899998853
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.12 E-value=0.47 Score=47.27 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 414
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.05 E-value=0.48 Score=50.26 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999975
No 415
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=89.01 E-value=1.6 Score=45.19 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+|||||||+|++|+++|..|+++|++|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999974
No 416
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.97 E-value=0.6 Score=48.72 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987653
No 417
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.94 E-value=0.47 Score=49.73 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|+|.|.+|.++|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 418
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.90 E-value=0.75 Score=42.39 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=32.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 19 ~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+.....++|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3444579999999999999999999999999999873
No 419
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=88.88 E-value=0.25 Score=47.51 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASG 45 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G 45 (486)
...+++|||+|..||++|..+.+.+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~ 26 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELY 26 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhh
Confidence 3468999999999999999888865
No 420
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.88 E-value=0.61 Score=42.99 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~ 54 (486)
...|.|||+|--|+.+|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 59998885
No 421
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=88.78 E-value=0.46 Score=50.18 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 422
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.73 E-value=0.44 Score=43.96 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
...|.|||+|+-|+-.|-..+.+|+.|.++|++.-
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35799999999999999999999999999999854
No 423
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.66 E-value=0.55 Score=43.89 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.9
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIG-aGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.||| +|.-|.+.|..|+++|++|.++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 79999999999999999999998754
No 424
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.60 E-value=0.59 Score=48.78 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|+|+|+|-.|.++|..|++.|++|.+.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999765
No 425
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.57 E-value=0.74 Score=39.44 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCc-EEEEccC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~ 54 (486)
...|+|||+|=+|-.++.+|+..|.+ |.++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999987 9999875
No 426
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.54 E-value=0.52 Score=49.42 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (486)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999998 8999998764
No 427
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.50 E-value=0.46 Score=50.31 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 499999999999999999999999999998754
No 428
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.40 E-value=0.48 Score=50.16 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 429
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=88.39 E-value=1.7 Score=45.10 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
..+-+.|.+.++..|++++.+++|++|..+ ++++++|+ ++|++++|+.||.
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~ 158 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL 158 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence 356667888888899999999999999876 66666665 5778899999884
No 430
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=88.15 E-value=0.59 Score=49.41 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCCC
Q 011414 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG 59 (486)
-.|+|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999997554 45999999999998753
No 431
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.02 E-value=0.64 Score=45.93 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~ 56 (486)
.|+|||+|..|.++|..|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4899999999999999999999 57999999753
No 432
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.98 E-value=0.57 Score=49.27 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..|+|+|.|-+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 433
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.76 E-value=0.7 Score=48.67 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=34.2
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 14 ~~~~~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.+.+.. |.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus 9 ~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 9 ALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred hcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 455656554 9999999999999999999999999999753
No 434
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.76 E-value=0.77 Score=44.27 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~ 55 (486)
...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 357999999999999999999999 6899999753
No 435
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.60 E-value=0.7 Score=47.92 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCcEEEEccCCCCCCC
Q 011414 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~--------------~G~~VlvlE~~~~~GG~ 60 (486)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~ 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence 79999999999999999875 58999999999877543
No 436
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=87.57 E-value=0.84 Score=47.63 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
.+|+|||+|-++...|..|++.|.+|.++=|++-+
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 58999999999999999999999999999887654
No 437
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.49 E-value=0.62 Score=45.89 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~ 55 (486)
|.|||+|..|...|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 438
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.47 E-value=0.76 Score=48.00 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
|+.++--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 45555669999999999999999999999999999875
No 439
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.44 E-value=0.67 Score=49.20 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|.|||+|.-|.-.|..|+++|+.|.++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999998864
No 440
>PRK06175 L-aspartate oxidase; Provisional
Probab=87.44 E-value=2.4 Score=44.14 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
.++||||||+|.+||+||..++ .|.+|++|||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999988775
No 441
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.28 E-value=0.66 Score=45.41 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 25 ViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999999999999999999999999874
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.27 E-value=0.57 Score=51.96 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..|.|||+|..|.-.|..++++|++|.++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999854
No 443
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.24 E-value=0.69 Score=48.92 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|+|+|.|.+|++++..|.+.|.+|.+.|.+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 59999999999999999999999999999753
No 444
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.08 E-value=0.66 Score=47.96 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
...|.|+|-|.+|+++|..|.+.|.+|.+.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 356999999999999999999999999999987766
No 445
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=87.02 E-value=2.1 Score=41.19 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-----------CCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----------~G~~i~A~~VI~ 332 (486)
.++.+.|.+.+...|+++++++.|+.+..++ ++++.+|.+. +..+++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 5788889999999999999999999998762 4477777653 124689999883
No 446
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.98 E-value=1.3 Score=45.30 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 14 ~~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+|.+.+.+...|+|+|+ |..|..++..|.++|++|.++.++.
T Consensus 52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 47677777778999997 9999999999999999999998864
No 447
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.98 E-value=1 Score=45.68 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=34.1
Q ss_pred CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccC
Q 011414 15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 15 ~~~~~~~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
.|.+......|+|.|+ |.-|..++.+|.+.|++|+.+++.
T Consensus 14 ~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 14 EPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3444456678999998 999999999999999999999975
No 448
>PRK06847 hypothetical protein; Provisional
Probab=86.80 E-value=2.3 Score=42.93 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
...||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998753
No 449
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=86.66 E-value=2.1 Score=43.63 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~ 57 (486)
...+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 46789999999999999999999999999999998753
No 450
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.51 E-value=0.75 Score=50.95 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..|.|||+|..|.-.|..++++|++|.++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998753
No 451
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.45 E-value=0.92 Score=44.78 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~ 56 (486)
..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999654
No 452
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=86.40 E-value=0.79 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999874
No 453
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=86.39 E-value=2.1 Score=46.45 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcCE-EEE
Q 011414 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (486)
Q Consensus 278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~~-VI~ 332 (486)
...+...|.+.++..|.+|+++++|++|..++ +|+++||... +|+ .++|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 35677778888889999999999999999863 6889888653 344 367874 773
No 454
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=86.36 E-value=1.8 Score=45.06 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCCc
Q 011414 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (486)
||||||+|++|++||+.++++| .+|+||||++..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 455
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.36 E-value=0.77 Score=51.40 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~-VlvlE~~~~ 56 (486)
-.|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998765
No 456
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=86.33 E-value=2.6 Score=42.75 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
+.++||||||+|+.||++|++|+++|.+|+++|++...+|.+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s 43 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAA 43 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcch
Confidence 456899999999999999999999999999999998776433
No 457
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.99 E-value=0.79 Score=48.35 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
-.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999875
No 458
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=85.93 E-value=2.4 Score=45.64 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcC-EEEE
Q 011414 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (486)
Q Consensus 278 ~~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~-~VI~ 332 (486)
...|.+.|.+.++..|++++++++|++|+.+ +++++||+.. +|+ .+.|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3578889999999999999999999999887 7889998763 454 47785 4774
No 459
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.92 E-value=3.6 Score=44.54 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCC
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~ 60 (486)
|.++||||||+|.+||.||+.++++| .+|+|+||....||.
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 35689999999999999999999874 899999999877764
No 460
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.92 E-value=3.1 Score=44.99 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=46.8
Q ss_pred EeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 272 ~~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
.++..+. ..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||.. .+|+ .|+|+.||+
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3444444 478899999888899999999999999875 2689999864 3565 478999985
No 461
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=85.85 E-value=2.2 Score=32.58 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCC
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G 322 (486)
.++.+.+.+..+..|.++++++.|++|..++ ++ +. |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEecC
Confidence 4677888888999999999999999999872 44 55 888886
No 462
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=85.85 E-value=3.5 Score=44.52 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
||||||+|++||+||+.++++|.+|+||||....||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877743
No 463
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=85.79 E-value=3 Score=39.94 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--eEEEEEeCC-----------CcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~A~~VI~ 332 (486)
.++.+.|.+.+...|++++.++.|+.+..+ ++ ++.||.+.. ..+++|+.||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 478888888889999999999999999886 44 678887632 24689999883
No 464
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.73 E-value=1.7 Score=33.88 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCcEEEEcc
Q 011414 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~-G~~VlvlE~ 53 (486)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35699999999999999999998 789999988
No 465
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.70 E-value=1.2 Score=42.51 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
...++|+|+|+-+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997755
No 466
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=85.69 E-value=2.4 Score=45.87 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCC--Cc-EEEcC-EEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~A~-~VI~ 332 (486)
.+|.++|.+.++..|++|+++++|++|..+ ++++++|+..+ ++ .+.++ .||+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl 269 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL 269 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence 578999999999999999999999999887 78888887643 33 37786 5764
No 467
>PRK07831 short chain dehydrogenase; Provisional
Probab=85.66 E-value=1.5 Score=41.91 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.3
Q ss_pred cccEEEECC-C-hhHHHHHHHHhhCCCcEEEEccCC
Q 011414 22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGa-G-l~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..-++|.|+ | --|..+|..|++.|++|.+++++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356999997 5 478999999999999999988753
No 468
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.61 E-value=0.97 Score=46.43 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4799999999999999999999999999998753
No 469
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=85.45 E-value=2.8 Score=42.50 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 011414 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~ 57 (486)
||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999998654
No 470
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.35 E-value=1.5 Score=38.21 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G-~~VlvlE~~~ 55 (486)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 356999999999999999999996 8999999864
No 471
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=85.34 E-value=1 Score=44.12 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
.|.|||.|.-|...|..|++.|++|.+++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999874
No 472
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.34 E-value=0.95 Score=46.84 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
-.|.|||-|.+|.++|..|.+.|++|...|.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3699999999999999999999999999997653
No 473
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.15 E-value=0.86 Score=50.65 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
..|.|||+|.-|.-.|..++.+|++|.++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3599999999999999999999999999998764
No 474
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.14 E-value=1.1 Score=43.95 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999998
No 475
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=85.06 E-value=2.6 Score=43.00 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
.+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999997
No 476
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.93 E-value=1.2 Score=44.55 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~ 54 (486)
...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999999999999999999998 89999984
No 477
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.93 E-value=0.88 Score=44.95 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 24 DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.+.|+|+|--|+..|++|+++|..|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 489999999999999999999988888877664
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.93 E-value=1.6 Score=39.89 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccC
Q 011414 21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 21 ~~~DViIIGa-Gl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3457999996 999999999999999999999876
No 479
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=84.88 E-value=3.1 Score=40.18 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCcEEEcCEEEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~A~~VI~ 332 (486)
..+-+.|.+.++..|.++++++.|+++..+ ++++ .|.+. ++.+++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 457788888888999999999999999876 4443 34333 456799999884
No 480
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=84.87 E-value=3 Score=42.61 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G--~~VlvlE~~~~ 56 (486)
.|||+|||||++||++|..|+++| ++|+|+|+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999996 99999999864
No 481
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=84.82 E-value=1.2 Score=43.44 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~ 55 (486)
..|+|||+|-+|.++|..|++.|. +|.|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999996 799999874
No 482
>PRK10015 oxidoreductase; Provisional
Probab=84.79 E-value=3.2 Score=43.10 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEEE
Q 011414 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (486)
Q Consensus 280 ~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI~ 332 (486)
.+-+.|.+.++..|++++.++.|+.|..+ ++++++|+. ++++++|+.||.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~-~~~~i~A~~VI~ 158 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA-GDDILEANVVIL 158 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe-CCeEEECCEEEE
Confidence 45566778888899999999999999776 567667764 566899999984
No 483
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.66 E-value=1.2 Score=43.75 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
...|.|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999999999999984
No 484
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=84.59 E-value=3.1 Score=44.83 Aligned_cols=52 Identities=25% Similarity=0.387 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEeC-CCc--EEEcCE-EEE
Q 011414 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (486)
Q Consensus 279 ~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A~~-VI~ 332 (486)
..+.+.|.+.++..|++++++++|++|..+ ++++++|+.. +|+ .++|++ ||+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl 263 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL 263 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence 467888888888999999999999999876 6788888763 454 478864 774
No 485
>PLN02256 arogenate dehydrogenase
Probab=84.48 E-value=1.4 Score=43.52 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
...|.|||.|.-|...|..|++.|++|.+++++.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3579999999999999999999999999999875
No 486
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.46 E-value=1.6 Score=43.46 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~ 57 (486)
..|.|||+|..|...|..|+..|. +|.++|.+...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 579999999999999999999996 89999998764
No 487
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.34 E-value=1.3 Score=47.07 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~ 55 (486)
..|.|+|-|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 359999999999999999999999999999865
No 488
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.22 E-value=1 Score=49.90 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La-~~G~~VlvlE~~~~ 56 (486)
..|.|||+|..|...|..++ ++|++|.++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 35999999999999999998 68999999999853
No 489
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.21 E-value=1 Score=43.82 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCcccc
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (486)
.-|+|||.|+-|-+.|..|.++|+.|.++.+....+......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 469999999999999999999999999999988775544443
No 490
>PRK07045 putative monooxygenase; Reviewed
Probab=84.11 E-value=3.4 Score=42.13 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=42.8
Q ss_pred chHHHHHHHHHH-HcCcEEEeCCceeEEEEecCCCeEEEEEeCCCcEEEcCEEE-ECC
Q 011414 279 GELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (486)
Q Consensus 279 ~~L~qal~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A~~VI-~~p 334 (486)
..|-+.|.+.++ ..|.++++++.|+.|..++ ++.++.|++++|++++||.|| ++.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEECCC
Confidence 357777777765 4678999999999998762 555567888899999999999 443
No 491
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.05 E-value=1.1 Score=46.91 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~ 54 (486)
..|.|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 369999999999999999995 9999999965
No 492
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.02 E-value=4 Score=44.38 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=38.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCC
Q 011414 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (486)
Q Consensus 18 ~~~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~ 60 (486)
+...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 3445799999999999999999999999999999998776664
No 493
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.95 E-value=3.5 Score=44.54 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCCc
Q 011414 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (486)
Q Consensus 20 ~~~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (486)
..++||||||+|.+||.||..++++|.+|+|+||....||.+
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 356899999999999999999999999999999998777743
No 494
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.89 E-value=4.3 Score=44.03 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=45.6
Q ss_pred eecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 273 ~p~gG~-~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
++..++ ..|.++|.+.+...|.++++++.|+++..+ ++|+++||.. .+|+ .++|+.||+
T Consensus 136 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 200 (588)
T PRK08958 136 AAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTAICIETGEVVYFKARATVL 200 (588)
T ss_pred ecCCCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 343344 478899988888899999999999999875 2688999874 3565 478999985
No 495
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.86 E-value=1.1 Score=46.92 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
.+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998654
No 496
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.84 E-value=3.4 Score=42.32 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 011414 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 22 ~~DViIIGaGl~GL~aA~~La~~G~~VlvlE~~~~ 56 (486)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 47999999999999999999999999999999874
No 497
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.79 E-value=1.8 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414 21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (486)
Q Consensus 21 ~~~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~ 55 (486)
....|.|||+|..|.++|..|+..|. .+.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34689999999999999999999998 799999864
No 498
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.67 E-value=1.1 Score=47.02 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 011414 23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (486)
Q Consensus 23 ~DViIIGaGl~GL~-aA~~La~~G~~VlvlE~~~~ 56 (486)
..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 35999999999999 69999999999999998765
No 499
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=83.58 E-value=4.1 Score=44.51 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=45.2
Q ss_pred eecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCeEEEEEe---CCCc--EEEcCEEEE
Q 011414 273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (486)
Q Consensus 273 ~p~gG~---~~L~qal~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~A~~VI~ 332 (486)
++..|. ..+..+|.+.++..|++++.+++|.+|..++.++++++|++ .+|+ +++|+.||.
T Consensus 223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 444453 48889999999999999999999999987521356777765 2444 579999984
No 500
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.58 E-value=1.4 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 011414 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (486)
Q Consensus 23 ~DViIIGaGl~GL~aA~~La~~G~--~VlvlE~~~ 55 (486)
..|.|||+|..|...|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999995 899999874
Done!