Query 011416
Match_columns 486
No_of_seqs 471 out of 1247
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 07:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.9E-44 2.4E-48 348.3 34.6 424 21-483 8-477 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 9E-43 3.1E-47 336.7 29.5 399 20-469 23-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 4.7E-40 1.6E-44 316.4 39.7 376 19-465 20-429 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.2E-35 4.2E-40 289.9 26.7 415 33-475 21-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4.7E-36 1.6E-40 282.3 13.0 352 28-453 3-361 (375)
6 2cfq_A Lactose permease; trans 100.0 1.9E-32 6.6E-37 260.8 19.7 382 35-476 17-407 (417)
7 2xut_A Proton/peptide symporte 100.0 2.5E-31 8.6E-36 261.5 20.0 424 34-480 21-514 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 1.5E-15 5.2E-20 146.0 21.7 180 282-473 27-211 (451)
9 3o7q_A L-fucose-proton symport 99.6 1.4E-14 4.7E-19 138.8 20.3 174 283-467 26-228 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.6 5.5E-14 1.9E-18 136.7 19.9 179 285-468 15-196 (491)
11 2gfp_A EMRD, multidrug resista 99.6 2.6E-14 9E-19 133.7 13.0 153 322-474 28-180 (375)
12 2cfq_A Lactose permease; trans 99.5 1.1E-13 3.6E-18 131.5 13.2 146 58-203 257-405 (417)
13 2xut_A Proton/peptide symporte 99.5 3.6E-13 1.2E-17 132.1 17.1 172 288-469 17-199 (524)
14 4gc0_A D-xylose-proton symport 99.3 1.5E-11 5.2E-16 119.4 12.4 171 32-202 284-467 (491)
15 2g9p_A Antimicrobial peptide l 68.0 2.5 8.7E-05 19.8 1.3 14 79-92 2-15 (26)
16 3l1l_A Arginine/agmatine antip 22.1 3.2E+02 0.011 24.9 8.5 13 75-87 55-67 (445)
17 2dw3_A Intrinsic membrane prot 21.5 1.8E+02 0.006 19.0 5.0 34 442-475 27-60 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.9e-44 Score=348.30 Aligned_cols=424 Identities=19% Similarity=0.221 Sum_probs=318.4
Q ss_pred chHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCC--------CcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHH
Q 011416 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMG 92 (486)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~ 92 (486)
++.+.+.++.+++.++.++|...++..+|.+.++++. +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4566666777788899999999999999999888743 34567999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhh------------------cCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHH
Q 011416 93 FLGEALVTAGAGLLSS------------------FSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIF 153 (486)
Q Consensus 93 ~~~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~ 153 (486)
+.++.+++.+++++++ +++|+++++++|+++|++.|.. +....++.|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999888 4789999999999999999998 78889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--------CCcHHHHHHhHHHHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhc
Q 011416 154 SSFWTIGSVSEAIGAWIIMPR--------LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVN 225 (486)
Q Consensus 154 ~~~~~~G~~i~~~l~~~l~~~--------~~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (486)
+.+..+|.++++.++..+... .+||..+.+..++.++..+..+++||+|+|+..+++.+++++.+++....+
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 999999999999988876542 458888888888888888889999999999999999999888877665432
Q ss_pred CCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416 226 KTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 305 (486)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (486)
....+..+..+. .++.+........++.+ +.........+......+....+
T Consensus 248 ~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 299 (491)
T 4gc0_A 248 LATQAVQEIKHS--------------------------LDHGRKTGGRLLMFGVG--VIVIGVMLSIFQQFVGINVVLYY 299 (491)
T ss_dssp HHHHHHHHHHHH--------------------------HHHHHHHTTHHHHSCCT--HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHH--------------------------HHhhhhhhhHHHHhccc--HHHHHHHHHHHHHHhhhhHHHhc
Confidence 211000000000 00000000111111111 12222222233333333444444
Q ss_pred HhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhh----hch
Q 011416 306 ISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQS 381 (486)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~ 381 (486)
.+.+. +..+.+...........++..+++.++++++.||+|||+.+..+...++++++.+.. ..+
T Consensus 300 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~ 368 (491)
T 4gc0_A 300 APEVF-----------KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368 (491)
T ss_dssp HHHHH-----------HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred chHHH-----------HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc
Confidence 44433 223456666677777888999999999999999999999999888888777766543 112
Q ss_pred hHH-HHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHH------hhccchHHHHH
Q 011416 382 NIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA------NCHQMTAVVLL 454 (486)
Q Consensus 382 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~------~~g~~~~~~~~ 454 (486)
.+. .....+....+..+..++.+.+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~ 448 (491)
T 4gc0_A 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 448 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 222 22222223333445567888999999999999999999999999999999988776543 34566778899
Q ss_pred HHHHHHHHHHHhcccccccCCCccccccc
Q 011416 455 VVVIVTSILSVMLIPFETKGQELSDTVDF 483 (486)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
+++++++.++.+++.||||++++||.++.
T Consensus 449 ~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 449 GCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 99999999999999999999999887653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=9e-43 Score=336.74 Aligned_cols=399 Identities=12% Similarity=0.132 Sum_probs=315.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q 011416 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALV 99 (486)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~ 99 (486)
++.++..+..+++..+...++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 456677888888899999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhc----CCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011416 100 TAGAGLLSSF----SPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR 174 (486)
Q Consensus 100 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~ 174 (486)
.+++.+++++ ++|++.++++|+++|++.+.. +...+++.|++|+++|++++++.+.+.++|.+++|.+++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999988 77889999999999999999999999999999999999998888
Q ss_pred CC-cHHHHHHhHHHHHHHH-HHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccch
Q 011416 175 LD-WRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 252 (486)
Q Consensus 175 ~~-w~~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (486)
.| ||+.|++.+++.++.. +.++++||+|+....+++.+..+ +.+++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~------ 230 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------------------------DYPDDY------ 230 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------------------------C-----------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-------------------------cccccc------
Confidence 88 9999999988877754 45667788765321111000000 000000
Q ss_pred hhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhH
Q 011416 253 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 332 (486)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (486)
+..++++........+.+++++. ++...+..+.....++....+.+.+.+ +..|.++.+.+
T Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~g~~~~~~~ 291 (451)
T 1pw4_A 231 ------NEKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLK----------EVKHFALDKSS 291 (451)
T ss_dssp --------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBT----------TBSCCCHHHHH
T ss_pred ------hhhhhcccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCHHHHH
Confidence 00000000111112344554433 333444444455566666667776552 23588899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHh--chhHHHHHHHHHHH-HHHHHHhhh--chhHHHHHHHHHHHHhhhhhhhhHhhhc
Q 011416 333 IDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTY--QSNILTTGLLFGARMCVMGAFTVSLIYA 407 (486)
Q Consensus 333 ~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (486)
.......++.+++.++.|++.||+ ++|+.+..+..+.. ++++++... .+.+......++.+++.+...+....+.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 371 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHA 371 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 999999999999999999999999 99988887776666 555555543 3555666677778888888888889999
Q ss_pred cccccccchhhHhHHHHHHHHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416 408 AEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 469 (486)
Q Consensus 408 ~~~~~~~~~~~~~g~~~~~~~~-g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 469 (486)
.|.+|++.|++++|+.+.+.++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+...
T Consensus 372 ~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 372 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999998888888888888777666654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.7e-40 Score=316.44 Aligned_cols=376 Identities=11% Similarity=0.026 Sum_probs=296.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q 011416 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEAL 98 (486)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~ 98 (486)
.+++++..+..+++..+..+++....++..|.+.+++|++..+.|++.+++.+++.++++++|+++||+|||++++++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 20 QSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 34556667777788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhh---hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 011416 99 VTAGAGLLS---SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-P 173 (486)
Q Consensus 99 ~~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~-~ 173 (486)
+.+++.+++ ++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|.++++.+++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 89999999999999999999988 788899999999999999999999999999999999999988 5
Q ss_pred CCC-------------------------cHHHHHHhHHHHHHHHHHhhc--cCCCchhhhhcCChHHHHHHHHHHHHhcC
Q 011416 174 RLD-------------------------WRWLLGLSSIPSFILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNK 226 (486)
Q Consensus 174 ~~~-------------------------w~~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (486)
..+ ||+.|++.+++.++..+..++ .||+++....++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~----------------- 242 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDA----------------- 242 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCS-----------------
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc-----------------
Confidence 554 999998887776665444333 344332100000
Q ss_pred CCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011416 227 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 306 (486)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
+++.....++++++++..+.... ..+.....++....+.
T Consensus 243 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 281 (438)
T 3o7q_A 243 --------------------------------------KQGSFSASLSRLARIRHWRWAVL---AQFCYVGAQTACWSYL 281 (438)
T ss_dssp --------------------------------------STTSHHHHHHHHTTCSHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred --------------------------------------cccchhhhHHHHHhChHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 00111124555665554443333 2333333444444555
Q ss_pred hhh-ccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHH
Q 011416 307 SEL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT 385 (486)
Q Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (486)
+.+ .+ +..|.+..+++.......++.+++.++.|++.||++||+.+..+.++.+++.+++...++.+.
T Consensus 282 ~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (438)
T 3o7q_A 282 IRYAVE----------EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG- 350 (438)
T ss_dssp HHHHHH----------HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_pred HHHhhh----------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence 544 31 234788999999999999999999999999999999999999999888888777776655544
Q ss_pred HHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHH
Q 011416 386 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILS 464 (486)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 464 (486)
....++.+++.+...+..+++..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.|..| +...+.+.+++.++..++
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34446777888888999999999999977 888888877 778999999999999999999 887777765555544443
Q ss_pred H
Q 011416 465 V 465 (486)
Q Consensus 465 ~ 465 (486)
.
T Consensus 429 ~ 429 (438)
T 3o7q_A 429 A 429 (438)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=1.2e-35 Score=289.86 Aligned_cols=415 Identities=11% Similarity=-0.004 Sum_probs=264.3
Q ss_pred HHHHHHhhHhhhh-chhchhhhh-----cCCCcchhHHHHHHHHHHHHHHHHHHhhhhhh-hcchHHHHHHHHHHHHhhh
Q 011416 33 GWVAEAMEIMILS-FVGPTVKSE-----WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRRMGFLGEALVTAGAGL 105 (486)
Q Consensus 33 ~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~ 105 (486)
..+...+...... ...+.+.++ +|.+..+.|++.+++.++..++++++|+++|| +|||+++..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 3344433333333 333444444 99999999999999999999999999999999 8999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 011416 106 LSSFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 182 (486)
Q Consensus 106 ~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~ 182 (486)
++++++|++.++++|+++|++.+.. +...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+..|||+.|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 101 VLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp HHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999988 788899999999988 7778888999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhhcc-CCCch----hhhhcCChHHHHHHHHH--------------HHHhcCCCCCCchhhhccccCCC
Q 011416 183 LSSIPSFILLAFLGFQ-PESPR----YLCLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPT 243 (486)
Q Consensus 183 ~~~~~~~~~~~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 243 (486)
+.++..++..+...+. ++..+ ....+.+.++.++..+. ....+..+. ++........ .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~ 257 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL--PAYINLLTIV-A 257 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT--THHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhhhhHH-H
Confidence 9877666654443322 22111 00011122222221111 000111000 0000000000 0
Q ss_pred CCCCCccchhhcccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCcccc
Q 011416 244 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFS 323 (486)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (486)
.. ..........++... ...+ +++. ...+..+...+.....+.....+.+.+.. +.
T Consensus 258 -~~--~~~~~~~~~~~~~~~--------~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 313 (491)
T 4aps_A 258 -IA--IPVFYFAWMISSVKV--------TSTE--HLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAA----------ER 313 (491)
T ss_dssp -HH--HHHHHHHHHC----------------------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHH----------HS
T ss_pred -HH--HHHHHHHHHhhcccc--------cHHH--HHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHH----------HH
Confidence 00 000000000000000 0000 0000 11111111111111222211122221111 11
Q ss_pred CCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHHHHHhhh---------chhHHHHHHH
Q 011416 324 HHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-----IMFTLSCLFLLPLVTY---------QSNILTTGLL 389 (486)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 389 (486)
.+.+....+.......+..+++.++.+++.||++||+... .+..+.+++++++... .+.+......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4aps_A 314 VDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW 393 (491)
T ss_dssp CCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH
T ss_pred hccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 2344456667777888888999999999999999876544 6666666666655542 2455666677
Q ss_pred HHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416 390 FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 469 (486)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 469 (486)
++.+++.+...+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+. ++...+..++++++++.++.+.+.
T Consensus 394 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 472 (491)
T 4aps_A 394 ALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLS 472 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888899999999999999999999999999999999999998877654 666778888888887777777666
Q ss_pred ccccCC
Q 011416 470 FETKGQ 475 (486)
Q Consensus 470 ~~~~~~ 475 (486)
++.+++
T Consensus 473 ~~~~~~ 478 (491)
T 4aps_A 473 KRIQGL 478 (491)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.7e-36 Score=282.31 Aligned_cols=352 Identities=13% Similarity=0.020 Sum_probs=273.8
Q ss_pred HHHHHHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhh
Q 011416 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLS 107 (486)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~ 107 (486)
..+++..+...++...+.+..|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416 108 SFSPNYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (486)
Q Consensus 108 ~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~ 186 (486)
++++|++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+.++|..++|.+++.+.+..+||+.|++.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999988 77789999999999999999999999999999999999999888899999999888
Q ss_pred HHHHHHH-HhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCccc
Q 011416 187 PSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTE 265 (486)
Q Consensus 187 ~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (486)
+.++..+ ..+++||+++...+ + +
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~--~-~----------------------------------------------------- 186 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRPVDAP--R-T----------------------------------------------------- 186 (375)
T ss_dssp HHHHHHCCCCCSSCCCSTTTCC--C-C-----------------------------------------------------
T ss_pred HHHHHHHHHHHHCcccCCCCcc--c-c-----------------------------------------------------
Confidence 8777655 45566776532100 0 0
Q ss_pred CCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHH
Q 011416 266 GKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 345 (486)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 345 (486)
.....++++++++. ++......+......+....+.+.+. .+..|.++.+.+.......++.+++
T Consensus 187 --~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 187 --RLLTSYKTLFGNSG---FNCYLLMLIGGLAGIAAFEACSGVLM----------GAVLGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp --CTTTCSTHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCSCSS----------HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred --cHHHHHHHHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 00002333444333 33333333344444445555555333 2235678888899999999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHH-HHHHHH--HHhh--hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHh
Q 011416 346 LLLAAILVDTAGRKLSITIMFTL-SCLFLL--PLVT--YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 420 (486)
Q Consensus 346 ~~~~g~l~dr~g~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (486)
.++.+++.||++++.. .+... ...+.. .... ..+.+......++.+++.+...+....+..|..| ++|+++.
T Consensus 252 ~~~~~~l~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~ 328 (375)
T 2gfp_A 252 AWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAG 328 (375)
T ss_dssp HHHHHTTTTHHHHHHH--HHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHH
Confidence 9999999999887322 22222 222222 1111 2245555566777888888889999999999998 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 011416 421 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVL 453 (486)
Q Consensus 421 g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 453 (486)
|+.+...++|..++|.+.|.+.+..++...+..
T Consensus 329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999999999887666554444
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=100.00 E-value=1.9e-32 Score=260.77 Aligned_cols=382 Identities=13% Similarity=0.029 Sum_probs=248.2
Q ss_pred HHHHhhHhhhhchhch-hhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhh---hhcC
Q 011416 35 VAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLL---SSFS 110 (486)
Q Consensus 35 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~---~~~a 110 (486)
+..........+.+|. +++++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++... ..++
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666 45679999999999999999999999999999999999999999988877653221 1222
Q ss_pred CCHH-HHHHHHHHHHhccCcc-hhhhhhhccccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHH
Q 011416 111 PNYI-TLITLRCLVGVGLGSG-HVFLSWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 186 (486)
Q Consensus 111 ~~~~-~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~ 186 (486)
+... .+...+++.|++.+.. +...+.+.++.++ ++++...+....+.++|..++|.+++.+.+ .+||..|++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~ 175 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSG 175 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHH
Confidence 2111 1344566666655544 3333334344432 456777788888889999999999999876 589999998877
Q ss_pred HHHHHHHHhhccCCCchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhhhccccCCCCCCCCccchhhcccCCCCCcccC
Q 011416 187 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 266 (486)
Q Consensus 187 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (486)
+.++..+..++.+|+++. +.+.++ .++ ++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~---~~~~~~----------------------------~~~------------------~~~~ 206 (417)
T 2cfq_A 176 CALILAVLLFFAKTDAPS---SATVAN----------------------------AVG------------------ANHS 206 (417)
T ss_dssp TTTTHHHHSCSSCCCCSC---SSCSSS----------------------------SSS------------------SCCC
T ss_pred HHHHHHHHHHHcCccccc---cccccc----------------------------ccc------------------cccc
Confidence 755555555554443310 000000 000 0000
Q ss_pred CCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHH
Q 011416 267 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL 346 (486)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 346 (486)
+.....++++++++..+........ ....++....+.+.+.... .+..+.+....+.......++.+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 207 AFSLKLALELFRQPKLWFLSLYVIG---VSCTYDVFDQQFANFFTSF-------FATGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT-------SSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhcCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HhccCCChhHHHHHHHHHHHHHHHHH
Confidence 0111234455555443333222111 1112222222222221100 00011223445667777778889999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHH-HH
Q 011416 347 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA-NA 425 (486)
Q Consensus 347 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 425 (486)
++.+++.||+|||+.+..+..+.++..+.+...++.+...+..++.+++.+...+..+.+..|.+|++.|++++++. +.
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999999999999998888888777766665555555555555566666666677788999999999999999994 78
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccCCC
Q 011416 426 MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 476 (486)
Q Consensus 426 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (486)
..++|+.++|.+.|.+.+..|+...|.+.+++.+++.++.+...+|+++.+
T Consensus 357 ~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp THHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 888999999999999999888878888888888888777776666555444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=2.5e-31 Score=261.48 Aligned_cols=424 Identities=10% Similarity=0.020 Sum_probs=242.4
Q ss_pred HHHHHhhHhhhhchh-chhhhhcC------CCcchhHHHHHHHHHHHHHHHHHHhhhhhhh-cchHHHHHHHHHHHHhhh
Q 011416 34 WVAEAMEIMILSFVG-PTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRRMGFLGEALVTAGAGL 105 (486)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~ 105 (486)
.++.........+.+ +.+.+++| ++..+.|++.+++.++..++.+++|+++||+ |||+++..+.++.+++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344433333333334 45677899 9999999999999999999999999999999 999999999999999999
Q ss_pred hhhcCC-CHHHHHHHHHHHHhccCcc-hhhhhhhccccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 011416 106 LSSFSP-NYITLITLRCLVGVGLGSG-HVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWL 180 (486)
Q Consensus 106 ~~~~a~-~~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~l~~~l~~~~~w~~~ 180 (486)
++++++ |++.+++.|++.|++.+.. +...+++.|++|+++|+++.+. .+.+.++|.+++|.+++.+.+..+||+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 999999 9999999999999999988 7888999999999999876666 9999999999999999999988999999
Q ss_pred HHHhHHHHHHHHHHhhccCC-CchhhhhcCChHHHHHHHHHHHHhcCCCCCCchhh--hcc------ccCCCCCCCCc--
Q 011416 181 LGLSSIPSFILLAFLGFQPE-SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV--ARR------STLPTGERAPP-- 249 (486)
Q Consensus 181 f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~-- 249 (486)
|++.+++.++..+...+.++ .++....+++..+..+......+ .+....+... ... ...........
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALL--TKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIV 258 (524)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCCC----------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHh--hhhcccCccchhhhhhhhhhhhhhhcccchhhhh
Confidence 99988877665554443322 11100000000000000000000 0000000000 000 00000000000
Q ss_pred --------------cchhh--cccCCCCCcccCCCchhhhHhhhchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccc
Q 011416 250 --------------ELVHL--LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY-AVVLLISELSSL 312 (486)
Q Consensus 250 --------------~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 312 (486)
..... .++....... +...+.+........+.........+. ....+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 327 (524)
T 2xut_A 259 AGLCCAMVLVMGFVGAGASLQLERARKSHPD---------AAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAN-- 327 (524)
T ss_dssp HHHHHHHHHHHHHHHTGGGTHHHHSCCSCCS---------SSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHH--
T ss_pred hhhhhhhhhhhcccccchhhHHhhhhccccH---------hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHH--
Confidence 00000 0000000000 000001111111111111000000000 0000100000
Q ss_pred cccCCCCccccCCCCC-chhHHHHHHHHhhHHHHHHHHHHHH----HHhch----hHHHHHHHHHHHHHHHHHhhh----
Q 011416 313 DTRCRSPLMFSHHPQD-ANLYIDEFITSLAEIPGLLLAAILV----DTAGR----KLSITIMFTLSCLFLLPLVTY---- 379 (486)
Q Consensus 313 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~g~l~----dr~g~----~~~~~~~~~~~~~~~~~~~~~---- 379 (486)
..+.+. ...+.......++.+++..+.+++. ||.++ ++.+.++.++.+++++++...
T Consensus 328 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 397 (524)
T 2xut_A 328 ----------DMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM 397 (524)
T ss_dssp ----------HSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT
T ss_pred ----------hcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001111 1344444444455555555555443 44432 345666777777777666542
Q ss_pred -----chhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 011416 380 -----QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--------- 445 (486)
Q Consensus 380 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~--------- 445 (486)
.+.+......++.+++.+...+..+.+..|..|++.|++++|+.+...++|+.++|.+.|.+.+..
T Consensus 398 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 398 DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 245556667778888888889999999999999999999999999999999999999999887632
Q ss_pred -cc-chHHHHHHHHHHHHHHHHhcccccccCCCcccc
Q 011416 446 -HQ-MTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 480 (486)
Q Consensus 446 -g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (486)
+. ...+++.+++++++.++.+++.++.++++.++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 11 222666777777777766666655555444333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=1.5e-15 Score=145.98 Aligned_cols=180 Identities=12% Similarity=0.002 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHH
Q 011416 282 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS 361 (486)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 361 (486)
++.+...+...+.............+.+. ++. .+..+.++..+...++..++.++.|+++||+|||++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 94 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-----------EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 94 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-----------SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH
Confidence 34444444445555555555555566444 456 888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHH
Q 011416 362 ITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 437 (486)
Q Consensus 362 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i 437 (486)
+.++.++.+++.++..+ .++.+...+..++.|++.+...+...+++.|.+|+++|++++|+.+....+|..++|.+
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888 78888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-cchHHHHHHHHHHHHHHHHhccccccc
Q 011416 438 AVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETK 473 (486)
Q Consensus 438 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (486)
.+.+.+..+ |...+++.+++.++..++.++..+|++
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 999999898 999999988888777766655555543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.64 E-value=1.4e-14 Score=138.76 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHH
Q 011416 283 RTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 362 (486)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~ 362 (486)
+.....+...+...+.........+.+. ++++.+..+.++..+...++..++.++.|+++||+|||+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQ-----------QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 4444445555555555555555566544 45689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---hhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHH
Q 011416 363 TIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 439 (486)
Q Consensus 363 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g 439 (486)
..+.++.+++.++. ...++.+...+..++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 95 ITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888 667788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHH-Hhhc-------------------------cchHHHHHHHHHHHHHHHHhc
Q 011416 440 ALV-ANCH-------------------------QMTAVVLLVVVIVTSILSVML 467 (486)
Q Consensus 440 ~l~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~~ 467 (486)
.+. +..+ |...+++.+++.++..++.+.
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 988 4443 566776666666555544443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.59 E-value=5.5e-14 Score=136.68 Aligned_cols=179 Identities=13% Similarity=0.009 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHH-hchhHHHH
Q 011416 285 TILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSIT 363 (486)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~~~ 363 (486)
.+..+...+...+.++....+.+.+..... ..++.|.+..+.++..+...++..++.++.|+++|| +|||+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 344444555555566655555554431100 012268999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhhhHhhhccccccccc--hhhHhHHHHHHHHHHHHHHHHHHHHH
Q 011416 364 IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV--RSTGAGAANAMGRIGGMVCPLVAVAL 441 (486)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~~~~i~g~l 441 (486)
.+.++.+++.++....++.+...+..++.|++.+...+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 169 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA 169 (491)
T ss_dssp HHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888888888899999999999999999999999988 77888889999999999999999999
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHhcc
Q 011416 442 VANCHQMTAVVLLVVVIVTSILSVMLI 468 (486)
Q Consensus 442 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 468 (486)
.+..||...+++.++..+++.+..+..
T Consensus 170 ~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 170 QEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988877777666655544
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.55 E-value=2.6e-14 Score=133.75 Aligned_cols=153 Identities=14% Similarity=0.029 Sum_probs=136.9
Q ss_pred ccCCCCCchhHHHHHHHHhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhhhhhhh
Q 011416 322 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT 401 (486)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (486)
++.|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.....++.+...+..++.|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 56689999999999999999999999999999999999999999999999988888888888888888889999999999
Q ss_pred hHhhhccccccccchhhHhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcccccccC
Q 011416 402 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 474 (486)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (486)
...+++.|..|+++|++++++.+....+|..++|.+.+.+.+..+|...+.+.+++.++..+......||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 9999999999999999999999999999999999999999888889888888888877777655555555543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.51 E-value=1.1e-13 Score=131.46 Aligned_cols=146 Identities=9% Similarity=-0.017 Sum_probs=122.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHhccCcc-hhhhhh
Q 011416 58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFSPNYITLITLRCLVGVGLGSG-HVFLSW 136 (486)
Q Consensus 58 s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~-~~~~~~ 136 (486)
+..+.+++.++..++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+.. +....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556688888888899999999999999999999999999888888888888889888888888888876655 556678
Q ss_pred hccccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHH-hhccCCCch
Q 011416 137 FLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 203 (486)
Q Consensus 137 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~-~~~~~e~~~ 203 (486)
+.|.+|++.|+++.++ ++....+|..++|.+++.+.+..|++..|.+.+++.++..+. +...||+++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999998 478888999999999999988889999999888887776554 444565443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.50 E-value=3.6e-13 Score=132.07 Aligned_cols=172 Identities=14% Similarity=0.034 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCccccCC------CCCchhHHHHHHHHhhHHHHHHHHHHHHHHh-chhH
Q 011416 288 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH------PQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKL 360 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~~~ 360 (486)
.+...+...+.++....+.+.+.. ++.+ .++.+.++......++..++.++.|+++||+ |||+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~----------~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLM----------TALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444444455555555555554331 2345 8899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHhhhhhhhhHhhhccccccccchhhHhHH---HHHHHHHHHHHHHH
Q 011416 361 SITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA---ANAMGRIGGMVCPL 436 (486)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~g~~~~~~ 436 (486)
.+.++.++.+++.++....+ +.+...+..++.|++.+...+...+++.|.+|+++|+++.+. .+...++|..++|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~ 166 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL 166 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888777 777788888889999999999999999999999999776666 88889999999999
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHhccc
Q 011416 437 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 469 (486)
Q Consensus 437 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 469 (486)
+.+.+.+..+|...|.+.+++.+++.+..+...
T Consensus 167 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp TSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988999888888877776666555443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.29 E-value=1.5e-11 Score=119.42 Aligned_cols=171 Identities=15% Similarity=0.058 Sum_probs=124.9
Q ss_pred HHHHHHHhhHhhhhchhchhhhhcCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhhhhcC-
Q 011416 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRRMGFLGEALVTAGAGLLSSFS- 110 (486)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~a- 110 (486)
...+........+....|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+....+++.+..+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 3334444444555566778888888888888888888889999999999999999999999999888887776655432
Q ss_pred ---CCHHHHH--HHHHHHHhccCcchhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCcHH
Q 011416 111 ---PNYITLI--TLRCLVGVGLGSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP------RLDWRW 179 (486)
Q Consensus 111 ---~~~~~l~--~~r~l~G~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~~------~~~w~~ 179 (486)
.+.+..+ +.-+..+++.+..+....+.+|.+|.+.|++++|+......+|..+++.+...+.+ ..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 1222222 22233344444446677889999999999999999999999999888877655432 345667
Q ss_pred HHHHhHHHHHHHH-HHhhccCCCc
Q 011416 180 LLGLSSIPSFILL-AFLGFQPESP 202 (486)
Q Consensus 180 ~f~~~~~~~~~~~-~~~~~~~e~~ 202 (486)
.|++.++++++.. +.++++||+.
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHheecCCC
Confidence 7888888777764 4577889984
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.04 E-value=2.5 Score=19.82 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=11.5
Q ss_pred HHhhhhhhhcchHH
Q 011416 79 AWGLVADNYGRRMG 92 (486)
Q Consensus 79 ~~g~l~dr~G~r~~ 92 (486)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=22.09 E-value=3.2e+02 Score=24.92 Aligned_cols=13 Identities=0% Similarity=-0.299 Sum_probs=5.8
Q ss_pred HHHHHHhhhhhhh
Q 011416 75 VGAYAWGLVADNY 87 (486)
Q Consensus 75 i~~~~~g~l~dr~ 87 (486)
........++.++
T Consensus 55 ~~a~~~~el~~~~ 67 (445)
T 3l1l_A 55 GLSMVYAKMSFLD 67 (445)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHccC
Confidence 3334444444444
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.52 E-value=1.8e+02 Score=18.97 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=17.4
Q ss_pred HHhhccchHHHHHHHHHHHHHHHHhcccccccCC
Q 011416 442 VANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 475 (486)
Q Consensus 442 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (486)
....|+...+++...+.+++.-.+-.+.||+.+.
T Consensus 27 lkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 27 MKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3334455555555555555555555556665543
Done!