Query 011417
Match_columns 486
No_of_seqs 479 out of 4325
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 3.6E-84 7.9E-89 570.1 18.8 285 178-470 3-288 (303)
2 KOG0376 Serine-threonine phosp 100.0 4.4E-78 9.5E-83 585.5 24.8 470 14-484 4-475 (476)
3 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.3E-76 2.9E-81 572.2 30.6 314 164-479 2-316 (316)
4 KOG0373 Serine/threonine speci 100.0 3.8E-77 8.3E-82 516.9 18.1 287 177-471 5-293 (306)
5 cd07420 MPP_RdgC Drosophila me 100.0 1E-73 2.2E-78 550.0 29.4 289 173-465 2-321 (321)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 4.9E-71 1.1E-75 527.4 28.3 283 178-468 2-285 (285)
7 PTZ00480 serine/threonine-prot 100.0 1.8E-70 3.8E-75 526.6 29.1 272 190-469 31-303 (320)
8 KOG0375 Serine-threonine phosp 100.0 1.7E-72 3.7E-77 520.0 14.1 294 178-485 48-355 (517)
9 PTZ00239 serine/threonine prot 100.0 2.8E-70 6.2E-75 524.5 28.4 285 178-470 3-289 (303)
10 cd07416 MPP_PP2B PP2B, metallo 100.0 5.9E-70 1.3E-74 525.6 29.6 288 178-474 3-304 (305)
11 cd07418 MPP_PP7 PP7, metalloph 100.0 4.6E-69 1E-73 524.4 30.7 302 173-475 7-375 (377)
12 KOG0374 Serine/threonine speci 100.0 1E-69 2.2E-74 522.9 23.7 269 191-467 32-303 (331)
13 PTZ00244 serine/threonine-prot 100.0 4.5E-69 9.7E-74 514.8 27.4 269 190-466 24-293 (294)
14 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 4.9E-69 1.1E-73 515.6 27.4 269 190-466 22-291 (293)
15 smart00156 PP2Ac Protein phosp 100.0 1.1E-67 2.3E-72 503.3 27.4 267 192-466 2-269 (271)
16 KOG0371 Serine/threonine prote 100.0 2.9E-67 6.2E-72 466.1 12.5 287 176-470 18-305 (319)
17 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1.2E-64 2.6E-69 491.2 27.1 269 190-465 20-310 (311)
18 KOG0377 Protein serine/threoni 100.0 1.1E-65 2.5E-70 485.7 13.7 315 155-474 99-439 (631)
19 cd00144 MPP_PPP_family phospho 100.0 8.9E-33 1.9E-37 259.8 21.1 213 225-451 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 2.8E-24 6.1E-29 197.9 15.0 176 225-436 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 8E-23 1.7E-27 193.4 16.4 196 223-452 2-222 (245)
22 PRK00166 apaH diadenosine tetr 99.9 4.3E-21 9.4E-26 182.8 16.1 214 223-452 2-258 (275)
23 cd07422 MPP_ApaH Escherichia c 99.9 7E-22 1.5E-26 186.2 9.6 147 224-376 1-158 (257)
24 cd07413 MPP_PA3087 Pseudomonas 99.9 5.9E-21 1.3E-25 177.8 14.4 116 224-342 1-142 (222)
25 cd07423 MPP_PrpE Bacillus subt 99.9 1.4E-20 3.1E-25 177.2 16.5 118 223-343 2-140 (234)
26 TIGR00668 apaH bis(5'-nucleosy 99.8 5.4E-21 1.2E-25 179.8 10.4 126 223-354 2-133 (279)
27 PRK11439 pphA serine/threonine 99.8 1.9E-20 4.2E-25 174.2 14.0 185 215-439 10-208 (218)
28 cd07424 MPP_PrpA_PrpB PrpA and 99.8 4.4E-20 9.6E-25 170.7 15.9 168 223-422 2-183 (207)
29 cd07421 MPP_Rhilphs Rhilph pho 99.8 4.2E-19 9.2E-24 166.8 15.1 75 223-297 3-83 (304)
30 PHA02239 putative protein phos 99.8 2.6E-19 5.7E-24 167.2 12.0 174 223-439 2-221 (235)
31 PRK09968 serine/threonine-spec 99.8 1.9E-18 4.1E-23 160.5 13.5 123 215-343 8-144 (218)
32 KOG4626 O-linked N-acetylgluco 99.8 8.2E-19 1.8E-23 174.7 6.6 197 9-219 247-461 (966)
33 KOG0553 TPR repeat-containing 99.7 7.3E-17 1.6E-21 149.7 14.1 123 9-131 76-198 (304)
34 KOG4626 O-linked N-acetylgluco 99.7 1E-16 2.3E-21 159.9 8.4 170 8-191 280-451 (966)
35 PRK15359 type III secretion sy 99.7 3.8E-15 8.3E-20 129.4 16.3 115 16-130 26-140 (144)
36 KOG1126 DNA-binding cell divis 99.7 1.3E-16 2.9E-21 161.3 7.1 151 6-170 413-563 (638)
37 COG3063 PilF Tfp pilus assembl 99.5 2.6E-13 5.7E-18 121.5 16.1 147 9-170 30-179 (250)
38 TIGR00990 3a0801s09 mitochondr 99.5 6E-14 1.3E-18 151.3 14.6 131 10-142 327-457 (615)
39 TIGR00990 3a0801s09 mitochondr 99.5 2.1E-13 4.5E-18 147.1 18.1 142 10-165 361-502 (615)
40 PRK15363 pathogenicity island 99.5 5.4E-13 1.2E-17 114.3 16.4 107 11-117 32-138 (157)
41 TIGR02552 LcrH_SycD type III s 99.5 6.8E-13 1.5E-17 113.9 16.5 120 7-126 10-129 (135)
42 PLN03088 SGT1, suppressor of 99.5 4.8E-13 1E-17 133.8 17.2 116 16-131 4-119 (356)
43 PRK11189 lipoprotein NlpI; Pro 99.5 1E-12 2.3E-17 128.4 16.8 131 9-142 59-189 (296)
44 PRK15359 type III secretion sy 99.5 2.3E-13 5.1E-18 118.1 9.2 116 34-166 13-128 (144)
45 PRK10370 formate-dependent nit 99.5 1.8E-12 3.9E-17 118.7 15.4 108 10-117 69-179 (198)
46 KOG0548 Molecular co-chaperone 99.4 1.4E-12 3.1E-17 129.4 14.2 120 10-129 354-473 (539)
47 PRK10370 formate-dependent nit 99.4 1.6E-12 3.5E-17 119.0 13.5 122 27-162 52-176 (198)
48 KOG1155 Anaphase-promoting com 99.4 1.9E-12 4.2E-17 126.1 14.3 130 11-142 361-490 (559)
49 KOG1155 Anaphase-promoting com 99.4 8.9E-13 1.9E-17 128.4 10.5 127 14-142 330-456 (559)
50 PRK09782 bacteriophage N4 rece 99.4 4.2E-12 9E-17 141.0 17.0 165 14-193 576-742 (987)
51 PRK12370 invasion protein regu 99.4 3.5E-12 7.7E-17 135.5 15.6 132 9-142 333-465 (553)
52 PRK12370 invasion protein regu 99.4 2.8E-12 6E-17 136.3 14.4 133 8-142 289-430 (553)
53 KOG0547 Translocase of outer m 99.4 4.1E-12 8.8E-17 124.6 13.9 134 16-163 362-495 (606)
54 KOG0547 Translocase of outer m 99.4 1.2E-12 2.6E-17 128.2 9.9 173 8-193 388-568 (606)
55 TIGR02521 type_IV_pilW type IV 99.4 1.5E-11 3.2E-16 114.6 16.4 134 7-142 24-159 (234)
56 KOG1126 DNA-binding cell divis 99.4 3.6E-12 7.8E-17 129.5 12.5 131 10-142 485-615 (638)
57 PRK15179 Vi polysaccharide bio 99.4 6.3E-12 1.4E-16 134.5 14.7 132 9-142 81-212 (694)
58 KOG1125 TPR repeat-containing 99.4 1.1E-11 2.5E-16 124.1 15.3 165 7-185 312-521 (579)
59 COG3063 PilF Tfp pilus assembl 99.3 1E-11 2.2E-16 111.4 12.3 133 8-142 63-197 (250)
60 KOG0624 dsRNA-activated protei 99.3 3.8E-12 8.3E-17 119.7 9.8 155 7-163 31-188 (504)
61 PRK15174 Vi polysaccharide exp 99.3 1.8E-11 3.9E-16 132.3 16.3 125 16-142 214-342 (656)
62 TIGR02521 type_IV_pilW type IV 99.3 2.9E-11 6.4E-16 112.5 15.6 131 10-142 61-193 (234)
63 TIGR03302 OM_YfiO outer membra 99.3 1.9E-11 4.2E-16 115.4 14.1 155 8-162 27-198 (235)
64 PRK15174 Vi polysaccharide exp 99.3 1.2E-11 2.7E-16 133.6 14.5 117 24-142 187-308 (656)
65 TIGR02552 LcrH_SycD type III s 99.3 1.5E-11 3.3E-16 105.5 11.0 115 35-163 4-118 (135)
66 KOG0543 FKBP-type peptidyl-pro 99.3 7.8E-11 1.7E-15 114.3 16.0 122 11-132 205-341 (397)
67 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 3.9E-16 118.9 11.4 131 10-142 142-272 (280)
68 PRK09782 bacteriophage N4 rece 99.3 6.1E-11 1.3E-15 131.8 16.4 130 10-142 606-735 (987)
69 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.4E-10 3.1E-15 96.7 14.7 106 14-119 2-113 (119)
70 KOG1125 TPR repeat-containing 99.3 2.5E-11 5.4E-16 121.6 10.4 121 12-132 428-558 (579)
71 PRK02603 photosystem I assembl 99.3 2.3E-10 4.9E-15 102.7 15.7 111 5-115 26-153 (172)
72 PLN02789 farnesyltranstransfer 99.2 1.5E-10 3.3E-15 113.4 15.1 121 9-129 66-189 (320)
73 KOG4234 TPR repeat-containing 99.2 1.7E-10 3.6E-15 101.1 13.4 120 11-130 92-216 (271)
74 PRK11447 cellulose synthase su 99.2 4.6E-11 1E-15 137.5 12.9 154 10-166 299-497 (1157)
75 PRK11189 lipoprotein NlpI; Pro 99.2 1.1E-10 2.3E-15 114.2 13.1 123 27-163 39-165 (296)
76 cd00189 TPR Tetratricopeptide 99.2 2.2E-10 4.8E-15 89.9 12.2 99 16-114 2-100 (100)
77 PRK11447 cellulose synthase su 99.2 3.3E-11 7.2E-16 138.7 10.2 133 19-165 274-420 (1157)
78 KOG0548 Molecular co-chaperone 99.2 1.1E-10 2.4E-15 116.2 11.7 112 15-126 3-114 (539)
79 PF13414 TPR_11: TPR repeat; P 99.2 6.4E-11 1.4E-15 89.0 7.8 66 14-79 3-69 (69)
80 TIGR03302 OM_YfiO outer membra 99.2 4.1E-10 8.8E-15 106.4 15.1 131 10-142 66-227 (235)
81 PRK15331 chaperone protein Sic 99.2 6.8E-10 1.5E-14 95.7 14.7 111 9-120 32-142 (165)
82 PF13414 TPR_11: TPR repeat; P 99.2 9.9E-11 2.2E-15 87.9 8.4 68 46-113 1-69 (69)
83 PLN02789 farnesyltranstransfer 99.2 4.6E-10 1E-14 110.0 15.3 144 10-167 33-179 (320)
84 KOG2076 RNA polymerase III tra 99.2 1.7E-09 3.6E-14 113.6 19.9 136 12-161 137-272 (895)
85 KOG4648 Uncharacterized conser 99.2 1.6E-10 3.5E-15 108.9 10.0 114 14-127 97-210 (536)
86 COG5010 TadD Flp pilus assembl 99.2 1.2E-09 2.6E-14 100.2 15.3 131 9-141 95-225 (257)
87 TIGR02917 PEP_TPR_lipo putativ 99.1 6.3E-10 1.4E-14 124.5 16.5 133 8-142 119-251 (899)
88 KOG0553 TPR repeat-containing 99.1 1.5E-10 3.3E-15 108.0 9.4 102 49-164 82-183 (304)
89 PRK15363 pathogenicity island 99.1 3.8E-10 8.2E-15 96.9 10.4 101 40-142 26-127 (157)
90 PRK10049 pgaA outer membrane p 99.1 1.1E-09 2.4E-14 120.9 16.3 130 10-142 45-174 (765)
91 PRK11788 tetratricopeptide rep 99.1 1.6E-09 3.5E-14 110.1 16.5 115 13-127 140-260 (389)
92 PRK11788 tetratricopeptide rep 99.1 1.2E-09 2.5E-14 111.2 15.2 128 13-142 106-238 (389)
93 TIGR02917 PEP_TPR_lipo putativ 99.1 8.7E-10 1.9E-14 123.4 15.5 130 10-142 766-895 (899)
94 KOG0550 Molecular chaperone (D 99.1 1.9E-10 4.1E-15 111.0 8.5 132 9-142 198-345 (486)
95 CHL00033 ycf3 photosystem I as 99.1 1.8E-09 3.9E-14 96.4 14.5 109 8-116 29-154 (168)
96 PF12895 Apc3: Anaphase-promot 99.1 3E-10 6.6E-15 88.9 7.3 82 26-108 1-84 (84)
97 PF00149 Metallophos: Calcineu 99.1 6.8E-10 1.5E-14 98.7 10.4 158 223-417 2-198 (200)
98 COG4783 Putative Zn-dependent 99.1 2.2E-09 4.7E-14 106.3 13.7 122 11-132 303-424 (484)
99 COG4235 Cytochrome c biogenesi 99.1 3.8E-09 8.2E-14 99.4 14.6 115 8-122 150-267 (287)
100 KOG0550 Molecular chaperone (D 99.1 1.2E-09 2.6E-14 105.6 11.3 120 10-130 245-368 (486)
101 KOG0624 dsRNA-activated protei 99.0 9.6E-09 2.1E-13 97.1 16.1 192 16-209 157-354 (504)
102 KOG1173 Anaphase-promoting com 99.0 1.5E-09 3.3E-14 108.6 11.3 132 18-163 384-522 (611)
103 COG5010 TadD Flp pilus assembl 99.0 3.3E-09 7.1E-14 97.4 12.6 131 9-142 62-192 (257)
104 KOG2003 TPR repeat-containing 99.0 1.1E-09 2.4E-14 106.6 9.7 172 12-197 488-661 (840)
105 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.5E-14 81.0 7.5 62 20-81 3-64 (65)
106 COG0639 ApaH Diadenosine tetra 99.0 3.7E-10 7.9E-15 98.5 5.6 143 295-440 2-154 (155)
107 PF13432 TPR_16: Tetratricopep 99.0 1.3E-09 2.7E-14 80.8 7.6 65 52-116 1-65 (65)
108 PF13429 TPR_15: Tetratricopep 99.0 1.5E-09 3.2E-14 105.4 9.9 129 12-142 108-238 (280)
109 PRK10803 tol-pal system protei 99.0 1.5E-08 3.2E-13 96.5 16.4 106 14-119 142-254 (263)
110 PRK15179 Vi polysaccharide bio 99.0 6.5E-09 1.4E-13 111.6 15.2 110 9-118 115-224 (694)
111 PRK10049 pgaA outer membrane p 99.0 8.9E-09 1.9E-13 113.7 15.7 131 9-142 10-140 (765)
112 PRK14574 hmsH outer membrane p 99.0 7.9E-09 1.7E-13 113.0 14.8 132 9-142 29-160 (822)
113 KOG1173 Anaphase-promoting com 99.0 1.4E-09 3E-14 109.0 7.7 118 9-126 307-424 (611)
114 KOG2002 TPR-containing nuclear 98.9 4.8E-09 1E-13 110.9 11.4 156 8-163 158-340 (1018)
115 PRK10866 outer membrane biogen 98.9 2.4E-08 5.3E-13 94.3 15.2 151 12-162 30-207 (243)
116 cd00841 MPP_YfcE Escherichia c 98.9 3.5E-08 7.5E-13 86.8 14.8 81 224-342 2-85 (155)
117 PF13525 YfiO: Outer membrane 98.9 2.8E-08 6E-13 91.6 14.4 151 12-162 3-173 (203)
118 KOG3060 Uncharacterized conser 98.9 4.6E-08 9.9E-13 89.2 15.0 145 11-167 83-228 (289)
119 PRK10153 DNA-binding transcrip 98.9 3.4E-08 7.3E-13 103.1 15.5 141 13-168 338-491 (517)
120 KOG4555 TPR repeat-containing 98.9 1.6E-07 3.4E-12 77.0 15.3 107 11-117 40-150 (175)
121 PRK14720 transcript cleavage f 98.9 3.3E-08 7.1E-13 107.2 14.8 133 5-142 22-173 (906)
122 PLN03088 SGT1, suppressor of 98.9 1.5E-08 3.2E-13 101.6 11.3 100 51-164 5-104 (356)
123 CHL00033 ycf3 photosystem I as 98.9 8E-09 1.7E-13 92.2 8.5 109 22-130 7-120 (168)
124 KOG1840 Kinesin light chain [C 98.8 5.5E-08 1.2E-12 100.0 14.7 186 6-210 191-400 (508)
125 KOG4162 Predicted calmodulin-b 98.8 2.4E-08 5.2E-13 103.5 11.8 128 14-143 650-779 (799)
126 KOG1840 Kinesin light chain [C 98.8 3.7E-08 8.1E-13 101.2 13.2 212 9-243 236-475 (508)
127 PF12688 TPR_5: Tetratrico pep 98.8 9.4E-08 2E-12 79.5 13.1 96 15-110 2-103 (120)
128 cd00189 TPR Tetratricopeptide 98.8 3.8E-08 8.2E-13 76.9 10.4 91 50-142 2-92 (100)
129 COG4783 Putative Zn-dependent 98.8 1.1E-07 2.5E-12 94.3 15.0 124 8-131 334-457 (484)
130 KOG4162 Predicted calmodulin-b 98.8 5E-08 1.1E-12 101.2 13.0 110 8-117 678-789 (799)
131 PRK02603 photosystem I assembl 98.8 1.4E-08 3.1E-13 91.0 7.8 87 45-131 32-121 (172)
132 KOG0545 Aryl-hydrocarbon recep 98.8 1.3E-07 2.7E-12 85.8 13.5 108 12-119 176-301 (329)
133 COG2956 Predicted N-acetylgluc 98.8 7.9E-08 1.7E-12 90.5 12.3 143 9-165 102-249 (389)
134 KOG1128 Uncharacterized conser 98.8 2.2E-08 4.7E-13 103.2 9.4 128 13-142 484-611 (777)
135 KOG4642 Chaperone-dependent E3 98.8 1.9E-08 4.1E-13 90.8 7.7 101 12-112 8-108 (284)
136 TIGR00040 yfcE phosphoesterase 98.8 2.5E-07 5.3E-12 81.7 15.0 62 223-293 2-63 (158)
137 PRK11906 transcriptional regul 98.8 1E-07 2.2E-12 95.1 13.7 137 16-166 257-408 (458)
138 COG4235 Cytochrome c biogenesi 98.8 9.5E-08 2.1E-12 90.0 12.8 112 29-142 137-251 (287)
139 PF13371 TPR_9: Tetratricopept 98.8 4.5E-08 9.7E-13 74.2 8.7 66 55-120 2-67 (73)
140 PF14559 TPR_19: Tetratricopep 98.8 2.5E-08 5.4E-13 74.5 7.0 65 25-89 2-66 (68)
141 PF13512 TPR_18: Tetratricopep 98.8 3.4E-07 7.4E-12 77.4 14.4 107 13-119 9-136 (142)
142 KOG2002 TPR-containing nuclear 98.8 9.1E-08 2E-12 101.5 13.4 122 10-131 303-429 (1018)
143 PF13371 TPR_9: Tetratricopept 98.7 6.4E-08 1.4E-12 73.3 8.7 70 21-90 2-71 (73)
144 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.4E-08 1.4E-12 96.4 10.5 73 5-77 66-141 (453)
145 PF12850 Metallophos_2: Calcin 98.7 1.9E-07 4.1E-12 82.0 12.5 149 223-452 2-151 (156)
146 PF14559 TPR_19: Tetratricopep 98.7 3.7E-08 8E-13 73.5 6.8 67 58-124 1-67 (68)
147 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.2E-07 2.7E-12 78.7 10.6 93 48-142 2-100 (119)
148 KOG3060 Uncharacterized conser 98.7 4.5E-07 9.6E-12 82.9 14.7 123 8-130 114-239 (289)
149 PF09976 TPR_21: Tetratricopep 98.7 2.2E-07 4.8E-12 80.7 12.3 128 12-142 9-142 (145)
150 KOG0551 Hsp90 co-chaperone CNS 98.7 1.2E-07 2.6E-12 89.5 11.2 113 6-118 73-189 (390)
151 KOG2076 RNA polymerase III tra 98.7 2.1E-07 4.7E-12 98.1 14.2 110 4-113 163-272 (895)
152 PF09976 TPR_21: Tetratricopep 98.7 5.6E-07 1.2E-11 78.2 14.8 98 11-109 45-145 (145)
153 KOG2003 TPR repeat-containing 98.7 1.8E-07 4E-12 91.4 12.6 134 7-142 517-650 (840)
154 cd05804 StaR_like StaR_like; a 98.7 2.2E-07 4.8E-12 93.3 13.6 128 12-142 41-172 (355)
155 COG4785 NlpI Lipoprotein NlpI, 98.7 1.6E-07 3.5E-12 83.7 10.5 117 7-123 58-174 (297)
156 KOG1129 TPR repeat-containing 98.7 5.3E-08 1.1E-12 91.7 7.6 131 10-142 252-382 (478)
157 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1E-07 2.2E-12 95.0 10.1 69 43-111 70-141 (453)
158 KOG1174 Anaphase-promoting com 98.7 2.3E-07 5E-12 89.9 11.9 141 8-163 328-504 (564)
159 PRK14574 hmsH outer membrane p 98.7 2.2E-07 4.8E-12 101.8 13.4 111 19-130 107-217 (822)
160 COG1729 Uncharacterized protei 98.7 1.1E-06 2.3E-11 82.0 15.8 107 15-121 142-254 (262)
161 COG2956 Predicted N-acetylgluc 98.7 4.5E-07 9.8E-12 85.5 13.2 129 12-142 139-273 (389)
162 PRK11906 transcriptional regul 98.6 5.8E-07 1.3E-11 89.8 14.7 112 8-119 289-409 (458)
163 KOG1129 TPR repeat-containing 98.6 2.6E-07 5.6E-12 87.1 11.0 233 18-282 227-461 (478)
164 KOG1156 N-terminal acetyltrans 98.6 3.8E-07 8.2E-12 93.1 12.3 122 11-132 4-125 (700)
165 cd05804 StaR_like StaR_like; a 98.6 4E-07 8.7E-12 91.4 12.7 101 12-112 112-216 (355)
166 TIGR00540 hemY_coli hemY prote 98.6 5.5E-07 1.2E-11 92.3 13.4 128 12-142 261-394 (409)
167 PF06552 TOM20_plant: Plant sp 98.6 6.9E-07 1.5E-11 78.0 11.8 96 30-125 7-123 (186)
168 PRK10747 putative protoheme IX 98.6 1.3E-06 2.8E-11 89.2 15.7 128 12-142 82-211 (398)
169 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-06 2.5E-11 88.0 14.8 117 22-143 177-293 (395)
170 PRK09453 phosphodiesterase; Pr 98.6 2.2E-07 4.8E-12 84.1 8.8 68 223-295 2-77 (182)
171 TIGR00540 hemY_coli hemY prote 98.6 2.2E-06 4.9E-11 87.8 17.2 128 13-142 83-211 (409)
172 KOG0543 FKBP-type peptidyl-pro 98.6 6.2E-07 1.3E-11 87.5 12.0 100 14-113 257-357 (397)
173 KOG1174 Anaphase-promoting com 98.6 1.5E-06 3.2E-11 84.5 14.4 131 10-142 228-392 (564)
174 PF12895 Apc3: Anaphase-promot 98.6 7.7E-08 1.7E-12 75.2 4.5 80 60-142 1-82 (84)
175 cd07379 MPP_239FB Homo sapiens 98.5 1.1E-06 2.3E-11 75.4 11.6 117 224-423 2-120 (135)
176 cd07397 MPP_DevT Myxococcus xa 98.5 1.2E-06 2.6E-11 81.5 12.1 109 223-342 2-157 (238)
177 PRK15331 chaperone protein Sic 98.5 4.3E-07 9.3E-12 78.5 8.3 101 40-142 29-129 (165)
178 PRK10747 putative protoheme IX 98.5 1.4E-06 3E-11 88.9 13.4 127 10-142 259-385 (398)
179 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.2E-12 72.3 4.7 63 48-110 5-74 (78)
180 PF13424 TPR_12: Tetratricopep 98.5 3.7E-07 8.1E-12 70.1 6.9 68 10-77 1-75 (78)
181 PRK10153 DNA-binding transcrip 98.5 1.5E-06 3.2E-11 90.9 13.4 109 8-117 370-488 (517)
182 KOG1156 N-terminal acetyltrans 98.4 1.4E-06 3E-11 89.1 10.6 132 9-142 36-167 (700)
183 KOG1128 Uncharacterized conser 98.4 2.2E-06 4.9E-11 88.7 12.1 127 13-142 423-577 (777)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.4E-06 5.2E-11 85.7 11.9 95 15-109 201-295 (395)
185 KOG1127 TPR repeat-containing 98.4 1.7E-06 3.7E-11 92.1 11.1 132 9-142 487-654 (1238)
186 PRK10803 tol-pal system protei 98.4 2.8E-06 6.1E-11 81.0 11.4 102 48-163 142-250 (263)
187 cd07394 MPP_Vps29 Homo sapiens 98.4 2.4E-05 5.2E-10 70.3 16.3 108 224-419 2-118 (178)
188 KOG3785 Uncharacterized conser 98.4 1.4E-06 3.1E-11 83.0 8.5 130 11-142 54-209 (557)
189 PF12688 TPR_5: Tetratrico pep 98.3 5.3E-06 1.1E-10 69.0 10.5 92 49-142 2-99 (120)
190 cd00838 MPP_superfamily metall 98.3 6.2E-06 1.4E-10 69.3 11.0 117 225-423 1-119 (131)
191 cd07388 MPP_Tt1561 Thermus the 98.3 1.7E-05 3.7E-10 73.6 14.6 71 222-294 5-75 (224)
192 PRK14720 transcript cleavage f 98.3 1.3E-05 2.7E-10 87.5 14.5 119 10-129 112-270 (906)
193 PF12569 NARP1: NMDA receptor- 98.3 2.2E-05 4.8E-10 81.7 15.7 129 14-142 194-329 (517)
194 KOG0495 HAT repeat protein [RN 98.3 8.4E-06 1.8E-10 83.5 11.9 126 15-142 652-777 (913)
195 KOG1127 TPR repeat-containing 98.3 1.3E-06 2.9E-11 92.9 6.2 117 14-130 562-678 (1238)
196 PF08321 PPP5: PPP5 TPR repeat 98.3 2.6E-06 5.6E-11 67.3 6.4 94 122-216 2-95 (95)
197 COG4700 Uncharacterized protei 98.2 4E-05 8.6E-10 67.1 14.0 119 12-131 87-208 (251)
198 PF13525 YfiO: Outer membrane 98.2 5.8E-05 1.3E-09 69.5 15.7 124 9-132 37-194 (203)
199 PF12569 NARP1: NMDA receptor- 98.2 3.3E-05 7E-10 80.5 15.5 133 8-142 32-252 (517)
200 COG4105 ComL DNA uptake lipopr 98.2 4.7E-05 1E-09 70.6 14.5 150 13-162 33-199 (254)
201 cd07404 MPP_MS158 Microscilla 98.2 8E-06 1.7E-10 72.6 9.3 68 224-294 1-68 (166)
202 PRK10866 outer membrane biogen 98.2 0.00011 2.3E-09 69.6 17.1 123 10-132 65-228 (243)
203 KOG0495 HAT repeat protein [RN 98.2 1.6E-05 3.5E-10 81.5 11.6 124 16-142 620-743 (913)
204 KOG0376 Serine-threonine phosp 98.2 1.2E-07 2.6E-12 94.2 -3.7 246 191-441 15-299 (476)
205 KOG4234 TPR repeat-containing 98.1 3.7E-05 8.1E-10 68.0 11.7 99 51-163 98-201 (271)
206 PRK05340 UDP-2,3-diacylglucosa 98.1 1.5E-05 3.2E-10 75.5 9.8 209 223-464 2-238 (241)
207 KOG4648 Uncharacterized conser 98.1 4.6E-06 9.9E-11 79.3 5.7 98 51-162 100-197 (536)
208 KOG1308 Hsp70-interacting prot 98.1 1.2E-06 2.6E-11 83.4 1.5 103 12-114 112-214 (377)
209 PF13428 TPR_14: Tetratricopep 98.0 1.3E-05 2.8E-10 54.1 5.5 40 84-123 3-42 (44)
210 PF14938 SNAP: Soluble NSF att 98.0 2.1E-05 4.5E-10 76.4 9.1 126 14-142 35-179 (282)
211 PF04733 Coatomer_E: Coatomer 98.0 3.5E-05 7.5E-10 74.8 10.6 119 13-131 130-250 (290)
212 PF13431 TPR_17: Tetratricopep 98.0 5.4E-06 1.2E-10 52.4 3.3 32 71-102 2-33 (34)
213 KOG4555 TPR repeat-containing 98.0 3.4E-05 7.4E-10 63.5 8.7 91 50-142 45-139 (175)
214 PF13428 TPR_14: Tetratricopep 98.0 1.2E-05 2.7E-10 54.1 5.2 40 50-89 3-42 (44)
215 PF13431 TPR_17: Tetratricopep 98.0 6.2E-06 1.3E-10 52.1 3.3 34 36-69 1-34 (34)
216 cd07392 MPP_PAE1087 Pyrobaculu 98.0 0.0001 2.2E-09 66.6 12.8 66 224-296 1-67 (188)
217 COG0622 Predicted phosphoester 98.0 0.00027 5.9E-09 62.7 14.8 160 222-467 2-166 (172)
218 cd07403 MPP_TTHA0053 Thermus t 98.0 7.2E-05 1.6E-09 63.5 10.8 107 225-423 1-107 (129)
219 COG1729 Uncharacterized protei 97.9 6.2E-05 1.3E-09 70.4 10.1 100 51-164 144-249 (262)
220 PF06552 TOM20_plant: Plant sp 97.9 6.3E-05 1.4E-09 65.9 9.5 78 9-86 20-118 (186)
221 COG4785 NlpI Lipoprotein NlpI, 97.9 5.5E-05 1.2E-09 67.8 8.6 75 8-82 93-167 (297)
222 TIGR01854 lipid_A_lpxH UDP-2,3 97.9 5.5E-05 1.2E-09 71.1 9.1 199 225-452 2-226 (231)
223 PF00515 TPR_1: Tetratricopept 97.9 2.9E-05 6.4E-10 49.0 4.5 32 83-114 2-33 (34)
224 KOG1130 Predicted G-alpha GTPa 97.8 2.1E-05 4.6E-10 76.5 5.0 127 14-142 195-339 (639)
225 PLN03081 pentatricopeptide (PP 97.8 0.00041 9E-09 76.3 15.8 124 14-142 259-384 (697)
226 PF00515 TPR_1: Tetratricopept 97.8 3.6E-05 7.9E-10 48.5 4.4 32 49-80 2-33 (34)
227 PF14938 SNAP: Soluble NSF att 97.8 0.00016 3.4E-09 70.3 10.9 106 11-116 111-230 (282)
228 PF07719 TPR_2: Tetratricopept 97.8 6.7E-05 1.5E-09 47.2 5.2 33 83-115 2-34 (34)
229 KOG1586 Protein required for f 97.8 0.0009 2E-08 60.9 14.0 106 12-117 71-189 (288)
230 cd07399 MPP_YvnB Bacillus subt 97.8 0.0023 5E-08 59.4 17.5 194 223-466 2-213 (214)
231 PF04733 Coatomer_E: Coatomer 97.8 0.00012 2.6E-09 71.0 9.2 102 18-119 169-273 (290)
232 PF06874 FBPase_2: Firmicute f 97.8 0.00031 6.7E-09 72.6 12.3 56 394-452 507-572 (640)
233 KOG4340 Uncharacterized conser 97.7 0.00031 6.7E-09 66.0 10.6 132 9-142 39-202 (459)
234 PF13512 TPR_18: Tetratricopep 97.7 0.00048 1E-08 58.5 10.9 84 47-130 9-98 (142)
235 KOG1941 Acetylcholine receptor 97.7 0.00014 3.1E-09 69.9 8.2 176 48-244 83-269 (518)
236 PF07719 TPR_2: Tetratricopept 97.7 0.0001 2.2E-09 46.3 5.1 32 49-80 2-33 (34)
237 KOG3785 Uncharacterized conser 97.7 0.00013 2.8E-09 70.0 7.8 141 22-166 30-187 (557)
238 PF03704 BTAD: Bacterial trans 97.7 0.0016 3.5E-08 56.3 14.3 99 13-111 5-125 (146)
239 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0011 2.5E-08 59.9 14.0 131 10-142 91-226 (291)
240 PLN03081 pentatricopeptide (PP 97.7 0.001 2.3E-08 73.1 15.8 124 14-142 290-415 (697)
241 KOG2796 Uncharacterized conser 97.6 0.00068 1.5E-08 62.7 11.4 136 14-163 177-319 (366)
242 KOG2376 Signal recognition par 97.6 0.00064 1.4E-08 69.4 12.0 122 15-142 13-134 (652)
243 COG4700 Uncharacterized protei 97.6 0.001 2.3E-08 58.4 11.2 120 20-142 62-184 (251)
244 cd07400 MPP_YydB Bacillus subt 97.6 0.0013 2.9E-08 56.7 12.2 29 394-423 101-129 (144)
245 KOG2376 Signal recognition par 97.6 0.00064 1.4E-08 69.4 11.4 120 18-142 83-248 (652)
246 PLN03218 maturation of RBCL 1; 97.6 0.0031 6.6E-08 71.7 18.1 126 13-142 506-638 (1060)
247 KOG4642 Chaperone-dependent E3 97.5 0.00012 2.6E-09 66.6 5.3 88 53-142 15-102 (284)
248 PLN03077 Protein ECB2; Provisi 97.5 0.0023 5.1E-08 72.1 15.9 116 20-142 530-649 (857)
249 COG3071 HemY Uncharacterized e 97.5 0.0036 7.9E-08 61.3 14.4 128 13-142 83-211 (400)
250 cd07395 MPP_CSTP1 Homo sapiens 97.4 0.0082 1.8E-07 57.5 16.8 27 395-422 195-221 (262)
251 cd07383 MPP_Dcr2 Saccharomyces 97.4 0.0037 8E-08 57.3 13.8 70 223-292 4-87 (199)
252 PLN03218 maturation of RBCL 1; 97.4 0.0033 7.2E-08 71.4 15.9 125 16-142 581-708 (1060)
253 KOG2053 Mitochondrial inherita 97.4 0.0023 5.1E-08 68.4 13.3 108 23-131 18-125 (932)
254 PF12968 DUF3856: Domain of Un 97.4 0.0067 1.4E-07 49.3 12.8 94 18-111 13-129 (144)
255 COG0457 NrfG FOG: TPR repeat [ 97.4 0.0056 1.2E-07 55.3 14.3 118 23-142 139-260 (291)
256 KOG1130 Predicted G-alpha GTPa 97.3 0.0011 2.4E-08 64.9 9.5 120 12-131 233-370 (639)
257 COG3071 HemY Uncharacterized e 97.3 0.0047 1E-07 60.5 13.6 124 13-142 262-385 (400)
258 PRK11340 phosphodiesterase Yae 97.3 0.0006 1.3E-08 65.7 7.6 71 221-294 49-125 (271)
259 KOG2796 Uncharacterized conser 97.3 0.0023 5.1E-08 59.2 10.6 118 9-126 207-333 (366)
260 KOG1941 Acetylcholine receptor 97.3 0.0011 2.4E-08 63.9 8.5 126 15-142 123-270 (518)
261 KOG1310 WD40 repeat protein [G 97.3 0.001 2.2E-08 67.1 8.4 109 9-117 369-480 (758)
262 COG3118 Thioredoxin domain-con 97.3 0.01 2.3E-07 56.2 14.6 115 16-130 136-286 (304)
263 KOG2471 TPR repeat-containing 97.3 0.00089 1.9E-08 66.9 7.8 120 12-131 238-384 (696)
264 PF13181 TPR_8: Tetratricopept 97.3 0.00056 1.2E-08 42.9 4.3 31 83-113 2-32 (34)
265 cd07402 MPP_GpdQ Enterobacter 97.2 0.0027 5.8E-08 59.9 11.0 67 224-294 2-83 (240)
266 PRK04036 DNA polymerase II sma 97.2 0.0036 7.7E-08 65.7 12.6 53 409-465 442-503 (504)
267 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0019 4.2E-08 61.7 9.2 95 48-144 81-179 (390)
268 KOG0545 Aryl-hydrocarbon recep 97.2 0.0012 2.6E-08 60.4 7.6 102 48-163 178-297 (329)
269 KOG4340 Uncharacterized conser 97.2 0.003 6.5E-08 59.5 10.3 86 23-108 19-104 (459)
270 cd07385 MPP_YkuE_C Bacillus su 97.2 0.00074 1.6E-08 63.0 6.5 70 222-294 2-76 (223)
271 PF13181 TPR_8: Tetratricopept 97.2 0.00068 1.5E-08 42.5 4.2 31 49-79 2-32 (34)
272 KOG1915 Cell cycle control pro 97.2 0.0048 1E-07 61.6 11.9 128 14-142 404-531 (677)
273 cd07390 MPP_AQ1575 Aquifex aeo 97.2 0.0013 2.7E-08 58.6 7.2 43 249-296 42-84 (168)
274 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0031 6.7E-08 44.0 7.4 47 83-129 2-48 (53)
275 PF05843 Suf: Suppressor of fo 97.1 0.0038 8.2E-08 60.5 10.4 115 16-130 3-121 (280)
276 COG2976 Uncharacterized protei 97.1 0.015 3.3E-07 51.8 12.8 101 14-116 89-193 (207)
277 PF04184 ST7: ST7 protein; In 97.1 0.003 6.5E-08 63.8 9.4 119 20-142 174-319 (539)
278 cd07391 MPP_PF1019 Pyrococcus 97.0 0.0017 3.6E-08 58.1 6.9 45 250-294 42-88 (172)
279 PRK10941 hypothetical protein; 97.0 0.0087 1.9E-07 57.2 11.9 79 48-126 181-259 (269)
280 KOG4507 Uncharacterized conser 97.0 0.0032 6.8E-08 64.4 9.1 106 21-126 613-720 (886)
281 cd07384 MPP_Cdc1_like Saccharo 97.0 0.0056 1.2E-07 54.6 9.9 45 250-294 46-100 (171)
282 KOG2053 Mitochondrial inherita 97.0 0.0094 2E-07 63.9 12.8 110 8-118 37-146 (932)
283 cd08163 MPP_Cdc1 Saccharomyces 96.9 0.046 1E-06 52.1 15.8 162 250-426 46-233 (257)
284 PLN03077 Protein ECB2; Provisi 96.9 0.0073 1.6E-07 68.2 12.1 127 13-142 553-715 (857)
285 KOG1070 rRNA processing protei 96.9 0.0094 2E-07 66.7 12.1 125 16-142 1532-1658(1710)
286 PF04781 DUF627: Protein of un 96.9 0.011 2.4E-07 47.7 9.4 92 20-111 2-107 (111)
287 KOG2610 Uncharacterized conser 96.8 0.011 2.5E-07 56.6 10.5 122 19-142 108-233 (491)
288 TIGR03729 acc_ester putative p 96.8 0.0027 5.8E-08 60.0 6.5 67 224-294 2-74 (239)
289 KOG1915 Cell cycle control pro 96.8 0.023 5E-07 57.0 12.9 126 14-142 73-198 (677)
290 KOG3081 Vesicle coat complex C 96.8 0.036 7.9E-07 51.7 13.0 84 48-131 169-256 (299)
291 KOG3081 Vesicle coat complex C 96.7 0.024 5.3E-07 52.8 11.8 106 13-118 168-278 (299)
292 PF03704 BTAD: Bacterial trans 96.7 0.013 2.7E-07 50.7 9.7 63 14-76 62-124 (146)
293 PRK04841 transcriptional regul 96.7 0.023 5.1E-07 64.5 14.5 96 16-111 493-602 (903)
294 PF15015 NYD-SP12_N: Spermatog 96.7 0.069 1.5E-06 52.9 15.2 97 15-111 177-291 (569)
295 PF09613 HrpB1_HrpK: Bacterial 96.7 0.2 4.3E-06 43.6 16.5 114 10-126 6-120 (160)
296 KOG3824 Huntingtin interacting 96.6 0.0086 1.9E-07 56.7 8.3 79 12-90 114-192 (472)
297 PF10300 DUF3808: Protein of u 96.6 0.02 4.4E-07 59.6 12.0 105 27-131 246-355 (468)
298 PF13174 TPR_6: Tetratricopept 96.6 0.0038 8.3E-08 38.5 4.2 31 84-114 2-32 (33)
299 TIGR00619 sbcd exonuclease Sbc 96.6 0.0053 1.1E-07 58.5 7.0 71 223-294 2-88 (253)
300 PRK04841 transcriptional regul 96.6 0.03 6.5E-07 63.6 14.4 128 13-142 451-597 (903)
301 COG4105 ComL DNA uptake lipopr 96.6 0.11 2.3E-06 48.7 14.9 122 11-132 68-220 (254)
302 cd07396 MPP_Nbla03831 Homo sap 96.6 0.0061 1.3E-07 58.6 7.2 73 223-296 2-88 (267)
303 cd08166 MPP_Cdc1_like_1 unchar 96.5 0.0082 1.8E-07 54.2 7.1 44 250-293 43-92 (195)
304 KOG3824 Huntingtin interacting 96.5 0.0085 1.9E-07 56.7 7.4 75 51-125 119-193 (472)
305 PF13174 TPR_6: Tetratricopept 96.5 0.0055 1.2E-07 37.8 4.3 31 16-46 2-32 (33)
306 PF13176 TPR_7: Tetratricopept 96.5 0.0053 1.2E-07 39.1 4.3 25 85-109 2-26 (36)
307 PF05843 Suf: Suppressor of fo 96.5 0.055 1.2E-06 52.4 13.3 106 13-118 34-143 (280)
308 PF14561 TPR_20: Tetratricopep 96.5 0.034 7.3E-07 43.7 9.6 64 34-97 8-73 (90)
309 PRK10941 hypothetical protein; 96.5 0.042 9E-07 52.6 12.1 77 14-90 181-257 (269)
310 KOG1586 Protein required for f 96.5 0.073 1.6E-06 48.8 12.7 129 11-142 31-178 (288)
311 PF10300 DUF3808: Protein of u 96.5 0.021 4.6E-07 59.4 10.8 103 10-112 263-377 (468)
312 KOG3364 Membrane protein invol 96.3 0.088 1.9E-06 44.0 11.5 84 47-130 31-119 (149)
313 KOG1585 Protein required for f 96.3 0.17 3.8E-06 46.7 14.4 102 14-115 31-143 (308)
314 PRK11148 cyclic 3',5'-adenosin 96.3 0.011 2.4E-07 57.2 7.3 71 222-294 15-98 (275)
315 PF13176 TPR_7: Tetratricopept 96.3 0.0075 1.6E-07 38.4 4.1 24 51-74 2-25 (36)
316 PHA02546 47 endonuclease subun 96.3 0.0082 1.8E-07 59.8 6.4 71 223-294 2-89 (340)
317 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.3 0.0089 1.9E-07 57.0 6.3 71 224-294 1-86 (262)
318 KOG2396 HAT (Half-A-TPR) repea 96.2 0.071 1.5E-06 54.0 12.1 94 31-124 88-182 (568)
319 PF13281 DUF4071: Domain of un 96.2 0.17 3.7E-06 50.5 14.6 71 10-80 175-258 (374)
320 KOG1308 Hsp70-interacting prot 96.1 0.00099 2.1E-08 63.9 -1.1 86 55-142 121-206 (377)
321 smart00028 TPR Tetratricopepti 96.1 0.011 2.3E-07 35.4 3.9 30 84-113 3-32 (34)
322 KOG4814 Uncharacterized conser 96.1 0.073 1.6E-06 55.3 11.7 97 15-111 355-457 (872)
323 smart00028 TPR Tetratricopepti 96.0 0.011 2.4E-07 35.3 3.8 31 50-80 3-33 (34)
324 PF14561 TPR_20: Tetratricopep 96.0 0.044 9.5E-07 43.1 7.9 67 66-132 6-74 (90)
325 cd07393 MPP_DR1119 Deinococcus 96.0 0.018 4E-07 54.1 6.7 44 394-440 181-227 (232)
326 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.04 8.7E-07 38.4 6.6 36 17-52 4-39 (53)
327 PF02259 FAT: FAT domain; Int 95.9 0.23 5.1E-06 49.4 14.8 121 10-130 142-306 (352)
328 COG4976 Predicted methyltransf 95.9 0.012 2.7E-07 53.5 4.7 58 24-81 5-62 (287)
329 KOG2047 mRNA splicing factor [ 95.8 0.81 1.8E-05 48.0 18.0 127 14-142 387-535 (835)
330 KOG1070 rRNA processing protei 95.8 0.23 5E-06 56.2 15.1 112 28-142 1511-1624(1710)
331 PF04184 ST7: ST7 protein; In 95.8 0.15 3.2E-06 51.9 12.5 61 48-108 259-321 (539)
332 cd00840 MPP_Mre11_N Mre11 nucl 95.8 0.018 3.8E-07 53.5 5.9 73 224-297 2-92 (223)
333 KOG0530 Protein farnesyltransf 95.7 0.12 2.7E-06 48.1 10.7 115 26-142 55-171 (318)
334 KOG0546 HSP90 co-chaperone CPR 95.7 0.019 4.1E-07 55.7 5.4 118 14-131 222-358 (372)
335 COG4976 Predicted methyltransf 95.6 0.017 3.7E-07 52.6 4.7 62 56-117 3-64 (287)
336 COG4186 Predicted phosphoester 95.6 0.12 2.5E-06 44.3 9.2 47 250-300 46-92 (186)
337 KOG2610 Uncharacterized conser 95.5 0.093 2E-06 50.6 9.4 136 10-145 133-274 (491)
338 PF09986 DUF2225: Uncharacteri 95.5 0.089 1.9E-06 48.6 9.3 88 26-113 89-196 (214)
339 TIGR00024 SbcD_rel_arch putati 95.5 0.034 7.3E-07 51.9 6.4 42 250-295 59-103 (225)
340 KOG0918 Selenium-binding prote 95.4 0.0006 1.3E-08 66.3 -5.6 192 248-453 46-248 (476)
341 cd08165 MPP_MPPE1 human MPPE1 95.4 0.029 6.2E-07 49.2 5.3 45 250-294 39-89 (156)
342 TIGR00583 mre11 DNA repair pro 95.4 0.049 1.1E-06 55.3 7.6 74 221-295 3-124 (405)
343 PRK10966 exonuclease subunit S 95.4 0.034 7.3E-07 56.7 6.5 70 223-294 2-87 (407)
344 cd07398 MPP_YbbF-LpxH Escheric 95.2 0.043 9.4E-07 50.7 6.3 26 393-419 176-201 (217)
345 cd07380 MPP_CWF19_N Schizosacc 95.2 0.05 1.1E-06 47.2 6.2 67 225-292 1-68 (150)
346 TIGR02561 HrpB1_HrpK type III 95.2 1.3 2.9E-05 37.9 14.4 87 12-98 8-94 (153)
347 COG3914 Spy Predicted O-linked 95.1 0.35 7.5E-06 50.2 12.5 107 20-126 73-186 (620)
348 PF10602 RPN7: 26S proteasome 95.1 0.47 1E-05 42.4 12.2 99 11-109 33-140 (177)
349 KOG2471 TPR repeat-containing 95.0 0.035 7.5E-07 55.9 5.1 81 15-95 284-382 (696)
350 COG2908 Uncharacterized protei 94.9 0.093 2E-06 48.4 7.2 177 247-457 27-229 (237)
351 KOG2047 mRNA splicing factor [ 94.9 0.34 7.3E-06 50.7 11.8 139 11-161 422-581 (835)
352 cd00839 MPP_PAPs purple acid p 94.9 0.058 1.2E-06 52.6 6.3 71 222-296 5-83 (294)
353 KOG3617 WD40 and TPR repeat-co 94.9 0.24 5.2E-06 53.1 10.8 98 14-111 858-996 (1416)
354 KOG3325 Membrane coat complex 94.8 0.57 1.2E-05 39.7 10.8 120 224-429 3-127 (183)
355 PF09613 HrpB1_HrpK: Bacterial 94.7 0.63 1.4E-05 40.5 11.5 86 49-134 11-96 (160)
356 cd08164 MPP_Ted1 Saccharomyces 94.7 0.056 1.2E-06 48.8 5.2 65 229-293 24-110 (193)
357 COG2912 Uncharacterized conser 94.7 0.24 5.2E-06 46.8 9.5 79 48-126 181-259 (269)
358 PF13281 DUF4071: Domain of un 94.5 0.39 8.5E-06 47.9 11.1 100 15-114 142-258 (374)
359 COG0790 FOG: TPR repeat, SEL1 94.5 1.2 2.6E-05 43.1 14.6 106 14-123 109-230 (292)
360 cd07386 MPP_DNA_pol_II_small_a 94.3 0.055 1.2E-06 51.2 4.5 43 250-294 36-94 (243)
361 KOG1550 Extracellular protein 94.3 0.58 1.3E-05 50.0 12.6 111 13-127 243-371 (552)
362 PF10579 Rapsyn_N: Rapsyn N-te 94.3 0.53 1.1E-05 35.5 8.6 65 13-77 5-72 (80)
363 COG1407 Predicted ICC-like pho 94.2 0.13 2.9E-06 47.6 6.5 77 223-302 21-118 (235)
364 PF13374 TPR_10: Tetratricopep 94.0 0.13 2.9E-06 33.3 4.7 29 83-111 3-31 (42)
365 COG1409 Icc Predicted phosphoh 94.0 0.18 4E-06 48.8 7.6 74 223-298 2-82 (301)
366 PF13374 TPR_10: Tetratricopep 93.9 0.14 2.9E-06 33.2 4.6 30 48-77 2-31 (42)
367 COG5191 Uncharacterized conser 93.8 0.13 2.9E-06 49.0 5.9 88 37-124 96-184 (435)
368 cd07401 MPP_TMEM62_N Homo sapi 93.8 0.15 3.2E-06 48.7 6.4 28 398-426 190-217 (256)
369 PF08424 NRDE-2: NRDE-2, neces 93.8 1.5 3.2E-05 43.4 13.7 92 35-126 6-109 (321)
370 COG2912 Uncharacterized conser 93.8 0.5 1.1E-05 44.7 9.5 74 17-90 184-257 (269)
371 COG1408 Predicted phosphohydro 93.7 0.16 3.5E-06 49.0 6.4 71 221-295 44-119 (284)
372 COG2129 Predicted phosphoester 93.7 5.7 0.00012 36.5 16.2 212 222-465 4-225 (226)
373 PRK13184 pknD serine/threonine 93.5 0.58 1.3E-05 52.4 11.2 107 18-125 479-595 (932)
374 COG1311 HYS2 Archaeal DNA poly 93.5 1.7 3.7E-05 44.4 13.4 220 223-466 227-472 (481)
375 COG2976 Uncharacterized protei 93.5 1.6 3.6E-05 39.1 11.7 88 51-142 92-183 (207)
376 PF08424 NRDE-2: NRDE-2, neces 93.4 2.1 4.6E-05 42.3 13.9 105 7-111 12-131 (321)
377 KOG1585 Protein required for f 93.2 1.7 3.7E-05 40.4 11.7 129 14-142 71-214 (308)
378 KOG4507 Uncharacterized conser 93.1 0.26 5.6E-06 51.0 6.9 95 37-131 202-298 (886)
379 KOG3364 Membrane protein invol 93.0 0.98 2.1E-05 38.0 9.0 75 14-88 32-111 (149)
380 cd00845 MPP_UshA_N_like Escher 92.7 0.22 4.7E-06 47.3 5.6 66 223-293 2-81 (252)
381 PF02259 FAT: FAT domain; Int 92.6 1.4 3.1E-05 43.7 11.9 102 13-114 183-341 (352)
382 PF08631 SPO22: Meiosis protei 92.6 5.8 0.00013 38.3 15.5 103 11-113 32-152 (278)
383 KOG3662 Cell division control 92.5 0.29 6.2E-06 49.1 6.3 69 232-307 76-150 (410)
384 PF04781 DUF627: Protein of un 92.4 0.95 2.1E-05 36.7 8.0 87 54-142 2-102 (111)
385 KOG2300 Uncharacterized conser 92.3 6.5 0.00014 40.2 15.3 115 12-130 365-492 (629)
386 PF10602 RPN7: 26S proteasome 92.2 1.5 3.3E-05 39.2 10.1 95 48-142 36-137 (177)
387 PF07079 DUF1347: Protein of u 92.0 4.2 9.1E-05 41.2 13.5 124 14-142 379-519 (549)
388 PF12862 Apc5: Anaphase-promot 92.0 0.87 1.9E-05 36.0 7.4 57 58-114 8-73 (94)
389 COG3118 Thioredoxin domain-con 91.8 1.5 3.4E-05 41.9 10.0 60 48-107 134-193 (304)
390 PF12862 Apc5: Anaphase-promot 91.8 0.89 1.9E-05 35.9 7.3 56 23-78 7-71 (94)
391 KOG0529 Protein geranylgeranyl 91.7 2.2 4.7E-05 42.7 11.2 104 28-131 89-198 (421)
392 PF04910 Tcf25: Transcriptiona 91.6 2.4 5.1E-05 42.6 11.7 102 40-142 32-163 (360)
393 KOG2300 Uncharacterized conser 91.5 3.8 8.2E-05 41.9 12.6 130 13-144 6-153 (629)
394 KOG4151 Myosin assembly protei 91.4 0.83 1.8E-05 49.1 8.6 115 12-126 51-171 (748)
395 COG3629 DnrI DNA-binding trans 91.4 1.1 2.5E-05 42.8 8.7 81 30-112 137-217 (280)
396 TIGR02561 HrpB1_HrpK type III 91.2 3.4 7.4E-05 35.5 10.5 84 51-134 13-96 (153)
397 PF12968 DUF3856: Domain of Un 91.2 2.5 5.4E-05 34.7 9.1 70 8-77 49-129 (144)
398 KOG1550 Extracellular protein 91.1 3 6.5E-05 44.6 12.6 105 16-126 290-406 (552)
399 PF07720 TPR_3: Tetratricopept 91.0 0.83 1.8E-05 29.0 5.1 31 84-114 3-35 (36)
400 PRK15180 Vi polysaccharide bio 90.9 1.2 2.6E-05 45.2 8.5 119 22-142 297-415 (831)
401 PF10373 EST1_DNA_bind: Est1 D 90.8 0.85 1.8E-05 43.8 7.6 62 67-128 1-62 (278)
402 PF07079 DUF1347: Protein of u 90.8 2.1 4.6E-05 43.2 10.1 56 17-73 465-520 (549)
403 cd07378 MPP_ACP5 Homo sapiens 90.6 0.46 9.9E-06 45.8 5.5 71 223-294 2-83 (277)
404 PF10579 Rapsyn_N: Rapsyn N-te 90.5 2.6 5.7E-05 31.9 8.1 61 50-110 8-71 (80)
405 COG3629 DnrI DNA-binding trans 90.4 1.6 3.4E-05 41.9 8.7 76 64-143 137-212 (280)
406 KOG4814 Uncharacterized conser 90.4 1.9 4E-05 45.4 9.6 89 49-139 355-449 (872)
407 PF07720 TPR_3: Tetratricopept 90.3 1 2.3E-05 28.5 5.0 30 16-45 3-34 (36)
408 PF10516 SHNi-TPR: SHNi-TPR; 90.2 0.59 1.3E-05 30.1 3.9 29 83-111 2-30 (38)
409 PF09986 DUF2225: Uncharacteri 90.2 3.8 8.2E-05 37.9 10.9 70 11-80 115-197 (214)
410 PF10373 EST1_DNA_bind: Est1 D 89.9 1 2.3E-05 43.1 7.4 62 33-94 1-62 (278)
411 COG0420 SbcD DNA repair exonuc 89.7 0.84 1.8E-05 46.5 6.8 48 250-297 41-91 (390)
412 PF04910 Tcf25: Transcriptiona 89.6 4.1 8.9E-05 40.9 11.4 103 8-110 34-167 (360)
413 COG5191 Uncharacterized conser 89.6 0.56 1.2E-05 44.9 4.9 81 8-88 101-182 (435)
414 KOG0530 Protein farnesyltransf 89.6 4.2 9.1E-05 38.3 10.3 92 28-119 92-184 (318)
415 KOG2396 HAT (Half-A-TPR) repea 89.3 2.4 5.3E-05 43.3 9.3 75 14-88 105-180 (568)
416 PF10516 SHNi-TPR: SHNi-TPR; 89.3 0.69 1.5E-05 29.8 3.7 28 16-43 3-30 (38)
417 COG3914 Spy Predicted O-linked 89.3 3.1 6.7E-05 43.5 10.2 101 27-127 43-147 (620)
418 KOG2041 WD40 repeat protein [G 89.2 4.7 0.0001 42.9 11.5 88 9-108 791-878 (1189)
419 COG0790 FOG: TPR repeat, SEL1 88.6 13 0.00029 35.7 14.2 124 15-142 74-215 (292)
420 PF08631 SPO22: Meiosis protei 88.6 10 0.00022 36.5 13.2 103 24-126 3-131 (278)
421 KOG1310 WD40 repeat protein [G 88.4 1.4 3.1E-05 45.3 7.0 81 60-142 386-469 (758)
422 PF07721 TPR_4: Tetratricopept 88.3 0.72 1.6E-05 26.7 3.0 22 84-105 3-24 (26)
423 COG4649 Uncharacterized protei 88.2 17 0.00036 32.3 12.4 57 18-74 62-120 (221)
424 KOG3617 WD40 and TPR repeat-co 88.2 6.8 0.00015 42.7 12.0 93 48-142 858-991 (1416)
425 PF14863 Alkyl_sulf_dimr: Alky 88.0 2.1 4.5E-05 36.6 6.9 46 17-62 73-118 (141)
426 PF07721 TPR_4: Tetratricopept 87.4 0.73 1.6E-05 26.7 2.7 23 50-72 3-25 (26)
427 PF11207 DUF2989: Protein of u 87.2 6.9 0.00015 35.5 10.0 55 81-138 140-198 (203)
428 KOG0890 Protein kinase of the 87.0 7.7 0.00017 47.0 12.7 118 10-129 1666-1802(2382)
429 PRK15180 Vi polysaccharide bio 87.0 0.95 2.1E-05 45.9 4.8 108 14-121 323-430 (831)
430 KOG1839 Uncharacterized protei 87.0 3.6 7.9E-05 46.9 9.8 103 10-112 969-1087(1236)
431 cd07410 MPP_CpdB_N Escherichia 86.7 0.99 2.1E-05 43.5 4.9 20 398-418 209-229 (277)
432 COG3898 Uncharacterized membra 86.6 18 0.00038 36.3 13.0 117 26-144 166-289 (531)
433 PLN02533 probable purple acid 86.4 1.1 2.4E-05 46.2 5.2 23 395-418 311-333 (427)
434 PF14582 Metallophos_3: Metall 86.3 1 2.2E-05 41.4 4.3 71 223-295 7-103 (255)
435 KOG1258 mRNA processing protei 86.3 29 0.00064 36.5 15.2 129 3-131 286-415 (577)
436 COG2909 MalT ATP-dependent tra 86.0 25 0.00054 38.9 14.9 101 13-113 414-528 (894)
437 KOG0985 Vesicle coat protein c 85.8 18 0.00038 40.6 13.7 60 12-76 1102-1161(1666)
438 PF11207 DUF2989: Protein of u 85.4 3.7 8E-05 37.2 7.3 77 25-103 117-199 (203)
439 cd02682 MIT_AAA_Arch MIT: doma 85.3 5.5 0.00012 29.9 7.1 32 12-43 4-35 (75)
440 KOG0529 Protein geranylgeranyl 85.0 19 0.00042 36.1 12.7 105 26-130 40-159 (421)
441 KOG0546 HSP90 co-chaperone CPR 85.0 0.53 1.1E-05 45.9 1.9 85 14-98 275-359 (372)
442 PF15015 NYD-SP12_N: Spermatog 84.9 4.2 9E-05 40.8 7.9 84 55-140 183-284 (569)
443 KOG1839 Uncharacterized protei 84.8 4.4 9.5E-05 46.3 9.1 128 12-142 930-1081(1236)
444 COG4941 Predicted RNA polymera 84.4 7.1 0.00015 38.1 9.1 96 29-125 311-408 (415)
445 KOG2422 Uncharacterized conser 83.8 36 0.00079 35.8 14.3 115 27-142 251-402 (665)
446 KOG2863 RNA lariat debranching 83.6 1.4 3E-05 43.1 4.0 73 223-296 2-90 (456)
447 cd07412 MPP_YhcR_N Bacillus su 83.5 1.4 3E-05 42.8 4.2 65 224-293 3-87 (288)
448 PF10345 Cohesin_load: Cohesin 83.5 44 0.00094 36.3 16.1 110 9-119 54-178 (608)
449 COG3855 Fbp Uncharacterized pr 83.4 2.5 5.4E-05 42.6 5.8 57 395-452 515-580 (648)
450 COG3898 Uncharacterized membra 83.2 25 0.00055 35.2 12.4 119 21-142 91-212 (531)
451 PF10255 Paf67: RNA polymerase 83.0 5.2 0.00011 40.6 8.0 97 17-114 125-231 (404)
452 cd02682 MIT_AAA_Arch MIT: doma 83.0 8 0.00017 29.1 7.1 30 100-129 31-60 (75)
453 COG3947 Response regulator con 82.9 5.5 0.00012 38.1 7.6 55 54-108 285-339 (361)
454 COG3947 Response regulator con 82.7 4.9 0.00011 38.4 7.1 59 17-75 282-340 (361)
455 KOG1914 mRNA cleavage and poly 82.2 7.6 0.00017 40.3 8.8 103 7-111 13-116 (656)
456 cd07408 MPP_SA0022_N Staphyloc 81.8 2.6 5.6E-05 40.2 5.2 64 224-293 3-81 (257)
457 KOG3807 Predicted membrane pro 81.2 33 0.00072 33.6 12.2 94 18-113 188-306 (556)
458 PF09670 Cas_Cas02710: CRISPR- 80.6 30 0.00066 35.0 12.7 63 16-78 133-199 (379)
459 PF10255 Paf67: RNA polymerase 80.3 2.7 5.8E-05 42.6 4.9 61 50-111 124-193 (404)
460 KOG1914 mRNA cleavage and poly 79.9 19 0.00041 37.5 10.6 73 38-111 10-82 (656)
461 PF11817 Foie-gras_1: Foie gra 79.8 18 0.00038 34.2 10.2 79 30-108 154-244 (247)
462 smart00386 HAT HAT (Half-A-TPR 79.8 4.9 0.00011 23.8 4.4 29 28-56 1-29 (33)
463 KOG0686 COP9 signalosome, subu 79.0 14 0.00031 37.0 9.2 94 15-108 151-255 (466)
464 cd00842 MPP_ASMase acid sphing 78.7 5 0.00011 39.0 6.3 72 226-297 42-125 (296)
465 KOG2581 26S proteasome regulat 78.3 30 0.00066 34.8 11.2 103 14-116 169-281 (493)
466 COG4455 ImpE Protein of avirul 77.7 19 0.0004 33.2 8.8 63 55-117 8-70 (273)
467 KOG2041 WD40 repeat protein [G 77.3 21 0.00046 38.3 10.3 81 48-142 796-876 (1189)
468 smart00386 HAT HAT (Half-A-TPR 77.3 7.4 0.00016 23.0 4.7 29 96-124 1-29 (33)
469 PF14863 Alkyl_sulf_dimr: Alky 77.1 13 0.00028 31.9 7.4 52 80-131 68-119 (141)
470 cd07411 MPP_SoxB_N Thermus the 76.9 5.1 0.00011 38.3 5.6 35 253-293 55-94 (264)
471 cd02681 MIT_calpain7_1 MIT: do 76.9 5.2 0.00011 30.2 4.4 18 94-111 18-35 (76)
472 COG3855 Fbp Uncharacterized pr 75.5 2.2 4.7E-05 43.1 2.6 44 250-298 191-234 (648)
473 PF11817 Foie-gras_1: Foie gra 74.7 16 0.00035 34.5 8.3 62 14-75 178-245 (247)
474 COG1768 Predicted phosphohydro 74.2 7.1 0.00015 34.5 5.1 93 223-326 18-112 (230)
475 KOG1258 mRNA processing protei 74.2 95 0.0021 32.9 14.1 116 11-126 363-485 (577)
476 cd02681 MIT_calpain7_1 MIT: do 73.3 8.7 0.00019 29.0 4.8 32 12-43 4-35 (76)
477 KOG3783 Uncharacterized conser 73.3 34 0.00074 35.7 10.5 67 50-116 451-525 (546)
478 KOG0985 Vesicle coat protein c 73.1 20 0.00042 40.3 9.1 109 17-133 1197-1330(1666)
479 cd07409 MPP_CD73_N CD73 ecto-5 72.6 7.5 0.00016 37.5 5.6 24 394-418 193-217 (281)
480 PF04212 MIT: MIT (microtubule 72.3 10 0.00022 27.8 5.1 31 12-42 3-33 (69)
481 cd02683 MIT_1 MIT: domain cont 72.2 37 0.0008 25.7 8.1 31 12-42 4-34 (77)
482 KOG3616 Selective LIM binding 72.2 40 0.00086 36.6 10.8 208 22-243 623-875 (1636)
483 TIGR03504 FimV_Cterm FimV C-te 71.0 8.7 0.00019 25.6 3.9 25 18-42 3-27 (44)
484 PF04212 MIT: MIT (microtubule 71.0 9 0.00019 28.1 4.5 17 94-110 17-33 (69)
485 TIGR03504 FimV_Cterm FimV C-te 70.9 7.8 0.00017 25.8 3.7 22 88-109 5-26 (44)
486 PRK13184 pknD serine/threonine 70.5 32 0.00069 39.1 10.5 101 15-118 513-627 (932)
487 PF05053 Menin: Menin; InterP 70.3 76 0.0016 33.5 12.2 107 4-125 247-367 (618)
488 COG4455 ImpE Protein of avirul 70.1 93 0.002 28.8 12.2 63 20-82 7-69 (273)
489 cd02680 MIT_calpain7_2 MIT: do 70.0 9.8 0.00021 28.6 4.4 33 64-111 3-35 (75)
490 cd07406 MPP_CG11883_N Drosophi 68.9 9 0.00019 36.5 5.2 58 231-293 20-82 (257)
491 PF10952 DUF2753: Protein of u 68.4 30 0.00065 28.7 7.2 28 16-43 3-30 (140)
492 PF12854 PPR_1: PPR repeat 68.1 13 0.00029 22.9 4.2 25 48-72 7-31 (34)
493 KOG2422 Uncharacterized conser 66.8 1.2E+02 0.0026 32.2 12.7 100 8-107 278-403 (665)
494 TIGR00282 metallophosphoestera 66.8 13 0.00029 35.5 5.8 67 223-294 2-71 (266)
495 cd02680 MIT_calpain7_2 MIT: do 66.6 13 0.00029 27.9 4.5 32 12-43 4-35 (75)
496 PF12854 PPR_1: PPR repeat 66.5 16 0.00034 22.6 4.2 28 80-107 5-32 (34)
497 cd02683 MIT_1 MIT: domain cont 65.8 13 0.00029 28.1 4.5 14 65-78 4-17 (77)
498 PF04053 Coatomer_WDAD: Coatom 65.2 77 0.0017 32.8 11.4 57 18-74 299-373 (443)
499 KOG0890 Protein kinase of the 64.2 1.8E+02 0.0039 36.2 15.1 65 46-112 1668-1732(2382)
500 PHA02537 M terminase endonucle 64.0 8.5 0.00018 35.8 3.8 92 25-116 94-212 (230)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-84 Score=570.06 Aligned_cols=285 Identities=41% Similarity=0.750 Sum_probs=275.8
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
+++.++.+.+...+.+.++..+|.++.++|.+|+++..++.| +.|+||+|||+.||+.+|+..|-++++ +|+|||
T Consensus 3 ldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tP----vtvcGDIHGQf~Dllelf~igG~~~~t-~YLFLG 77 (303)
T KOG0372|consen 3 LDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTP----VTVCGDIHGQFYDLLELFRIGGDVPET-NYLFLG 77 (303)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCC----cEEeecccchHHHHHHHHHhCCCCCCC-ceEeec
Confidence 677888899999999999999999999999999999999988 999999999999999999998888766 699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhcc-HHHHHHHHHHhhcccccceeCCcEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
||||||..|+|++.||+.||++||++|.|||||||++.++..|||++||.+||+ ..+|+.++++|+.||++|+|++++|
T Consensus 78 DyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kif 157 (303)
T KOG0372|consen 78 DYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIF 157 (303)
T ss_pred chhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEE
Confidence 999999999999999999999999999999999999999999999999999995 6899999999999999999999999
Q ss_pred EEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeeccc
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHE 416 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~ 416 (486)
|||||+ ||.+.++++|+.++|..+.|+.+.++|+|||||.+..||..|+||+|+.||.++++.||+.||+ ++|+|+||
T Consensus 158 CVHGGl-SP~i~~lDqIr~lDR~~Eiph~g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~-~~I~RaHQ 235 (303)
T KOG0372|consen 158 CVHGGL-SPSIQTLDQIRVLDRKQEVPHDGAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGL-SLICRAHQ 235 (303)
T ss_pred EEcCCC-CcchhhHHHHHHhhccccCCCCCcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCCh-HHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011417 417 VKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 470 (486)
Q Consensus 417 ~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 470 (486)
.+++||++.|+++|+|||||||||+.++|.||||.| +++....|..|++.|..
T Consensus 236 Lv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~l-de~~~~~F~vFeaa~~~ 288 (303)
T KOG0372|consen 236 LVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILEL-DEDLDKDFRVFEAAPQE 288 (303)
T ss_pred HHHhhHHHhcCCceEEEecCCchhhhcCChHHheee-ccccCcceEeeecchhh
Confidence 999999999999999999999999999999999999 88889999999998743
No 2
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=4.4e-78 Score=585.48 Aligned_cols=470 Identities=65% Similarity=1.090 Sum_probs=440.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+..+...|+.++..++|+.|+..|.+||+++|+.+..+.+++.++.+.+++..|+..+.+|++++|....+|+..|.++.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccc-ccccccc-cCCcCCCCcccCC
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS-IDYQSIE-VEPQYSGARIEGD 171 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~-~~~~~l~-~~~~~~~~~l~~~ 171 (486)
.++++.+|...|++...+.|+++.+...+..|.....+.++++|+..-.......... ++..... +...+.+..+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~~~~i~~~y~g~~le~~ 163 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEEDMDLIESDYSGPVLEDH 163 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCccccccccccccccccccccCCcccccc
Confidence 9999999999999999999999999999999999999888999988765221111111 2222222 4556777777765
Q ss_pred CccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCC
Q 011417 172 VITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEEN 251 (486)
Q Consensus 172 ~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~ 251 (486)
.++++++..+++.++.++.++...+..++..+.+.++..|+++++..|....+.++||.||++.++.++|...|.|+.+.
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~ 243 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN 243 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc
Confidence 58999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhccccccee
Q 011417 252 PYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL 331 (486)
Q Consensus 252 ~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i 331 (486)
.|+|.||+||||..|+|+...++..|+.+|+++|++|||||+..|+..|||.+++..+|.++.+..+.++|.+||++..|
T Consensus 244 ~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~~~f~~LPl~~~i 323 (476)
T KOG0376|consen 244 PYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFSEVFIWLPLAHLI 323 (476)
T ss_pred cccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhhhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCcee
Q 011417 332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLV 411 (486)
Q Consensus 332 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~i 411 (486)
+++++.+|||+|+++..+++|+++|.|+..+++.+.++++|||||....|.++|.||.|..||++++.+||+.|++ +.|
T Consensus 324 ~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l-~~i 402 (476)
T KOG0376|consen 324 NNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQPANGRSPSKRGVGLQFGPDVTERFLQDNNL-DKI 402 (476)
T ss_pred cCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCccccCCCccccCceeeeCCCchhhHHhhcch-HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCcccchhhhhc
Q 011417 412 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLRM 484 (486)
Q Consensus 412 ir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (486)
||||+..+.||++.|+|+|+|||||||||+.++|.||++.++.+++++.+++|+++|+|.++||+||++.+++
T Consensus 403 ~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~~~~~ma~~ns~~~~ 475 (476)
T KOG0376|consen 403 IRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHPDVKPMAYANSLLQW 475 (476)
T ss_pred hhccccCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCCCCCCcccccccccC
Confidence 9999999999999999999999999999999999999999977899999999999999999999999998875
No 3
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.3e-76 Score=572.23 Aligned_cols=314 Identities=71% Similarity=1.232 Sum_probs=298.9
Q ss_pred CCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHH
Q 011417 164 SGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFEL 243 (486)
Q Consensus 164 ~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~ 243 (486)
.++++....++.+.++.+++.+.....++..++.++|.++.+++.++|+++++..|...++.++||+||++.+|.++|+.
T Consensus 2 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 2 DGPRLEDEKVTLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 45566666689999999999999998999999999999999999999999999877667899999999999999999999
Q ss_pred cCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhh
Q 011417 244 NGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFC 323 (486)
Q Consensus 244 ~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 323 (486)
.++++..+.|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|+
T Consensus 82 ~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~~l~~~~~~~f~ 161 (316)
T cd07417 82 NGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNEQMFDLFSEVFN 161 (316)
T ss_pred cCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccHHHHHHHHHHHH
Confidence 99987777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHH
Q 011417 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ 403 (486)
Q Consensus 324 ~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~ 403 (486)
+||++++++++++||||||+++...++++|++++|+.+++.+++++|+|||||....++.+++||.|+.||++++++||+
T Consensus 162 ~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~ 241 (316)
T cd07417 162 WLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLE 241 (316)
T ss_pred hchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHH
Confidence 99999999999999999997778899999999999998888999999999999988899999999999999999999999
Q ss_pred HCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-CCceeEEEEeccCCCCCCCcccch
Q 011417 404 DNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-TLKPNIVTFAAVPHPDVKPMAYAN 479 (486)
Q Consensus 404 ~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 479 (486)
+||+ ++||||||++++||++.++++|+|||||||||+..+|+||+|.| ++ +++++|++|++.|+|.+.||+||+
T Consensus 242 ~n~l-~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (316)
T cd07417 242 ENNL-EYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRI-TGSDLKPKFTQFEAVPHPNVKPMAYAN 316 (316)
T ss_pred HcCC-cEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEE-eCCCceeeeEeccCCCCCCCCccCCCC
Confidence 9999 99999999999999999999999999999999999999999999 66 899999999999999999999984
No 4
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-77 Score=516.86 Aligned_cols=287 Identities=39% Similarity=0.691 Sum_probs=277.3
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEc
Q 011417 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (486)
Q Consensus 177 ~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l 256 (486)
+++++++..++++.+++.++..+|+.++++|.++.++.-++.| +.|+||||||+.||.++|+..|--|++ +|+|+
T Consensus 5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tP----VTvCGDIHGQFyDL~eLFrtgG~vP~t-nYiFm 79 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTP----VTVCGDIHGQFYDLLELFRTGGQVPDT-NYIFM 79 (306)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCC----eeEeeccchhHHHHHHHHHhcCCCCCc-ceEEe
Confidence 4788999999999999999999999999999999999998887 999999999999999999999887766 59999
Q ss_pred ccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhcc-HHHHHHHHHHhhcccccceeCCcE
Q 011417 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 335 (486)
Q Consensus 257 Gd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lp~~~~i~~~~ 335 (486)
|||||||..|+|++.+|+.||.+||.+|.+||||||++.++..|||++||+.||+ .+.|+.+.++|+.|+++|+|++++
T Consensus 80 GDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~v 159 (306)
T KOG0373|consen 80 GDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKV 159 (306)
T ss_pred ccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcE
Confidence 9999999999999999999999999999999999999999999999999999995 589999999999999999999999
Q ss_pred EEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecc
Q 011417 336 FVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSH 415 (486)
Q Consensus 336 ~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H 415 (486)
+|||||+ ||++.++++|+-|.|..++|.++.+|||+||||++.+.|..|+||+||.||.+++.+|+..|++ ++|.|+|
T Consensus 160 LCVHGGL-SPdirtlDqir~i~R~qEiPh~G~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L-~LicRaH 237 (306)
T KOG0373|consen 160 LCVHGGL-SPDIRTLDQIRLIERNQEIPHEGPFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNL-NLICRAH 237 (306)
T ss_pred EEEcCCC-CccceeHHHHHhHHhhccCCCCCCccceeccChhhhhhheeCCCCcceeechhhhHHHHhccch-HHHHhHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccCceEecCCe-EEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCC
Q 011417 416 EVKDEGYEIEHDGK-LITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 471 (486)
Q Consensus 416 ~~~~~G~~~~~~~~-~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 471 (486)
|.+++||++.|+.| ++|||||||||..++|.|+||.+ +++++++++.|.++|..+
T Consensus 238 QLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~-d~~~~r~~k~F~avpd~~ 293 (306)
T KOG0373|consen 238 QLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSF-DDNLERETKIFSAVPDNS 293 (306)
T ss_pred HHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEe-cccCCccceeeeecCCcc
Confidence 99999999999998 99999999999999999999999 899999999999987644
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1e-73 Score=550.04 Aligned_cols=289 Identities=44% Similarity=0.814 Sum_probs=266.9
Q ss_pred ccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCC
Q 011417 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (486)
Q Consensus 173 l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~ 252 (486)
++.+.++.+++.+.+...++.+++..+|.++.++|.++|+++++..+...+++|+||+||++.+|.++|+..|+|+..++
T Consensus 2 ~~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~ 81 (321)
T cd07420 2 LTKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENP 81 (321)
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccce
Confidence 56788999999999999999999999999999999999999999876666799999999999999999999999876678
Q ss_pred eEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhcc---HHHHHHHHHHhhcccccc
Q 011417 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS---ETFVELFAEVFCCLPLAH 329 (486)
Q Consensus 253 ~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~lp~~~ 329 (486)
|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||..+|+ ..+|+.++++|++||++|
T Consensus 82 ~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaa 161 (321)
T cd07420 82 YVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLAT 161 (321)
T ss_pred EEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceE
Confidence 99999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred eeCCcEEEEeCcccCCCCCCchhhcccccCC-----CCCC----------------------CCcccccccCCCCCCCC-
Q 011417 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPPE----------------------EGLMCELLWSDPQPLPG- 381 (486)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~~----------------------~~~~~~llw~dp~~~~~- 381 (486)
+|++++||||||| ++ ..++++|++|+|+. .++. .+++.|+|||||....+
T Consensus 162 ii~~~i~cvHGGi-~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~ 239 (321)
T cd07420 162 IIDNKILVVHGGI-SD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGC 239 (321)
T ss_pred EEcCCEEEEeCCC-CC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCC
Confidence 9999999999999 55 57899999998842 1111 14678999999997766
Q ss_pred CCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeE
Q 011417 382 RGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNI 461 (486)
Q Consensus 382 ~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~ 461 (486)
+.+++||.|+.||++++++||++|++ ++||||||++++||++.++++|+|||||||||+..+|.||+|.| +++++++|
T Consensus 240 ~~~~~RG~g~~FG~~~~~~Fl~~n~l-~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i-~~~~~~~f 317 (321)
T cd07420 240 KPNTFRGGGCYFGPDVTSKVLQKHGL-SLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKL-GPDLTPHF 317 (321)
T ss_pred CccCCCCCccccCHHHHHHHHHHCCC-cEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEE-CCCCceeE
Confidence 66788999999999999999999999 99999999999999999999999999999999999999999999 88999999
Q ss_pred EEEe
Q 011417 462 VTFA 465 (486)
Q Consensus 462 ~~~~ 465 (486)
++|.
T Consensus 318 ~~~~ 321 (321)
T cd07420 318 VQYQ 321 (321)
T ss_pred EEeC
Confidence 9884
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=4.9e-71 Score=527.41 Aligned_cols=283 Identities=42% Similarity=0.766 Sum_probs=268.6
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
++.+++.+.+...++.+++..+|.++.++++++|+++++..+ +.++||+||++.+|.++|+..++++. +.|+|||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~dL~~ll~~~~~~~~-~~~lfLG 76 (285)
T cd07415 2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSP----VTVCGDIHGQFYDLLELFRVGGDPPD-TNYLFLG 76 (285)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCC----EEEEEeCCCCHHHHHHHHHHcCCCCC-CeEEEEe
Confidence 456777787788899999999999999999999999999765 99999999999999999999988765 4699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccH-HHHHHHHHHhhcccccceeCCcEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
||||||++|+||+.++++||+.+|++|++||||||.+.++..|||..|+..+|+. .+|..+.++|+.||++|+++++++
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~ 156 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIF 156 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 899999999999999999999999
Q ss_pred EEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeeccc
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHE 416 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~ 416 (486)
|||||| +|...++++|++++|+.+++.++++.|+|||||....+|.+++||.|+.||++++++||++||+ ++||||||
T Consensus 157 cvHgGi-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l-~~iiR~He 234 (285)
T cd07415 157 CVHGGL-SPSIDTLDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGL-TLICRAHQ 234 (285)
T ss_pred EEcCCC-CCCcccHHHhhcccCCCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCC-eEEEEcCc
Confidence 999999 8899999999999999998889999999999999888999999999999999999999999999 99999999
Q ss_pred ccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccC
Q 011417 417 VKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVP 468 (486)
Q Consensus 417 ~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~ 468 (486)
++++||++.++++|+|||||||||+..+|+||+|.| +++++++|++|++.|
T Consensus 235 ~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i-~~~~~~~~~~~~~~~ 285 (285)
T cd07415 235 LVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMEL-DEHLKRSFKVFEAAP 285 (285)
T ss_pred cccceEEEecCCcEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeccCC
Confidence 999999999999999999999999999999999999 888999999998653
No 7
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.8e-70 Score=526.58 Aligned_cols=272 Identities=38% Similarity=0.775 Sum_probs=259.6
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011417 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (486)
Q Consensus 190 ~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~ 269 (486)
.++++++..+|.++.+++.++|.++++..+ +.++||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus 31 ~l~~~~i~~l~~~~~~il~~ep~ll~i~~~----i~vvGDIHG~~~dL~~l~~~~g~~~~~-~ylfLGDyVDRG~~s~ev 105 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDIFISQPILLELEAP----LKICGDVHGQYFDLLRLFEYGGYPPES-NYLFLGDYVDRGKQSLET 105 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCceEecCCC----eEEEeecccCHHHHHHHHHhcCCCCcc-eEEEeceecCCCCCcHHH
Confidence 577899999999999999999999999765 999999999999999999999988654 699999999999999999
Q ss_pred HHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCC
Q 011417 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (486)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~ 349 (486)
+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+..+|..++++|.+||++|+|++++||||||| +|...+
T Consensus 106 l~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI-~p~~~~ 184 (320)
T PTZ00480 106 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAALIDEKILCMHGGL-SPELSN 184 (320)
T ss_pred HHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcCHHHHHHHHHHHHhccHhheecCcEEEEcCCc-CcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred chhhcccccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCC
Q 011417 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDG 428 (486)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~ 428 (486)
+++|++++||.+.+.+++++|+|||||... .+|.+++||.|+.||++++++||++||+ ++||||||++++||++.+++
T Consensus 185 l~~i~~i~rp~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l-~~IiR~Hq~v~~G~~~~~~~ 263 (320)
T PTZ00480 185 LEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHEL-DLICRAHQVVEDGYEFFSKR 263 (320)
T ss_pred HHHHhcccCCCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCC-cEEEEcCccccCceEEeCCC
Confidence 999999999998889999999999999875 6899999999999999999999999999 99999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCC
Q 011417 429 KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPH 469 (486)
Q Consensus 429 ~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~ 469 (486)
+|+|||||||||+..+|.||+|.| ++++++.|.+|++.+.
T Consensus 264 ~~iTvFSa~~Y~~~~~N~ga~l~i-~~~~~~~~~~~~p~~~ 303 (320)
T PTZ00480 264 QLVTLFSAPNYCGEFDNAGSMMTI-DESLMCSFQILKPAEQ 303 (320)
T ss_pred cEEEEeCCcccCCCCCccEEEEEE-CCCCcEeEEEecCCcc
Confidence 999999999999999999999999 8999999999976544
No 8
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.7e-72 Score=520.00 Aligned_cols=294 Identities=41% Similarity=0.764 Sum_probs=274.2
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
.+-+.+++...++++++.+..++.++..+|+++++++++..| +.|+||||||+.||+++|+..|-|. +.+|+|||
T Consensus 48 ~~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~AP----iTVCGDIHGQf~DLmKLFEVGG~PA-~t~YLFLG 122 (517)
T KOG0375|consen 48 HDVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAP----ITVCGDIHGQFFDLMKLFEVGGSPA-NTRYLFLG 122 (517)
T ss_pred hHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCC----eeEecccchHHHHHHHHHHccCCcc-cceeEeec
Confidence 556778888899999999999999999999999999999988 9999999999999999999988664 55799999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~ 337 (486)
||||||.+|+||+++|++||+.||+.+++||||||.+.++.++.|..||..||+.++|+++.+.|++||+||+.+.++||
T Consensus 123 DYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse~vYdaCmesFd~LPLAAlmNqQflC 202 (517)
T KOG0375|consen 123 DYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMESFDCLPLAALMNQQFLC 202 (517)
T ss_pred cccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccHHHHHHHHHHhccchHHHHhcCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCC--------CCCCCCCCceEcCHHHHHHHHHHCCCCc
Q 011417 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG--------RGPSKRGVGLSFGADVTKRFLQDNSLGN 409 (486)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~--------~~~~~rg~~~~fg~~~~~~~l~~~~~~~ 409 (486)
||||+ ||.+.+++||++++|+.+||..+.+||||||||.+.-| -+++.||++|.|...++++||+.||| -
T Consensus 203 VHGGl-SPEi~tl~DIr~l~RF~EpPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnL-L 280 (517)
T KOG0375|consen 203 VHGGL-SPEIHTLDDIRKLDRFKEPPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNL-L 280 (517)
T ss_pred ecCCC-CcccccHHHHHhhhhccCCCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCc-h
Confidence 99999 99999999999999999999999999999999986532 25789999999999999999999999 9
Q ss_pred eeeecccccccCceEecC------CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCcccchhhhh
Q 011417 410 LVVRSHEVKDEGYEIEHD------GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFLR 483 (486)
Q Consensus 410 ~iir~H~~~~~G~~~~~~------~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
.|||+||.++.||++..+ +.+|||||||||-+.++|+||||..+++.|+ |.||.++|+|.|.| |||-
T Consensus 281 SIiRAHEAQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNVMN--IRQFncSPHPYWLP-----nFMD 353 (517)
T KOG0375|consen 281 SIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMN--IRQFNCSPHPYWLP-----NFMD 353 (517)
T ss_pred hhhhhhhhhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhcccce--eeccCCCCCCcccc-----chhh
Confidence 999999999999998774 4689999999999999999999999655555 77999999999998 5555
Q ss_pred cc
Q 011417 484 MF 485 (486)
Q Consensus 484 ~~ 485 (486)
.|
T Consensus 354 VF 355 (517)
T KOG0375|consen 354 VF 355 (517)
T ss_pred he
Confidence 44
No 9
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.8e-70 Score=524.46 Aligned_cols=285 Identities=40% Similarity=0.692 Sum_probs=268.2
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
++.+++.+.+...++++++.++|.++.+++.++|+++++..| +.++||+||++.+|.++|+..+.++. ..|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDIHG~~~~L~~l~~~~~~~~~-~~~lfLG 77 (303)
T PTZ00239 3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAP----VNVCGDIHGQFYDLQALFKEGGDIPN-ANYIFIG 77 (303)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEee
Confidence 566777888888899999999999999999999999999765 99999999999999999999887754 4699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccH-HHHHHHHHHhhcccccceeCCcEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE-TFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
||||||++|+||+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+. .+|+.+.++|++||++|+|++++|
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~ 157 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQIL 157 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEE
Confidence 9999999999999999999999999999999999999999999999999999974 799999999999999999999999
Q ss_pred EEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeeccc
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHE 416 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~ 416 (486)
|||||| +|...++++|+.++|+.+++.+++++|+|||||....+|.+++||.|+.||++++++||++||+ ++||||||
T Consensus 158 cvHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l-~~iiR~He 235 (303)
T PTZ00239 158 CVHGGL-SPDMRTIDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDL-TLICRAHQ 235 (303)
T ss_pred EEcCcc-CcccccHhhhccccCCCCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCC-cEEEEcCh
Confidence 999999 8899999999999999998899999999999999888999999999999999999999999999 99999999
Q ss_pred ccccCceEecCC-eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011417 417 VKDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 470 (486)
Q Consensus 417 ~~~~G~~~~~~~-~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 470 (486)
++++||++.+++ +|+|||||||||+..+|+||+|.| +++++++|++|++++..
T Consensus 236 ~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i-~~~~~~~~~~~~~~~~~ 289 (303)
T PTZ00239 236 LVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCL-DENLQQTWKTFKEVPES 289 (303)
T ss_pred hhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEE-CCCCcEeeEEeeCCCcc
Confidence 999999987754 599999999999999999999999 89999999999987653
No 10
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=5.9e-70 Score=525.58 Aligned_cols=288 Identities=42% Similarity=0.759 Sum_probs=269.1
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
++-+++.+.+...++++++.++|.++.++++++|+++++..+ +.++||+||++.+|.++|+..+.++. +.|+|||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~----i~ViGDIHG~~~dL~~l~~~~g~~~~-~~ylFLG 77 (305)
T cd07416 3 IDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAP----VTVCGDIHGQFYDLLKLFEVGGSPAN-TRYLFLG 77 (305)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCC----EEEEEeCCCCHHHHHHHHHhcCCCCC-ceEEEEC
Confidence 456778888888899999999999999999999999999865 99999999999999999999888764 5799999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~ 337 (486)
||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||..|+..+|+.++|..+.++|++||++++++++++|
T Consensus 78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPlaaii~~~i~~ 157 (305)
T cd07416 78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMEAFDCLPLAALMNQQFLC 157 (305)
T ss_pred CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccHHHHHHHHHHHhhccceeEEcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCC-------CCCC-CCCCCceEcCHHHHHHHHHHCCCCc
Q 011417 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLGN 409 (486)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~~~~fg~~~~~~~l~~~~~~~ 409 (486)
||||| +|...++++|++++|+.+++..++++|+|||||.... +|.+ ++||.|+.||++++++||++||+ +
T Consensus 158 vHGGi-~p~~~~l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l-~ 235 (305)
T cd07416 158 VHGGL-SPELKTLDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNL-L 235 (305)
T ss_pred EcCCC-CcccccHHHhcccCCCCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCC-e
Confidence 99999 8899999999999999988889999999999997643 3554 59999999999999999999999 9
Q ss_pred eeeecccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCC
Q 011417 410 LVVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKP 474 (486)
Q Consensus 410 ~iir~H~~~~~G~~~~~~~------~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (486)
+||||||++++||++.+++ +|||||||||||+..+|+||+|.| +++ .++|++|.++|+|.+.|
T Consensus 236 ~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i-~~~-~~~~~~~~~~~~~~~~~ 304 (305)
T cd07416 236 SIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLP 304 (305)
T ss_pred EEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEE-cCC-cceEEEecCCCCCCCCC
Confidence 9999999999999999886 999999999999999999999999 555 47899999999999876
No 11
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=4.6e-69 Score=524.36 Aligned_cols=302 Identities=42% Similarity=0.760 Sum_probs=272.0
Q ss_pred ccHHHHHHHHHHHhcc----------cchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHH
Q 011417 173 ITLDFVKKMMDDFKNQ----------KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (486)
Q Consensus 173 l~~~~l~~l~e~l~~~----------~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~ 242 (486)
++.+.++.++..++.. ..++.+++..+|.++.++|.++|+++++..+...++.|+||+||++.+|.++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~ 86 (377)
T cd07418 7 LTNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLE 86 (377)
T ss_pred cCHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHH
Confidence 6888999999998766 336788999999999999999999999985545579999999999999999999
Q ss_pred HcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccH---HHHHHHH
Q 011417 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFA 319 (486)
Q Consensus 243 ~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~---~~~~~~~ 319 (486)
..++++....|+|||||||||++|+||+.+|+.+|+.+|++|++||||||.+.++..|||..|+..+|+. .+|+.+.
T Consensus 87 ~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~ 166 (377)
T cd07418 87 DAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCL 166 (377)
T ss_pred HhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHH
Confidence 9998876667999999999999999999999999999999999999999999999999999999999964 7999999
Q ss_pred HHhhcccccceeCCcEEEEeCccc--------------------------CCCCCCchhhcccccC-CCCCCCC---ccc
Q 011417 320 EVFCCLPLAHVLNQKVFVVHGGLF--------------------------SVDGVKLSDIKTIDRF-CEPPEEG---LMC 369 (486)
Q Consensus 320 ~~~~~lp~~~~i~~~~~~vHgGi~--------------------------~~~~~~~~~i~~~~r~-~~~~~~~---~~~ 369 (486)
++|++||++++|++++|||||||| ++.+.++++|++++|+ .+++..+ +++
T Consensus 167 ~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~ 246 (377)
T cd07418 167 GCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPG 246 (377)
T ss_pred HHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccce
Confidence 999999999999999999999994 3445789999999997 4666554 578
Q ss_pred ccccCCCCCCCCCCCC-CCCCceEcCHHHHHHHHHHCCCCceeeecccc------------cccCceEecC---CeEEEE
Q 011417 370 ELLWSDPQPLPGRGPS-KRGVGLSFGADVTKRFLQDNSLGNLVVRSHEV------------KDEGYEIEHD---GKLITV 433 (486)
Q Consensus 370 ~llw~dp~~~~~~~~~-~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~------------~~~G~~~~~~---~~~~ti 433 (486)
|||||||....++.++ .||.|+.||++++++||++|++ ++||||||+ +++||++.++ ++|+||
T Consensus 247 dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~FL~~n~l-~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTv 325 (377)
T cd07418 247 DVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEEFLEKNNL-KLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITL 325 (377)
T ss_pred eeEeeCCccCCCCCccCCCCCccccCHHHHHHHHHHcCC-cEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEE
Confidence 9999999988887665 7999999999999999999999 999999996 6799999887 999999
Q ss_pred ecCCCCC------CCCCCeEEEEEEecCC-CceeEEEEecc-CCCCCCCc
Q 011417 434 FSAPNYC------DQMGNKGAFIRFEAPT-LKPNIVTFAAV-PHPDVKPM 475 (486)
Q Consensus 434 fsa~~y~------~~~~n~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 475 (486)
||||||| +.++|+||+++|+.++ .+++|.+|+++ |+|..-|+
T Consensus 326 FSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T cd07418 326 FSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVKPRPKANPY 375 (377)
T ss_pred ecCCccccccccccccCcceEEEEEecCCCCCccceEeeccCCCCCCCcC
Confidence 9999999 5789999999996544 58999999998 88887765
No 12
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-69 Score=522.88 Aligned_cols=269 Identities=41% Similarity=0.797 Sum_probs=260.0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcC-CCCCCCCeEEcccccCCCCChHHH
Q 011417 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSVEV 269 (486)
Q Consensus 191 l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~-~~~~~~~~~~lGd~vdrG~~~~e~ 269 (486)
+++.++.++|..+.+++..+|.+++++.| +.++||+|||+.||+++|...| +|++. +|+|||||||||++|+|+
T Consensus 32 l~~~ei~~l~~~~~~if~~~~~l~e~~aP----V~i~GDiHGq~~DLlrlf~~~g~~pp~~-~ylFLGDYVDRG~~slE~ 106 (331)
T KOG0374|consen 32 LSKSEIIKLCDKAREIFLSQPTLLELSAP----VKIVGDIHGQFGDLLRLFDLLGSFPPDQ-NYVFLGDYVDRGKQSLET 106 (331)
T ss_pred ccHHHHHHHHHHHHHHhcCCCceeecCCC----EEEEccCcCCHHHHHHHHHhcCCCCCcc-cEEEecccccCCccceEE
Confidence 67789999999999999999999999987 9999999999999999999999 88765 699999999999999999
Q ss_pred HHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhcc-HHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCC
Q 011417 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 348 (486)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~ 348 (486)
+.+|+++|+.||++|++||||||.+.++..|||++||.++|+ ..+|..|++.|.+||++|+|+++++|+|||| ||.+.
T Consensus 107 i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGl-sp~l~ 185 (331)
T KOG0374|consen 107 ICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGL-SPHLK 185 (331)
T ss_pred eehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCC-Chhhc
Confidence 999999999999999999999999999999999999999999 6999999999999999999999999999999 99999
Q ss_pred CchhhcccccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecC
Q 011417 349 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHD 427 (486)
Q Consensus 349 ~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~ 427 (486)
++++|+.|.||.++++.++++|||||||... .||.++.||.++.||++++++||+++++ ++||||||++.+||+++.+
T Consensus 186 ~~~~i~~i~rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~l-dlivRaHqvv~dGyeffa~ 264 (331)
T KOG0374|consen 186 SLDQIRAIPRPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDL-DLIVRAHQVVEDGYEFFAG 264 (331)
T ss_pred ChHHHhhccCCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCc-ceEEEcCccccccceEecC
Confidence 9999999999999999999999999999987 6999999999999999999999999999 9999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecc
Q 011417 428 GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 467 (486)
Q Consensus 428 ~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 467 (486)
+|++||||||+|||.+.|.||+|.| ++++.+.|....+.
T Consensus 265 r~lvTIFSAP~Ycg~~~n~gavm~V-d~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 265 RKLVTIFSAPNYCGEFDNAGAVMRV-DKNLKCSFVILRPE 303 (331)
T ss_pred ceEEEEecCchhccccCCceEEEEE-CCCCeEEEEEeccc
Confidence 9999999999999999999999999 99999999888773
No 13
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=4.5e-69 Score=514.77 Aligned_cols=269 Identities=39% Similarity=0.773 Sum_probs=256.9
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011417 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (486)
Q Consensus 190 ~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~ 269 (486)
.++.+++..+|.++.+++.++|+++++..| +.++||+||++.+|.++|+..++++.. .|+|||||||||++|+||
T Consensus 24 ~i~~~~i~~l~~~~~~il~~e~~ll~i~~p----~~ViGDIHG~~~~L~~l~~~~~~~~~~-~~lfLGDyVDRG~~s~ev 98 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIFMSQPMLLEIRPP----VRVCGDTHGQYYDLLRIFEKCGFPPYS-NYLFLGDYVDRGKHSVET 98 (294)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeccCC----ceeeccCCCCHHHHHHHHHHcCCCCcc-cEEEeeeEecCCCCHHHH
Confidence 467789999999999999999999999876 999999999999999999999987654 599999999999999999
Q ss_pred HHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCC
Q 011417 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (486)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~ 349 (486)
+.+++++|+.+|.+|++||||||.+.++..|||.+|+..+|+..+|+.+.++|+.||++++++++++|||||| +|...+
T Consensus 99 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaaii~~~il~vHgGi-~p~~~~ 177 (294)
T PTZ00244 99 ITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGL-SPDLTS 177 (294)
T ss_pred HHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhhHHHHHHHHHHHHhCchheEecCeeEEEcCCC-CchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 888889
Q ss_pred chhhcccccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCC
Q 011417 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDG 428 (486)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~ 428 (486)
+++|++++||.+.+.+++++|+|||||... .+|.+++||.|+.||++++++||++||+ ++||||||++++||++.+++
T Consensus 178 l~~i~~i~rp~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l-~~iiR~Hq~~~~G~~~~~~~ 256 (294)
T PTZ00244 178 LASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDM-DLIVRAHQVMERGYGFFASR 256 (294)
T ss_pred HHHhhhhccccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCC-cEEEEcCccccCceEEcCCC
Confidence 999999999998888999999999999874 6899999999999999999999999999 99999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011417 429 KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 429 ~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 466 (486)
+|+|||||||||+..+|+||+|.| +++++++|++|.+
T Consensus 257 ~~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~f~~~~~ 293 (294)
T PTZ00244 257 QLVTVFSAPNYCGEFDNDAAVMNI-DDKLQCSFLIIPA 293 (294)
T ss_pred eEEEEeCCccccCCCCceEEEEEE-CCCCcEeEEEeec
Confidence 999999999999999999999999 8899999988865
No 14
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=4.9e-69 Score=515.63 Aligned_cols=269 Identities=41% Similarity=0.827 Sum_probs=257.0
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH
Q 011417 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV 269 (486)
Q Consensus 190 ~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~ 269 (486)
.++++++.++|.++.++++++|+++++..+ +.++||+||++.+|.++|+..++++. +.|+|||||||||++|+|+
T Consensus 22 ~~~~~~i~~l~~~~~~il~~ep~~l~i~~~----i~viGDIHG~~~~L~~l~~~~~~~~~-~~~lfLGDyVDRG~~s~e~ 96 (293)
T cd07414 22 QLTEAEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE-SNYLFLGDYVDRGKQSLET 96 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEecCCc----eEEEEecCCCHHHHHHHHHhcCCCCc-ceEEEEeeEecCCCCcHHH
Confidence 477889999999999999999999999765 99999999999999999999998765 4699999999999999999
Q ss_pred HHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCC
Q 011417 270 ILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVK 349 (486)
Q Consensus 270 l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~ 349 (486)
+.+|+++|+.+|.+|++||||||.+.++..|||..|+..+|+..+|..+.++|++||++|++++++||||||+ +|...+
T Consensus 97 i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi-~p~~~~ 175 (293)
T cd07414 97 ICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGL-SPDLQS 175 (293)
T ss_pred HHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhhHHHHHHHHHHHHHhHHHHhhCCcEEEEccCC-CcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred chhhcccccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCC
Q 011417 350 LSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDG 428 (486)
Q Consensus 350 ~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~ 428 (486)
+++|+.++|+.+.+..++++|+|||||... .+|.+++||.|+.||++++++||++||+ ++||||||++++||++.+++
T Consensus 176 l~~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l-~~iiR~He~~~~G~~~~~~~ 254 (293)
T cd07414 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDL-DLICRAHQVVEDGYEFFAKR 254 (293)
T ss_pred HHHHhcccCCCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCC-eEEEECCccccCeEEEeCCC
Confidence 999999999998888999999999999865 6899999999999999999999999999 99999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011417 429 KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 429 ~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 466 (486)
+|+||||||+||+..+|+||+|.| +++++++|.+|++
T Consensus 255 ~~iTvfSa~~Y~~~~~N~~a~l~i-~~~~~~~~~~~~~ 291 (293)
T cd07414 255 QLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKP 291 (293)
T ss_pred cEEEEecCCcccCCCCceEEEEEE-CCCCcEEEEEecC
Confidence 999999999999999999999999 8899999998863
No 15
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.1e-67 Score=503.30 Aligned_cols=267 Identities=48% Similarity=0.892 Sum_probs=254.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHH
Q 011417 192 HKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL 271 (486)
Q Consensus 192 ~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~ 271 (486)
+++++..+|.++.++++++|+++++..+ +.++||+||++.+|.++|+..+.++ .+.|+|||||||||++|+||+.
T Consensus 2 ~~~~i~~l~~~~~~il~~e~~~~~i~~~----i~vvGDiHG~~~~l~~ll~~~~~~~-~~~~vfLGD~VDrG~~s~e~l~ 76 (271)
T smart00156 2 YAEEILELLREVKEIFRQEPNLVEVSAP----VTVCGDIHGQFDDLLRLFDLNGPPP-DTNYVFLGDYVDRGPFSIEVIL 76 (271)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEeCCC----EEEEEeCcCCHHHHHHHHHHcCCCC-CceEEEeCCccCCCCChHHHHH
Confidence 4578999999999999999999999765 9999999999999999999988765 4579999999999999999999
Q ss_pred HHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCch
Q 011417 272 TLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLS 351 (486)
Q Consensus 272 ~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~ 351 (486)
+++++|+.+|++|++||||||.+.++..|||..|+..+|+..+|+.+.++|++||++++++++++|||||| +|...+++
T Consensus 77 ~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi-~~~~~~l~ 155 (271)
T smart00156 77 LLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGL-SPDLTTLD 155 (271)
T ss_pred HHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCC-CCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 88999999
Q ss_pred hhcccccCCCCCCCCcccccccCCCCC-CCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeE
Q 011417 352 DIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKL 430 (486)
Q Consensus 352 ~i~~~~r~~~~~~~~~~~~llw~dp~~-~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~ 430 (486)
+|++++|+.+.+.+++++|+|||||.. ..+|.+++||.|+.||++++++||++||+ ++||||||++++||++.++++|
T Consensus 156 ~i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l-~~iiR~He~~~~G~~~~~~~~~ 234 (271)
T smart00156 156 DIRKLKRPQEPPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNL-KLIIRAHQVVDDGYEFFHDRKL 234 (271)
T ss_pred HHhcccCCCCCCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCC-eEEEecCcccCCcEEEecCCcE
Confidence 999999999888999999999999964 56899999999999999999999999999 9999999999999999999999
Q ss_pred EEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011417 431 ITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 431 ~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 466 (486)
+|||||||||+..+|+||++.| +++++++|.+|++
T Consensus 235 ~TvfSa~~y~~~~~n~~a~~~i-~~~~~~~~~~~~~ 269 (271)
T smart00156 235 VTIFSAPNYCGRFGNKAAVLKV-DKDLKLSFEQFKP 269 (271)
T ss_pred EEEECCcccccCCCceEEEEEE-CCCCcEEEEEecC
Confidence 9999999999988999999999 8899999999864
No 16
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-67 Score=466.14 Aligned_cols=287 Identities=38% Similarity=0.690 Sum_probs=275.7
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEE
Q 011417 176 DFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLF 255 (486)
Q Consensus 176 ~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~ 255 (486)
..++..++.+..++.+.+.++..+|..++++|.++.++..+..| +.++||+|||+.+|+++|+..|..+++ +|+|
T Consensus 18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~p----vtvcGDvHGqf~dl~ELfkiGG~~pdt-nylf 92 (319)
T KOG0371|consen 18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCP----VTVCGDVHGQFHDLIELFKIGGLAPDT-NYLF 92 (319)
T ss_pred cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccc----eEEecCcchhHHHHHHHHHccCCCCCc-ceee
Confidence 34677888899999999999999999999999999999999887 999999999999999999998888766 5999
Q ss_pred cccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhc-cHHHHHHHHHHhhcccccceeCCc
Q 011417 256 NGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL-SETFVELFAEVFCCLPLAHVLNQK 334 (486)
Q Consensus 256 lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~lp~~~~i~~~ 334 (486)
+|||||||++|+|++.+|.++|++||++|.+||||||++.+++.|||++||.+|| ...+|..|.+.|+.+|+.|.|+++
T Consensus 93 mGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ 172 (319)
T KOG0371|consen 93 MGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESK 172 (319)
T ss_pred eeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999 568999999999999999999999
Q ss_pred EEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeec
Q 011417 335 VFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRS 414 (486)
Q Consensus 335 ~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~ 414 (486)
|||+|||+ ||.+.+++.++.++|..+.|.++.+||||||||....||..++||+|+.||.+..++|-.+||+ ++|-|+
T Consensus 173 ifc~HGgL-spsi~tld~~r~~dr~~evphegpmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~l-slisRa 250 (319)
T KOG0371|consen 173 IFCLHGGL-SPSIDTLDLIRLLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGL-SLISRA 250 (319)
T ss_pred eeeccCCc-CcccchHHHHHHHHHhhcccCCCChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCc-hHhHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011417 415 HEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 470 (486)
Q Consensus 415 H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 470 (486)
||.+++||.|.+...++|||||||||..++|.+|++.+ +++.+..|.||+++|++
T Consensus 251 hqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~-d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 251 HQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMER-DDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHHHhcccceeeecceeEEccCCchhhccccHHHHhhh-hhccCcceEEecCCccc
Confidence 99999999999999999999999999999999999999 99999999999998754
No 17
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1.2e-64 Score=491.18 Aligned_cols=269 Identities=36% Similarity=0.645 Sum_probs=248.9
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCC-------CCCeEEcccccCC
Q 011417 190 CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE-------ENPYLFNGDFVDR 262 (486)
Q Consensus 190 ~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~-------~~~~~~lGd~vdr 262 (486)
.++++++..+|.++.++++++|.++++..+ +.++||+||++.+|.++|+..++++. ...|+||||||||
T Consensus 20 ~~~~~~i~~l~~~~~~il~~e~~~~~i~~~----~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDR 95 (311)
T cd07419 20 FFNWNEILELCDAAEDIFKQEPMVLRLRAP----IKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDR 95 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEeeCCC----EEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCC
Confidence 356788999999999999999999999765 99999999999999999999888754 2469999999999
Q ss_pred CCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccH------HHHHHHHHHhhcccccceeCCcEE
Q 011417 263 GSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE------TFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 263 G~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
|++|+||+.+|++||+.+|++|++||||||.+.++..|||..++..+++. .+|..++++|++||++++++++++
T Consensus 96 Gp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l 175 (311)
T cd07419 96 GSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKIL 175 (311)
T ss_pred CCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEE
Confidence 99999999999999999999999999999999999999999999988864 699999999999999999999999
Q ss_pred EEeCcccCCCCCCchhhcccccCC-CCCCCCcccccccCCCCCC---CCCCCCC---CCCc--eEcCHHHHHHHHHHCCC
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFC-EPPEEGLMCELLWSDPQPL---PGRGPSK---RGVG--LSFGADVTKRFLQDNSL 407 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~-~~~~~~~~~~llw~dp~~~---~~~~~~~---rg~~--~~fg~~~~~~~l~~~~~ 407 (486)
|||||| +|...++++|+.+.|+. +.+.+++++|+|||||... .++.+++ ||.| +.||++++++||++||+
T Consensus 176 ~vHgGi-~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l 254 (311)
T cd07419 176 CMHGGI-GRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDL 254 (311)
T ss_pred EEccCC-CCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCC
Confidence 999999 88999999999999996 5566789999999999875 3666666 9998 79999999999999999
Q ss_pred CceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEe
Q 011417 408 GNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFA 465 (486)
Q Consensus 408 ~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~ 465 (486)
++||||||++++||++.++++|+||||||+||+.++|.||+++| ++++++.++.++
T Consensus 255 -~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i-~~~~~~~~~~~~ 310 (311)
T cd07419 255 -QMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVL-GRDLTIIPKLIH 310 (311)
T ss_pred -eEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEE-CCCCcEeEEEeC
Confidence 99999999999999999999999999999999999999999999 889998888775
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-65 Score=485.67 Aligned_cols=315 Identities=40% Similarity=0.736 Sum_probs=288.4
Q ss_pred cccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCCh
Q 011417 155 QSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQF 234 (486)
Q Consensus 155 ~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~ 234 (486)
..++....|.++.+... ++...++.+++.++..+.+++.++..++.++++.|+..|++..+....+..+.++||+||++
T Consensus 99 ~sidv~d~y~Gp~ls~P-l~~~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGkl 177 (631)
T KOG0377|consen 99 TSIDVPDSYNGPKLSLP-LRKNHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKL 177 (631)
T ss_pred cceecCccCCCcccccC-cCchHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccc
Confidence 35666677888988886 88899999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhc---c
Q 011417 235 YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL---S 311 (486)
Q Consensus 235 ~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~---~ 311 (486)
+||.-+|-+.|+|+..++|||.||+||||.+|+|||.+|+++-+.+|+.|++-|||||+..||..|||..|+..|| +
T Consensus 178 DDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~ 257 (631)
T KOG0377|consen 178 DDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHG 257 (631)
T ss_pred cceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCC-----CCC-----------------CCCccc
Q 011417 312 ETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC-----EPP-----------------EEGLMC 369 (486)
Q Consensus 312 ~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~-----~~~-----------------~~~~~~ 369 (486)
..+.+.+.++|+|||++.+|+++||+||||| | +..+++-+.+|+|.. .|| ++..+.
T Consensus 258 k~Ilr~leevy~WLPi~tiid~~ilvvHGGi-S-d~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~ 335 (631)
T KOG0377|consen 258 KRILRFLEEVYRWLPIGTIIDSRILVVHGGI-S-DSTDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIF 335 (631)
T ss_pred cHHHHHHHHHHHhcchhhhcccceEEEecCc-c-cchhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHH
Confidence 7899999999999999999999999999999 5 566788888887751 111 234567
Q ss_pred ccccCCCCCCCC-CCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEE
Q 011417 370 ELLWSDPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGA 448 (486)
Q Consensus 370 ~llw~dp~~~~~-~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a 448 (486)
|+|||||....| +.+.-||.|++||+|++..||++.++ +++||+|||.++||+++||+||+|||||+||....+|+||
T Consensus 336 DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l-~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGA 414 (631)
T KOG0377|consen 336 DIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRL-SYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGA 414 (631)
T ss_pred HHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCc-eeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCce
Confidence 999999999887 45678999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeEEEEeccCCCCCCC
Q 011417 449 FIRFEAPTLKPNIVTFAAVPHPDVKP 474 (486)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (486)
++.+ .+.+.|.|+||.+.......+
T Consensus 415 Yikl-~~~~~PhfvQY~a~k~t~~~t 439 (631)
T KOG0377|consen 415 YIKL-GNQLTPHFVQYQAAKQTKRLT 439 (631)
T ss_pred EEEe-CCCCCchHHHHHhhhhhhhhh
Confidence 9999 999999999999865544443
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=8.9e-33 Score=259.76 Aligned_cols=213 Identities=49% Similarity=0.760 Sum_probs=174.3
Q ss_pred EEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChh
Q 011417 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304 (486)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~ 304 (486)
+++||+||++.+|.++++..+.++ .+.++|+|||||||+.+.+++.+++.++.. |.++++||||||.+.++...++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~-~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~ 78 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPP-NDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYD 78 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCC-CCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcc
Confidence 479999999999999999988754 567999999999999999999999999887 899999999999999887766654
Q ss_pred hh---------hhhccHHHHHHHHHHhhcccccceeCC-cEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccC
Q 011417 305 EV---------RSKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 374 (486)
Q Consensus 305 e~---------~~~~~~~~~~~~~~~~~~lp~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~ 374 (486)
+. .......++..+.+++..||+++.++. +++|||||+ +|.....+.+. ..+.+....+++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~-~~~~~~~~~~~------~~~~~~~~~~~lw~ 151 (225)
T cd00144 79 EDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGL-SPGLPLEEQIK------EEPEDQLPEDLLWS 151 (225)
T ss_pred hhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCC-CCccchHHhhh------cCcccccceeeeec
Confidence 42 222355678888999999999999987 999999999 55543333332 22344567899999
Q ss_pred CCCCCCC-CCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 011417 375 DPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 451 (486)
Q Consensus 375 dp~~~~~-~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~ 451 (486)
+|..... ...+.|+. |+++.+.|+..++. +.|||||+++..|+....+++++||+|++.|++..+|..+++.
T Consensus 152 r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 152 DPLELPGGFGSSRRGG----GPDAVEWFLKKNGL-KLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred CCCCCCCCCcCCCCCC----CHHHHHHHHHHCCC-eEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence 9986543 33344444 89999999999999 9999999999999877778999999999999877778777654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.92 E-value=2.8e-24 Score=197.88 Aligned_cols=176 Identities=20% Similarity=0.301 Sum_probs=129.1
Q ss_pred EEEccCCCChHHHHHHHHHcCC-------CCCCCCeEEcccccCCCCChHHHHHHHHhchhc---CCCeEEEeccCCccc
Q 011417 225 TVCGDVHGQFYDLLNIFELNGL-------PSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---CPSAIYLSRGNHESK 294 (486)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~~~-------~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~---~p~~v~~lrGNHE~~ 294 (486)
+++||+||+++.|.++++..+. ....+.++++||+||||+++.+|+.+|+.|+.. .|.+|++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4799999999999999998764 234668999999999999999999999999743 467899999999999
Q ss_pred ccccccCChhh-hhhhcc------HHHH---HHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCC
Q 011417 295 SMNKIYGFEGE-VRSKLS------ETFV---ELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364 (486)
Q Consensus 295 ~~~~~~~~~~e-~~~~~~------~~~~---~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 364 (486)
.+...+.+... ...... ..++ ..+.+|++.+|+...++ ++++||||+ +|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~-~~------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGL-GP------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCc-HH-------------------
Confidence 98754433211 111110 1111 23468999999999887 588899998 32
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecC
Q 011417 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSA 436 (486)
Q Consensus 365 ~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa 436 (486)
+|++.-... ... ..-++..+.++|+.++. ++||+||+.++.|....++||||+|.+.
T Consensus 140 -------~w~r~y~~~---~~~----~~~~~~~~~~~l~~~~~-~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYSKE---TSD----KECAAAHLDKVLERLGA-KRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhhhh---hhh----ccchHHHHHHHHHHcCC-CeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 222110000 000 00022578899999999 9999999999888876889999999974
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.90 E-value=8e-23 Score=193.38 Aligned_cols=196 Identities=21% Similarity=0.345 Sum_probs=127.7
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCC--------CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLP--------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~--------~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++.++|||||+++.|.+++++.++. +..+.++|+||||||||+|.|||.+++.+. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 4899999999999999999997764 345679999999999999999999998885 566899999999998
Q ss_pred ccccccCCh-------hhhhhhc-------cHHHHHHHHHHhhcccccceeC-CcEEEEeCcccCCCCCCchhhcccccC
Q 011417 295 SMNKIYGFE-------GEVRSKL-------SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIKTIDRF 359 (486)
Q Consensus 295 ~~~~~~~~~-------~e~~~~~-------~~~~~~~~~~~~~~lp~~~~i~-~~~~~vHgGi~~~~~~~~~~i~~~~r~ 359 (486)
.++...+-. .+....+ ...+.+.+.++|+.||+..+++ ++++|||||+ .|... .++
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~-~~~~~--------~~~ 150 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGI-RQDYI--------GRQ 150 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCC-ChHhc--------ccc
Confidence 776443210 0111111 1346778899999999998774 6799999999 54321 111
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCC-CCCCceEcCHHHHHHHHHH-CCCCceeeecccccccCceEecCCeEEEEecCC
Q 011417 360 CEPPEEGLMCELLWSDPQPLPGRGPS-KRGVGLSFGADVTKRFLQD-NSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAP 437 (486)
Q Consensus 360 ~~~~~~~~~~~llw~dp~~~~~~~~~-~rg~~~~fg~~~~~~~l~~-~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~ 437 (486)
. ..+...++|++-......... .|- .| .+. .+- ..||-||+++..... .+..+.|-+..
T Consensus 151 ~----~~~~~~~l~~~~~~~~~~~~~~~~~---~~--------~~~~~g~-~~vV~GHtp~~~~~~---~~~~i~IDtGa 211 (245)
T PRK13625 151 D----KKVQTFVLYGDITGEKHPDGSPVRR---DW--------AKEYKGT-AWIVYGHTPVKEPRF---VNHTVNIDTGC 211 (245)
T ss_pred h----hhhhhHHhhccccCCcCCCCCeeee---cc--------chhcCCC-cEEEECCCCCcccee---cCCeEEEECcC
Confidence 0 012234556532111000000 000 01 111 255 789999999865432 24567788776
Q ss_pred CCCCCCCCeEEEEEE
Q 011417 438 NYCDQMGNKGAFIRF 452 (486)
Q Consensus 438 ~y~~~~~n~~a~~~~ 452 (486)
-| ++.=+++.+
T Consensus 212 ~~----gG~Ltal~l 222 (245)
T PRK13625 212 VF----GGRLTALRY 222 (245)
T ss_pred cc----CCEEEEEEC
Confidence 44 344455666
No 22
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.86 E-value=4.3e-21 Score=182.82 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=139.0
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
+++++|||||+++.|.+++++.++.+..+.++|+||+|||||+|.||+.++..+ +.++++++||||.+.+...+|+
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g~ 77 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAGI 77 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcCC
Confidence 489999999999999999999877656678999999999999999999999987 4578999999999988776665
Q ss_pred hhh-----hhhhccHHHHHHHHHHhhccccccee-CCcEEEEeCcccCCCCCCchhhcccccC-----CCCCCCCccccc
Q 011417 303 EGE-----VRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPEEGLMCEL 371 (486)
Q Consensus 303 ~~e-----~~~~~~~~~~~~~~~~~~~lp~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~-----~~~~~~~~~~~l 371 (486)
... ..........+...+|++.+|+...+ ++++++||||+ +|.. ++++.....+. ..+....++..+
T Consensus 78 ~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi-~p~~-~~~~~~~~a~eve~~l~~~~~~~~~~~m 155 (275)
T PRK00166 78 KRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGI-PPQW-DLATALALAREVEAVLRSDDYRDFLANM 155 (275)
T ss_pred ccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 321 11111112345577999999998886 56899999999 5543 33332222211 111122345556
Q ss_pred ccCCCCCCCCCCCCCCCCc-eEcCHHHHH--HHHHH-----------------------------CCCCceeeecccccc
Q 011417 372 LWSDPQPLPGRGPSKRGVG-LSFGADVTK--RFLQD-----------------------------NSLGNLVVRSHEVKD 419 (486)
Q Consensus 372 lw~dp~~~~~~~~~~rg~~-~~fg~~~~~--~~l~~-----------------------------~~~~~~iir~H~~~~ 419 (486)
.|+.|.. |.+.-.|.. ..|.-++.. +||.. ..- ..||-||.+..
T Consensus 156 y~~~p~~---W~~~l~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~~~~~~~~pWf~~~~~~~~~-~~i~fGHwa~l 231 (275)
T PRK00166 156 YGNEPDR---WSPDLTGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPDEAPAGLKPWFEVPGRKTRD-YTIVFGHWAAL 231 (275)
T ss_pred cCCCcCc---cCcccCchHHHHHHHHHHhhhhcccCCCceeecccCCcccCCcCCCCCccCcCccCCC-CeEEEecCccc
Confidence 6655631 222222211 000000000 00110 123 57999999987
Q ss_pred cCceEecCCeEEEEecCCCCCCCCCCeEEEEEE
Q 011417 420 EGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRF 452 (486)
Q Consensus 420 ~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~ 452 (486)
.|... .+.++.+-+.--+ +++=..+.+
T Consensus 232 ~G~~~--~~~~~~LDtGcvw----gg~Lta~~l 258 (275)
T PRK00166 232 EGLTT--PPNIIALDTGCVW----GGKLTALRL 258 (275)
T ss_pred CCccC--CCCeEEeeccccc----CCeEEEEEe
Confidence 78865 5668888887654 455566777
No 23
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.86 E-value=7e-22 Score=186.16 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=108.0
Q ss_pred eEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCCh
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~ 303 (486)
++++|||||+++.|.+++++.++.+..+.++|+||+|||||+|+||+.+|+.++ .++++++||||.+.+...+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 478999999999999999998877667889999999999999999999999986 5789999999999887766643
Q ss_pred hhhh-----hhccHHHHHHHHHHhhcccccceeCC-cEEEEeCcccCCCCCCchhhcccccC-----CCCCCCCcccccc
Q 011417 304 GEVR-----SKLSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRF-----CEPPEEGLMCELL 372 (486)
Q Consensus 304 ~e~~-----~~~~~~~~~~~~~~~~~lp~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~-----~~~~~~~~~~~ll 372 (486)
..-. ........+...+|++++|+...+++ ++++||||| +|.. ++++.....+. ..+....++..+.
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi-~p~w-~~~~~~~~a~eve~~l~~~~~~~~~~~my 154 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGI-PPQW-SIEQALKLAREVEAALRGPNYREFLKNMY 154 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCC-CCCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHhh
Confidence 2111 00111223567799999999998875 899999999 6654 44444433332 1122223445555
Q ss_pred cCCC
Q 011417 373 WSDP 376 (486)
Q Consensus 373 w~dp 376 (486)
|+.|
T Consensus 155 ~~~p 158 (257)
T cd07422 155 GNEP 158 (257)
T ss_pred CCCC
Confidence 5556
No 24
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.86 E-value=5.9e-21 Score=177.77 Aligned_cols=116 Identities=25% Similarity=0.299 Sum_probs=89.5
Q ss_pred eEEEccCCCChHHHHHHHHHcCCC-------CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccc
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLP-------SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~-------~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (486)
+.++|||||+++.|.+++++.+.. +..+.+|||||||||||+|.|||.+|+.++. +.++++|+||||.+.+
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll 78 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAI 78 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHH
Confidence 368999999999999999987654 1345799999999999999999999999863 4589999999999887
Q ss_pred ccccCC--hh---------------hhhhhc--cHHHHHHHHHHhhcccccceeCCcEEEEeCcc
Q 011417 297 NKIYGF--EG---------------EVRSKL--SETFVELFAEVFCCLPLAHVLNQKVFVVHGGL 342 (486)
Q Consensus 297 ~~~~~~--~~---------------e~~~~~--~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi 342 (486)
....+- .. +....+ ..+..+...+|++.||+....+ ++++||||+
T Consensus 79 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~ 142 (222)
T cd07413 79 AWHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLG-GVRVVHACW 142 (222)
T ss_pred HhhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEEC-CEEEEECCc
Confidence 533221 00 111111 1234567889999999998875 699999998
No 25
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.85 E-value=1.4e-20 Score=177.18 Aligned_cols=118 Identities=36% Similarity=0.532 Sum_probs=94.2
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCC---------CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPS---------EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~---------~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
++.++|||||++..|..+|+..++.+ ..+.++||||+||||++|.||+.+|+.++. +..+++||||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~--~~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVA--AGAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhh--CCcEEEEECCcHH
Confidence 58999999999999999999987653 245799999999999999999999999874 4578999999999
Q ss_pred ccccccc--------CChhhhhhhc---cHHHHHHHHHHhhcccccceeC-CcEEEEeCccc
Q 011417 294 KSMNKIY--------GFEGEVRSKL---SETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLF 343 (486)
Q Consensus 294 ~~~~~~~--------~~~~e~~~~~---~~~~~~~~~~~~~~lp~~~~i~-~~~~~vHgGi~ 343 (486)
+.++... |+.. ....+ ...+.+.+.+||+.||+...++ ++++|||||++
T Consensus 80 ~l~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~ 140 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEE-TVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIK 140 (234)
T ss_pred HHHHHhcCCCccccCcccc-hHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCC
Confidence 8876432 2221 11222 2456678889999999988775 57999999983
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.84 E-value=5.4e-21 Score=179.82 Aligned_cols=126 Identities=22% Similarity=0.334 Sum_probs=100.8
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
.++++|||||+++.|.++|++.++.+..+.++|+||+|||||+|+||+.++.++. +++++++||||.+.+...+|+
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 4899999999999999999999877777789999999999999999999999884 567889999999999877775
Q ss_pred hh-----hhhhhccHHHHHHHHHHhhcccccceeC-CcEEEEeCcccCCCCCCchhhc
Q 011417 303 EG-----EVRSKLSETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGVKLSDIK 354 (486)
Q Consensus 303 ~~-----e~~~~~~~~~~~~~~~~~~~lp~~~~i~-~~~~~vHgGi~~~~~~~~~~i~ 354 (486)
.. .....+.....+...+|++.+|+....+ .++++||||| +|.. ++++..
T Consensus 78 ~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi-~P~w-~l~~a~ 133 (279)
T TIGR00668 78 SRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGI-TPQW-DLQTAK 133 (279)
T ss_pred CccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCC-CCCC-cHHHHH
Confidence 31 1211122344567789999999997654 4799999999 6654 444444
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.84 E-value=1.9e-20 Score=174.16 Aligned_cols=185 Identities=18% Similarity=0.216 Sum_probs=121.2
Q ss_pred cccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 215 ~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.+..+...+++++|||||+++.|.++|+..++.+..+.++|+||+|||||+|.|||.+|... .++.|+||||.+
T Consensus 10 ~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~ 83 (218)
T PRK11439 10 RIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQM 83 (218)
T ss_pred cccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHH
Confidence 44444456799999999999999999999887656678999999999999999999999653 467899999998
Q ss_pred ccccccCCh--------hhhhhhcc---HHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCC
Q 011417 295 SMNKIYGFE--------GEVRSKLS---ETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360 (486)
Q Consensus 295 ~~~~~~~~~--------~e~~~~~~---~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~ 360 (486)
.++...+-. .++..... .+.+....++++.||+...+ ++++++||||+|.+.. ....+
T Consensus 84 ~l~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~-------~~~~~- 155 (218)
T PRK11439 84 ALDALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVY-------EWQKD- 155 (218)
T ss_pred HHHHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCch-------hhhcc-
Confidence 886432211 01111111 13445666899999998765 3579999999843210 01010
Q ss_pred CCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCC
Q 011417 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNY 439 (486)
Q Consensus 361 ~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y 439 (486)
....+++|+.+.....+. + . ...+. +.||-||++++.-.. .+..+-|-.-+-|
T Consensus 156 -----~~~~~~~w~r~~~~~~~~----------~-~------~~~~~-~~vv~GHT~~~~~~~---~~~~i~IDtGav~ 208 (218)
T PRK11439 156 -----VDLHQVLWSRSRLGERQK----------G-Q------GITGA-DHFWFGHTPLRHRVD---IGNLHYIDTGAVF 208 (218)
T ss_pred -----CCccceEEcChhhhhccc----------c-c------cccCC-CEEEECCccCCCccc---cCCEEEEECCCCC
Confidence 023456886532111000 0 0 12356 789999999864332 2346667766644
No 28
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.84 E-value=4.4e-20 Score=170.69 Aligned_cols=168 Identities=23% Similarity=0.274 Sum_probs=116.3
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccC-
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG- 301 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~- 301 (486)
+++++||+||++..|.++++..+..+..+.++++||+||||+++.|++.+|.. ..+++++||||.+.+....+
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~~ 75 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRAE 75 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhCC
Confidence 58999999999999999999887655567799999999999999999998865 35788999999998876543
Q ss_pred -Chhhhhhhc---------cHHHHHHHHHHhhcccccceeC---CcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcc
Q 011417 302 -FEGEVRSKL---------SETFVELFAEVFCCLPLAHVLN---QKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLM 368 (486)
Q Consensus 302 -~~~e~~~~~---------~~~~~~~~~~~~~~lp~~~~i~---~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~ 368 (486)
...+..... ...+++...+|++.||+...++ .++++||||+++...... +. + ++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~--~~---~--~~~~~~~~ 148 (207)
T cd07424 76 PLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDG--VG---A--VTLRPEDI 148 (207)
T ss_pred CcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhh--hh---c--cccCcccc
Confidence 111221111 1235666888999999999874 479999999843221110 00 0 12233456
Q ss_pred cccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCc
Q 011417 369 CELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGY 422 (486)
Q Consensus 369 ~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~ 422 (486)
.+++|++|...... +...-+. +.||-||+..+..+
T Consensus 149 ~~~~w~~~~~~~~~------------------~~~~~~~-~~iV~GHTh~~~~~ 183 (207)
T cd07424 149 EELLWSRTRIQKAQ------------------TQPIKGV-DAVVHGHTPVKRPL 183 (207)
T ss_pred eeeeeccchhhhcC------------------ccccCCC-CEEEECCCCCCcce
Confidence 77899876432111 0111256 88999999876543
No 29
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.81 E-value=4.2e-19 Score=166.80 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=63.7
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCC-----CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCC-eEEEeccCCccccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLP-----SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPS-AIYLSRGNHESKSM 296 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~-----~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~-~v~~lrGNHE~~~~ 296 (486)
.++++|||||+++.|..+++..... ...+.+|||||||||||+|.+|+.+|+.++..+|. .+++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 4899999999999999998864311 23446999999999999999999999999988876 68899999997765
Q ss_pred c
Q 011417 297 N 297 (486)
Q Consensus 297 ~ 297 (486)
.
T Consensus 83 ~ 83 (304)
T cd07421 83 A 83 (304)
T ss_pred h
Confidence 4
No 30
>PHA02239 putative protein phosphatase
Probab=99.80 E-value=2.6e-19 Score=167.21 Aligned_cols=174 Identities=22% Similarity=0.242 Sum_probs=117.8
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCC-CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~-~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (486)
+++++||+||+++.|.++++...... ..+.++|+|||||||++|.+|+..++.+.. .+..+++|+||||.+.+....+
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~~ 80 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIMEN 80 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHhC
Confidence 48999999999999999998864321 235699999999999999999999998753 4568889999999986643211
Q ss_pred -----Ch-hhhhh--------hcc-------------------------------HHHHHHHHHHhhcccccceeCCcEE
Q 011417 302 -----FE-GEVRS--------KLS-------------------------------ETFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 302 -----~~-~e~~~--------~~~-------------------------------~~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
.. .+|.+ .|+ ...+..+.+|++.||+....+ +++
T Consensus 81 ~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~-~~i 159 (235)
T PHA02239 81 VDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKED-KYI 159 (235)
T ss_pred chhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEEC-CEE
Confidence 11 12221 121 012344556889999998866 699
Q ss_pred EEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeeccc
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHE 416 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~ 416 (486)
|||||+ .|.. .+ .+....+++|.+. . . ....= +.||-||+
T Consensus 160 fVHAGi-~p~~-~~-------------~~q~~~~llWiR~-f----~-------------------~~~~g-~~vV~GHT 199 (235)
T PHA02239 160 FSHSGG-VSWK-PV-------------EEQTIDQLIWSRD-F----Q-------------------PRKDG-FTYVCGHT 199 (235)
T ss_pred EEeCCC-CCCC-Ch-------------hhCCHhHeEEecc-c----C-------------------CCCCC-cEEEECCC
Confidence 999999 5431 11 1223578899763 1 0 11133 68999999
Q ss_pred ccccCceEecCCeEEEEecCCCC
Q 011417 417 VKDEGYEIEHDGKLITVFSAPNY 439 (486)
Q Consensus 417 ~~~~G~~~~~~~~~~tifsa~~y 439 (486)
++.++.... .++.|.|-...-|
T Consensus 200 p~~~~~~~~-~~~~I~IDtGa~~ 221 (235)
T PHA02239 200 PTDSGEVEI-NGDMLMCDVGAVF 221 (235)
T ss_pred CCCCCcccc-cCCEEEeecCccc
Confidence 987655333 2345777765533
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.78 E-value=1.9e-18 Score=160.52 Aligned_cols=123 Identities=23% Similarity=0.272 Sum_probs=91.1
Q ss_pred cccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 215 DIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 215 ~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.+.....+++.++||+||++..|.++++...+.+..+.++|+||+|||||+|.||+.+|.. ..++.+|||||.+
T Consensus 8 ~~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~ 81 (218)
T PRK09968 8 KINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAM 81 (218)
T ss_pred eccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHH
Confidence 4455555689999999999999999999877655667899999999999999999999854 2577899999998
Q ss_pred ccccccCC-h-------hhhhhhccH---HHHHHHHHHhhcccccceeC---CcEEEEeCccc
Q 011417 295 SMNKIYGF-E-------GEVRSKLSE---TFVELFAEVFCCLPLAHVLN---QKVFVVHGGLF 343 (486)
Q Consensus 295 ~~~~~~~~-~-------~e~~~~~~~---~~~~~~~~~~~~lp~~~~i~---~~~~~vHgGi~ 343 (486)
.+.....- . .++...... ........+++.||+...+. .++++||||+|
T Consensus 82 ~~~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 82 ALDAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 87543110 0 011111211 23344556899999998763 47999999984
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=8.2e-19 Score=174.73 Aligned_cols=197 Identities=19% Similarity=0.243 Sum_probs=150.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
-+|.-+++++++|++|-..+.|++|+.+|.+|+.+.|+++.++.|+|.+|+.+|..+-|+..|+++++++|..+++|.++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 168 (486)
|.++...|+..+|..+|++|+++.|+++++..+|+.++...+. .++|..+++ ++++..|.+..+.-
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~--~e~A~~ly~------------~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK--IEEATRLYL------------KALEVFPEFAAAHN 392 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc--chHHHHHHH------------HHHhhChhhhhhhh
Confidence 9999999999999999999999999999999999999966665 677777666 77777777777655
Q ss_pred cCCCccH--HHHHHHHHHHhcccchhh----------------HHHHHHHHHHHHHHhcCCCcccccCC
Q 011417 169 EGDVITL--DFVKKMMDDFKNQKCLHK----------------RYAFQIVLQTREMLRALPSLVDIDIP 219 (486)
Q Consensus 169 ~~~~l~~--~~l~~l~e~l~~~~~l~~----------------~e~~~ll~~a~~~l~~ep~~~~i~~~ 219 (486)
+.+.+.+ ..+++++...++..++.+ .++...+......+...|.+.+...+
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 5443221 224444444433333222 22333444445555556666555443
No 33
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=7.3e-17 Score=149.71 Aligned_cols=123 Identities=41% Similarity=0.694 Sum_probs=118.0
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
++...++.+...|+.+++.++|++|+..|.+||+++|.++..|.++|.+|.++|+|+.|++.++.|+.+||.+.++|.+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
|.+|..+|++++|++.|++||+++|++...+..|..+...+++
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888888766665
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=1e-16 Score=159.89 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=147.1
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...|..+.++-++|.+|+.+|..+-|+..|++||++.|+.+.+|.|+|.++...|+..+|+++|.+|+.+.|.++++.++
T Consensus 280 ~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 280 NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (486)
||.+|.++|..++|...|++|++..|+...++.+|+.++++.++ +++|+..+. +++.+.|.+..+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn--l~~Ai~~Yk------------ealrI~P~fAda~ 425 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN--LDDAIMCYK------------EALRIKPTFADAL 425 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc--HHHHHHHHH------------HHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999977665 788888877 8999999988876
Q ss_pred ccCCC--ccHHHHHHHHHHHhcccch
Q 011417 168 IEGDV--ITLDFVKKMMDDFKNQKCL 191 (486)
Q Consensus 168 l~~~~--l~~~~l~~l~e~l~~~~~l 191 (486)
.+.+. ....++..++....+...+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 66542 1223444455544444433
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=3.8e-15 Score=129.35 Aligned_cols=115 Identities=22% Similarity=0.202 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
.++.+|..+...|++++|+.+|++++..+|.+..+|.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
|++++|+..|++++++.|+++..+..++.+...++
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876554
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.3e-16 Score=161.32 Aligned_cols=151 Identities=23% Similarity=0.327 Sum_probs=141.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
....+|..+++|+.+|++|.-+++++.|+++|++|++++|.++.+|..+|.-+....++|+|..+|++|+..+|++..||
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
|.+|.+|.++++++.|.-+|++|++++|.+......++.++.++++ .++|+.+++ +++.++|....
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--~d~AL~~~~------------~A~~ld~kn~l 558 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--KDKALQLYE------------KAIHLDPKNPL 558 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--hhHHHHHHH------------HHHhcCCCCch
Confidence 9999999999999999999999999999999999999999988887 799999999 88888887655
Q ss_pred CcccC
Q 011417 166 ARIEG 170 (486)
Q Consensus 166 ~~l~~ 170 (486)
.+...
T Consensus 559 ~~~~~ 563 (638)
T KOG1126|consen 559 CKYHR 563 (638)
T ss_pred hHHHH
Confidence 54443
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=2.6e-13 Score=121.47 Aligned_cols=147 Identities=23% Similarity=0.280 Sum_probs=130.6
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
...+.+.+...+|..|++.|++..|...+++||+.+|++..+|..+|.+|...|+.+.|-+.|++|++++|++.+++.+.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 33455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSP---NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
|..++.+|++++|...|++|+. +| ..++.+.+++.|-.+.|+ .+.|..+++ ++++.+|.+..
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq--~~~A~~~l~------------raL~~dp~~~~ 174 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQ--FDQAEEYLK------------RALELDPQFPP 174 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCC--chhHHHHHH------------HHHHhCcCCCh
Confidence 9999999999999999999997 45 445778888888855554 677777777 89999998877
Q ss_pred CcccC
Q 011417 166 ARIEG 170 (486)
Q Consensus 166 ~~l~~ 170 (486)
+.+..
T Consensus 175 ~~l~~ 179 (250)
T COG3063 175 ALLEL 179 (250)
T ss_pred HHHHH
Confidence 75544
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.54 E-value=6e-14 Score=151.28 Aligned_cols=131 Identities=22% Similarity=0.237 Sum_probs=122.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.|..+.++..+|..++..|++++|+..|+++++++|++..+|..+|.++..+|++++|+..++++++.+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++..+|++++|+.+|+++++++|++..++..++.++..+++ +++|+..++
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~--~~eA~~~~~ 457 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS--IASSMATFR 457 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999876665 788888877
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=2.1e-13 Score=147.14 Aligned_cols=142 Identities=24% Similarity=0.300 Sum_probs=132.5
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|..+..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
.++..+|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ ++++++|....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~Al~l~p~~~~ 502 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK--FDEAIEKFD------------TAIELEKETKP 502 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHH------------HHHhcCCcccc
Confidence 999999999999999999999999999999999999976665 888888888 78888776433
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.53 E-value=5.4e-13 Score=114.34 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
++..+.++.+|..++..|++++|...|+-+..++|.++..|++||.|+..+|+|++|+..|.+|+.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
|+..+|+.+.|.+.|+.|+....++++
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 999999999999999999998754443
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=6.8e-13 Score=113.93 Aligned_cols=120 Identities=23% Similarity=0.407 Sum_probs=111.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
...+|+++.+.+.+|..++..|++++|+..+++++..+|.++.++.++|.++..+|++++|+..+++++..+|+++..++
T Consensus 10 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 10 LGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 34677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.+|.++...|++++|++.|+++++.+|++.........+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 129 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE 129 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 9999999999999999999999999999988665554443
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=4.8e-13 Score=133.78 Aligned_cols=116 Identities=37% Similarity=0.663 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
.+...|..++..|+|++|+.+|++|++++|+++.+|.++|.+|..+|++++|+..++++++++|+++.+|+.+|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
|+|++|+..|+++++++|+++.+...++.+...+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998766643
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=1e-12 Score=128.38 Aligned_cols=131 Identities=23% Similarity=0.213 Sum_probs=114.3
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.++..+..++.+|..+...|++++|+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|++..++.++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++...|++++|++.|+++++.+|+++.....+. +. ...+++++|+..++
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~--~~~~~~~~A~~~l~ 189 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY-LA--ESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HH--HccCCHHHHHHHHH
Confidence 99999999999999999999999999984222221 11 12234677777765
No 44
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=2.3e-13 Score=118.13 Aligned_cols=116 Identities=13% Similarity=0.182 Sum_probs=106.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
...|+++++++|++ +..+|.++...|++++|+..|++++..+|.+..+|+.+|.++..+|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999985 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 114 ~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+++.+++.++.++..+|+ +++|+..+. +++.+.|.....
T Consensus 90 ~~~~a~~~lg~~l~~~g~--~~eAi~~~~------------~Al~~~p~~~~~ 128 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE--PGLAREAFQ------------TAIKMSYADASW 128 (144)
T ss_pred CCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHH
Confidence 999999999999987776 788988888 888888876443
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=1.8e-12 Score=118.72 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAH-TKLEE--YGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
+|+++..|..+|..+...|++++|+..|++|++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|+++.+++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 4555666666666666666666666666666666666666666666653 45555 46666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
.+|.++...|++++|+.+++++++..|.+.+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 6666666666666666666666666665543
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-12 Score=129.39 Aligned_cols=120 Identities=38% Similarity=0.641 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+.+......|+.+|+.|+|..|+..|++||..+|+++.+|.|+|.||..++.+..|+..++++++++|++..+|.+.|
T Consensus 354 ~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 354 NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
.++..+.+|++|++.|+++++++|++.++...+..|..+.
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988664
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=1.6e-12 Score=118.99 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=112.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-LAMGK--FKEALK 103 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 103 (486)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 78787 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
.++++++.+|+++.++..++.++...++ +++|+..++ +++++.|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~--~~~Ai~~~~------------~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQAD--YAQAIELWQ------------KVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhhCCC
Confidence 9999999999999999999999966655 889998888 77777664
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.9e-12 Score=126.10 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|....+|..+|..|...++...|++.|+.|++++|.+..+|+.||++|.-++-.--|+-+|++|+++.|.++..|..||.
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGE 440 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 33344455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
||.++++.++|+++|.+|+.....+..++..+++++..++. .++|..+++
T Consensus 441 CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d--~~eAa~~ye 490 (559)
T KOG1155|consen 441 CYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD--LNEAAQYYE 490 (559)
T ss_pred HHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 55555555555555555555544444555555555544444 344444444
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=8.9e-13 Score=128.39 Aligned_cols=127 Identities=25% Similarity=0.337 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+++..-.|+-|.-.++.++|+.+|++|++++|....+|..+|.-|..+++...|++.|++|++++|.+-.+|+.||++|.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...=|+-+|++|+++.|+|+..|..||.||.++++ .++|+..+.
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~--~~eAiKCyk 456 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR--LEEAIKCYK 456 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 99999999999999999999999999999999988887 688888777
No 50
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=4.2e-12 Score=140.97 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
...+..++......|++++|+..|+++++++|+ +.++.++|.++.++|++++|+..++++++++|+++.++.++|.++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333444555555669999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVI 173 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l 173 (486)
..|++++|++.|+++++.+|+++.++..++.++..+++ +++|...++ ++++++|+........+.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd--~~eA~~~l~------------~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD--MAATQHYAR------------LVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCCchhhhhhhHH
Confidence 99999999999999999999999999999999977776 788888888 8888888765554433311
Q ss_pred --cHHHHHHHHHHHhcccchhh
Q 011417 174 --TLDFVKKMMDDFKNQKCLHK 193 (486)
Q Consensus 174 --~~~~l~~l~e~l~~~~~l~~ 193 (486)
.......+.+.+.....+..
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc
Confidence 12224444444444444433
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=3.5e-12 Score=135.46 Aligned_cols=132 Identities=13% Similarity=0.032 Sum_probs=106.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
-+|+++.++..+|..+...|++++|+..|++|++++|+++.+++.+|.++...|++++|+..++++++++|.++.+++.+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 35667778888888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.+++..|++++|+..++++++.. |+++.++..++.++..+|+ +++|...+.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~--~~eA~~~~~ 465 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK--HELARKLTK 465 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 777777888888888888888764 6778878888888766555 677777666
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2.8e-12 Score=136.27 Aligned_cols=133 Identities=20% Similarity=0.141 Sum_probs=117.3
Q ss_pred CCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011417 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (486)
..+|+.+.++..+|.++... +++++|+..+++|++++|+++.++..+|.++...|++++|+..|+++++++
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34677788888899877643 348999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|+++.+++.+|.++...|++++|+..++++++++|.++.+...++.++...++ +++|+..++
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~--~eeA~~~~~ 430 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG--IDDAIRLGD 430 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC--HHHHHHHHH
Confidence 99999999999999999999999999999999999998876666655544443 788887776
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=4.1e-12 Score=124.55 Aligned_cols=134 Identities=25% Similarity=0.346 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
.+..+|..|....+.++-...|.+|..++|.++++|+++|.+++-+++|++|+..|+++++++|++..++..++.+.+++
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 36667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+++++++..|+.+.+.-|+.++.+...+.++. .++++++|...|. +++++.|.-
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt--DqqqFd~A~k~YD------------~ai~LE~~~ 495 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILT--DQQQFDKAVKQYD------------KAIELEPRE 495 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh--hHHhHHHHHHHHH------------HHHhhcccc
Confidence 77777777777777777777777777777773 3444667766666 788887773
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.2e-12 Score=128.17 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=147.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.-+|++++.++.+|...+-.++|++|+..|++++.++|++..++..++.+.+++++++++...|+.++..-|+.+++|..
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCC
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~ 161 (486)
.|.++..++++++|++.|.+|+++.|. ++..+...+.+..+.. .++..|..+.. ++++++|
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~------------KA~e~Dp 534 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLR------------KAIELDP 534 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHH------------HHHccCc
Confidence 999999999999999999999999999 6666666666654433 34666666666 9999999
Q ss_pred cCCCCcccCCC--ccHHHHHHHHHHHhcccchhh
Q 011417 162 QYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHK 193 (486)
Q Consensus 162 ~~~~~~l~~~~--l~~~~l~~l~e~l~~~~~l~~ 193 (486)
....+....+. +..+.++++++.|.....+..
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 87766554443 445567888888877665544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=1.5e-11 Score=114.56 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=120.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
.......+..+..+|..++..|++++|+..++++++.+|++..++..+|.++..+|++++|+..++++++.+|.+..++.
T Consensus 24 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 24 TTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 33444568889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|.++...|++++|++.++++++.. |.....+..++.++...++ +++|...+.
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 159 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD--FDKAEKYLT 159 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999854 4556778888888865555 788888877
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=3.6e-12 Score=129.51 Aligned_cols=131 Identities=21% Similarity=0.321 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|.+-.+|+.+|.+|.++++++.|.-.|++|++++|.+......+|..+.++|+.++|+..+++|+.+||.++-..+..|
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++..+++|++|+..+++.-++.|++..+++.++.++..+++ .+.|+..+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~--~~~Al~~f~ 615 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN--TDLALLHFS 615 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc--chHHHHhhH
Confidence 666666666666666666666666666666666666655555 344444443
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=6.3e-12 Score=134.54 Aligned_cols=132 Identities=6% Similarity=-0.024 Sum_probs=124.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..+..+++++.+|.+..+.|.+++|...++.++++.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++.++|++++|+..|+++++.+|+++.++..++.++...|+ .++|...++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~--~~~A~~~~~ 212 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA--LWRARDVLQ 212 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999987777 566666666
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=124.08 Aligned_cols=165 Identities=20% Similarity=0.217 Sum_probs=140.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE---------- 76 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------- 76 (486)
..++|+++++|..+|.+....++-..|+..+++|++++|++..++..||.+|...|.-.+|+.++.+=|.
T Consensus 312 VkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~ 391 (579)
T KOG1125|consen 312 VKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVS 391 (579)
T ss_pred HhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccc
Confidence 4689999999999999999999999999999999999999999999999999998888888888777432
Q ss_pred -------------------------------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 77 -------------------------------IDP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 77 -------------------------------~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
.+| .+++++..||.+|...|+|++|+.+|+.||..+|+|...|..||
T Consensus 392 a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLG 471 (579)
T KOG1125|consen 392 AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLG 471 (579)
T ss_pred cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhh
Confidence 235 57789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCC--ccHHHHHHHHHHH
Q 011417 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDV--ITLDFVKKMMDDF 185 (486)
Q Consensus 124 ~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~--l~~~~l~~l~e~l 185 (486)
..+..-.+ ..+|+..|. +++++.|.|..++.+.++ +-+...+++..++
T Consensus 472 AtLAN~~~--s~EAIsAY~------------rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 472 ATLANGNR--SEEAISAYN------------RALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHhcCCcc--cHHHHHHHH------------HHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 98844333 677777777 999999999999988874 4444455544444
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=1e-11 Score=111.42 Aligned_cols=133 Identities=17% Similarity=0.086 Sum_probs=121.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGY 85 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 85 (486)
..+|+...+|..+|..|.+.|+.+.|-+.|++|+.++|++.+++.|.|.-++.+|++++|...|++|+.. .+..+.++
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhh
Confidence 4578889999999999999999999999999999999999999999999999999999999999999984 24567899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
-++|.|..+.|+.+.|..+|+++++++|+++.....++..+. +.++|..|..+++
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~--~~~~y~~Ar~~~~ 197 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY--KAGDYAPARLYLE 197 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH--hcccchHHHHHHH
Confidence 999999999999999999999999999999999988888884 4445788887777
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.34 E-value=3.8e-12 Score=119.68 Aligned_cols=155 Identities=22% Similarity=0.274 Sum_probs=136.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
...+|..+..++.+|..++..|++..|+..|-.|++.+|++..+++.+|.+|..+|+-..|+..+.+++++.|+...+..
T Consensus 31 ~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 31 STASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred hcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
..|.++.++|++++|...|++++..+|++ .++...++.+...... -.....++..|....++......+++.|+.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l--~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL--VQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH--HHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 99999999999999999999999999955 4566666665544443 456667777778888888888888888864
No 61
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=1.8e-11 Score=132.34 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS----AIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
....++..+...|++++|+..|+++++.+|+++.++.++|.++...|++++ |+..|+++++++|+++.++..+|.+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 445667888899999999999999999999999999999999999999986 8999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+...|++++|+..++++++++|+++.++..++.++...++ +++|+..++
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~--~~eA~~~l~ 342 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ--YTAASDEFV 342 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999877666 788888877
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.9e-11 Score=112.54 Aligned_cols=131 Identities=22% Similarity=0.235 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYYR 87 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 87 (486)
+|+.+..+..+|..+...|++++|++.|+++++..|.+..++.++|.++...|++++|+..+++++... +.....+..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 466678899999999999999999999999999999999999999999999999999999999999864 456788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|...++++++.+|+++.++..++.++...++ +++|...++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 193 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ--YKDARAYLE 193 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999876665 788888877
No 63
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=1.9e-11 Score=115.40 Aligned_cols=155 Identities=23% Similarity=0.221 Sum_probs=128.3
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK- 83 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~- 83 (486)
+.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45567788999999999999999999999999999999876 68899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHHhhHHHHHhhcCcccccccccc
Q 011417 84 --GYYRRGAAYLAM--------GKFKEALKDFQQVKKLSPNDPDAAQKV---KECEKAVKKLKFEEAIAVPESERHSVAD 150 (486)
Q Consensus 84 --~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~l---~~~~~~l~~~~~~~A~~~~~~~~~~~a~ 150 (486)
+++.+|.++... |++++|++.|+++++.+|++..++..+ ...........+..|..++..+++..|.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 799999999987 889999999999999999997664333 3333333333345566666777777777
Q ss_pred cccccccccCCc
Q 011417 151 SIDYQSIEVEPQ 162 (486)
Q Consensus 151 ~~~~~~l~~~~~ 162 (486)
..+.+++...|.
T Consensus 187 ~~~~~al~~~p~ 198 (235)
T TIGR03302 187 NRFETVVENYPD 198 (235)
T ss_pred HHHHHHHHHCCC
Confidence 777788877665
No 64
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.33 E-value=1.2e-11 Score=133.58 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=72.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--
Q 011417 24 AFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE-- 100 (486)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-- 100 (486)
++..|++++|+..++++++.+| ........++.++...|++++|+..++++++.+|+++.+++.+|.++...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 5666666666666666666654 2233344455666666666666666666666666666666666666666666664
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 101 --ALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 101 --A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~l~ 308 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ--NEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 5666666666666666666666666644444 555555554
No 65
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=1.5e-11 Score=105.48 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=106.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
+.|+++++.+|++..+...+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 115 ~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++..++.++.++...++ +++|+..++ ++++.+|..
T Consensus 84 ~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--PESALKALD------------LAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhcccc
Confidence 99999999999977665 888888888 777776643
No 66
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7.8e-11 Score=114.28 Aligned_cols=122 Identities=30% Similarity=0.470 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
...+......|+.+++.|+|..|...|++|+..-+. -..++.|+|.|+.++++|.+|+..+.++|
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345667889999999999999999999999875331 13568999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
.++|+|..++|+.|.++..+|+|+.|+..|++|+++.|+|..+...+..+.......
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888766654
No 67
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=1.8e-11 Score=118.91 Aligned_cols=131 Identities=22% Similarity=0.302 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.+.++..+...|..+.+.|++++|+..|++|++.+|+++.+...++.++...|+++++.+.++......|+++..+..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++..+|++++|+.+|+++++.+|+|+..+..++.++...|+ .++|+.+..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~--~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR--KDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHhccccccccccccccccccccccccccccccccccccccc--ccccccccc
Confidence 999999999999999999999999999999999999977776 688887766
No 68
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.28 E-value=6.1e-11 Score=131.82 Aligned_cols=130 Identities=15% Similarity=0.027 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+ +..+..+|.++.+.|++++|+..|+++++++|+++.++.++|.++...|++++|+..++++++++|+++.+++++|
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++..+|++++|+..|+++++++|++..+....+.+...... ++.|...+.
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~--~~~a~~~~~ 735 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN--FRRLHEEVG 735 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH--HHHHHHHHH
Confidence 999999999999999999999999999999988888855444 777777666
No 69
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.28 E-value=1.4e-10 Score=96.72 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYR 87 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 87 (486)
+++++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 6789999999999999999999999999998885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
+|.++..+|++++|+..++++++..|+++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999987654
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=121.63 Aligned_cols=121 Identities=15% Similarity=0.276 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
.+++.+..+|..|+..|+|++|+.+|+.||..+|++...|..||..+....+..+|+..|.+|+++.|....++|++|.+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHhhH
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPND----------PDAAQKVKECEKAVKKL 132 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~l~~~ 132 (486)
+..+|.|++|.++|-.||.+.+.. ..+|..|..++..+++.
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 999999999999999999997651 24677777777666663
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.25 E-value=2.3e-10 Score=102.71 Aligned_cols=111 Identities=21% Similarity=0.292 Sum_probs=101.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
......+..+..++.+|..+...|++++|+.+|+++++..|+. +.++.++|.++..+|++++|+..++++++.+|++
T Consensus 26 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 26 LPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4556677888999999999999999999999999999987763 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 011417 82 PKGYYRRGAAYLAMGK--------------FKEALKDFQQVKKLSPND 115 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 115 (486)
..++..+|.++..+|+ +++|++.++++++.+|++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999988 678888888888888877
No 72
>PLN02789 farnesyltranstransferase
Probab=99.24 E-value=1.5e-10 Score=113.42 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHH
Q 011417 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY--GSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~ 85 (486)
-+|++..+|..++.++...+ ++++|+..++++++.+|++..+|.+++.++..+++. ++++..++++++.+|++..+|
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW 145 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW 145 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence 35666777777787777777 567888888888888888888888888777777763 667777778888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
..++.++..+|++++|++++.++++.+|.+..+|...+.+...+
T Consensus 146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 88888888888888888888888888888888887777766543
No 73
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=101.08 Aligned_cols=120 Identities=35% Similarity=0.587 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+.+..+...|+.+|..|+|++|...|+.||+..|.. +..|.++|.+++++++++.|+..+.+||+++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 4667789999999999999999999999999999975 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.++|.+|.++..|++|++.|++.++.+|...++...+..+-....
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999887766665544333
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.23 E-value=4.6e-11 Score=137.52 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV--------------YYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
+|+++.++..+|.++++.|++++|+.+|+++++.+|++.. ....+|.++...|++++|+..|++++
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4666778888888888888888888888888888887542 12345777888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhc----------------
Q 011417 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIA---------------- 139 (486)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~---------------- 139 (486)
+++|++..+++.+|.++...|++++|++.|+++++.+|++..++..++.++... ..++|+.
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~---~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ---SPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888899999999999999999999999999999999999888888776432 1233332
Q ss_pred ---------------CcccccccccccccccccccCCcCCCC
Q 011417 140 ---------------VPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 140 ---------------~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+...+++.+|...+.++++++|.....
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 234577788888888888888875443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.1e-10 Score=114.18 Aligned_cols=123 Identities=18% Similarity=0.131 Sum_probs=110.8
Q ss_pred ccCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELN---SQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~---p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
.+..+.++..+.++|... |. .+.+|+.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456788999999999643 33 37889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
..|+++++++|++..++.+++.++...++ +++|+..++ ++++++|..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~eA~~~~~------------~al~~~P~~ 165 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGR--YELAQDDLL------------AFYQDDPND 165 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCCCC
Confidence 99999999999999999999999976665 889988888 777777765
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=2.2e-10 Score=89.93 Aligned_cols=99 Identities=39% Similarity=0.664 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
+++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 011417 96 GKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~ 114 (486)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 77
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=3.3e-11 Score=138.66 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=118.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--------------
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG-------------- 84 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------- 84 (486)
.+|..+...|++++|+..|+++++.+|+++.++..+|.+|.++|++++|+..|+++++.+|++...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 458899999999999999999999999999999999999999999999999999999999986531
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
...+|.++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++++|...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~--~~eA~~~y~------------~aL~~~p~~~ 419 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD--YAAAERYYQ------------QALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHhCCCCH
Confidence 23458889999999999999999999999999999999999966665 888888888 7777777654
Q ss_pred C
Q 011417 165 G 165 (486)
Q Consensus 165 ~ 165 (486)
.
T Consensus 420 ~ 420 (1157)
T PRK11447 420 N 420 (1157)
T ss_pred H
Confidence 3
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.1e-10 Score=116.21 Aligned_cols=112 Identities=32% Similarity=0.572 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
......|+..+..|+|+.|+.+|.+||.++|.+...|.|+..+|..+|+|++|+....+.++++|+.+.+|.++|.++..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+|+|++|+..|.+.|+.+|++......+..++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999999998887
No 79
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=6.4e-11 Score=88.96 Aligned_cols=66 Identities=39% Similarity=0.591 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDP 79 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 79 (486)
+.++..+|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4445555555555555555555555555555555555555555555555 45555555555555544
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=4.1e-10 Score=106.35 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=115.1
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhC
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTKL--------EEYGSAIQDASKAIEID 78 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~ 78 (486)
++....+++.+|..++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|+..+++++..+
T Consensus 66 ~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 66 SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 3445578999999999999999999999999999998776 799999999987 88999999999999999
Q ss_pred CCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhhHHHHHhh
Q 011417 79 PRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKAVKKLKFEEAI 138 (486)
Q Consensus 79 p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~l~~~~~~~A~ 138 (486)
|++..++ ..+|.+|...|++++|+..|+++++..|+. ++++..++.++..+++ +++|.
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~--~~~A~ 223 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL--KDLAQ 223 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC--HHHHH
Confidence 9986543 467889999999999999999999997765 5789999999988777 78888
Q ss_pred cCcc
Q 011417 139 AVPE 142 (486)
Q Consensus 139 ~~~~ 142 (486)
.+++
T Consensus 224 ~~~~ 227 (235)
T TIGR03302 224 DAAA 227 (235)
T ss_pred HHHH
Confidence 7765
No 81
>PRK15331 chaperone protein SicA; Provisional
Probab=99.19 E-value=6.8e-10 Score=95.74 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
-+++..+..+..|..++..|++++|...|+-....+|.+++.|..||.|+..+++|++|+..|..|..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (486)
|.|+..+|+.++|+.+|+.++. .|++.....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 9999999999999999999998 577665443
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.19 E-value=9.9e-11 Score=87.90 Aligned_cols=68 Identities=37% Similarity=0.625 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 011417 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSP 113 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 113 (486)
+++.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999998
No 83
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=4.6e-10 Score=110.03 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=126.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.++-.+++-.+-.++...+++++|+..+.++|+++|++..+|..++.++..++ ++++|+..++++++.+|++..+|+.+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34445555445555677889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 89 GAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 89 g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+.++..+|+. ++++..++++++.+|++-.+|...+.++..++. +++|+..+. ++++.+|....+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~--~~eeL~~~~------------~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG--WEDELEYCH------------QLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh--HHHHHHHHH------------HHHHHCCCchhH
Confidence 9999999974 788999999999999999999999999988876 788888888 888888877555
Q ss_pred c
Q 011417 167 R 167 (486)
Q Consensus 167 ~ 167 (486)
.
T Consensus 179 W 179 (320)
T PLN02789 179 W 179 (320)
T ss_pred H
Confidence 3
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.18 E-value=1.7e-09 Score=113.58 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
...+.+...|+.++..|++++|.+.+.++|+++|.++.+|+.||.+|.++|+.++|...+-.|-.++|.+.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCC
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~ 161 (486)
..++|.+++|.-+|.+|++.+|.+....+..+.++...|. ..+|...+. +.+...|
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~--~~~Am~~f~------------~l~~~~p 272 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD--LKRAMETFL------------QLLQLDP 272 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--HHHHHHHHH------------HHHhhCC
Confidence 9999999999999999999999999999999999977776 678888777 6666666
No 85
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.16 E-value=1.6e-10 Score=108.87 Aligned_cols=114 Identities=36% Similarity=0.492 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+..+...|+.|+++|.|++|+.+|.+++..+|.++..+.|+|.+|+++++|..|...++.|+.+|.....+|.+.|.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (486)
.+|...+|.+.++.+|++.|++.+....++.+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999998887666655543
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=1.2e-09 Score=100.24 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=108.6
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..+.....+..+|...++.|+|.+|+..++++..+.|++.++|..+|.+|.+.|++++|...|.+++++.|..+.+..++
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 34455556666888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~ 141 (486)
|..+.-.|+++.|...+..+....+.+..+..+++.+....++ +++|-...
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--~~~A~~i~ 225 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD--FREAEDIA 225 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--hHHHHhhc
Confidence 9999999999999999988888877888888888888876666 44444433
No 87
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.15 E-value=6.3e-10 Score=124.52 Aligned_cols=133 Identities=18% Similarity=0.196 Sum_probs=123.0
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...+..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 198 (899)
T TIGR02917 119 LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLL 198 (899)
T ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 35667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|+..|+++++.+|+++.++..++.++...++ +++|...++
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 251 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE--FEEAEKHAD 251 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999988866554 777776655
No 88
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=107.98 Aligned_cols=102 Identities=27% Similarity=0.441 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (486)
+-+-.-|.-++..++|++|+..|.+||+++|.++..|+++|.+|.++|+|+.|++.++.|+++||.+..+|..|+.++..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 33555677788899999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 129 VKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 129 l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+++ +++|+..|. ++++++|.+.
T Consensus 162 ~gk--~~~A~~ayk------------KaLeldP~Ne 183 (304)
T KOG0553|consen 162 LGK--YEEAIEAYK------------KALELDPDNE 183 (304)
T ss_pred cCc--HHHHHHHHH------------hhhccCCCcH
Confidence 665 899988888 9999999874
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.13 E-value=3.8e-10 Score=96.94 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=94.0
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 40 AIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 40 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
...+. ++.-+..+.+|..++..|++++|...|+.+..+||.+...|++||.++..+|+|++|+..|.+|+.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34567 78888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++.+.|+..+++ .+.|...++
T Consensus 106 ~~~ag~c~L~lG~--~~~A~~aF~ 127 (157)
T PRK15363 106 PWAAAECYLACDN--VCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999988877 677777777
No 90
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.12 E-value=1.1e-09 Score=120.90 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. ++.+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45556779999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|+..++++++..|++++++..++.++...+. .++|+..++
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~--~e~Al~~l~ 174 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL--SAPALGAID 174 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHH
Confidence 999999999999999999999999999999999988865444 566665544
No 91
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.12 E-value=1.6e-09 Score=110.15 Aligned_cols=115 Identities=21% Similarity=0.307 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...++..++..+...|++++|++.++++++..|.+. ..+..+|.++...|++++|+..++++++.+|++..+++.
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 219 (389)
T PRK11788 140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASIL 219 (389)
T ss_pred hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence 344455555555555555555555555555544431 233445555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEK 127 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 127 (486)
+|.++...|++++|++.++++++.+|.+ ..++..++.++.
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 5555555555555555555555554443 233344444443
No 92
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.11 E-value=1.2e-09 Score=111.24 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-----KGYYR 87 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~ 87 (486)
....+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++.+|.+. ..+..
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3456777888888888888888888888888888888888888888888888888888888888776643 24567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|+..|+++++.+|++..++..++.++...++ +++|+..++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~ 238 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD--YAAAIEALE 238 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 78888888888888888888888888888888888887755554 677777776
No 93
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=8.7e-10 Score=123.39 Aligned_cols=130 Identities=22% Similarity=0.238 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.|+++..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+..+++++++.|+++..+..+|
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 844 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG 844 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 344556666777777777777777777777777777777777777777777777 6677777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|++.|+++++.+|.++.++..++.++...|+ +++|...++
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 895 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR--KAEARKELD 895 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 777777777777777777777777777777777777655544 566665554
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.9e-10 Score=111.02 Aligned_cols=132 Identities=24% Similarity=0.328 Sum_probs=118.1
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------------VYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
-++.++++++..|.+++...+.+.|+..|+++|+++|+.. ..+...|.-.++.|+|.+|.++|..||.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 4567788999999999999999999999999999998863 4577789999999999999999999999
Q ss_pred hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 77 IDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 77 ~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++|++ +..|.++|.+...+|+.++|+..++.|++++|....++...+.|+..+++ |++|+..++
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~--~e~AV~d~~ 345 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK--WEEAVEDYE 345 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 99985 56789999999999999999999999999999999999999999988877 788888888
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=1.8e-09 Score=96.41 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=94.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (486)
......+..++.+|..+...|++++|+..|++++.+.|+ .+.++.++|.++...|++++|+..+++++.++|....+
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 344456888999999999999999999999999998776 35689999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 011417 85 YYRRGAAYL-------AMGKFK-------EALKDFQQVKKLSPNDP 116 (486)
Q Consensus 85 ~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 116 (486)
+..+|.++. .+|+++ +|...|++++..+|++.
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999 777766 66666777777787654
No 96
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.09 E-value=3e-10 Score=88.90 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=74.1
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 103 (486)
..|+|++|+..++++++.+|. +..+++.+|.||++.|+|++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88889999999999999999999999999
Q ss_pred HHHHH
Q 011417 104 DFQQV 108 (486)
Q Consensus 104 ~~~~a 108 (486)
.+++|
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 97
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.08 E-value=6.8e-10 Score=98.71 Aligned_cols=158 Identities=22% Similarity=0.212 Sum_probs=100.8
Q ss_pred ceEEEccCCCChHHH---HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHH--HhchhcCCCeEEEeccCCcccccc
Q 011417 223 HFTVCGDVHGQFYDL---LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTL--FAFKCMCPSAIYLSRGNHESKSMN 297 (486)
Q Consensus 223 ~~~v~GDihG~~~~l---~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l--~~lk~~~p~~v~~lrGNHE~~~~~ 297 (486)
+++++||+|+..... ...+.........+.++++||++++|..+.+..... .......+..+++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 589999999999987 333333222334567999999999999988888765 556666788999999999988764
Q ss_pred cccCChhhhh----------------------------------hhccHHHHHHHHHHhhcccccceeCCcEEEEeCccc
Q 011417 298 KIYGFEGEVR----------------------------------SKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLF 343 (486)
Q Consensus 298 ~~~~~~~e~~----------------------------------~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~ 343 (486)
..+....... .............+.............|+++|.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~H~p~~ 161 (200)
T PF00149_consen 82 SFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVFTHHPPY 161 (200)
T ss_dssp HHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEEESSSSS
T ss_pred cccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEEEecCCC
Confidence 3211111100 001112222333333334444445668999999883
Q ss_pred CCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccc
Q 011417 344 SVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEV 417 (486)
Q Consensus 344 ~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~ 417 (486)
+........ .....+.+.+..+++..++ ++++.||+-
T Consensus 162 ~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~v-~~~~~GH~H 198 (200)
T PF00149_consen 162 SSSSDSSSY------------------------------------GNESKGREALEELLKKYNV-DLVLSGHTH 198 (200)
T ss_dssp TTSSSTHHH------------------------------------SSEEEHHHHHHHHHHHTTC-SEEEEESSS
T ss_pred Ccccccccc------------------------------------chhhccHHHHHHHHhhCCC-CEEEeCcee
Confidence 211110000 1235677899999999999 999999985
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=2.2e-09 Score=106.27 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
+....++|..|..++..|++++|+..++..++..|+|+..+...+.++...++..+|.+.+++++.++|+..-.+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
++.+.|++++|+..+++.+..+|+++..|..|+..+..+|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999888874
No 99
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.8e-09 Score=99.37 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKG 84 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~ 84 (486)
.++|++++.|..+|.+|+..|++..|...|.+|+++.|+++..+..+|.+++... ...++.+.+++++.+||.+..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 4678899999999999999999999999999999999999999999999987654 4679999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (486)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (486)
.+.||..++..|+|.+|...++..++..|.+..-...+
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999999998765543333
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.2e-09 Score=105.60 Aligned_cols=120 Identities=30% Similarity=0.528 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+.....+...|+..++.|+|..|.++|..||.++|++ +..|.++|.+..++|+.++|+..++.|+++||....++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 45566778899999999999999999999999999986 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
...|.|+..++++++|++.|++|++...+ .+....+..+...++
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 99999999999999999999999998766 555555555544444
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=9.6e-09 Score=97.10 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
.+......++..|++..|+++..+.|++.|.++..+..++.||...|+...|+..++.+-++..++.+++|.++.+++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 35556667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCc--
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVI-- 173 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l-- 173 (486)
|+.+.++...+.+|+++|++...+-....+....+. .+-+-...+.+.|.++.....+.++.+|.-...+++.-.+
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~--les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS--LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 999999999999999999998765544444333333 3344444455567777777778888888755544443211
Q ss_pred ----cHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 011417 174 ----TLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA 209 (486)
Q Consensus 174 ----~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ 209 (486)
..+.+.+++...++...+.++++..+|+.+...+..
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 122344555555555556666666666666555443
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-09 Score=108.65 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=117.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CCHHHHHHHHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----P---RYPKGYYRRGA 90 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~lg~ 90 (486)
.-+|..|.+.++++.|...|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|++++..- + .....+.+||.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 4678888889999999999999999999999999999999999999999999999998432 2 23456899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++.+++.+++|+.+|+++|.+.|.+++++..+|.++..+|+ .+.|+..+. +++.+.|..
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn--ld~Aid~fh------------KaL~l~p~n 522 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN--LDKAIDHFH------------KALALKPDN 522 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC--hHHHHHHHH------------HHHhcCCcc
Confidence 99999999999999999999999999999999999988887 799999998 888887764
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=3.3e-09 Score=97.38 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=121.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+|+...+ .+.+..++..|+-+.+..+..++...+|.+......+|....+.|+|.+|+..+.++..+.|+++++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45666677 89999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.+|.+.|++++|...|.+++++.|.++.+..+++..+...++ ++.|..++.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd--~~~A~~lll 192 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD--LEDAETLLL 192 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999999999976665 677777666
No 104
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.1e-09 Score=106.56 Aligned_cols=172 Identities=17% Similarity=0.157 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
-++.++.+.|++.+..|++++|.+.|++|+..+.....+++++|..+..+|+.++|+.+|-+.-.+--+++++++.++.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC--ccc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA--RIE 169 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~--~l~ 169 (486)
|..+.+..+|++++.++..+-|++|..+..|+.+|.+-|. ...|..++- .+....|-.... ++.
T Consensus 568 ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd--ksqafq~~y------------dsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD--KSQAFQCHY------------DSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc--hhhhhhhhh------------hcccccCcchHHHHHHH
Confidence 9999999999999999999999999999999999966555 344444322 222222322111 122
Q ss_pred CCCccHHHHHHHHHHHhcccchhhHHHH
Q 011417 170 GDVITLDFVKKMMDDFKNQKCLHKRYAF 197 (486)
Q Consensus 170 ~~~l~~~~l~~l~e~l~~~~~l~~~e~~ 197 (486)
.-++..++.++.+..+.+...+.+....
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 2224455566666666665555554433
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.2e-09 Score=81.02 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44444555555555555555555555555555555555555555555555555555554443
No 106
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=99.01 E-value=3.7e-10 Score=98.48 Aligned_cols=143 Identities=38% Similarity=0.487 Sum_probs=119.3
Q ss_pred ccccccCChhhhhhhccHH-HHHH---HHHHhhcccccceeCC-cEEEEeCcccCCCC-CCchhhcccccCC--CCCCCC
Q 011417 295 SMNKIYGFEGEVRSKLSET-FVEL---FAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDG-VKLSDIKTIDRFC--EPPEEG 366 (486)
Q Consensus 295 ~~~~~~~~~~e~~~~~~~~-~~~~---~~~~~~~lp~~~~i~~-~~~~vHgGi~~~~~-~~~~~i~~~~r~~--~~~~~~ 366 (486)
.++..+|+..++...++.. .|.. +.++|+.||+.+++++ .++|.|||+ ++.. ..+++++.+.|.. +....+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~g 80 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGL-SPGLDRLLDIIEVLDRLRACEVPHAG 80 (155)
T ss_pred hhhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCC-CcchhhhHHHHHHHhhhhcccCCCcc
Confidence 3455677777777766543 4555 9999999999999998 899999999 6644 6788888888775 667777
Q ss_pred cccccccCCCCC--CCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCC
Q 011417 367 LMCELLWSDPQP--LPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 440 (486)
Q Consensus 367 ~~~~llw~dp~~--~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~ 440 (486)
.+.+.+|++|.. ...|.++++|.+..| .+.+..|+..+.. +.+.|+|+..+.++...+.+..+|.||+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~-~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 81 HTHDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTP-KLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred ccccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhccc-ceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 888889999986 468999999999877 7889999999999 88999999999999988886899999999986
No 107
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.01 E-value=1.3e-09 Score=80.80 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999986
No 108
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.00 E-value=1.5e-09 Score=105.43 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.++..+......+...++++++...++++.... +.++..|..+|.++.+.|+.++|+..++++++++|++..+...++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445667777788899999999999999987655 678999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|+++++.+.+++..+..|+++..+..++.++..+++ +++|+.+++
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~--~~~Al~~~~ 238 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR--YEEALEYLE 238 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---HHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--ccccccccc
Confidence 999999999999999999998889999999999999988887 799999998
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=1.5e-08 Score=96.51 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHH
Q 011417 14 AEELKALANEA-FRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYY 86 (486)
Q Consensus 14 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 86 (486)
....+..|..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 66899999999999999999998 589999999999999999999999999999887 478999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
.+|.++..+|++++|.+.|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999988654
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=6.5e-09 Score=111.59 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=104.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
-.|+.+.++..+|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|++.|++++..+|+++.++..+
T Consensus 115 ~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~ 194 (694)
T PRK15179 115 RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGW 194 (694)
T ss_pred hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
|.++...|+.++|...|++|++...+-...
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999997765544
No 111
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=8.9e-09 Score=113.71 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=118.8
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..+.++........+..-.|++++|+..+.+++..+|..+.++..+|.++...|++++|+..++++++++|+++.++..+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44555556666777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++...|++++|+..++++++..|+++. +..++.++...++ +++|+..++
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~--~~~Al~~l~ 140 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR--HWDELRAMT 140 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC--HHHHHHHHH
Confidence 99999999999999999999999999999 9999999876665 677877776
No 112
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.97 E-value=7.9e-09 Score=112.97 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=107.5
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
-.|+.++..+..|...++.|+++.|+..|+++++.+|.++.+...++.++...|+.++|+..+++++..+|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34567888999999999999999999999999999999965544888888889999999999999994344445555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++..+|++++|++.|+++++.+|++++++..++.++...++ .++|+...+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q--~~eAl~~l~ 160 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR--GGVVLKQAT 160 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC--HHHHHHHHH
Confidence 7899999999999999999999999999988877666655544 566665543
No 113
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.4e-09 Score=108.96 Aligned_cols=118 Identities=20% Similarity=0.167 Sum_probs=88.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..|+.+-.|+..|.-|+..|++.+|..+|.||..++|....+|...|.++...++.++|+.+|.+|-++-|........+
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl 386 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL 386 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH
Confidence 45777888999999999999999999999999999999999999999888888888888888888776666655555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
|.=|...++++.|.+.|.+|+.+.|.+|-....+|.+.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVA 424 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhee
Confidence 65555566666666666666666665555444444433
No 114
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.94 E-value=4.8e-09 Score=110.91 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=135.6
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
.+.|.+.-++...|.+.+..++|..|+.+|++++.++|.. +.....+|.|+.+++..+.|+..|++|++++|.++.++.
T Consensus 158 ~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 158 KQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred hhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence 4677888899999999999999999999999999999975 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH-----------------------HHHHhhcC
Q 011417 87 RRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-----------------------KFEEAIAV 140 (486)
Q Consensus 87 ~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~-----------------------~~~~A~~~ 140 (486)
.||.+-.... .+..|+..+.+|...+|.||.++..|+.-+...++. -|..|..+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9998777655 467899999999999999999988888755443332 25666667
Q ss_pred cccccccccccccccccccCCcC
Q 011417 141 PESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 141 ~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
..+|+++.|...|.+++..++++
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HhhccHHHHHHHHHHHHccCCCC
Confidence 78899999999999999988876
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.94 E-value=2.4e-08 Score=94.31 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY---ANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 85 (486)
..+..++..|..++..|+|++|++.|++++...|..+.+. +.+|.+|++.+++++|+..+++.++..|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3567799999999999999999999999999999986554 899999999999999999999999999886 4678
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHhhcCcccc
Q 011417 86 YRRGAAYLAMGK------------------FKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESE 144 (486)
Q Consensus 86 ~~lg~~~~~~g~------------------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~~~~~A~~~~~~~ 144 (486)
+.+|.++..+++ ..+|+..|++.++..|+.. ++...+..+...+.+.++.-|..++.++
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988755541 2578899999999999874 5677788888888888888888888888
Q ss_pred cccccccccccccccCCc
Q 011417 145 RHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~ 162 (486)
.+..|..-...+++..|+
T Consensus 190 ~y~AA~~r~~~v~~~Yp~ 207 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPD 207 (243)
T ss_pred chHHHHHHHHHHHHHCCC
Confidence 877777766666665554
No 116
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.92 E-value=3.5e-08 Score=86.84 Aligned_cols=81 Identities=28% Similarity=0.439 Sum_probs=60.8
Q ss_pred eEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCCh
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFE 303 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~ 303 (486)
+.+++|+||+...+.++++.... .+.++++||++++|+.+. + .....+++++||||....
T Consensus 2 i~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~--------~--~~~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 2 IGVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE--------L--ELKAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred EEEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch--------h--hcCCcEEEEeCCCCCcCC-------
Confidence 78999999999999998887543 457999999999998765 1 223468999999997532
Q ss_pred hhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcc
Q 011417 304 GEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 342 (486)
Q Consensus 304 ~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi 342 (486)
+..+|....+ +.+++++||..
T Consensus 62 ------------------~~~~p~~~~~~~~g~~i~v~Hg~~ 85 (155)
T cd00841 62 ------------------FPILPEEAVLEIGGKRIFLTHGHL 85 (155)
T ss_pred ------------------cccCCceEEEEECCEEEEEECCcc
Confidence 3445655444 34799999855
No 117
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=2.8e-08 Score=91.57 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGY 85 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 85 (486)
..+..++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 357789999999999999999999999999998875 78899999999999999999999999999999864 589
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHhhcCccccccccccc
Q 011417 86 YRRGAAYLAMG-----------KFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS 151 (486)
Q Consensus 86 ~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~ 151 (486)
+.+|.++..+. ...+|+..|+..++..|+.+ ++...+..+...+....+.-|..++.++.+..|..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999877654 34589999999999999885 55677888888888888888989999888888877
Q ss_pred ccccccccCCc
Q 011417 152 IDYQSIEVEPQ 162 (486)
Q Consensus 152 ~~~~~l~~~~~ 162 (486)
-+..+++..|+
T Consensus 163 r~~~v~~~yp~ 173 (203)
T PF13525_consen 163 RFQYVIENYPD 173 (203)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHHCCC
Confidence 77777766664
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=4.6e-08 Score=89.21 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|.........|..+-..|+|++|+++|+..++-+|.+..++...-.+...+|+--+|++.+..-++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455566778888899999999999999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH-HHHHhhcCcccccccccccccccccccCCcCCCCc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL-KFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~-~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (486)
+|...|+|++|.-++++.+-..|.++-.+..++.++...+.. +..-|..+++ +++++.|....+.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~------------~alkl~~~~~ral 228 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE------------RALKLNPKNLRAL 228 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHhChHhHHHH
Confidence 999999999999999999999999999999999887665542 3444555555 8888888554443
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=3.4e-08 Score=103.09 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CC
Q 011417 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKL--------EEYGSAIQDASKAIEI--DP 79 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~--~p 79 (486)
.+..++..|..++..++ ..+|+.+|++|++++|+++.++..++.+|... .+...+.+..++++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 46678889988887655 88999999999999999999999999988654 2345667777777764 77
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccccccccccc
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~ 159 (486)
.++.+|.-+|..+...|++++|...+++|++++| +..++..+|.++...|+ .++|+..++ +++.+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~--~~eA~~~~~------------~A~~L 482 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD--NRLAADAYS------------TAFNL 482 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHhc
Confidence 8889999999999999999999999999999999 57899999999977776 788888888 89999
Q ss_pred CCcCCCCcc
Q 011417 160 EPQYSGARI 168 (486)
Q Consensus 160 ~~~~~~~~l 168 (486)
+|.+..-.+
T Consensus 483 ~P~~pt~~~ 491 (517)
T PRK10153 483 RPGENTLYW 491 (517)
T ss_pred CCCCchHHH
Confidence 998765433
No 120
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.87 E-value=1.6e-07 Score=77.01 Aligned_cols=107 Identities=26% Similarity=0.333 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYY 86 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 86 (486)
.+.+..+-..|..+...|+.+.|++.|.++|.+.|..+.+|.|++.++.-+|+.++|+..+++|+++.-+. ..++.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999996543 35688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
..|.+|..+|+-+.|...|+.|-++.+....
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 9999999999999999999999999876554
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=3.3e-08 Score=107.22 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=120.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--
Q 011417 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-- 82 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 82 (486)
...+-+|.+..++..+...+...+++++|+..++.+++..|+...+|+.+|.++.+.+++++|... +++..-+.+.
T Consensus 22 ~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 22 DANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred ccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch
Confidence 356678899999999999999999999999999999999999999999999999999998888777 7776666665
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 83 -----------------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 83 -----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+++.+|.||.++|++++|...|+++++.+|+|+.+..++|..+... +.++|..++.
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~---dL~KA~~m~~ 173 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE---DKEKAITYLK 173 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999777 4788887765
No 122
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=1.5e-08 Score=101.57 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=92.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
+...|..++..|+|++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..+++|++++|+++.+++.++.++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999997776
Q ss_pred hHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+ +++|+..++ +++.++|...
T Consensus 85 ~--~~eA~~~~~------------~al~l~P~~~ 104 (356)
T PLN03088 85 E--YQTAKAALE------------KGASLAPGDS 104 (356)
T ss_pred C--HHHHHHHHH------------HHHHhCCCCH
Confidence 6 889998888 8888888754
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=8e-09 Score=92.24 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=93.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMG 96 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g 96 (486)
+.++-.+.|..+...+.+.++.++.+ ..+++++|.++...|++++|+..|++++.+.|+. +.+++++|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34455566777777786666666665 6778999999999999999999999999987763 458999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 97 KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 97 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
++++|+..|+++++++|.....+..++.++..++
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997554
No 124
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=5.5e-08 Score=99.97 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=134.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
....+|....+...+|..|...|+|+.|+..+++|+++ .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999998 6776777777999999999999999999999975
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHH---HHHHHHHHHHHHhhHHHHHhhcCc
Q 011417 78 --------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP-----NDPD---AAQKVKECEKAVKKLKFEEAIAVP 141 (486)
Q Consensus 78 --------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~---~~~~l~~~~~~l~~~~~~~A~~~~ 141 (486)
+|..+.++.+||.+|...|++++|..++++|+++.- ..++ .+..++.++...++ +++|..++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~ 348 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKLL 348 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHH
Confidence 455677899999999999999999999999998842 2333 34555555544444 77777777
Q ss_pred ccccccccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcC
Q 011417 142 ESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL 210 (486)
Q Consensus 142 ~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~e 210 (486)
. +++++.....+... .........+.+.+....+.. ++..+..++..+++.-
T Consensus 349 q------------~al~i~~~~~g~~~---~~~a~~~~nl~~l~~~~gk~~--ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 349 Q------------KALKIYLDAPGEDN---VNLAKIYANLAELYLKMGKYK--EAEELYKKAIQILREL 400 (508)
T ss_pred H------------HHHHHHHhhccccc---hHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHhc
Confidence 6 45444321111111 122233444555554444443 4667777777766543
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.83 E-value=2.4e-08 Score=103.47 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
-..|...|..+...++.++|..++.+|-.++|..+..|+..|.++...|+..+|.+.|..|+.+||+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44577777888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccc
Q 011417 94 AMGKFKEALK--DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (486)
Q Consensus 94 ~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~ 143 (486)
..|+..-|.. .+..|++++|.++++|+.+|.+..+.|+ .+.|.+.|..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd--~~~Aaecf~a 779 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD--SKQAAECFQA 779 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc--hHHHHHHHHH
Confidence 9998877777 8999999999999999999999988777 4566665543
No 126
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.83 E-value=3.7e-08 Score=101.19 Aligned_cols=212 Identities=18% Similarity=0.229 Sum_probs=149.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (486)
..+.-+..+..+|..|...++|.+|+..|++|+.+ +|.-+.++.+||.+|...|++++|..++++|+++-
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 34555555667999999999999999999999986 45667889999999999999999999999999763
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhhHHHHHhhcCcccc
Q 011417 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PND---PDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (486)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~l~~~~~~~A~~~~~~~ 144 (486)
|+-+..+.+++.++..++++++|...+++++++- +++ +....+++.++...|+ +++|..+++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk--~~ea~~~~k-- 391 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK--YKEAEELYK-- 391 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc--hhHHHHHHH--
Confidence 3456678999999999999999999999999873 223 4457778888866665 777777777
Q ss_pred cccccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcC----CCcccccCCC
Q 011417 145 RHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRAL----PSLVDIDIPD 220 (486)
Q Consensus 145 ~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~e----p~~~~i~~~~ 220 (486)
+++.+.....+..... .-..+..+.....+.+. ..++..++..+..++... |++...-.
T Consensus 392 ----------~ai~~~~~~~~~~~~~---~~~~l~~la~~~~~~k~--~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~-- 454 (508)
T KOG1840|consen 392 ----------KAIQILRELLGKKDYG---VGKPLNQLAEAYEELKK--YEEAEQLFEEAKDIMKLCGPDHPDVTYTYL-- 454 (508)
T ss_pred ----------HHHHHHHhcccCcChh---hhHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHhCCCCCchHHHHH--
Confidence 6776544333321111 11223333333322222 344777788887777332 22222222
Q ss_pred CCceEEEccCCCChHHHHHHHHH
Q 011417 221 GKHFTVCGDVHGQFYDLLNIFEL 243 (486)
Q Consensus 221 ~~~~~v~GDihG~~~~l~~~l~~ 243 (486)
.+....+-.|++++..++...
T Consensus 455 --nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 455 --NLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred --HHHHHHHHcccHHHHHHHHHH
Confidence 256666788888888887654
No 127
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.83 E-value=9.4e-08 Score=79.48 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRR 88 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 88 (486)
.++++.|..+-..|+.++|+..|+++++...+. ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999976554 678999999999999999999999999999888 78888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~ 110 (486)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.82 E-value=3.8e-08 Score=76.94 Aligned_cols=91 Identities=32% Similarity=0.502 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998666
Q ss_pred hhHHHHHhhcCcc
Q 011417 130 KKLKFEEAIAVPE 142 (486)
Q Consensus 130 ~~~~~~~A~~~~~ 142 (486)
++ +++|...+.
T Consensus 82 ~~--~~~a~~~~~ 92 (100)
T cd00189 82 GK--YEEALEAYE 92 (100)
T ss_pred Hh--HHHHHHHHH
Confidence 65 778877766
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=1.1e-07 Score=94.27 Aligned_cols=124 Identities=22% Similarity=0.174 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...|+++..+-..+.+++..++..+|++.+++++.++|+.+..+.++|.+|.+.|++.+|+..+.+.+..+|+++..|..
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 35678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
||.+|..+|+..+|...+.....+......+...+.......+.
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~ 457 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKL 457 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999998888777776666666555444
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.80 E-value=5e-08 Score=101.17 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ--DASKAIEIDPRYPKGY 85 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~ 85 (486)
.-.+..+..++..|..+...|++++|.+.|..|+.++|+++.+...+|.++...|+-.-|.. .+..++++||.+.++|
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 34566788899999999999999999999999999999999999999999999998888887 9999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
+.+|.++.++|+.++|.++|+.|+++.+.+|.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999998875
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=1.4e-08 Score=90.98 Aligned_cols=87 Identities=20% Similarity=0.344 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
+..+.+++++|..+...|++++|+.+|+++++..|+. ..+++.+|.++..+|++++|+..++++++..|++..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4567889999999999999999999999999987764 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 011417 122 VKECEKAVKK 131 (486)
Q Consensus 122 l~~~~~~l~~ 131 (486)
++.++..+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 9999877665
No 132
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.3e-07 Score=85.78 Aligned_cols=108 Identities=26% Similarity=0.305 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQ----------NAVYYANRAFAHTKLEEYGSAIQDASK 73 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (486)
..+.++...|+.+++.|+|.+|...|+.|+.. .|. ....+.|.+.|+...|+|.++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34667999999999999999999999999752 333 356789999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
.+..+|++..+|+..|.++....+.++|.+.|.++++++|.-..+.
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999999999866543
No 133
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=7.9e-08 Score=90.50 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=122.5
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PK 83 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~ 83 (486)
......-++..+|..|+..|-++.|...|....+...--..+...|..+|....++++|++..++..++.+.. +.
T Consensus 102 T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 102 TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 4445677888899999999999999999988776555557889999999999999999999999999998764 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.|+.+|..+....+.+.|+..+.+|++.+|++..+...+|.+... +++|.+|+..++ .+++.+|.|
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~--~g~y~~AV~~~e------------~v~eQn~~y 247 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA--KGDYQKAVEALE------------RVLEQNPEY 247 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh--ccchHHHHHHHH------------HHHHhChHH
Confidence 789999999999999999999999999999999999999999844 445899998888 778888877
Q ss_pred CC
Q 011417 164 SG 165 (486)
Q Consensus 164 ~~ 165 (486)
.+
T Consensus 248 l~ 249 (389)
T COG2956 248 LS 249 (389)
T ss_pred HH
Confidence 44
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=103.22 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
.+.+.+.+|...+..++|++|..+++.+++++|-....|+++|.+..++++++.|..+|.+.+.++|++..+|.+++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 34456666777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+++-.+|...+++|++.+-+++..|.+...+....+. +++|+..+.
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge--~eda~~A~~ 611 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE--FEDAIKAYH 611 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc--HHHHHHHHH
Confidence 999999999999999999998888888888877766665 777777766
No 135
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.9e-08 Score=90.79 Aligned_cols=101 Identities=38% Similarity=0.568 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
..+..+...|+.++...+|..|+.+|.+||.++|..+..|.++|.||+++.+++.+.....+|++++|+...+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 011417 92 YLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~ 112 (486)
......|++|+..+++|..+.
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHhhccccHHHHHHHHHHHHH
Confidence 999999999999999997663
No 136
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.77 E-value=2.5e-07 Score=81.71 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=46.0
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
++.+++|+||+...+..+++........+.++++||++ +.+++..+..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 58999999999977666555443332456799999999 467777775543 248899999997
No 137
>PRK11906 transcriptional regulator; Provisional
Probab=98.77 E-value=1e-07 Score=95.11 Aligned_cols=137 Identities=17% Similarity=0.079 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 011417 16 ELKALANEAFRAK---KYSQAIDLYSQAI---ELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIEIDPR 80 (486)
Q Consensus 16 ~~~~~g~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~ 80 (486)
.++..|...+..+ ..+.|+.+|.+|+ +++|+++.+|..+|.|++.. ....+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577777776655 4567999999999 99999999999999998865 2456899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccC
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (486)
++.++..+|.++...++++.|...|++|+.++|+.+.+++..+.+....|+ .++|....+ ++++++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~--~~~a~~~i~------------~alrLs 402 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK--IEEARICID------------KSLQLE 402 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHhccC
Confidence 999999999999999999999999999999999999999999998866666 688888877 888888
Q ss_pred CcCCCC
Q 011417 161 PQYSGA 166 (486)
Q Consensus 161 ~~~~~~ 166 (486)
|.-.++
T Consensus 403 P~~~~~ 408 (458)
T PRK11906 403 PRRRKA 408 (458)
T ss_pred chhhHH
Confidence 864433
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=9.5e-08 Score=90.02 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Q 011417 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG---KFKEALKDF 105 (486)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~ 105 (486)
+.++.+.-++..+..+|++++-|..||.+|+.+|++..|...|.+|+++.|++++.+..+|.++.... .-.++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46777788899999999999999999999999999999999999999999999999999998777554 347899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 106 QQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++++.+|++..+.+.|+..+...++ |.+|+...+
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--~~~A~~~Wq 251 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--YAEAAAAWQ 251 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 99999999999999999999855554 899998888
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.77 E-value=4.5e-08 Score=74.18 Aligned_cols=66 Identities=32% Similarity=0.621 Sum_probs=40.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (486)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (486)
..+|.+.+++++|++++++++.++|+++.+|+.+|.++..+|++++|++.++++++..|+++.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666666655443
No 140
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=2.5e-08 Score=74.45 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=38.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+..|+|++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 44566666666666666666666666666666666666666666666666666666555554444
No 141
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=3.4e-07 Score=77.43 Aligned_cols=107 Identities=28% Similarity=0.389 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (486)
.+..++..|...++.|+|++|++.|+......|-. ..+...||.+|+..+++++|+..+++-++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35679999999999999999999999999888764 68899999999999999999999999999999875 5799
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 011417 87 RRGAAYLAMGK---------------FKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 87 ~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~ 119 (486)
..|.++..+.. ..+|...|++.++.-|++.-+-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 99999999887 8899999999999999987653
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.76 E-value=9.1e-08 Score=101.49 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=100.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+..+..+|++|..|..+|+|++|-.+|.++++.+|++ .-.++.+|..|.+.|+++.|+.+|++++...|++.++...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34556778888888888888888888888888888887 77788888888888888888888888888888888888888
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 89 GAAYLAMG----KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 89 g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
|.+|...+ ..+.|..+..++++..|.+.++|..++.++.....
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 88888775 55778888888888888888888888877654443
No 143
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.74 E-value=6.4e-08 Score=73.33 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=65.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 21 ANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 21 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
...|++.++|++|++.++++++++|+++.+|..+|.++..+|++.+|++.++++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999999888766543
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.72 E-value=6.4e-08 Score=96.36 Aligned_cols=73 Identities=25% Similarity=0.280 Sum_probs=65.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY---YANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
.....+|+.+.+++++|..|+..|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 66 ~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 66 DGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455788889999999999999999999999999999999998855 999999999999999999999999997
No 145
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.72 E-value=1.9e-07 Score=82.02 Aligned_cols=149 Identities=21% Similarity=0.346 Sum_probs=90.2
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
++.++||+|++...+.++++... ..+.++++||++|+ .+++..+... .+++++||||..........
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~---~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~~ 68 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN---EPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNENDE 68 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT---TESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEECT
T ss_pred EEEEEeCCCCChhHHHHHHHHhc---CCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhhc
Confidence 58999999999999999998873 34579999999993 7777776444 69999999996554332211
Q ss_pred hhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCC
Q 011417 303 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 382 (486)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~ 382 (486)
. + +.....+ ..-+.+++++||.+ ..
T Consensus 69 ~------~----------~~~~~~~-~~~~~~i~~~H~~~-~~------------------------------------- 93 (156)
T PF12850_consen 69 E------Y----------LLDALRL-TIDGFKILLSHGHP-YD------------------------------------- 93 (156)
T ss_dssp C------S----------SHSEEEE-EETTEEEEEESSTS-SS-------------------------------------
T ss_pred c------c----------cccceee-eecCCeEEEECCCC-cc-------------------------------------
Confidence 0 0 1111111 11256899999966 21
Q ss_pred CCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCC-eEEEEecCCCCCCCCCCeEEEEEE
Q 011417 383 GPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDG-KLITVFSAPNYCDQMGNKGAFIRF 452 (486)
Q Consensus 383 ~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~-~~~tifsa~~y~~~~~n~~a~~~~ 452 (486)
...+.+.+.+.+...+. ++++-||.-... .+..++ .+++.=|.... ..+...+++++
T Consensus 94 --------~~~~~~~~~~~~~~~~~-~~~~~GH~H~~~--~~~~~~~~~~~~Gs~~~~--~~~~~~~~~i~ 151 (156)
T PF12850_consen 94 --------VQWDPAELREILSRENV-DLVLHGHTHRPQ--VFKIGGIHVINPGSIGGP--RHGDQSGYAIL 151 (156)
T ss_dssp --------STTTHHHHHHHHHHTTS-SEEEESSSSSEE--EEEETTEEEEEE-GSSS---SSSSSEEEEEE
T ss_pred --------cccChhhhhhhhcccCC-CEEEcCCcccce--EEEECCEEEEECCcCCCC--CCCCCCEEEEE
Confidence 01245567788889999 999999997533 233333 34444343322 12336777777
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.72 E-value=3.7e-08 Score=73.49 Aligned_cols=67 Identities=25% Similarity=0.430 Sum_probs=61.6
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 58 HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (486)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 124 (486)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999888776664
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=1.2e-07 Score=78.74 Aligned_cols=93 Identities=31% Similarity=0.395 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQK 121 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (486)
+.+++.+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999886 5789999999999999999999999999999886 567888
Q ss_pred HHHHHHHHhhHHHHHhhcCcc
Q 011417 122 VKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 122 l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++.++...++ +++|...+.
T Consensus 82 ~~~~~~~~~~--~~~A~~~~~ 100 (119)
T TIGR02795 82 LGMSLQELGD--KEKAKATLQ 100 (119)
T ss_pred HHHHHHHhCC--hHHHHHHHH
Confidence 8888866555 778877777
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.5e-07 Score=82.88 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=110.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.++|.+..++...--..-.+|+--+|++.+.+-++..+.+.++|..++.+|...|+|++|.-+++..+-..|-++..+..
T Consensus 114 ~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 114 EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 46677777888887888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 88 RGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 88 lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
+|.+++-+| +++-|.++|.++++++|.+..+++.+-.+-..+.
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 999999887 4578999999999999988888877776655444
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=2.2e-07 Score=80.73 Aligned_cols=128 Identities=23% Similarity=0.165 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGY 85 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 85 (486)
+.+...+..+...+..++...+...+++.+..+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 446667777888888999999999999999999998 6778889999999999999999999999987665 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++|.++...|++++|+..++. +.-.+-.+.++..+|.++...|+ +++|+..|+
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~ 142 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD--YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 8999999999999999999976 33344556778888999866665 788887665
No 150
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-07 Score=89.52 Aligned_cols=113 Identities=31% Similarity=0.488 Sum_probs=100.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
.+.+.-+.+..+...|+.|++.++|..|+.+|.++|+..-. ++..|.|+|.|.+.+|+|..|+..+.+|+.++|++
T Consensus 73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 34445567888999999999999999999999999998544 36779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
..++++-|.|++.+.++++|..+++..+..+-+...+
T Consensus 153 ~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 153 LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999999999999998876554443
No 151
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.70 E-value=2.1e-07 Score=98.07 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=106.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 011417 4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (486)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (486)
++...++|..+.+++.+|.+|-+.|+.++|+...-.|-.++|.+.+.|..++....++|.+++|.-+|.+||+.+|.+.+
T Consensus 163 ~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 163 MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE 242 (895)
T ss_pred HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
..+..+.+|.+.|++..|+..|.+++.++|
T Consensus 243 ~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=5.6e-07 Score=78.21 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
+-...+.+.+|..++..|++++|+..|++++...|+. ..+...+|.++...|++++|+..++. +.-.+-.+.++..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 3446778899999999999999999999999988665 56789999999999999999999977 3334456778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al 109 (486)
+|.++...|++++|+..|++|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999885
No 153
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.8e-07 Score=91.36 Aligned_cols=134 Identities=19% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
...+.+-.+++++.|..+-..|+.++|+.+|-+.-.+--+++.+++.++.+|..+.+..+|++++.++..+-|+++..+.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 34566778899999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.||.+|-+.|+-.+|.+++-...+.-|.+.+...+|+..| +...-+++|+.+++
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy--idtqf~ekai~y~e 650 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY--IDTQFSEKAINYFE 650 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH--HhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888 44444799999999
No 154
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=2.2e-07 Score=93.27 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI----EIDPRYPKGYYR 87 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~ 87 (486)
+........|..++..|++++|+..++++++.+|++..++.. +..+...+.+..+.....+++ ..+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 445567788999999999999999999999999999877765 555555554443333344433 455666677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|.+.++++++++|+++.++..++.++...++ +++|+..++
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--~~eA~~~l~ 172 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--FKEGIAFME 172 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 88888888888888888888888888888888888888866555 677777777
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.6e-07 Score=83.71 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
.-++.+.+.-++..|..|-..|-+.-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...+++||.+..+..
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
+.|..++--|+|+-|.+.+.+-.+-+|++|--..++-
T Consensus 138 NRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 138 NRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred ccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999999999999986444443
No 156
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.3e-08 Score=91.66 Aligned_cols=131 Identities=11% Similarity=0.181 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
....++.+..++.+|-+..+...|+..|.+.++..|.+.......|.++..++++++|++.|+.+++.+|.+.++.-.+|
T Consensus 252 q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeee
Confidence 34457778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.-|+.-++.+-|+.+|++.+++.-.+++...+++.|...-++ ++.++..++
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ--~D~~L~sf~ 382 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ--IDLVLPSFQ 382 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc--hhhhHHHHH
Confidence 999999999999999999999999999999999988866555 555555554
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=1e-07 Score=95.00 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=66.5
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG---YYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
.+|+++.+|+++|.+|+.+|+|++|+..|++|++++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999865 999999999999999999999999997
No 158
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.3e-07 Score=89.91 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=94.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE----------- 76 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------- 76 (486)
..++.+..++..+|+.+.+.++.++|+-.|+.|..+.|...+.|..|-.+|...|++.+|......++.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTL 407 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhh
Confidence 345667788899999999999999999999999999999999999999999888887755555555444
Q ss_pred -------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 77 -------------------------IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 77 -------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
++|....+...+|.++...|++++++..+++++...|++ ..+..++.+..+.+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 445555555555555555555555555555555544443 344555555544443
Q ss_pred HHHHHhhcCcccccccccccccccccccCCcC
Q 011417 132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 132 ~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+.+|...|. .++.++|..
T Consensus 487 --~Q~am~~y~------------~ALr~dP~~ 504 (564)
T KOG1174|consen 487 --PQKAMEYYY------------KALRQDPKS 504 (564)
T ss_pred --HHHHHHHHH------------HHHhcCccc
Confidence 445554444 777777754
No 159
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.66 E-value=2.2e-07 Score=101.77 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=56.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (486)
.+|..+...|+|++|++.|+++++.+|+++.++..++..|...++.++|++.+++++..+|++... ..++.++...+++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~ 185 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchH
Confidence 334455555555555555555555555555555555555555555555555555555555553332 3333333334444
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.+|++.++++++.+|++.++...+..++...+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44555555555555555555554444443333
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=1.1e-06 Score=82.02 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 88 (486)
...|+.|..+++.|+|..|...|..-++..|+. +.+++-||.+++.+|+|++|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 348999999999999999999999999999986 7889999999999999999999999999988775 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
|.+...+|+.++|...|+++++.-|+.+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999999876543
No 161
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=4.5e-07 Score=85.48 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
-...++..+..+|-...+|++|++.-++..++.+.. +..|+.+|..+....+.+.|+..+++|++.+|+...+-.
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi 218 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI 218 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh
Confidence 345678889999999999999999999999998875 667999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|.++...|+|+.|++.++++++.+|+. +++...|..||..+|+ .+++.....
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~--~~~~~~fL~ 273 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK--PAEGLNFLR 273 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 99999999999999999999999999987 5678889999988887 466665555
No 162
>PRK11906 transcriptional regulator; Provisional
Probab=98.65 E-value=5.8e-07 Score=89.78 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCcHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011417 8 NSSVSRAEELKALANEAFRA---------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (486)
.-+|..+.++..+|.+++.. .+..+|++..++|++++|.++.++..+|.++...++++.|...|++|+.++
T Consensus 289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 45677788888888888754 345689999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
|+.+.+|+..|.++...|+.++|.+..++|++++|.-..+-
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 99999999999999999999999999999999999876553
No 163
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.6e-07 Score=87.12 Aligned_cols=233 Identities=12% Similarity=-0.007 Sum_probs=156.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 97 (486)
.++|.+|++.|-+.+|.+.++.+++..|. ++.+..|+.+|.+..+...|+..+...++..|.+...+...|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 47899999999999999999999998887 88889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCccHHH
Q 011417 98 FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDF 177 (486)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~ 177 (486)
+++|.+.|+.+++.+|.+.++..-++..+..-++ .+.|+.++. +.+.+-.....-..+.+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~--PE~AlryYR------------RiLqmG~~speLf~Nig------ 365 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN--PEMALRYYR------------RILQMGAQSPELFCNIG------ 365 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCC--hHHHHHHHH------------HHHHhcCCChHHHhhHH------
Confidence 9999999999999999999987777766644443 677777776 55544221111111111
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcC--CCCCCCCeEE
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNG--LPSEENPYLF 255 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~--~~~~~~~~~~ 255 (486)
-.....++++ -++.-+..+......+..-..+.-+.+.-.+-+|| +....+.|+.+- .+.....++-
T Consensus 366 -----LCC~yaqQ~D--~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD----~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 366 -----LCCLYAQQID--LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD----FNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred -----HHHHhhcchh--hhHHHHHHHHhhccCcchhhhhhhccceeEEeccc----hHHHHHHHHHHhccCcchHHHHHh
Confidence 0001111111 13333444444444333333443333333455566 444555555431 1222233666
Q ss_pred cccccCCCCChHHHHHHHHhchhcCCC
Q 011417 256 NGDFVDRGSFSVEVILTLFAFKCMCPS 282 (486)
Q Consensus 256 lGd~vdrG~~~~e~l~~l~~lk~~~p~ 282 (486)
||=+--|--+-.+.-.++-+-+...|.
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 665666666667777777777666554
No 164
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.61 E-value=3.8e-07 Score=93.08 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..-.+++..+...+..++|...++..++.++..|+..+.....|..+..+|+-++|......++..|+.+..+|+.+|.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
++..-.+|++|+++|+.|+..+|+|...+.-++.+..+++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888888777763
No 165
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=4e-07 Score=91.37 Aligned_cols=101 Identities=19% Similarity=0.117 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYYR 87 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~ 87 (486)
.....+..+|..+...|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|..+ ..|..
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~ 191 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWH 191 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHH
Confidence 33334444444555555555555555555555555555555555555555555555555555554443221 12334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
+|.++...|++++|+..|++++...
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccc
Confidence 4555555555555555555544333
No 166
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.59 E-value=5.5e-07 Score=92.34 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY--ANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYYR 87 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~ 87 (486)
+++..+...|..+...|++++|++.++++++..|++.... ..........++.+.+++.++++++.+|+++ ..+..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4678899999999999999999999999999999987532 3333444556888999999999999999999 88899
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQ--QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|.++|+ ++++..|+... ...++.++..+++ .++|..+++
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~--~~~A~~~~~ 394 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD--KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999 68888888766 4599999977777 677777666
No 167
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=6.9e-07 Score=77.98 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 011417 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-- 97 (486)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 97 (486)
++.|.+.++.....+|.+++++++-|.++..+.+ +++|+.-|++|+.++|+..++++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999887644 4678888999999999999999999999998875
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 98 ---------FKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 98 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
|++|..+|++|...+|++...+..|..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 6889999999999999998766555544
No 168
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.58 E-value=1.3e-06 Score=89.23 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-HHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR-AFAHTKLEEYGSAIQDASKAIEIDPRYPKGY-YRRG 89 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg 89 (486)
..+...+..|...+..|+|++|.+...++-+..+ .+..++.+ +.+..+.|+++.|..+++++.+.+|++..+. ...+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a 160 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRV 160 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3556678889999999999999988877655433 35555555 5565999999999999999999999986444 4458
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|.+.++++.+.+|+++.++..++.++...++ +++|+..+.
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd--w~~a~~~l~ 211 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA--WSSLLDILP 211 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 999999999999999999999999999999999999966655 889987776
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=1.1e-06 Score=87.96 Aligned_cols=117 Identities=21% Similarity=0.219 Sum_probs=106.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 101 (486)
..+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.++++.+|.+...+...|..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3344568999999999999988876 5667999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccc
Q 011417 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (486)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~ 143 (486)
++..++|.+..|++...|+.|+.+|..+++ ++.|+.....
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d--~e~ALlaLNs 293 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGD--FENALLALNS 293 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCC--HHHHHHHHhc
Confidence 999999999999999999999999977777 8999987763
No 170
>PRK09453 phosphodiesterase; Provisional
Probab=98.58 E-value=2.2e-07 Score=84.08 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=52.3
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCC--------hHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSF--------SVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~--------~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++.+++|+||+...+.++++..... ..+.++++||++|+|++ +.+++..|..+ +..+++++||||..
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~GNhD~~ 76 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRGNCDSE 76 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEccCCcch
Confidence 5899999999999988888765322 34579999999999874 46677666544 24689999999964
Q ss_pred c
Q 011417 295 S 295 (486)
Q Consensus 295 ~ 295 (486)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 3
No 171
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=2.2e-06 Score=87.82 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGAA 91 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~ 91 (486)
.+......|...+..|+++.|.+.+.++.+..|+....+...|.++.++|+++.|..+++++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 4566678889999999999999999999999999889999999999999999999999999999999886 466667999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+...|++++|.+.+++.++..|+++.++..++.++...++ +++|...+.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d--~~~a~~~l~ 211 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA--WQALDDIID 211 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 9999999999999999999999999999999999966665 788888776
No 172
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.2e-07 Score=87.50 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
...+.++|.++.+.++|.+|+.++.++|+++|++..+++..|.++..+++|+.|+..|++|++++|+|-.+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HcCCHHHH-HHHHHHHHHhCC
Q 011417 94 AMGKFKEA-LKDFQQVKKLSP 113 (486)
Q Consensus 94 ~~g~~~~A-~~~~~~al~~~p 113 (486)
+..++.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 87777654 677887776544
No 173
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-06 Score=84.45 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH----------------------------------H
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR----------------------------------A 55 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------------------------------g 55 (486)
-+++...+..+|.+++..|++++|+--|+++.-++|......-.. +
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 456677889999999999999999999999999998865544333 3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Q 011417 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFE 135 (486)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~ 135 (486)
...+..++++.|+...+|+|..+|++..++...|.++..+++.++|+-.|+.|..+.|..-+.+..+-.+|.+.++ +.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~--~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR--FK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--HH
Confidence 4445566777999999999999999999999999999999999999999999999999999888888888866555 67
Q ss_pred HhhcCcc
Q 011417 136 EAIAVPE 142 (486)
Q Consensus 136 ~A~~~~~ 142 (486)
+|.....
T Consensus 386 EA~~~An 392 (564)
T KOG1174|consen 386 EANALAN 392 (564)
T ss_pred HHHHHHH
Confidence 7776554
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=7.7e-08 Score=75.17 Aligned_cols=80 Identities=33% Similarity=0.527 Sum_probs=70.0
Q ss_pred HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHh
Q 011417 60 KLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (486)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A 137 (486)
..|+|++|+..++++++.+|. +...++.+|.+|+..|+|++|+..+++ .+.+|.+...++.+|.++..+++ +++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~--y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK--YEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT---HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC--HHHH
Confidence 368999999999999999995 567788899999999999999999999 88889998999999999977776 8999
Q ss_pred hcCcc
Q 011417 138 IAVPE 142 (486)
Q Consensus 138 ~~~~~ 142 (486)
+..++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 175
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.54 E-value=1.1e-06 Score=75.43 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=77.4
Q ss_pred eEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChH--HHHHHHHhchhcCCCeEEEeccCCcccccccccC
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~--e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (486)
+.+++|+||... .+ . ....+.++++||++++|..+. +.+.++..++ . ..+++++||||....
T Consensus 2 i~~isD~H~~~~----~~---~-~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~~~----- 65 (135)
T cd07379 2 FVCISDTHSRHR----TI---S-IPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLTLD----- 65 (135)
T ss_pred EEEEeCCCCCCC----cC---c-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCcCC-----
Confidence 789999999987 11 1 123456999999999986532 3444444432 2 236789999995311
Q ss_pred ChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCC
Q 011417 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG 381 (486)
Q Consensus 302 ~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~ 381 (486)
.-+.+++++||.+ ... .+..+
T Consensus 66 ----------------------------~~~~~ilv~H~~p-~~~----------------------~~~~~-------- 86 (135)
T cd07379 66 ----------------------------PEDTDILVTHGPP-YGH----------------------LDLVS-------- 86 (135)
T ss_pred ----------------------------CCCCEEEEECCCC-CcC----------------------ccccc--------
Confidence 1245799999844 110 00000
Q ss_pred CCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCce
Q 011417 382 RGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYE 423 (486)
Q Consensus 382 ~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~ 423 (486)
.....|.+.+.+++++.+. +++|-||.-...|+.
T Consensus 87 -------~~~~~g~~~~~~~~~~~~~-~~~i~GH~H~~~~~~ 120 (135)
T cd07379 87 -------SGQRVGCEELLNRVQRVRP-KLHVFGHIHEGYGAE 120 (135)
T ss_pred -------cCcccCCHHHHHHHHHHCC-cEEEEcCcCCcCcee
Confidence 0124567789999999999 999999999877776
No 176
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.52 E-value=1.2e-06 Score=81.49 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=70.5
Q ss_pred ceEEEccCCCChHHHH-HHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccc--
Q 011417 223 HFTVCGDVHGQFYDLL-NIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI-- 299 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~-~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~-- 299 (486)
++.++||+||++.... +.++. .. .+.++++||+++. +.+++..|..+ |..++.++||||.......
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~--~~--pD~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~ 70 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHL--LQ--PDLVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYDATFRK 70 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhc--cC--CCEEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCcccccccccc
Confidence 4899999999987642 23332 22 3579999999864 56777776655 3458889999997553210
Q ss_pred ------------------cC------------------------C-hhhhhhhcc-HHHHHHHHHHhhcccccceeCCcE
Q 011417 300 ------------------YG------------------------F-EGEVRSKLS-ETFVELFAEVFCCLPLAHVLNQKV 335 (486)
Q Consensus 300 ------------------~~------------------------~-~~e~~~~~~-~~~~~~~~~~~~~lp~~~~i~~~~ 335 (486)
++ + ..+++..|+ ....+.+...++.++.+......|
T Consensus 71 k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~V 150 (238)
T cd07397 71 KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLI 150 (238)
T ss_pred hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeE
Confidence 00 0 113333342 245566777888887444445589
Q ss_pred EEEeCcc
Q 011417 336 FVVHGGL 342 (486)
Q Consensus 336 ~~vHgGi 342 (486)
|+.|+++
T Consensus 151 liaH~~~ 157 (238)
T cd07397 151 LLAHNGP 157 (238)
T ss_pred EEeCcCC
Confidence 9999998
No 177
>PRK15331 chaperone protein SicA; Provisional
Probab=98.51 E-value=4.3e-07 Score=78.54 Aligned_cols=101 Identities=14% Similarity=-0.008 Sum_probs=92.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 40 AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 40 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
+..+.++.-+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..|..+++++|...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33455666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhcCcc
Q 011417 120 QKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 120 ~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..+.|+..+++ .++|...++
T Consensus 109 f~agqC~l~l~~--~~~A~~~f~ 129 (165)
T PRK15331 109 FFTGQCQLLMRK--AAKARQCFE 129 (165)
T ss_pred chHHHHHHHhCC--HHHHHHHHH
Confidence 999999988887 688888777
No 178
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=88.93 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.++++......|..+...|+.++|...++++++. |.++......+.+ ..++.+++++.+++.++.+|+++..+..+|
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4557788899999999999999999999999994 5556555444444 449999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...+++++|.++|+++++..|++.. +..++.++...++ .++|..+++
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~--~~~A~~~~~ 385 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK--PEEAAAMRR 385 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999765 5578888877776 677877777
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=1.5e-07 Score=72.34 Aligned_cols=63 Identities=29% Similarity=0.450 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
+.++.++|.+|..+|++++|+.+|++++++. |..+.++.++|.++..+|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444444444444444330 11133445555555555555555555555544
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=3.7e-07 Score=70.08 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
.|+.+.++.++|.+|...|+|++|+.+|++++++. |..+.++.++|.++..+|++++|++.+++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36788999999999999999999999999999762 233678999999999999999999999999986
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.49 E-value=1.5e-06 Score=90.94 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=93.4
Q ss_pred CCcHHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 8 NSSVSRAEELKALANEAFRA--------KKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
..+|+.+.++..++.++... .+..+|.+..++++.+ +|.++.++.-+|..+...|++++|...+++|+++
T Consensus 370 ~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 370 KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 35677788888877777553 2345666667776664 7788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
+| +..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99 5899999999999999999999999999999999986
No 182
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.42 E-value=1.4e-06 Score=89.13 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=122.5
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..|++.+.+..+|..+...|+-++|..+...+++.++.+...|.-+|.++...++|++|+.+|+.|+.++|+|...|.-+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.+..++++++.....-.+.++..|.+-..|..++.++..++. +..|+...+
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~--y~~A~~il~ 167 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE--YKMALEILE 167 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999999999999999999999999989888888877776 677766554
No 183
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=2.2e-06 Score=88.72 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------HHHccCH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA----------------------------HTKLEEY 64 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~----------------------------~~~~g~~ 64 (486)
....|.....+|...|+..+|.....+-++ .|.++..|..+|.+ ....++|
T Consensus 423 rlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 423 RLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDF 501 (777)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhH
Confidence 344556666677777777777777666666 45555555554433 3446899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 65 GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|..+++.+++++|-....||.+|.+..++++++.|.++|.+++.++|++.++|.+++.++..+++ ..+|...+.
T Consensus 502 s~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~--k~ra~~~l~ 577 (777)
T KOG1128|consen 502 SEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK--KKRAFRKLK 577 (777)
T ss_pred HHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh--hHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987776 466665555
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=2.4e-06 Score=85.70 Aligned_cols=95 Identities=24% Similarity=0.319 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
+....+|..+...++-.+|+..+.++++..|.++..+...|..+...++++.|+..+++|+++.|++-.+|+.|+.+|..
T Consensus 201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 011417 95 MGKFKEALKDFQQVK 109 (486)
Q Consensus 95 ~g~~~~A~~~~~~al 109 (486)
+|++++|+..++.+-
T Consensus 281 ~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 281 LGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHhcCc
Confidence 999999998877543
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.40 E-value=1.7e-06 Score=92.10 Aligned_cols=132 Identities=23% Similarity=0.229 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-----------------------------------
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------------------------- 53 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------------------------- 53 (486)
-++.-+.++..+|..|....+...|..+|++|.+++|.+++++-.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 355667778888888888788888889999988888876655444
Q ss_pred -HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 54 -RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 54 -lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
+|..|...+++-.|+..|+.|+..+|.+..+|..+|.+|...|+|.-|++.|.+|..++|.+.-..+..+.+...+|+
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk- 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK- 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-
Confidence 455555566667888888889999999999999999999999999999999999999999999888888888877666
Q ss_pred HHHHhhcCcc
Q 011417 133 KFEEAIAVPE 142 (486)
Q Consensus 133 ~~~~A~~~~~ 142 (486)
|.+|+..+.
T Consensus 646 -Ykeald~l~ 654 (1238)
T KOG1127|consen 646 -YKEALDALG 654 (1238)
T ss_pred -HHHHHHHHH
Confidence 788887665
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.39 E-value=2.8e-06 Score=81.02 Aligned_cols=102 Identities=26% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 011417 48 AVYYANRAFAH-TKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQ 120 (486)
Q Consensus 48 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (486)
...++..|..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888877 56799999999999999999998 5899999999999999999999999999998874 67888
Q ss_pred HHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 121 KVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 121 ~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.++.++..+++ +++|...++ ++++..|+.
T Consensus 222 klg~~~~~~g~--~~~A~~~~~------------~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGD--TAKAKAVYQ------------QVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCC
Confidence 89999876655 788888887 666666654
No 187
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.36 E-value=2.4e-05 Score=70.33 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=73.4
Q ss_pred eEEEccCC-CChH-----HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccc
Q 011417 224 FTVCGDVH-GQFY-----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMN 297 (486)
Q Consensus 224 ~~v~GDih-G~~~-----~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~ 297 (486)
+.+++|.| |... .+.++++. ...+.++.+||+++ .+++.++..+. ..++.++||||...
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~----~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~-- 66 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP----GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL-- 66 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc----CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc--
Confidence 78999999 5543 34555543 23457999999987 77777775552 25889999999631
Q ss_pred cccCChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccC
Q 011417 298 KIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWS 374 (486)
Q Consensus 298 ~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~ 374 (486)
.+|....+ +.+++++||..-.+ |
T Consensus 67 --------------------------~lp~~~~~~~~g~~i~l~HG~~~~~---------------------------~- 92 (178)
T cd07394 67 --------------------------NYPETKVITVGQFKIGLIHGHQVVP---------------------------W- 92 (178)
T ss_pred --------------------------cCCCcEEEEECCEEEEEEECCcCCC---------------------------C-
Confidence 35555444 35899999842000 0
Q ss_pred CCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccc
Q 011417 375 DPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKD 419 (486)
Q Consensus 375 dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~ 419 (486)
.+.+.+.++.+..+. ++||-||+-.+
T Consensus 93 ------------------~~~~~~~~~~~~~~~-dvii~GHTH~p 118 (178)
T cd07394 93 ------------------GDPDSLAALQRQLDV-DILISGHTHKF 118 (178)
T ss_pred ------------------CCHHHHHHHHHhcCC-CEEEECCCCcc
Confidence 023456777788999 99999999863
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.4e-06 Score=83.02 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-------------- 76 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 76 (486)
.+..+....+|.+++..|+|++|+..|+-+.+.+..+++.+.+||.|++-+|.|.+|.....++-+
T Consensus 54 EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 344556778999999999999999999999988888899999999999999999999988877521
Q ss_pred hC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 77 ID------------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 77 ~~------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++ .+..+-...||.+++....|++|+..|.+++.-+|+.......++.|+.++.- ++-+.+...
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY--ydvsqevl~ 209 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY--YDVSQEVLK 209 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch--hhhHHHHHH
Confidence 11 12233456778888888899999999999999999999999999999977765 454444433
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.34 E-value=5.3e-06 Score=69.03 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKV 122 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 122 (486)
.+.+.+|.++-.+|+.++|+..|+++++...+. ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999976544 568999999999999999999999999999898 77777777
Q ss_pred HHHHHHHhhHHHHHhhcCcc
Q 011417 123 KECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 123 ~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.++...++ .++|+..+-
T Consensus 82 Al~L~~~gr--~~eAl~~~l 99 (120)
T PF12688_consen 82 ALALYNLGR--PKEALEWLL 99 (120)
T ss_pred HHHHHHCCC--HHHHHHHHH
Confidence 777766665 677776654
No 190
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.32 E-value=6.2e-06 Score=69.29 Aligned_cols=117 Identities=25% Similarity=0.342 Sum_probs=81.7
Q ss_pred EEEccCCCChHHHHHHH--HHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 225 TVCGDVHGQFYDLLNIF--ELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 225 ~v~GDihG~~~~l~~~l--~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
+++||+|+......... ... .....+.++++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~-~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD---------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALA-AAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD---------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHh-cccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce----------
Confidence 36899999998887754 221 12234569999999999998887776643444456678999999999
Q ss_pred hhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCC
Q 011417 303 EGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGR 382 (486)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~ 382 (486)
+++.|.++ .+...... +.
T Consensus 70 --------------------------------i~~~H~~~-~~~~~~~~---------------------~~-------- 87 (131)
T cd00838 70 --------------------------------ILLTHGPP-YDPLDELS---------------------PD-------- 87 (131)
T ss_pred --------------------------------EEEeccCC-CCCchhhc---------------------cc--------
Confidence 99999877 22110000 00
Q ss_pred CCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCce
Q 011417 383 GPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYE 423 (486)
Q Consensus 383 ~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~ 423 (486)
.......+...+...+. ..+|.||.-....+.
T Consensus 88 --------~~~~~~~~~~~~~~~~~-~~~~~GH~H~~~~~~ 119 (131)
T cd00838 88 --------EDPGSEALLELLEKYGV-DLVLSGHTHVYERRE 119 (131)
T ss_pred --------chhhHHHHHHHHHHhCC-CEEEeCCeecccccc
Confidence 00056788889999999 999999998755554
No 191
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.32 E-value=1.7e-05 Score=73.58 Aligned_cols=71 Identities=8% Similarity=0.145 Sum_probs=55.4
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.++.+++|+||++..+.++++.... ...+.++++||++++|+..-++..++-.+.. .+..++.++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~-~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPE-TGADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 3689999999999999999886432 2345799999999999777777777666642 235788999999964
No 192
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=1.3e-05 Score=87.54 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=102.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------------ 77 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------ 77 (486)
.+++-.+++.+|.+|-+.|++++|...|+++++.+|+++.+..++|..|... +.++|++.+.+|+..
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3445578999999999999999999999999999999999999999999999 999999999999854
Q ss_pred --------CCCCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 78 --------DPRYPKG--------------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 78 --------~p~~~~~--------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
+|++.+. +.-+=..|....+|++++..++.+++.+|+|..+...++.++...
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 3444332 223337788889999999999999999999999999999998643
No 193
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.27 E-value=2.2e-05 Score=81.74 Aligned_cols=129 Identities=16% Similarity=0.078 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
..+++.+|..|-..|++++|+++.++||+..|..++.|...|.++.+.|++.+|.++++.|-++|+.+-......+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPND-------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.|+.++|.+.+..-.+.+-+. .-.|+.+.........+++..|+..+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988665544211 123554444444444445666666554
No 194
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.26 E-value=8.4e-06 Score=83.48 Aligned_cols=126 Identities=11% Similarity=-0.016 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
..|+.-++....+++.++|+.+++++++..|+....|..+|.++.++++.+.|.+.|...++.-|.....|..|+.+-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 44555666666778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.|+.-.|...++++.-.+|++...|...-......|. .+.|...+.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn--~~~a~~lma 777 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN--KEQAELLMA 777 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888888888888888887766544444433333 455555444
No 195
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.25 E-value=1.3e-06 Score=92.91 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
...|..+|..|...++..+|+..++.|++.+|.+...|..+|.+|...|+|..|+..|.||..++|.+..+.|..+.+..
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 44577799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.+|+|.+|+..++..+........+...++.++....
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA 678 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999887777777777777664433
No 196
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=98.25 E-value=2.6e-06 Score=67.28 Aligned_cols=94 Identities=54% Similarity=0.949 Sum_probs=64.1
Q ss_pred HHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHH
Q 011417 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVL 201 (486)
Q Consensus 122 l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~ 201 (486)
+..|...+.+..|++|+.. +......+.......+..++.|.++++....++.+++..+++.|+.++.++.+++..++.
T Consensus 2 l~ec~k~ir~~~FekAI~~-d~~~~s~~e~~d~~~i~Ve~sY~GP~l~~~~it~efv~~mie~FK~~K~Lhkkyv~~Il~ 80 (95)
T PF08321_consen 2 LKECEKLIRRIAFEKAIAV-DEEKKSVSESIDLESIDVEDSYDGPRLEDEPITLEFVKAMIEWFKNQKKLHKKYVYQILL 80 (95)
T ss_dssp HHHHHHHHHHHHHSHHHHH-HHHHHSTTTS-TTSTT---SS--SS--BTTB--HHHHHHHHHHHHCT----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-CCcccCHHHhcCccceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 4456667777789999998 222333344556677888999999999966699999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccc
Q 011417 202 QTREMLRALPSLVDI 216 (486)
Q Consensus 202 ~a~~~l~~ep~~~~i 216 (486)
.+.++|+++|+++++
T Consensus 81 ~~~~llk~~PslVeI 95 (95)
T PF08321_consen 81 EAKKLLKQLPSLVEI 95 (95)
T ss_dssp HHHHHHHTS-SEEEE
T ss_pred HHHHHHHhCcCccCC
Confidence 999999999999864
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.24 E-value=4e-05 Score=67.10 Aligned_cols=119 Identities=22% Similarity=0.278 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 88 (486)
...+-.+.+|+.+...|++.+|...|++++. +..+++..+..++.+.+..+++.+|...+++..+.+|. .+.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3455688999999999999999999999986 56788999999999999999999999999999999885 57888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
|.++..+|++++|...|+.++...|.- .+....+..+...++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr 208 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGR 208 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcc
Confidence 999999999999999999999988764 555666666655554
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.22 E-value=5.8e-05 Score=69.49 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=99.0
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE-----------EYGSAIQDASKA 74 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~a 74 (486)
..+-.+.+.+.+|.++++.|+|++|+..+++.++..|++ +.+++.+|.+++.+. ...+|+..|+..
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 345567789999999999999999999999999999986 568999999876643 346899999999
Q ss_pred HHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhH
Q 011417 75 IEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKL 132 (486)
Q Consensus 75 l~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~ 132 (486)
+...|++..+ -+..|..|.+.|.|..|+..++.+++.-|+.+ +++..+..++..++..
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 9999987532 35578899999999999999999999999886 4677778888777764
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.22 E-value=3.3e-05 Score=80.53 Aligned_cols=133 Identities=16% Similarity=0.152 Sum_probs=103.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC----
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEID---- 78 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~---- 78 (486)
....+....+-.+|..+++.|++++|...|+..|+.+|++...|..+..+..... ..+.-.+.|+...+..
T Consensus 32 ~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~ 111 (517)
T PF12569_consen 32 KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD 111 (517)
T ss_pred hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc
Confidence 3445667788899999999999999999999999999999999999888872222 2233333333321000
Q ss_pred -----------------------------------------------------------------------------CCC
Q 011417 79 -----------------------------------------------------------------------------PRY 81 (486)
Q Consensus 79 -----------------------------------------------------------------------------p~~ 81 (486)
|..
T Consensus 112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence 011
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 P--KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
. -+++.+|+.|...|++++|+++.++|++..|..++.+...+.++...|+ +.+|...++
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--~~~Aa~~~~ 252 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--LKEAAEAMD 252 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 1 2568899999999999999999999999999999999999999977776 788888887
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.20 E-value=4.7e-05 Score=70.56 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYY 86 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 86 (486)
.+..|++.|...++.|+|++|+..|+++....|.. ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 67899999999999999999999999999998765 4678
Q ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHhhcCccccccccccccccc
Q 011417 87 RRGAAYLAMGK--------FKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155 (486)
Q Consensus 87 ~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~ 155 (486)
..|.++...=+ ..+|...|+..++.-|+.. ++...+-.+...+...+..-|..+.+++.+..|..-...
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 88888765422 3678999999999999874 556666666666666656666667777777777666666
Q ss_pred ccccCCc
Q 011417 156 SIEVEPQ 162 (486)
Q Consensus 156 ~l~~~~~ 162 (486)
.++..|.
T Consensus 193 v~e~y~~ 199 (254)
T COG4105 193 VLENYPD 199 (254)
T ss_pred HHhcccc
Confidence 6655443
No 201
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.20 E-value=8e-06 Score=72.63 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=46.6
Q ss_pred eEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
+.+++|+|+........+.........+.+++.||+++++..+..+. ++. ....+..|++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~--~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLL--ALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHH--hhcCCccEEEeCCCcceE
Confidence 35789999998776655432222334567999999999987765544 222 223456799999999976
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.18 E-value=0.00011 Score=69.57 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc------------------CHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLE------------------EYGSAI 68 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g------------------~~~~A~ 68 (486)
.+....+.+.+|.++++.++|++|+..+++.++.+|++ +.+++.+|.++..++ ...+|+
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~ 144 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF 144 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH
Confidence 34556678999999999999999999999999999876 677999998865543 135788
Q ss_pred HHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 011417 69 QDASKAIEIDPRYPKG-----------------YYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKECEKA 128 (486)
Q Consensus 69 ~~~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 128 (486)
..+++.++..|++..+ -+..|..|.+.|.|..|+.-++.+++.-|+. ++++..+..++..
T Consensus 145 ~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 145 RDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 9999999999986432 3456778999999999999999999998876 4678888888877
Q ss_pred HhhH
Q 011417 129 VKKL 132 (486)
Q Consensus 129 l~~~ 132 (486)
+|..
T Consensus 225 lg~~ 228 (243)
T PRK10866 225 LQLN 228 (243)
T ss_pred cCCh
Confidence 7763
No 203
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.17 E-value=1.6e-05 Score=81.49 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
+|+..-...+...++++|..++.+|-...|. ..+|...+.....+++.++|+..++++++..|+....|..+|+++.++
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence 3333334444444444444444444443333 444555555566677777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++.+.|.+.|.+.++..|..+..|..++.+....+. .-+|...++
T Consensus 699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~--~~rAR~ild 743 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ--LVRARSILD 743 (913)
T ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc--hhhHHHHHH
Confidence 777777777777777777777777777776655543 455555555
No 204
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.16 E-value=1.2e-07 Score=94.16 Aligned_cols=246 Identities=13% Similarity=-0.003 Sum_probs=170.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHH
Q 011417 191 LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI 270 (486)
Q Consensus 191 l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l 270 (486)
+.......++..+.+++..+|+...+....+...+.+++.||++.|+.+.++.. |.-...|++-|++++++....+.+
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHH
Confidence 344567888999999999999998888777778999999999999999999863 545567999999999999999999
Q ss_pred HHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccH---HHHHHHHHHhhcccccceeCCcEEEEeCccc----
Q 011417 271 LTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSE---TFVELFAEVFCCLPLAHVLNQKVFVVHGGLF---- 343 (486)
Q Consensus 271 ~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~---- 343 (486)
..+...+...|++..+.|++||.-.+...++|..++...+++ -+...+...+ .-|+....++.++=-| -++
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~~~~~~~~~-~~~i~~~y~g~~le~~-kvt~e~v 170 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVVEMKIDEED-MDLIESDYSGPVLEDH-KVTLEFV 170 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcccccccccccc-ccccccccCCcccccc-hhhHHHH
Confidence 999999999999999999999999999999998887777632 1222122211 1124444444333222 110
Q ss_pred --------------CCCCCCc-hhhcccccCCCCC-CCCcccccccCCCCCCCC-CCCCCCCCceEcCHHHHHHHHHHCC
Q 011417 344 --------------SVDGVKL-SDIKTIDRFCEPP-EEGLMCELLWSDPQPLPG-RGPSKRGVGLSFGADVTKRFLQDNS 406 (486)
Q Consensus 344 --------------~~~~~~~-~~i~~~~r~~~~~-~~~~~~~llw~dp~~~~~-~~~~~rg~~~~fg~~~~~~~l~~~~ 406 (486)
+....++ +....+.+-..+. +..+-.+..|++|...-| +.+..++.+...++.....||...+
T Consensus 171 k~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngd 250 (476)
T KOG0376|consen 171 KTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGD 250 (476)
T ss_pred HHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCc
Confidence 0000011 1111111111111 111445778888877654 5677888888888999999999999
Q ss_pred CCceeeeccccc------------ccCceEec---CCeEEEEecCCCCCC
Q 011417 407 LGNLVVRSHEVK------------DEGYEIEH---DGKLITVFSAPNYCD 441 (486)
Q Consensus 407 ~~~~iir~H~~~------------~~G~~~~~---~~~~~tifsa~~y~~ 441 (486)
+ .-+++.|.-+ ..+|...+ .+.+++||+.+.++.
T Consensus 251 f-v~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 251 F-VDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred e-eeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 9 8888888733 23333332 235899999998773
No 205
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=3.7e-05 Score=68.01 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
+-.-|.-++..|+|++|..-|..||++-|.. ...|.+.|.+..+++.++.|+..+.+|++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445778899999999999999999998875 34788999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 126 EKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 126 ~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
|..+.. +++|+.-+. +.++.+|..
T Consensus 178 yek~ek--~eealeDyK------------ki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEK--YEEALEDYK------------KILESDPSR 201 (271)
T ss_pred HHhhhh--HHHHHHHHH------------HHHHhCcch
Confidence 977754 888888877 888888864
No 206
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.12 E-value=1.5e-05 Score=75.55 Aligned_cols=209 Identities=14% Similarity=0.257 Sum_probs=104.5
Q ss_pred ceEEEccCCCCh------HHHHHHHHHcCCCCCCCCeEEcccccCC-------CCChHHHHHHHHhchhcCCCeEEEecc
Q 011417 223 HFTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDR-------GSFSVEVILTLFAFKCMCPSAIYLSRG 289 (486)
Q Consensus 223 ~~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGd~vdr-------G~~~~e~l~~l~~lk~~~p~~v~~lrG 289 (486)
++++++|+|... ..+.+.++... ...+.++++||++|. .+...+++.+|..++. .+..|++++|
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~--~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v~~v~G 78 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEA--RQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPCYFMHG 78 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhh--ccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 488999999542 23444444321 234579999999985 2334567777766653 2357999999
Q ss_pred CCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccc--ee-CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCC
Q 011417 290 NHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH--VL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEG 366 (486)
Q Consensus 290 NHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~--~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~ 366 (486)
|||..... .+.+... ...+|-.. .+ +.+++++||-....+...-...+++-|. +
T Consensus 79 NHD~~~~~---------------~~~~~~g--~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~------~ 135 (241)
T PRK05340 79 NRDFLLGK---------------RFAKAAG--MTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN------P 135 (241)
T ss_pred CCchhhhH---------------HHHHhCC--CEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC------H
Confidence 99963211 0000000 12233222 23 4579999997621110000111111110 0
Q ss_pred cccccccCCCCCC-C----CC------CCCCCCCc-eEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEe
Q 011417 367 LMCELLWSDPQPL-P----GR------GPSKRGVG-LSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVF 434 (486)
Q Consensus 367 ~~~~llw~dp~~~-~----~~------~~~~rg~~-~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tif 434 (486)
.+.-++=.-|-.. . .. ....+... ....++.+.+.++..+. +.+|-||.-.+.-.....++.-++-.
T Consensus 136 ~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~GH~H~~~~~~~~~~~~~~~~~ 214 (241)
T PRK05340 136 WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGV-DTLIHGHTHRPAIHQLQAGGQPATRI 214 (241)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCC-CEEEECcccCcceeeccCCCcceEEE
Confidence 1111110111100 0 00 00111111 24456788899999999 99999999754333332333223444
Q ss_pred cCCCCCCCCCCeEEEEEEecCCCceeEEEE
Q 011417 435 SAPNYCDQMGNKGAFIRFEAPTLKPNIVTF 464 (486)
Q Consensus 435 sa~~y~~~~~n~~a~~~~~~~~~~~~~~~~ 464 (486)
+-++. ...+.++.+.++ .+++++|
T Consensus 215 ~lgdw----~~~~~~~~~~~~--~~~~~~~ 238 (241)
T PRK05340 215 VLGDW----HEQGSVLKVDAD--GVELIPF 238 (241)
T ss_pred EeCCC----CCCCeEEEEECC--ceEEEeC
Confidence 44444 234788888433 3445554
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.10 E-value=4.6e-06 Score=79.29 Aligned_cols=98 Identities=24% Similarity=0.231 Sum_probs=87.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.-..|.-|+++|+|++|+.+|.+++..+|.++..+.+.|.+|+++.++..|...++.|+.++.....++...+.+...++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35578899999999999999999999999999999999999999999999999999999999888888888888887777
Q ss_pred hHHHHHhhcCcccccccccccccccccccCCc
Q 011417 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
. ..+|-.-++ .+++++|.
T Consensus 180 ~--~~EAKkD~E------------~vL~LEP~ 197 (536)
T KOG4648|consen 180 N--NMEAKKDCE------------TVLALEPK 197 (536)
T ss_pred h--HHHHHHhHH------------HHHhhCcc
Confidence 6 466666666 78888876
No 208
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.08 E-value=1.2e-06 Score=83.43 Aligned_cols=103 Identities=39% Similarity=0.539 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
+.+......|...+..|.++.|++.|..||+++|..+..|..+|.++..+++...|+..|..|++++|+....|-..|.+
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 44555667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
...+|++++|..++..|.+++-+
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999998643
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.04 E-value=1.3e-05 Score=54.06 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
+++.+|.+|..+|++++|++.|+++++.+|++++++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555554443
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=2.1e-05 Score=76.43 Aligned_cols=126 Identities=25% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C----C
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--Q----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--R----Y 81 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----~ 81 (486)
++.+..-|+.|-..++|++|.++|.++.+..- . -+.++...+.+|.+. ++++|+.++++|+++.- + -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34444455555566666666666666655431 1 134455555555444 66666666666665421 1 1
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 PKGYYRRGAAYLAM-GKFKEALKDFQQVKKLSP--ND----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.++..+|.+|... |++++|+++|++|+++-. +. ......++.++..++ +|++|+..++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--~y~~A~~~~e 179 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--RYEEAIEIYE 179 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--CHHHHHHHHH
Confidence 34566666666666 666666666666666522 11 123445555554444 3666666655
No 211
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.03 E-value=3.5e-05 Score=74.80 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
+.+.....-.++.+.++++.|.+.++..-+.+.+...+....|.+....| ++.+|...|+...+..+.++..+..+|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34555666778889999999999999988877775555555555555555 5999999999988877889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
++..+|+|++|.+.+++|+..+|++++++.++..+...+|+
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999888877665
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=5.4e-06 Score=52.37 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 71 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.02 E-value=3.4e-05 Score=63.49 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP----DAAQKVKEC 125 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~ 125 (486)
.+-.-|.++...|+.+.|++.|.+++.+-|..+.+|.+.+.++.-+|+.++|+..+++|+++..... .++...+.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445688888999999999999999999999999999999999999999999999999999976543 457778888
Q ss_pred HHHHhhHHHHHhhcCcc
Q 011417 126 EKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 126 ~~~l~~~~~~~A~~~~~ 142 (486)
++.+++ .++|..-|+
T Consensus 125 yRl~g~--dd~AR~DFe 139 (175)
T KOG4555|consen 125 YRLLGN--DDAARADFE 139 (175)
T ss_pred HHHhCc--hHHHHHhHH
Confidence 887777 577777776
No 214
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.02 E-value=1.2e-05 Score=54.14 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
++..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555555555555555555555555555555555555554
No 215
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.00 E-value=6.2e-06 Score=52.11 Aligned_cols=34 Identities=41% Similarity=0.463 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 011417 36 LYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ 69 (486)
Q Consensus 36 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 69 (486)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 216
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.00 E-value=0.0001 Score=66.64 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=44.4
Q ss_pred eEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-HHHHHHHHhchhcCCCeEEEeccCCccccc
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-VEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~-~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (486)
+.+++|+||++..+.. .... ....+.+++.||++++|... .+.+..|.. .+..++.++||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~-~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILK-AEEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhh-ccCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHHH
Confidence 4688999999988876 2111 12345699999999999763 333333322 24568999999997543
No 217
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.00 E-value=0.00027 Score=62.67 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=101.5
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccC
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (486)
+++.+++|.|+...+..+..+... ....+.++.+||++..+.. ..+..- ...+++.++||.|.....
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~-~~~~d~vih~GD~~~~~~~--~~l~~~------~~~~i~~V~GN~D~~~~~---- 68 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFN-LEKVDAVIHAGDSTSPFTL--DALEGG------LAAKLIAVRGNCDGEVDQ---- 68 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhh-hcCCCEEEECCCcCCccch--HHhhcc------cccceEEEEccCCCcccc----
Confidence 358999999999975444444433 2345679999999975432 111110 246889999999864322
Q ss_pred ChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCC
Q 011417 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 378 (486)
Q Consensus 302 ~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 378 (486)
..+|-..++ +-+++++||..-.+
T Consensus 69 ---------------------~~~p~~~~~~~~g~ki~l~HGh~~~~--------------------------------- 94 (172)
T COG0622 69 ---------------------EELPEELVLEVGGVKIFLTHGHLYFV--------------------------------- 94 (172)
T ss_pred ---------------------ccCChhHeEEECCEEEEEECCCcccc---------------------------------
Confidence 234444443 36899999965110
Q ss_pred CCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEe--cCCCCCCCCCCeEEEEEEecCC
Q 011417 379 LPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVF--SAPNYCDQMGNKGAFIRFEAPT 456 (486)
Q Consensus 379 ~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tif--sa~~y~~~~~n~~a~~~~~~~~ 456 (486)
......+..+-+..++ +.+|.||+-. ..++.. ++ ++-|- |.+.+- +++..++++++.++
T Consensus 95 -------------~~~~~~l~~la~~~~~-Dvli~GHTH~-p~~~~~-~~-i~~vNPGS~s~pr--~~~~~sy~il~~~~ 155 (172)
T COG0622 95 -------------KTDLSLLEYLAKELGA-DVLIFGHTHK-PVAEKV-GG-ILLVNPGSVSGPR--GGNPASYAILDVDN 155 (172)
T ss_pred -------------ccCHHHHHHHHHhcCC-CEEEECCCCc-ccEEEE-CC-EEEEcCCCcCCCC--CCCCcEEEEEEcCC
Confidence 1234578888889999 9999999975 444333 33 32232 445443 34666788886677
Q ss_pred CceeEEEEecc
Q 011417 457 LKPNIVTFAAV 467 (486)
Q Consensus 457 ~~~~~~~~~~~ 467 (486)
.+++...++..
T Consensus 156 ~~~~~~~~~~~ 166 (172)
T COG0622 156 LEVEVLFLERD 166 (172)
T ss_pred CEEEEEEeecc
Confidence 88877777553
No 218
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.00 E-value=7.2e-05 Score=63.47 Aligned_cols=107 Identities=18% Similarity=0.157 Sum_probs=71.8
Q ss_pred EEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChh
Q 011417 225 TVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEG 304 (486)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~ 304 (486)
.+++|.||....+.++... . ...+.++++||+. .+++..+..++ +..++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~-~--~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D------------ 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVR-L--EGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD------------ 56 (129)
T ss_pred CeeccccCccccchHHHhh-C--CCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc------------
Confidence 3789999997777666554 2 2345799999974 34555555441 234889999999
Q ss_pred hhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCC
Q 011417 305 EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGP 384 (486)
Q Consensus 305 e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~ 384 (486)
-+++++|+-+ .+ ... ..+
T Consensus 57 ----------------------------~~Ilv~H~pp-~~-~~~------------------~~~-------------- 74 (129)
T cd07403 57 ----------------------------VDILLTHAPP-AG-IGD------------------GED-------------- 74 (129)
T ss_pred ----------------------------cCEEEECCCC-Cc-CcC------------------ccc--------------
Confidence 3799999732 11 000 000
Q ss_pred CCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCce
Q 011417 385 SKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYE 423 (486)
Q Consensus 385 ~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~ 423 (486)
...-|.+.+.++++..+. ++++-||.-....+.
T Consensus 75 -----~~~~g~~~l~~~l~~~~~-~~vl~GH~H~~~~~~ 107 (129)
T cd07403 75 -----FAHRGFEAFLDFIDRFRP-KLFIHGHTHLNYGYQ 107 (129)
T ss_pred -----ccccCHHHHHHHHHHHCC-cEEEEcCcCCCcCcc
Confidence 011356788899999999 999999998766665
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=6.2e-05 Score=70.39 Aligned_cols=100 Identities=29% Similarity=0.333 Sum_probs=88.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKVKE 124 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 124 (486)
.++.|.-++..|+|.+|.+.|..-++..|++ +.++|.||.+++.+|+|++|...|..+.+-.|++ |++++.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999985 6899999999999999999999999999998866 588999999
Q ss_pred HHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 125 ~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+...+++ -++|...++ ++++..|+-.
T Consensus 224 ~~~~l~~--~d~A~atl~------------qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGN--TDEACATLQ------------QVIKRYPGTD 249 (262)
T ss_pred HHHHhcC--HHHHHHHHH------------HHHHHCCCCH
Confidence 9988887 588888888 6666666543
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.94 E-value=6.3e-05 Score=65.88 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred CcHHHHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-----------HHHH
Q 011417 9 SSVSRAEELKALANEAFRAK----------KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-----------YGSA 67 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~A 67 (486)
.+|.+++.+++-|.++.... -+++|+.-|++||.++|+...+++++|.+|..++. |++|
T Consensus 20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46788899999998887653 46788999999999999999999999999988664 7789
Q ss_pred HHHHHHHHHhCCCCHHHHH
Q 011417 68 IQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 68 ~~~~~~al~~~p~~~~~~~ 86 (486)
..+|++|...+|++.....
T Consensus 100 ~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHhcCCCcHHHHH
Confidence 9999999999999855433
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.90 E-value=5.5e-05 Score=67.81 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=69.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (486)
.-.|+.+.++..+|.-+...|+|+.|.+.|+..++++|.+.-+..|+|..++-.|+|.-|.+.+.+--+.||+++
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 346778899999999999999999999999999999999999999999999999999999999999888888776
No 222
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.89 E-value=5.5e-05 Score=71.13 Aligned_cols=199 Identities=13% Similarity=0.178 Sum_probs=96.6
Q ss_pred EEEccCCCCh------HHHHHHHHHcCCCCCCCCeEEcccccCCC-----CC--hHHHHHHHHhchhcCCCeEEEeccCC
Q 011417 225 TVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRG-----SF--SVEVILTLFAFKCMCPSAIYLSRGNH 291 (486)
Q Consensus 225 ~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG-----~~--~~e~l~~l~~lk~~~p~~v~~lrGNH 291 (486)
++++|+|... ..+.+.+..... ..+.++++||++|.. +. ..++...|..|+. .+..|++++|||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~--~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~-~~~~v~~v~GNH 78 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR--KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSD-QGVPCYFMHGNR 78 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc--cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence 5789999543 234444443211 345799999999952 11 1345555555543 246899999999
Q ss_pred cccccccccCChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccC--------C
Q 011417 292 ESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRF--------C 360 (486)
Q Consensus 292 E~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~--------~ 360 (486)
|...-. .+.+.. . +..+|-..++ +.+++++||-....+...-.-.+++-|. .
T Consensus 79 D~~~~~---------------~~~~~~-g-i~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~ 141 (231)
T TIGR01854 79 DFLIGK---------------RFAREA-G-MTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLH 141 (231)
T ss_pred chhhhH---------------HHHHHC-C-CEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHh
Confidence 963110 011100 0 1122222222 5689999996521110000001111110 0
Q ss_pred CCCC-CCcccccccCCCCCCCCCCCCCCC-CceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCC
Q 011417 361 EPPE-EGLMCELLWSDPQPLPGRGPSKRG-VGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPN 438 (486)
Q Consensus 361 ~~~~-~~~~~~llw~dp~~~~~~~~~~rg-~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~ 438 (486)
-++. ..-+...+|+.+.... ..+. .-....++.+.+.++..+. +++|-||+-...-+.+..++.-.+-++-++
T Consensus 142 l~~~~r~~l~~~~~~~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~GHtH~~~~~~~~~~~~~~~~~~lgd 216 (231)
T TIGR01854 142 LPLAVRVKLARKIRAESRADK----QMKSQDIMDVNPAEVAAVMRRYGV-DRLIHGHTHRPAIHPLQADGQPATRIVLGD 216 (231)
T ss_pred CCHHHHHHHHHHHHHHHHHhc----CCCcchhhCCCHHHHHHHHHHcCC-CEEEECCccCcceeecccCCCccEEEEECC
Confidence 0000 0011122222111000 0000 1123467788999999999 999999996543333333333345566665
Q ss_pred CCCCCCCeEEEEEE
Q 011417 439 YCDQMGNKGAFIRF 452 (486)
Q Consensus 439 y~~~~~n~~a~~~~ 452 (486)
.. ..+.++.+
T Consensus 217 W~----~~~~~~~~ 226 (231)
T TIGR01854 217 WY----RQGSILRV 226 (231)
T ss_pred Cc----cCCeEEEE
Confidence 52 23666776
No 223
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.85 E-value=2.9e-05 Score=48.96 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.83 E-value=2.1e-05 Score=76.54 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC--C
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPR--Y 81 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~ 81 (486)
-.++-++|++|+-.|+|++|+..-+.-+++... .-.++.++|.|+.-+|+++.|+++|++++.+ ... .
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 445668899999999999999998888877543 2578999999999999999999999998754 223 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP------NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+...|.||.+|.-+.+++.|+.++++-+.+.. ....+.+.|+.++..++. -++|+.+.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~--h~kAl~fae 339 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE--HRKALYFAE 339 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 45578899999999999999999999887743 234577888888888887 477777666
No 225
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.82 E-value=0.00041 Score=76.28 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAY 92 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 92 (486)
..++..+...|.+.|++++|.+.|++. .+.+..+|..+...|.+.|++++|++.|++..+.. ..+..++..+..++
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344556666777777777777777653 34456667777777777777777777777665532 22445666666677
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 93 LAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+.|++++|.+.+..+++.. +.+...+..+...|.+.|+ .++|...++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--~~~A~~vf~ 384 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR--MEDARNVFD 384 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC--HHHHHHHHH
Confidence 77777777777777666654 3444555555566544443 566666655
No 226
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.81 E-value=3.6e-05 Score=48.52 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (486)
.+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 227
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.00016 Score=70.30 Aligned_cols=106 Identities=25% Similarity=0.233 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011417 11 VSRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQ--N----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (486)
..-+..+..+|..|... |++++|+++|++|+++... . ...+..+|.++.++|+|++|+..|+++....-++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l 190 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL 190 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 34467788999999988 9999999999999987422 1 4567889999999999999999999998753221
Q ss_pred ----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 82 ----P-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 82 ----~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
. ..++..+.|+...|++..|.+.+++....+|...
T Consensus 191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 2 3456778899999999999999999999998653
No 228
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.77 E-value=6.7e-05 Score=47.16 Aligned_cols=33 Identities=33% Similarity=0.780 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (486)
.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455555666666666666666666666655553
No 229
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0009 Score=60.86 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC----
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPR---- 80 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~---- 80 (486)
.++..-+..|.-.++..+.++|+.++++++++..+- +..+..+|.+|... .++++|+.+|++|-+....
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 334444555555566668888888888888876543 33455677777654 7788888888887664322
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
-..++..-|..-..+++|.+|+..|++..+..-+++-
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 2345556666667778888888888888776666543
No 230
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.76 E-value=0.0023 Score=59.36 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=96.7
Q ss_pred ceEEEccCCCChH----HH----HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhc--CCCeEEEeccCCc
Q 011417 223 HFTVCGDVHGQFY----DL----LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM--CPSAIYLSRGNHE 292 (486)
Q Consensus 223 ~~~v~GDihG~~~----~l----~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~--~p~~v~~lrGNHE 292 (486)
++.+++|+|-... .+ ..+.+... ....+.++++||++|.|....+--.+.-.++.. .+--++.++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~-~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAE-ALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHH-HcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 3788999985332 22 22233221 112356899999999998443222222222221 2345788999999
Q ss_pred ccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccc
Q 011417 293 SKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL 372 (486)
Q Consensus 293 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~ll 372 (486)
.. +...+. ...+-++-+.+.++.-|- ..-++++|-=+ .+... .....-
T Consensus 81 ~~-~~ld~~--------~~~~ql~WL~~~L~~~~~----~~~iv~~H~p~-~~~~~------------------~~~~~~ 128 (214)
T cd07399 81 LV-LALEFG--------PRDEVLQWANEVLKKHPD----RPAILTTHAYL-NCDDS------------------RPDSID 128 (214)
T ss_pred ch-hhCCCC--------CCHHHHHHHHHHHHHCCC----CCEEEEecccc-cCCCC------------------cCcccc
Confidence 42 111111 112223333344443221 23578888533 11000 000011
Q ss_pred cCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHC-CCCceeeecccccccCceEec-----CCeEEEEecCCCCCCCCCCe
Q 011417 373 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLGNLVVRSHEVKDEGYEIEH-----DGKLITVFSAPNYCDQMGNK 446 (486)
Q Consensus 373 w~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~-~~~~~iir~H~~~~~G~~~~~-----~~~~~tifsa~~y~~~~~n~ 446 (486)
|.. ...-+.+.+.+.++++ ++ ++++-||.-. .+..... ++.|..+.+....... +..
T Consensus 129 ~~~--------------~~~~~~~~~~~ll~~~~~V-~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~-~g~ 191 (214)
T cd07399 129 YDS--------------DVNDGQQIWDKLVKKNDNV-FMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPN-GGN 191 (214)
T ss_pred ccc--------------ccccHHHHHHHHHhCCCCE-EEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCC-CCc
Confidence 110 1123456788889998 78 9999999753 3444331 3446666554433222 222
Q ss_pred E--EEEEEecCCCceeEEEEec
Q 011417 447 G--AFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 447 ~--a~~~~~~~~~~~~~~~~~~ 466 (486)
| .++.|...+.++.+.+|.+
T Consensus 192 ~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 192 GFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred ceEEEEEEecCCCEEEEEeCCC
Confidence 3 3455634445777777743
No 231
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.76 E-value=0.00012 Score=71.02 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=84.0
Q ss_pred HHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 18 KALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 18 ~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
...|.+.+..| ++++|...|++..+..+.++..+..+|.+++.+|+|++|...++++++.+|.++.++.+++.+...+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 33344444555 6999999999988888889999999999999999999999999999999999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHhCCCCHHHH
Q 011417 96 GKF-KEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 96 g~~-~~A~~~~~~al~~~p~~~~~~ 119 (486)
|+. +.+.++.++....+|+++-..
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred CCChhHHHHHHHHHHHhCCCChHHH
Confidence 998 667778888888999987543
No 232
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=97.76 E-value=0.00031 Score=72.64 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHCCCCc----eeeecccccc--cCceE-ecCCeEEEEe---cCCCCCCCCCCeEEEEEE
Q 011417 394 GADVTKRFLQDNSLGN----LVVRSHEVKD--EGYEI-EHDGKLITVF---SAPNYCDQMGNKGAFIRF 452 (486)
Q Consensus 394 g~~~~~~~l~~~~~~~----~iir~H~~~~--~G~~~-~~~~~~~tif---sa~~y~~~~~n~~a~~~~ 452 (486)
.++..++.|+..|+ + .||-||.+|. +|=.. -.+||++.|- |.. |...+| -|++-+|
T Consensus 507 ~e~~c~~IL~EFgl-~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TG-IAGYTLi 572 (640)
T PF06874_consen 507 DEEICDKILEEFGL-DPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTG-IAGYTLI 572 (640)
T ss_pred CHHHHHHHHHHhCC-CCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccC-ccceEEE
Confidence 47889999999999 8 9999999986 55543 3589999995 555 655433 3455555
No 233
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00031 Score=65.99 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=108.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE------------ 76 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------------ 76 (486)
.+|.+-..+..+|.+|+...+|..|..+|++.-.+.|......+..|..+++.+.+..|+........
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34555567889999999999999999999999999999888888888888888888888776544321
Q ss_pred ------------------hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Q 011417 77 ------------------IDP--RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136 (486)
Q Consensus 77 ------------------~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~ 136 (486)
.-| +.+....+.|-+.++.|+|+.|++-|+.|++...-++-.-++++.++...++ +..
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~q--yas 196 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ--YAS 196 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh--HHH
Confidence 113 4567788899999999999999999999999999999999999999866555 778
Q ss_pred hhcCcc
Q 011417 137 AIAVPE 142 (486)
Q Consensus 137 A~~~~~ 142 (486)
|+.+..
T Consensus 197 ALk~iS 202 (459)
T KOG4340|consen 197 ALKHIS 202 (459)
T ss_pred HHHHHH
Confidence 877654
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.72 E-value=0.00048 Score=58.48 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 011417 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD---AAQ 120 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (486)
.+..++.-|...++.|+|++|++.|+......|-. ..+...+|.+|+..+++++|+..+++-++++|+++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46778899999999999999999999999988764 578999999999999999999999999999999875 466
Q ss_pred HHHHHHHHHh
Q 011417 121 KVKECEKAVK 130 (486)
Q Consensus 121 ~l~~~~~~l~ 130 (486)
..|.++....
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 6666654443
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.69 E-value=0.00014 Score=69.90 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD----- 117 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 117 (486)
.+++.+++..+.+..++.+++.+.+..+.+.... ..+...+|.++..++.+++++++|++|+++..++.+
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 5678888888888889999998888888764332 356778999999999999999999999998665543
Q ss_pred -HHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHH
Q 011417 118 -AAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYA 196 (486)
Q Consensus 118 -~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~ 196 (486)
+...++..+..+++ +++|+.+.. ++.++...+....+...+ .--.+-.+...++..+.+ .++
T Consensus 163 qvcv~Lgslf~~l~D--~~Kal~f~~------------kA~~lv~s~~l~d~~~ky-r~~~lyhmaValR~~G~L--gdA 225 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKD--YEKALFFPC------------KAAELVNSYGLKDWSLKY-RAMSLYHMAVALRLLGRL--GDA 225 (518)
T ss_pred ehhhhHHHHHHHHHh--hhHHhhhhH------------hHHHHHHhcCcCchhHHH-HHHHHHHHHHHHHHhccc--ccH
Confidence 46677788877776 788888877 666665555543333221 011122223333333333 357
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHc
Q 011417 197 FQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELN 244 (486)
Q Consensus 197 ~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~ 244 (486)
.+.|+++.++--...+-.-.. ..+.++||||-+..|+.+.|...
T Consensus 226 ~e~C~Ea~klal~~Gdra~~a----rc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQA----RCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHH----HHHHHHHHHHHhcccHhHHHHHH
Confidence 888999888776665432211 13788899999999998888753
No 236
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.69 E-value=0.0001 Score=46.30 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (486)
.+|+.+|.+++.+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 237
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00013 Score=69.97 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=98.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 100 (486)
..+....+|..|+..++-.+..+.... ..-.-+|.|++++|+|++|+..|+.+.+.+..+++.+.+||.|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456788999999999998886655433 5556689999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----------------HHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 101 ALKDFQQVKKLSPNDPDAAQKVKECEKAVKK----------------LKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 101 A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~----------------~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
|.....+| |+++--...+..+-..++. ....-|-..+.+..+++|+..+.+.+.-+|.+.
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 98776654 4443221111111111111 112222223344556666666768888888876
Q ss_pred CC
Q 011417 165 GA 166 (486)
Q Consensus 165 ~~ 166 (486)
+-
T Consensus 186 al 187 (557)
T KOG3785|consen 186 AL 187 (557)
T ss_pred hh
Confidence 65
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.0016 Score=56.31 Aligned_cols=99 Identities=26% Similarity=0.268 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHccCHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----------------------NAVYYANRAFAHTKLEEYGSAIQD 70 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~g~~~~A~~~ 70 (486)
.-..+...|......++.+.++..+++++.+... ...+...++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3445566677778889999999999999986421 123455577788899999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 71 ASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 71 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
+++++..+|-+..+|..+-.+|...|+..+|++.|+++.+.
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988654
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.67 E-value=0.0011 Score=59.94 Aligned_cols=131 Identities=29% Similarity=0.368 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDP---RYPKGY 85 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~ 85 (486)
.+.....+...+..+...+++..|+..+.+++...+.........+. ++...|++++|...+++++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34556677788888888888888888888888877776555666666 78888888888888888888776 356666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+...+++++|+..+.+++...+. .......++..+...+. +++|...+.
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~ 226 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK--YEEALEYYE 226 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc--HHHHHHHHH
Confidence 77777778888888888888888888888 57777777777755542 455555555
No 240
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.66 E-value=0.001 Score=73.14 Aligned_cols=124 Identities=12% Similarity=0.046 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAA 91 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 91 (486)
..+|..+...|.+.|++++|++.|++..+.. ..+...|..+..++.+.|++++|.+.++.+++.. +.+..++..+..+
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 3445555566666666666666665554422 1124455555556666666666666666655554 3344555555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.+.|++++|.+.|++..+ .+...|..+...+...|+ .++|+..++
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~--~~~A~~lf~ 415 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR--GTKAVEMFE 415 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC--HHHHHHHHH
Confidence 6666666666666655432 233445555555533333 455555555
No 241
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00068 Score=62.68 Aligned_cols=136 Identities=16% Similarity=0.226 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----D--PRYPKGYY 86 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~ 86 (486)
....+.+++++...|+|.-.+..+.+.++.+ |.++.....||.+.++-|+.+.|..+|+++-+. + ....-+..
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3456778888899999999999999999998 667888899999999999999999999965432 2 23456778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+.+.+|.-..++.+|...|.+++..||.++.+..+.+.|+..+++ ...|+...+ .+.+..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~--l~DAiK~~e------------~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK--LKDALKQLE------------AMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH--HHHHHHHHH------------HHhccCCcc
Confidence 888999999999999999999999999999999999999988777 677887777 666666643
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00064 Score=69.42 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
..++.--+.+...++|++|+....+.+...|++..+....-.++.+.++|++|+...++-......+.. .+..|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHH
Confidence 456666677778888888888888888888888888777777777777777777444433222222211 1566667777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++.++|+..++ -.++.+..+....+++...+++ |++|+..|.
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--ydealdiY~ 134 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--YDEALDIYQ 134 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 777777777666 3345555555555666555555 666666554
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.58 E-value=0.001 Score=58.43 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=98.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCH
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-IDPRYPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~ 98 (486)
.+....+.=|.+.++....+.++..|. ..-.+.||..+..+|++.||...|++++. +..+++..+..++.+....+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 444555666788888888888888887 55678899999999999999999999986 5678899999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 99 KEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..|...+++..+.+|. .|+....++..+...++ +..|...++
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~--~a~Aesafe 184 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK--YADAESAFE 184 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC--chhHHHHHH
Confidence 9999999999999984 56777788888876665 555555555
No 244
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.58 E-value=0.0013 Score=56.72 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHCCCCceeeecccccccCce
Q 011417 394 GADVTKRFLQDNSLGNLVVRSHEVKDEGYE 423 (486)
Q Consensus 394 g~~~~~~~l~~~~~~~~iir~H~~~~~G~~ 423 (486)
+.+.+.+++++.+. ++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~-~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGV-DLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCC-CEEEECCCCCcCeee
Confidence 56789999999999 999999997654443
No 245
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00064 Score=69.41 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=94.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 78 (486)
+..|.++|+.+..++|+..++ -.++.+..+....|.+++++++|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 4577777889999999999999999999999975432
Q ss_pred -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH-------HHHHHHHHHHHHHhh
Q 011417 79 -----------PR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--------PNDP-------DAAQKVKECEKAVKK 131 (486)
Q Consensus 79 -----------p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~-------~~~~~l~~~~~~l~~ 131 (486)
|+ +.+.+|+.|-++...|+|.+|++.+++|+++. .+.. .....++.+++.+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 45678999999999999999999999995542 1111 245667777777776
Q ss_pred HHHHHhhcCcc
Q 011417 132 LKFEEAIAVPE 142 (486)
Q Consensus 132 ~~~~~A~~~~~ 142 (486)
-++|...+.
T Consensus 240 --t~ea~~iy~ 248 (652)
T KOG2376|consen 240 --TAEASSIYV 248 (652)
T ss_pred --hHHHHHHHH
Confidence 466666554
No 246
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.57 E-value=0.0031 Score=71.69 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYY 86 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 86 (486)
+...|..+...|.+.|++++|++.|++..+. .|+ ...|..+...|.+.|++++|.+.+++.... .| +...|.
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 3567778888888888888888888887654 344 677788888888888888888888887653 33 356777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+-.+|.+.|++++|.+.|+++.+.+ +.+...+..+...+...++ +++|...++
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~--~deAl~lf~ 638 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD--WDFALSIYD 638 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 77778888888888888888887765 3455667677666655544 677777665
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00012 Score=66.59 Aligned_cols=88 Identities=24% Similarity=0.263 Sum_probs=79.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 53 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
.-|..++...+|..|+.+|.+||.++|..+..|.+.+.||.++.+++.+....++|++++|+..-+++.++.+....+.
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~- 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG- 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-
Confidence 3466777788999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred HHHHhhcCcc
Q 011417 133 KFEEAIAVPE 142 (486)
Q Consensus 133 ~~~~A~~~~~ 142 (486)
|.+|+..+.
T Consensus 94 -~~eaI~~Lq 102 (284)
T KOG4642|consen 94 -YDEAIKVLQ 102 (284)
T ss_pred -ccHHHHHHH
Confidence 777777665
No 248
>PLN03077 Protein ECB2; Provisional
Probab=97.49 E-value=0.0023 Score=72.14 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=83.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGK 97 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~ 97 (486)
+-..|.+.|+.++|...|++. +.+...|..+...|.+.|+.++|++.|++..+. .|+ ..++..+-.++...|+
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 446777888888888888775 556788888888888888888888888887764 343 4455556667888888
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 98 FKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 98 ~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++|.+.|++..+..+-. ...+..+..++...|+ .++|..+++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--~~eA~~~~~ 649 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--LTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 888888888887544332 3455666666655444 677777766
No 249
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.46 E-value=0.0036 Score=61.26 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAA 91 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 91 (486)
.+......|..-+..|+|.+|.....++-+..+.-..++..-+.+..++|+++.|-.+..++-+..++ .-.+...++..
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarl 162 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARL 162 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45556677888888999999999999988888887788888888999999999999999999998554 45567778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
....|+++.|.....++++..|.++++......+|...|. +.....+..
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~--~~~ll~~l~ 211 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA--WQALLAILP 211 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999999999999999999999999999999977776 566655544
No 250
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.43 E-value=0.0082 Score=57.54 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCceeeecccccccCc
Q 011417 395 ADVTKRFLQDNSLGNLVVRSHEVKDEGY 422 (486)
Q Consensus 395 ~~~~~~~l~~~~~~~~iir~H~~~~~G~ 422 (486)
.+.+.+.+++.++ ++++-||.-.....
T Consensus 195 ~~~l~~ll~~~~V-~~v~~GH~H~~~~~ 221 (262)
T cd07395 195 RKPLLDKFKKAGV-KAVFSGHYHRNAGG 221 (262)
T ss_pred HHHHHHHHHhcCc-eEEEECccccCCce
Confidence 4567788899999 99999999876553
No 251
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.43 E-value=0.0037 Score=57.28 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=41.9
Q ss_pred ceEEEccCCCChH-----------HHHHHHHHcCCCCCCCCeEEcccccCCCCCh---HHHHHHHHhchhcCCCeEEEec
Q 011417 223 HFTVCGDVHGQFY-----------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS---VEVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 223 ~~~v~GDihG~~~-----------~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~---~e~l~~l~~lk~~~p~~v~~lr 288 (486)
++.+++|+|-... ...+.+...-.....+.+|++||+++.+... .+.+..++......+-.++++.
T Consensus 4 ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 83 (199)
T cd07383 4 KILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATF 83 (199)
T ss_pred EEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 5888899994221 1122222211112345699999999977653 4555555443333345788999
Q ss_pred cCCc
Q 011417 289 GNHE 292 (486)
Q Consensus 289 GNHE 292 (486)
||||
T Consensus 84 GNHD 87 (199)
T cd07383 84 GNHD 87 (199)
T ss_pred ccCC
Confidence 9999
No 252
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.42 E-value=0.0033 Score=71.42 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYL 93 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 93 (486)
.+..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+..|++..+.. ..+...|..+..+|.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33444444444444444444444444433 2234444444444444444444444444444331 112334444444444
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.|++++|.+.++++.+.. +.+...+..+..++...++ .++|...++
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~--~eeA~~lf~ 708 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN--WKKALELYE 708 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHH
Confidence 5555555555554444432 1223334444444433332 444444443
No 253
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.0023 Score=68.36 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=88.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
.....+++.+|+....+.++..|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 34567888889999999999999988888888889999999999998887777777788888888888999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
..|+++...+|+ .+....+-.++...+.
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 999999998888 6666666665544443
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.40 E-value=0.0067 Score=49.31 Aligned_cols=94 Identities=22% Similarity=0.327 Sum_probs=73.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ------------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-------ID 78 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~ 78 (486)
...|...+..|-|++|...+++|.+..-. ++..+..|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34455667789999999999999987422 356677899999999999999999999985 34
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 79 PRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 79 p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
.+. ..+.++.|.++..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 443 346688999999999999999999998765
No 255
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.36 E-value=0.0056 Score=55.26 Aligned_cols=118 Identities=25% Similarity=0.435 Sum_probs=99.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 98 (486)
.+...++++.|...|.+++...| .....+..++..+...+++++|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 89999999999999999999877 46777788888888999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++|+..+.+++...|........++..+...+ ..+++.....
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELG--RYEEALEALE 260 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC--CHHHHHHHHH
Confidence 99999999999999986666666666664222 2444544444
No 256
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0011 Score=64.87 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN----SQ--NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP------ 79 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------ 79 (486)
..-.++.++|+++.-.|+++.|+++|++++.+. .. .+...+.||..|.-+.++++|+.+..+-+.+..
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678899999999999999999999987653 22 356688999999999999999999999776532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHhh
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PN-DPDAAQKVKECEKAVKK 131 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~l~~ 131 (486)
....+++.||.++..+|..++|+.+.++.++.. |. ...+..++......+|.
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 246789999999999999999999988888763 22 22345566666555554
No 257
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.34 E-value=0.0047 Score=60.49 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
++......+..+...|++++|.+...++++..-+.. ....+ -....++...=++..++.++..|+++..++.||.++
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLI--PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHH--hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 355667788889999999999999999999765533 22222 234678889999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+.+.|.+|..+|+.|++..|+.. .+..++.++.++++ ..+|-...+
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~--~~~A~~~r~ 385 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGE--PEEAEQVRR 385 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC--hHHHHHHHH
Confidence 999999999999999999988764 46788888877776 344444333
No 258
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.33 E-value=0.0006 Score=65.73 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCceEEEccCCCC----hHHHHHHHHHcCCCCCCCCeEEcccccCCC--CChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 221 GKHFTVCGDVHGQ----FYDLLNIFELNGLPSEENPYLFNGDFVDRG--SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 221 ~~~~~v~GDihG~----~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG--~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
+.++..++|+|.. ...+.++++.... ...+-+++.||++|.+ ....++...|..|+... .|+.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~-~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIE-QKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHh-cCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 4579999999975 4446666654322 1345689999999954 23345556666666433 499999999963
No 259
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0023 Score=59.23 Aligned_cols=118 Identities=16% Similarity=0.250 Sum_probs=98.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (486)
.++.++.....+|...++.||.+.|..+++.+-+.. ...-.+..+.+.+|...++|.+|...+.+.+..||.++
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 346778888999999999999999999999655432 22345667778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECE 126 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~ 126 (486)
.+..+.|.|+..+|+..+|++..+.++...|... ...+++..++
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999643 3444444443
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.28 E-value=0.0011 Score=63.91 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----C---
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----Y--- 81 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~--- 81 (486)
++...+|+++...+.+++++++|++|++..-++ ..++..||..+.++.++++|+-+..+|.++-.. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 456779999999999999999999999875443 356899999999999999999999999887322 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+++.++.++..+|+.-+|.+++++|.++. +-+......++.+|+..++ .+.|+.-|+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd--~e~af~rYe 270 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD--LERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc--HhHHHHHHH
Confidence 3467889999999999999999999998874 2233445677788866665 555655555
No 261
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.001 Score=67.10 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL---EEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
+-|+..+.....|+..+..+.+..|+..|.+++...|.....+.++|.++++. |+.-.|+..+..|++++|...++|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 44667777888888888899999999999999999999999999999999875 577899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
+.|+.++.+++++.+|+.+...+....|.+..
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 99999999999999999998877777776544
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.01 Score=56.21 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH---------------------
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA--------------------- 74 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------------- 74 (486)
.-+..+......|++.+|...++.++...|++..+...++.||...|+.+.|...+...
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999998776666541
Q ss_pred -------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Q 011417 75 -------------IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK 130 (486)
Q Consensus 75 -------------l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~l~ 130 (486)
+..+|++..+-+.+|..+...|++++|.+.+-..++.+- ++..+...+-.+...++
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 123577777777777777777777777777776666654 33445555555554444
No 263
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.00089 Score=66.89 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h----
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQA-IELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIE-I---- 77 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~---- 77 (486)
+.+.++..+++.++..|+|.+|.+.+... +...|. ..-+|.|+|.++++++.|.-+...|.+|++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999887553 222332 244579999999999999999999999995 1
Q ss_pred ----C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 78 ----D---------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 78 ----~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
. ....+..|+.|..|...|+.-.|.++|.++...--.+|..|..++.|.....+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 1 13457899999999999999999999999999999999999999988755444
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00056 Score=42.92 Aligned_cols=31 Identities=35% Similarity=0.775 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
.+|+.+|.+|..+|++++|+++|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555555555555555555555
No 265
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.25 E-value=0.0027 Score=59.91 Aligned_cols=67 Identities=30% Similarity=0.416 Sum_probs=41.7
Q ss_pred eEEEccCCCC------------hHHHHHHHHHcC-CCCCCCCeEEcccccCCCCC-hHH-HHHHHHhchhcCCCeEEEec
Q 011417 224 FTVCGDVHGQ------------FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSF-SVE-VILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 224 ~~v~GDihG~------------~~~l~~~l~~~~-~~~~~~~~~~lGd~vdrG~~-~~e-~l~~l~~lk~~~p~~v~~lr 288 (486)
+.+++|+|=. ...+.++++... ..+..+-++++||+++.|.. ..+ ++..+-.+ +..++.++
T Consensus 2 ~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~----~~p~~~v~ 77 (240)
T cd07402 2 LAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAAL----PIPVYLLP 77 (240)
T ss_pred EEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhc----CCCEEEeC
Confidence 6788899933 234555655432 22345579999999998753 222 22222222 45689999
Q ss_pred cCCccc
Q 011417 289 GNHESK 294 (486)
Q Consensus 289 GNHE~~ 294 (486)
||||..
T Consensus 78 GNHD~~ 83 (240)
T cd07402 78 GNHDDR 83 (240)
T ss_pred CCCCCH
Confidence 999974
No 266
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.24 E-value=0.0036 Score=65.68 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=33.4
Q ss_pred ceeeecccccccCceEecCCeEEEEecCCCCCCC---------CCCeEEEEEEecCCCceeEEEEe
Q 011417 409 NLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQ---------MGNKGAFIRFEAPTLKPNIVTFA 465 (486)
Q Consensus 409 ~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~---------~~n~~a~~~~~~~~~~~~~~~~~ 465 (486)
++++-||+.. .|+....+ +.+.+.+.+... ....|.+.+|.=++++.+.+.|.
T Consensus 442 dv~~~GH~H~-~~~~~~~g---~~~IN~gsf~~~t~fq~~~~~~p~~~~~~lv~l~tl~~~~~~f~ 503 (504)
T PRK04036 442 DIFHTGHVHI-NGYGKYRG---VLLINSGTWQAQTEFQKRVNIVPTPARVPIVDLDTLEVTVLDFD 503 (504)
T ss_pred CEEEeCCCCc-cceEEECC---EEEEECCcccccccccceeccCCCCCEEEEEECCCCcEEEEEec
Confidence 8899999975 67765433 334455555421 12457777774477888888774
No 267
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0019 Score=61.70 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
+.-|-.-|.-|++.++|..|+..|.++|+....+ +..|.++|-|...+|+|..|+..+.+|+.++|.+..+++.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5567777999999999999999999999975543 567899999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhcCcccc
Q 011417 124 ECEKAVKKLKFEEAIAVPESE 144 (486)
Q Consensus 124 ~~~~~l~~~~~~~A~~~~~~~ 144 (486)
.|+..++. +.+|..+.+.+
T Consensus 161 kc~~eLe~--~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELER--FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHH--HHHHHHHHhhh
Confidence 99988887 78888888743
No 268
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0012 Score=60.42 Aligned_cols=102 Identities=17% Similarity=0.149 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPRY----------PKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
..+....|.-++.+|+|.+|...|..|+.. .|.. ...+.+.+.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 466778899999999999999999998742 3433 3468899999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 110 ~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+.+|.+..+++..+.++. +-++..+|.+-+. ++++++|..
T Consensus 258 ~~~~~nvKA~frRakAha--a~Wn~~eA~~D~~------------~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHA--AVWNEAEAKADLQ------------KVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHH--hhcCHHHHHHHHH------------HHHhcChhh
Confidence 999999999998888873 3333444544444 888888864
No 269
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.003 Score=59.51 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
.+.+..+|.+|++++.--.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..|..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011417 103 KDFQQV 108 (486)
Q Consensus 103 ~~~~~a 108 (486)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 876544
No 270
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.20 E-value=0.00074 Score=62.99 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=47.8
Q ss_pred CceEEEccCCCChH----HHHHHHHHcCCCCCCCCeEEcccccCCCCChH-HHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 222 KHFTVCGDVHGQFY----DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-EVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 222 ~~~~v~GDihG~~~----~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~-e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.++.+++|+|.... .+.++++..... ..+.+++.||++|.+.... ++..++..++ .+..++++.||||..
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~ 76 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINAL-KPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYY 76 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhcc-CCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcccc
Confidence 35899999998643 455555543321 2356899999999988765 4444444443 345799999999964
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.19 E-value=0.00068 Score=42.50 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 79 (486)
.+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566666666666666666666666555
No 272
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.17 E-value=0.0048 Score=61.64 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+..|...|....++.+...|...+-.||...|.+ ...-..-..-.++++++.....|++-++..|.+..+|...|.+-.
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 3445555555666666666666666666666663 333334445556677777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|+.+.|...|+-|++...-+..-....+.+-.....+.+++|..+++
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 7777777777777776654444333444444555555555666666665
No 273
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.15 E-value=0.0013 Score=58.62 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccc
Q 011417 249 EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (486)
Q Consensus 249 ~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (486)
..+.++++||++++|..+.. +..+..+ +..+++++||||....
T Consensus 42 ~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 42 PDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred CCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 34679999999999987644 4444333 4569999999997544
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.14 E-value=0.0031 Score=44.02 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
+.+|.+|..++++|+|++|.++.+.+++.+|+|..+......+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998877666665443
No 275
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.09 E-value=0.0038 Score=60.48 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK-LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
+|....+...+.+..+.|...|.+|.+..+-...+|...|...++ .++.+.|...|+++++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777778888889999999999997666678999999999777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHh
Q 011417 95 MGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVK 130 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~ 130 (486)
.++.+.|...|++++..-|... .+|..........|
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999998877665 34555444444444
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.015 Score=51.79 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKGYYRRG 89 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg 89 (486)
..+...+|..+...+++++|+..++.++....+. +.+-.+||.+..++|++++|+..++.... +.. +..-...|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence 4456778889999999999999999998644332 56678899999999999999988876533 222 23345679
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
.++...|+-++|+..|++++..+++.+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999999999999999999999875544
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.07 E-value=0.003 Score=63.76 Aligned_cols=119 Identities=19% Similarity=0.231 Sum_probs=88.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCC-------------
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-------IDP------------- 79 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p------------- 79 (486)
.-....+..+.++-++.-++||+++|+.+.+|..||.-.. ....+|.+.++++++ .+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 3445567889999999999999999999999999886321 223455555555543 211
Q ss_pred -C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 80 -R----YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 80 -~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
. ...+..++|+|..++|+.++|++.++..++..|. +..++.++-.++..++. |.++..+..
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--Yad~q~lL~ 319 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--YADVQALLA 319 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 0 1345678999999999999999999999998875 45678888888865555 777777766
No 278
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.04 E-value=0.0017 Score=58.09 Aligned_cols=45 Identities=20% Similarity=0.126 Sum_probs=28.1
Q ss_pred CCCeEEcccccCCCCCh--HHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~--~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.+.++++||+++....+ .+....-.......+..|++++||||..
T Consensus 42 ~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 42 PERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred CCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 35799999999865433 2222211111223456899999999964
No 279
>PRK10941 hypothetical protein; Provisional
Probab=97.03 E-value=0.0087 Score=57.17 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.....++=.+|.+.++++.|+.+.+..+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+......+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3456778889999999999999999999999999999999999999999999999999999999999998866555544
No 280
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.02 E-value=0.0032 Score=64.36 Aligned_cols=106 Identities=24% Similarity=0.243 Sum_probs=93.5
Q ss_pred HHHHH-HccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 011417 21 ANEAF-RAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 21 g~~~~-~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (486)
|..|. ..|+...|++++..|+...|... ....+||.+..+.|-...|...+.+++.++...+-.++.+|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 33443 46899999999999999999754 45789999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+.|++.|++|++++|+++....-+..+.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999999998876666554
No 281
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.01 E-value=0.0056 Score=54.61 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=28.6
Q ss_pred CCCeEEcccccCCCCChH--H---HHHHHHhchh-c----CCCeEEEeccCCccc
Q 011417 250 ENPYLFNGDFVDRGSFSV--E---VILTLFAFKC-M----CPSAIYLSRGNHESK 294 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~--e---~l~~l~~lk~-~----~p~~v~~lrGNHE~~ 294 (486)
.+.++++||++|.|.... + .+..+..+.. . .+..+++++||||..
T Consensus 46 pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 46 PDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred CCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 456999999999987532 2 2222222211 1 145799999999964
No 282
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.00 E-value=0.0094 Score=63.93 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...|+...+....|..+++.|++++|..+++..-...+++......+-.||..++++++|...|++++..+|. .+..+.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH 115 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence 3567778888999999999999999998888777778888999999999999999999999999999999999 888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
+-.+|.+.+.|.+-.+.--+..+.-|+++-.
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 9999999999987666666666677887754
No 283
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.91 E-value=0.046 Score=52.12 Aligned_cols=162 Identities=16% Similarity=0.257 Sum_probs=80.5
Q ss_pred CCCeEEcccccCCCCChHHHHH--HHHhc-hhcCC----CeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHh
Q 011417 250 ENPYLFNGDFVDRGSFSVEVIL--TLFAF-KCMCP----SAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~--~l~~l-k~~~p----~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 322 (486)
.+.++|+||++|+|.....--+ ..-.+ ++..+ .-++.+.||||. |+... .....++.|.+.|
T Consensus 46 PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi-------g~~~~----~~~~~~~rf~~~F 114 (257)
T cd08163 46 PDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI-------GFGNG----VVLPVRQRFEKYF 114 (257)
T ss_pred CCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc-------CCCCC----CCHHHHHHHHHHh
Confidence 3569999999999986421111 11111 11111 358899999995 33221 1124467788888
Q ss_pred hcccccceeCCcEEEEeCcccCCCC---CCc--hhhcccccC--CCCCCCC-c-cc-ccccCCCCCCC-----CCCCCCC
Q 011417 323 CCLPLAHVLNQKVFVVHGGLFSVDG---VKL--SDIKTIDRF--CEPPEEG-L-MC-ELLWSDPQPLP-----GRGPSKR 387 (486)
Q Consensus 323 ~~lp~~~~i~~~~~~vHgGi~~~~~---~~~--~~i~~~~r~--~~~~~~~-~-~~-~llw~dp~~~~-----~~~~~~r 387 (486)
........+++-.|++=-++ +... ..+ .+..-+.+. ..++... + +. -=++..|...- .+.+.+.
T Consensus 115 g~~~~~~~~~~~~fV~Lds~-~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~ 193 (257)
T cd08163 115 GPTSRVIDVGNHTFVILDTI-SLSNKDDPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPLRESKTPLPY 193 (257)
T ss_pred CCCceEEEECCEEEEEEccc-cccCCcccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCccccCCCCCC
Confidence 75544445555434433233 1110 001 111101111 0111111 1 11 12343333211 1223333
Q ss_pred CCc--e--EcCHHHHHHHHHHCCCCceeeecccccccCceEec
Q 011417 388 GVG--L--SFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEH 426 (486)
Q Consensus 388 g~~--~--~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~ 426 (486)
+.| + .-.++..++.|+..+- .+|.-||+- ++.+..|
T Consensus 194 ~~g~~yq~~l~~~~s~~il~~~~P-~~vfsGhdH--~~C~~~h 233 (257)
T cd08163 194 GYGYQYQNLLEPSLSEVILKAVQP-VIAFSGDDH--DYCEVVH 233 (257)
T ss_pred CCCccceeecCHHHHHHHHHhhCC-cEEEecCCC--ccceeEc
Confidence 444 3 4578999999999999 999999994 5555544
No 284
>PLN03077 Protein ECB2; Provisional
Probab=96.91 E-value=0.0073 Score=68.15 Aligned_cols=127 Identities=18% Similarity=0.122 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPKGYYRR 88 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 88 (486)
+..+|..+...|.+.|+.++|++.|++..+. .|+ ...+..+-.++.+.|.+++|.+.|+...+..+ .+...|..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 3456666677777777777777777766553 344 33334444455566666666666666553211 123444455
Q ss_pred HHHHHHcCCHHHHHH--------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Q 011417 89 GAAYLAMGKFKEALK--------------------------------DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136 (486)
Q Consensus 89 g~~~~~~g~~~~A~~--------------------------------~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~ 136 (486)
..++.+.|++++|.+ ..+++++++|++...+..++.+|...++ +++
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~--~~~ 709 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK--WDE 709 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC--hHH
Confidence 555555555555544 4445566677777777777777755555 566
Q ss_pred hhcCcc
Q 011417 137 AIAVPE 142 (486)
Q Consensus 137 A~~~~~ 142 (486)
|....+
T Consensus 710 a~~vr~ 715 (857)
T PLN03077 710 VARVRK 715 (857)
T ss_pred HHHHHH
Confidence 655443
No 285
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.90 E-value=0.0094 Score=66.67 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYL 93 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~ 93 (486)
.+..+...|.+.+.+++|.++|++-++..-+....|..+|..+++..+-++|...+.+|++.-|. +.+.....|.+-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 45567778888899999999999999988888999999999999999999999999999999888 8888899999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.|+.+.+...|+-.+...|.-.+.|..+...- ++.+..+.+..+|+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e--ik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME--IKHGDIKYVRDLFE 1658 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHH--HccCCHHHHHHHHH
Confidence 999999999999999999999999998877766 44444566666666
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.87 E-value=0.011 Score=47.71 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=73.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEE-----------YGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 85 (486)
+|..++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999988876 455556777765442 2378888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
+.+|.=+.....|+++..-.+++|..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88887777777788888888887765
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.011 Score=56.63 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=102.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHH
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY---PKGYYRRGAAYLA 94 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~ 94 (486)
..+...+..|++.+|....++.++..|.+..++..--.+++.+|+.......+++.+-. +|+- ..+.=.++..+.+
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556667889999999999999999999999999999999999999999999999877 6665 3444456778889
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.|-|++|.+.-++|++++|.+.-+...++.++...++ ..++.+++.
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--~Keg~eFM~ 233 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR--HKEGKEFMY 233 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch--hhhHHHHHH
Confidence 9999999999999999999998888888888866665 677777655
No 288
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=96.81 E-value=0.0027 Score=60.03 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred eEEEccCCCCh------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 224 FTVCGDVHGQF------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 224 ~~v~GDihG~~------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
+.+++|+|... ..+.++++..... ..+.+++.||++++++.+.+++..+..+ .+..|++++||||..
T Consensus 2 i~~iSDlH~~~~~~~~~~~l~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 2 IAFSSDLHIDLNHFDTEEMLETLAQYLKKQ-KIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred EEEEEeecCCCCCCCHHHHHHHHHHHHHhc-CCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 78899999653 1234444433222 3456999999999877666666655553 345799999999964
No 289
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.023 Score=56.99 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
...|...|.--..+++++.|...+++||..+-.+...|...+.+-++.+....|...+++|+.+-|.....|+..-.+-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455666666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|+..-|.+.|++-++..|+.. +|. ..+...+.....+.|...++
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eq-aW~--sfI~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQ-AWL--SFIKFELRYKEIERARSIYE 198 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHH-HHH--HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999988753 332 22333344444566665555
No 290
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.036 Score=51.71 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 48 AVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 48 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
......||.++.. .+++.+|.-.|+..-+.-|..+.....++.|+..+|+|++|...++.|+..++++++++.++-
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444556666554 346888888888888877888899999999999999999999999999999999999998888
Q ss_pred HHHHHHhh
Q 011417 124 ECEKAVKK 131 (486)
Q Consensus 124 ~~~~~l~~ 131 (486)
-+-..+|.
T Consensus 249 v~a~~~Gk 256 (299)
T KOG3081|consen 249 VLALHLGK 256 (299)
T ss_pred HHHHHhCC
Confidence 77755554
No 291
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.024 Score=52.84 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 13 RAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 13 ~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
+-.++.++|..+.+ .+.+++|.-.|++.-+..|..+......|.|.+.+++|++|...++.|+..++++++++.++
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34456677777664 35799999999998888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH-HHHHHHhCCCCHHH
Q 011417 89 GAAYLAMGKFKEALKD-FQQVKKLSPNDPDA 118 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~-~~~al~~~p~~~~~ 118 (486)
-.+-..+|.-.++.+- ..+....+|+++-.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999999988666554 55566667877643
No 292
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.013 Score=50.66 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
..++..++..+...|++++|+..+++++..+|.+..+|..+-.+|...|+..+|++.|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345677888888999999999999999999999999999999999999999999999998754
No 293
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.72 E-value=0.023 Score=64.49 Aligned_cols=96 Identities=10% Similarity=0.011 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--------Y 81 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~ 81 (486)
+...+|..+...|++++|...+++++...... ..++.++|.++...|++++|...+++++..-.. .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 34445555555555555555555555432210 223444555555555555555555555543111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
...+..+|.++...|++++|...+++++..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 122334455555555565555555555544
No 294
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.70 E-value=0.069 Score=52.87 Aligned_cols=97 Identities=19% Similarity=0.318 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ--------N----------AVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
++-..-|..++++++|..|..-|..||++..+ . ..+-..|..||.++++.+-|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 33445567788999999999999999886421 1 23456789999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
++|.+...+...|.+...+.+|.+|.+.+.-|.-+
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766543
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.70 E-value=0.2 Score=43.58 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=94.3
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+.+....+..........++.+++...+...--+.|..+.+-..-|..+...|++.+|+..++.+.+..|..+.+--.++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34556778888899999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHH
Q 011417 90 AAYLAMGKFKEALKDFQQ-VKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~ 126 (486)
.|++.+|+. ....+-. +++ .+.++++......+.
T Consensus 86 ~CL~~~~D~--~Wr~~A~evle-~~~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 86 LCLYALGDP--SWRRYADEVLE-SGADPDARALVRALL 120 (160)
T ss_pred HHHHHcCCh--HHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 999999987 3333333 444 445666655555444
No 296
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.65 E-value=0.0086 Score=56.73 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
..+..-.+.|....+.|+.++|...|+.|++++|.++.++...|.....-++.-+|-++|-+|+.++|.+.+++.+.+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3344455666677778888888888888888888888888888888877788888888888888888888888777654
No 297
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.63 E-value=0.02 Score=59.58 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
..+.+.|.+.++...+..|+.+...+..|..+...|+.++|++.+++++..... ..-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 456788999999999999999999999999999999999999999999854333 2457899999999999999999
Q ss_pred HHHHHHHHhCCCCHHH-HHHHHHHHHHHhh
Q 011417 103 KDFQQVKKLSPNDPDA-AQKVKECEKAVKK 131 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~-~~~l~~~~~~l~~ 131 (486)
.+|.+..+.+.-.... .+..+.|+..+++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence 9999999865543333 3444555555554
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.63 E-value=0.0038 Score=38.54 Aligned_cols=31 Identities=32% Similarity=0.657 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666665554
No 299
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.62 E-value=0.0053 Score=58.52 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=44.2
Q ss_pred ceEEEccCCC-C-----------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHH----HHHhchhcCCCeEEE
Q 011417 223 HFTVCGDVHG-Q-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIYL 286 (486)
Q Consensus 223 ~~~v~GDihG-~-----------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~----~l~~lk~~~p~~v~~ 286 (486)
+++.++|+|- . ...|.++++.... ...+.+++.||++|+..-+.+... ++..|+...|-.|++
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~-~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKA-EQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHH-cCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4788899993 2 1233344433221 234569999999999866655433 333444333457999
Q ss_pred eccCCccc
Q 011417 287 SRGNHESK 294 (486)
Q Consensus 287 lrGNHE~~ 294 (486)
+.||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999974
No 300
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.62 E-value=0.03 Score=63.62 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------ 81 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 81 (486)
.......+|..+...|++++|...++++++..+.. ..+...+|.++...|++++|...+++++......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 34556668888999999999999999999865543 2456788999999999999999999999763321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+|.++...|++++|...+++++...... ...+..++.++...|+ +++|.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--~~~A~~~~~ 597 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--LDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 3466788999999999999999999999873221 1223345555544443 677766655
No 301
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.58 E-value=0.11 Score=48.66 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKL--------EEYGSAIQDASKAIEIDP 79 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p 79 (486)
|-..+++..++.++++.++|++|+...++-+++.|.+ ..+++.+|.+++.. .-..+|...++..+..-|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 3346788999999999999999999999999998875 56688888887653 234588899999999999
Q ss_pred CCHH---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhH
Q 011417 80 RYPK---------------GY--YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKL 132 (486)
Q Consensus 80 ~~~~---------------~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~ 132 (486)
++.- +. ...|..|.+.|.+-.|+.-++.+++.-|+.+ +++..+..++..+|..
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh
Confidence 8532 22 3457888899999999999999999877654 5677777888777763
No 302
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.58 E-value=0.0061 Score=58.64 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred ceEEEccCC-CC------------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCC-hHHHHHHHHhchhcCCCeEEEec
Q 011417 223 HFTVCGDVH-GQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSF-SVEVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 223 ~~~v~GDih-G~------------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~-~~e~l~~l~~lk~~~p~~v~~lr 288 (486)
++.+++|+| +. ...+.++++..... ..+.+|++||+++.|.. +.+-+..+...-...+-.++.++
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~-~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~ 80 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE-SLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVL 80 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC-CCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEec
Confidence 478899999 22 34455555544222 24569999999998873 22333322222222234689999
Q ss_pred cCCccccc
Q 011417 289 GNHESKSM 296 (486)
Q Consensus 289 GNHE~~~~ 296 (486)
||||....
T Consensus 81 GNHD~~~~ 88 (267)
T cd07396 81 GNHDLYNP 88 (267)
T ss_pred Cccccccc
Confidence 99997644
No 303
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=96.52 E-value=0.0082 Score=54.24 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCCeEEcccccCCCCCh--HHHHHHHHhchhcCC----CeEEEeccCCcc
Q 011417 250 ENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHES 293 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~--~e~l~~l~~lk~~~p----~~v~~lrGNHE~ 293 (486)
.+..+|+||++|.|+.+ .|....+..++-.++ -.++.+.||||.
T Consensus 43 PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 43 PDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred CCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 45699999999999964 346665555553322 477889999994
No 304
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.52 E-value=0.0085 Score=56.75 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=67.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
-.+.|.-..+.|+.++|...|+.|+.++|++++++..+|.......+.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344455567889999999999999999999999999999999999999999999999999999999988777653
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.51 E-value=0.0055 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQ 46 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 46 (486)
+++.+|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 306
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.50 E-value=0.0053 Score=39.12 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 85 YYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
|.+||.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 307
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.49 E-value=0.055 Score=52.41 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 011417 13 RAEELKALANEAFR-AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRR 88 (486)
Q Consensus 13 ~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l 88 (486)
....|...|...+. .++.+.|...|+.+++..|.+...|......+...++.+.|...|++++..-|... ..|...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45667888888777 56666699999999999999999999999999999999999999999998866654 577788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
...-...|+.+...+..+++.+.-|++...
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 888889999999999999999999986543
No 308
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.49 E-value=0.034 Score=43.73 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 011417 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAAYLAMGK 97 (486)
Q Consensus 34 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~ 97 (486)
+..++++++.+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+.-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 455677777777777777777777777777777777777777776654 3343334344444444
No 309
>PRK10941 hypothetical protein; Provisional
Probab=96.48 E-value=0.042 Score=52.57 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
..-+.++=..|.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++.-++..|+++.+-.....
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34466777888999999999999999999999999999999999999999999999999999999999887555443
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.073 Score=48.78 Aligned_cols=129 Identities=24% Similarity=0.255 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-- 82 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 82 (486)
.+-++.+..-|+.|-..++|..|=..|.+|-+..- +-+..|..-+.||.+. +.++|+.++++++++..+-.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHH
Confidence 34455566666777778899999888888876531 2356677777777555 99999999999999876643
Q ss_pred ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 83 ----KGYYRRGAAYLAM-GKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 83 ----~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+..+|.+|..- .++++|+.+|++|-+.-..... .....+..-..++ +|.+|+..++
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le--qY~~Ai~iye 178 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE--QYSKAIDIYE 178 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3455889888855 8999999999999887543321 1222233333333 3788888776
No 311
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.021 Score=59.43 Aligned_cols=103 Identities=22% Similarity=0.188 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-PKG 84 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~ 84 (486)
-|+.+--++..|+.+...|+.++|++.|++++..... ..-.++.+|.++..+.+|++|..++.+..+.+.-. +..
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 4566677889999999999999999999999854332 24558889999999999999999999999875543 334
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 011417 85 YYRRGAAYLAMGKF-------KEALKDFQQVKKLS 112 (486)
Q Consensus 85 ~~~lg~~~~~~g~~-------~~A~~~~~~al~~~ 112 (486)
.|..|.|+..+++. ++|.+.|.++-.+.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 55668999999999 77777777776553
No 312
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.35 E-value=0.088 Score=44.05 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 47 NAVYYANRAFAHTKLE---EYGSAIQDASKAIE-IDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
.....+++|.++.+.. +.++.+..++..++ -.|+ .-+..|.||..++++++|+.|+++.+..++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3566788999988765 46788999999986 4443 45788999999999999999999999999999999998876
Q ss_pred HHHHHHHHh
Q 011417 122 VKECEKAVK 130 (486)
Q Consensus 122 l~~~~~~l~ 130 (486)
...+..++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 666665444
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.17 Score=46.71 Aligned_cols=102 Identities=24% Similarity=0.184 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-----PRYP 82 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~ 82 (486)
+..+..-+..|...++|++|..++.+|++-..++ +.+|-..|.....+.++.++...+++|..+. |+.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3445556677778899999999999999655443 5667777888888999999999999998873 4444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (486)
..-...|--..+.-+.++|++.|++++.+--++
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 434444444456667899999999999875443
No 314
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.31 E-value=0.011 Score=57.15 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=44.1
Q ss_pred CceEEEccCCC------------ChHHHHHHHHHc-CCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEec
Q 011417 222 KHFTVCGDVHG------------QFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 222 ~~~~v~GDihG------------~~~~l~~~l~~~-~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lr 288 (486)
.++..++|+|= ....+.++++.. ...+..+.+|+.||+++.|. .+-...+...-...+..+++++
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~ 92 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLP 92 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeC
Confidence 45899999992 134566666543 22334466999999999884 2222222222222345699999
Q ss_pred cCCccc
Q 011417 289 GNHESK 294 (486)
Q Consensus 289 GNHE~~ 294 (486)
||||..
T Consensus 93 GNHD~~ 98 (275)
T PRK11148 93 GNHDFQ 98 (275)
T ss_pred CCCCCh
Confidence 999963
No 315
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.30 E-value=0.0075 Score=38.43 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
|.+||.+|.++|++++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 316
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.29 E-value=0.0082 Score=59.85 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=43.6
Q ss_pred ceEEEccCC-CC-----------hHHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHh--ch--hcCCCeEE
Q 011417 223 HFTVCGDVH-GQ-----------FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFA--FK--CMCPSAIY 285 (486)
Q Consensus 223 ~~~v~GDih-G~-----------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG-~~~~e~l~~l~~--lk--~~~p~~v~ 285 (486)
+++.++|+| |. ...+.++++.+.. ...+.+++.||++|+. +.+.+++.++.. ++ ...+-.|+
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~-~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKA-HGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHH-cCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 578889999 31 2233444433321 2345699999999985 445555444432 21 12356899
Q ss_pred EeccCCccc
Q 011417 286 LSRGNHESK 294 (486)
Q Consensus 286 ~lrGNHE~~ 294 (486)
++.||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999973
No 317
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.28 E-value=0.0089 Score=57.03 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=43.7
Q ss_pred eEEEccCCCChHHHHHHHHHcCC--CCCCCCeEEcccccCCCCC-hHHHHH----------H--HHhchhcCCCeEEEec
Q 011417 224 FTVCGDVHGQFYDLLNIFELNGL--PSEENPYLFNGDFVDRGSF-SVEVIL----------T--LFAFKCMCPSAIYLSR 288 (486)
Q Consensus 224 ~~v~GDihG~~~~l~~~l~~~~~--~~~~~~~~~lGd~vdrG~~-~~e~l~----------~--l~~lk~~~p~~v~~lr 288 (486)
+.|+||+||+++.+...++.... ....+-+|.+||+-..+.. ..+.+. + .+.=....|--++++.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 47899999999988764433211 1234569999999654432 333321 1 1111234577789999
Q ss_pred cCCccc
Q 011417 289 GNHESK 294 (486)
Q Consensus 289 GNHE~~ 294 (486)
||||..
T Consensus 81 GNHE~~ 86 (262)
T cd00844 81 GNHEAS 86 (262)
T ss_pred CCCCCH
Confidence 999964
No 318
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.18 E-value=0.071 Score=54.03 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 011417 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVK 109 (486)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al 109 (486)
..-...|+.|+...+.+...|.....-..+.+.+.+-...|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456779999999999999999998777777779999999999999999999999999988887776 899999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 011417 110 KLSPNDPDAAQKVKE 124 (486)
Q Consensus 110 ~~~p~~~~~~~~l~~ 124 (486)
+.+|+.+..|...-.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999999988765544
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=0.17 Score=50.48 Aligned_cols=71 Identities=15% Similarity=0.064 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFR---AKKYSQAIDLYSQA-IELNSQNAVYYANRAFAHTKL---------EEYGSAIQDASKAIE 76 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~ 76 (486)
.++.....+..|.++.+ .|+.++|+..+.++ ....+.+++.+..+|.+|.++ ...++|+.+|.++.+
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 44566677888888888 99999999999994 455677899999999998752 247899999999998
Q ss_pred hCCC
Q 011417 77 IDPR 80 (486)
Q Consensus 77 ~~p~ 80 (486)
.+|+
T Consensus 255 ~~~~ 258 (374)
T PF13281_consen 255 IEPD 258 (374)
T ss_pred CCcc
Confidence 8765
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.12 E-value=0.00099 Score=63.95 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=76.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Q 011417 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKF 134 (486)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~ 134 (486)
+.-.+..|.+++|++.|..++.++|..+..|-..+.++.++++...|++.|..|++++|+...-+...+.+...++. +
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~--~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN--W 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc--h
Confidence 34445678899999999999999999999999999999999999999999999999999998888888888877877 6
Q ss_pred HHhhcCcc
Q 011417 135 EEAIAVPE 142 (486)
Q Consensus 135 ~~A~~~~~ 142 (486)
++|...++
T Consensus 199 e~aa~dl~ 206 (377)
T KOG1308|consen 199 EEAAHDLA 206 (377)
T ss_pred HHHHHHHH
Confidence 77766666
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.07 E-value=0.011 Score=35.42 Aligned_cols=30 Identities=37% Similarity=0.778 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
+++.+|.++...+++++|...++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 322
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.073 Score=55.30 Aligned_cols=97 Identities=25% Similarity=0.248 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..+++.|..+++..+|..|++.|...++--|.+ +....+++.||..+.+.+.|++.++.|-+.+|.++-..+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 457888999999999999999999999876654 67788899999999999999999999999999999998888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~ 111 (486)
-.+....+.-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 88888999999999998877654
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.00 E-value=0.011 Score=35.29 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (486)
++..+|.++..++++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
No 324
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.99 E-value=0.044 Score=43.07 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhH
Q 011417 66 SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKL 132 (486)
Q Consensus 66 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l~~~ 132 (486)
..+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.+...++..
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 35678899999999999999999999999999999999999999998865 56777777777777764
No 325
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.96 E-value=0.018 Score=54.06 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHCCCCceeeecccccccCce---EecCCeEEEEecCCCCC
Q 011417 394 GADVTKRFLQDNSLGNLVVRSHEVKDEGYE---IEHDGKLITVFSAPNYC 440 (486)
Q Consensus 394 g~~~~~~~l~~~~~~~~iir~H~~~~~G~~---~~~~~~~~tifsa~~y~ 440 (486)
+.+.+.+.+++.++ ++++-||.-...-.. ...+| |+.+++|.=|
T Consensus 181 ~~~~~~~~~~~~~v-~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~ 227 (232)
T cd07393 181 DDSPISKLIEEYGV-DICVYGHLHGVGRDRAINGERGG--IRYQLVSADY 227 (232)
T ss_pred CHHHHHHHHHHcCC-CEEEECCCCCCcccccccceECC--EEEEEEcchh
Confidence 45677888899999 999999996422211 22455 5677777533
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.94 E-value=0.04 Score=38.45 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=17.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYA 52 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 52 (486)
++.+|..+++.|+|++|..+.+.+|+.+|++..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 444555555555555555555555555555544433
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.88 E-value=0.23 Score=49.40 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC-----
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS----QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DP----- 79 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p----- 79 (486)
..+....+...+....+.|.++.|...+.++...++ ..+.+....+..+...|+..+|+..++..+.. ..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445677899999999999999999999999987652 25778888899999999999999999888871 10
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 80 ----------------------------RYPKGYYRRGAAYLAM------GKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 80 ----------------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
..+.++..+|...... +..+++++.|++|++++|+...++..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0135677778777777 888999999999999999999999999888
Q ss_pred HHHHh
Q 011417 126 EKAVK 130 (486)
Q Consensus 126 ~~~l~ 130 (486)
+..+-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 74443
No 328
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.86 E-value=0.012 Score=53.51 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=37.6
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
..+.++.+.|.+.|.+++++.|+...-|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666666666666666666666666666666666666666666666666654
No 329
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.84 E-value=0.81 Score=48.04 Aligned_cols=127 Identities=13% Similarity=0.116 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--------- 80 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------- 80 (486)
...|...|..|-..|+.+.|...+++|++..-. -+.+|..-|..-.+..+++.|+...++|......
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 345788889999999999999999999887533 3678888888888888999999999988765221
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 81 ---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 81 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+...|..++......|-++.....|++.+.+.=-.|....+.+..+. ....++++...++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE--eh~yfeesFk~YE 535 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE--EHKYFEESFKAYE 535 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence 23568888888888899999999999999988888887777777663 3344777777777
No 330
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.83 E-value=0.23 Score=56.19 Aligned_cols=112 Identities=12% Similarity=-0.032 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011417 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (486)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (486)
|.-+.-.+.|++|-+.+ +-..+|..|..+|...+++++|.+.++..++.-......|...|..+....+-+.|...+++
T Consensus 1511 G~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred CcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33333334444443322 22456677777888888888888888888887777788888888888888888888888888
Q ss_pred HHHhCCC--CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 108 VKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 108 al~~~p~--~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|++.-|. +.+.....+++..+.|. .+.+..+++
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GD--aeRGRtlfE 1624 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGD--AERGRTLFE 1624 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCC--chhhHHHHH
Confidence 8888887 55666666666544443 566666666
No 331
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.82 E-value=0.15 Score=51.94 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
..+...+|.|..++|+.++|++.++..++..|. +...+.+|-.++..+++|.++...+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444556677777777777777777777766553 3456677777777777777776666654
No 332
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=95.81 E-value=0.018 Score=53.52 Aligned_cols=73 Identities=26% Similarity=0.305 Sum_probs=43.4
Q ss_pred eEEEccCC-CCh--------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhc-hhc--CCCeEE
Q 011417 224 FTVCGDVH-GQF--------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF-KCM--CPSAIY 285 (486)
Q Consensus 224 ~~v~GDih-G~~--------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~l-k~~--~p~~v~ 285 (486)
++.++|+| |.. ..+.++++..... ..+.+++.||++|....+.+.+..+... +.. .+..|+
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 67788888 221 2244454443222 3446999999999876555443333222 211 245789
Q ss_pred EeccCCcccccc
Q 011417 286 LSRGNHESKSMN 297 (486)
Q Consensus 286 ~lrGNHE~~~~~ 297 (486)
++.||||.....
T Consensus 81 ~~~GNHD~~~~~ 92 (223)
T cd00840 81 IIAGNHDSPSRL 92 (223)
T ss_pred EecCCCCCcccc
Confidence 999999976543
No 333
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.12 Score=48.12 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=100.5
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFK-EALK 103 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~ 103 (486)
+...-..|+.+-..+|.++|.+..+|..+=.++..++ +..+-+++++..++-+|.+..+|...-.+...+|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 4566788999999999999999999999988888765 6788899999999999999999999999999999998 8899
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 104 DFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+.++..+.++-.+|....-+.+..+. ++.-+.+..
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~--~~~EL~y~~ 171 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKD--YEDELAYAD 171 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhh--HHHHHHHHH
Confidence 9999999999999999998888887777 555555444
No 334
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.019 Score=55.66 Aligned_cols=118 Identities=26% Similarity=0.423 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS-----------Q--------NAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.......|+..++.++|+.|..-|.++++.-. + -...+.+++.+-...+.+..|+.....+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 44556678889999999999999999986311 1 1244667888899999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+..++....+++.++..+..+.++++|++.++.+....|++......+....+....
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999887776666544443
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.63 E-value=0.017 Score=52.61 Aligned_cols=62 Identities=23% Similarity=0.460 Sum_probs=57.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
......++.+.|.+.|.+++++-|+....|+++|....+.|+.+.|.+.|++.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34557789999999999999999999999999999999999999999999999999998754
No 336
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=95.61 E-value=0.12 Score=44.26 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=31.3
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccccc
Q 011417 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 300 (486)
.+.+.+|||+.-.-.+--+...++-.| |+++++++||||.-......
T Consensus 46 ~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~~~~ 92 (186)
T COG4186 46 DDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPMYRH 92 (186)
T ss_pred cceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcccccc
Confidence 456999999985444334444444333 79999999999975544333
No 337
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.093 Score=50.58 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
-|.+.-++.---..++..|+...-...+++.+.. +|+. ..+.-.++..+...|-|++|.+..++++++++.+.-+.
T Consensus 133 ~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 133 YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 3445555556667788899999999999998877 6666 44445567788899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhhHHHHHhhcCccccc
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP--DAAQKVKECEKAVKKLKFEEAIAVPESER 145 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~l~~~~~~~A~~~~~~~~ 145 (486)
..++.++...|++.++.+...+--..-.+.. ..+....-++..+....|++|+..|.+.-
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 9999999999999999998765432111100 11222222222244456777877777443
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.53 E-value=0.089 Score=48.62 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=66.9
Q ss_pred HccCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------CHHHH
Q 011417 26 RAKKYSQAIDLYSQAIEL----NSQ---NAVYYANRAFAHTKLEEYG-------SAIQDASKAIEIDPR------YPKGY 85 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~~~ 85 (486)
....+++|++.|.-|+-. ..+ -+..+..+|.+|..+++-+ .|+..|++|++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 445789999999988853 222 2677888999999999854 556666666654322 25678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
+.+|.+...+|++++|.++|.+++....
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999997643
No 339
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=95.47 E-value=0.034 Score=51.87 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCCeEEcccccCCCCC---hHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 250 ENPYLFNGDFVDRGSF---SVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~---~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
.+.++++||+++.... ..++..++-.+. ..+++++||||...
T Consensus 59 ~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 59 IEALIINGDLKHEFKKGLEWRFIREFIEVTF----RDLILIRGNHDALI 103 (225)
T ss_pred CCEEEEcCccccccCChHHHHHHHHHHHhcC----CcEEEECCCCCCcc
Confidence 4579999999975544 223333443332 47999999999654
No 340
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.0006 Score=66.31 Aligned_cols=192 Identities=10% Similarity=-0.127 Sum_probs=121.8
Q ss_pred CCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhc----cHHHHHHHHHHhh
Q 011417 248 SEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKL----SETFVELFAEVFC 323 (486)
Q Consensus 248 ~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~----~~~~~~~~~~~~~ 323 (486)
++....|+++++++++.++++.+-+.+..+..+......+++||+. .++++.++.-.. ...+++..++.+.
T Consensus 46 ~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~ 120 (476)
T KOG0918|consen 46 PDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRK 120 (476)
T ss_pred CcceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCc
Confidence 5566799999999999999999999999999998899999999953 333443322211 2245677888889
Q ss_pred cccccceeCCcEEEEeCcccCCCCCCchhhcccccCC----CCCCCCcccccccCCCCCCCCCC---CCCCCCceEcCHH
Q 011417 324 CLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFC----EPPEEGLMCELLWSDPQPLPGRG---PSKRGVGLSFGAD 396 (486)
Q Consensus 324 ~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~----~~~~~~~~~~llw~dp~~~~~~~---~~~rg~~~~fg~~ 396 (486)
.++..++.+ +++|.||+. .|.......+..+--.. +-..++ -..++-++-.....|. ..+++ |+.| -
T Consensus 121 ~~l~k~i~~-~il~~~~l~-~Pht~hcla~g~v~vs~lGd~~gn~kg-~f~llD~~~~~k~tw~~~~~~p~~-gyDf--w 194 (476)
T KOG0918|consen 121 PSLEKTIDP-DILEKTGLA-CPHTSHCLASGNVMVSCLGDAEGNAKG-GFLLLDSDFNEKGTWEKPGHSPLF-GYDF--W 194 (476)
T ss_pred cceeeeech-hhHhhcCCc-CCcccccccCCCeeEEeecccccCCcC-CeEEecCccceecccccCCCcccc-ccce--e
Confidence 999988866 999999998 77665444444332111 111111 1222222211100121 23332 2211 1
Q ss_pred HHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 011417 397 VTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 453 (486)
Q Consensus 397 ~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~ 453 (486)
..-++.....- +...+.|.. .||...+-.-.++.++.+-|.-..+|.++.+.+.
T Consensus 195 yqpr~~~mIst-ewgap~~~~--~gf~~~~v~d~lyg~~lhvy~w~~~~~~QtidL~ 248 (476)
T KOG0918|consen 195 YQPRHNVMIST-EWGAPNALR--KGFNPADVEDGLYGSHLHVYQWSPGELKQTIDLG 248 (476)
T ss_pred eccccceEEee-cccCchhhh--cCCChhHhhccceeeeeEEEecCCccceeEEecC
Confidence 23345566666 777888885 5665544222388999998887788889999993
No 341
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=95.38 E-value=0.029 Score=49.22 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=28.1
Q ss_pred CCCeEEcccccCCCCChH-HH----HHHHHhchhcC-CCeEEEeccCCccc
Q 011417 250 ENPYLFNGDFVDRGSFSV-EV----ILTLFAFKCMC-PSAIYLSRGNHESK 294 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~-e~----l~~l~~lk~~~-p~~v~~lrGNHE~~ 294 (486)
.+.++++||++|.|..+. +. +..+..+.... +-.+++++||||..
T Consensus 39 pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 39 PDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred CCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 457999999999886432 22 22222221111 35799999999964
No 342
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.38 E-value=0.049 Score=55.32 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=52.0
Q ss_pred CCceEEEccCCCC------------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhc---------
Q 011417 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM--------- 279 (486)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~--------- 279 (486)
..++++++|+|-. +..+.++++.+.. ...+-+++.||+.|++.-|.+++..++.+--.
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~-~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKE-QDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHH-cCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 3468999999943 4455666666532 23566889999999999998888665443211
Q ss_pred ---------------------------CCCeEEEeccCCcccc
Q 011417 280 ---------------------------CPSAIYLSRGNHESKS 295 (486)
Q Consensus 280 ---------------------------~p~~v~~lrGNHE~~~ 295 (486)
..--|+.+-||||...
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1337999999999865
No 343
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=95.37 E-value=0.034 Score=56.75 Aligned_cols=70 Identities=21% Similarity=0.223 Sum_probs=42.0
Q ss_pred ceEEEccCC-CCh-------HH----HHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHH----HHHhchhcCCCeEEE
Q 011417 223 HFTVCGDVH-GQF-------YD----LLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVIL----TLFAFKCMCPSAIYL 286 (486)
Q Consensus 223 ~~~v~GDih-G~~-------~~----l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~----~l~~lk~~~p~~v~~ 286 (486)
+++.++|+| |.. .+ +.++.+.... ...+.+++.||++|++..+.+... ++..|+- .+-.|++
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~-~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~ 79 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQE-HQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVV 79 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHh-cCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEE
Confidence 478888999 321 11 2223332211 234569999999999866554432 3333432 2356999
Q ss_pred eccCCccc
Q 011417 287 SRGNHESK 294 (486)
Q Consensus 287 lrGNHE~~ 294 (486)
+.||||..
T Consensus 80 I~GNHD~~ 87 (407)
T PRK10966 80 LAGNHDSV 87 (407)
T ss_pred EcCCCCCh
Confidence 99999964
No 344
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=95.22 E-value=0.043 Score=50.73 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHCCCCceeeecccccc
Q 011417 393 FGADVTKRFLQDNSLGNLVVRSHEVKD 419 (486)
Q Consensus 393 fg~~~~~~~l~~~~~~~~iir~H~~~~ 419 (486)
..+..+.+.++..+. +.+|-||.-..
T Consensus 176 ~~~~~~~~~~~~~~~-~~~i~GH~H~~ 201 (217)
T cd07398 176 VFEEAVARLARRKGV-DGVICGHTHRP 201 (217)
T ss_pred HHHHHHHHHHHhcCC-CEEEECCCCCC
Confidence 345667788889999 99999999754
No 345
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.22 E-value=0.05 Score=47.19 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=49.0
Q ss_pred EEEccCCCChHHHHHHHHHc-CCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCc
Q 011417 225 TVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHE 292 (486)
Q Consensus 225 ~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE 292 (486)
+|+||.||+++.+..-++.. .....-+-.+++||+..-...+ +.+.-.+.=....|--++++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC
Confidence 47899999999998877652 2222345689999999765554 4455555556678889999999998
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.21 E-value=1.3 Score=37.91 Aligned_cols=87 Identities=13% Similarity=-0.016 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
.-...+...........+.+++...+...--+.|+.+.+-..-|..+...|++.+|+..++...+..+..+.+--.++.|
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34556667777777799999999999888888999999999999999999999999999999998888888888889999
Q ss_pred HHHcCCH
Q 011417 92 YLAMGKF 98 (486)
Q Consensus 92 ~~~~g~~ 98 (486)
++.+|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 9999986
No 347
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.35 Score=50.16 Aligned_cols=107 Identities=18% Similarity=0.050 Sum_probs=88.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHH
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK-AIEIDPRYPKGYYRR------GAAY 92 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~ 92 (486)
+...+...++...|......++..+|+++.+..+||.+....|..-.++..+.. +....|++......+ +...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 566666778888899999999999999999999999999888876666655544 889999988776555 8888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
..+++..++....+++.++.|+++.+...+....
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 8999999999999999999999987765555543
No 348
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.08 E-value=0.47 Score=42.44 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHH--
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYPK-- 83 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~-- 83 (486)
.+.-.++..+|..|.+.|+.++|++.|.++.+..... ...+.++-.+....+++..+.....++-.+-. .+..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 3445667788888888888888888888876654332 45567777777778888888888777765532 2222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 84 --GYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 84 --~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
.....|..+...++|.+|.+.|-.+.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 22334566667778888877776554
No 349
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.035 Score=55.93 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-h--------C---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIE-L--------N---------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--------~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
..+.++|.++++.+.|..+..+|.+|++ . . ....++.+|.|..|...|+.-.|.++|.+++.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3467999999999999999999999996 1 1 23468899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHc
Q 011417 77 IDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~ 95 (486)
..-.++..|.++|.|+...
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999887643
No 350
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.093 Score=48.42 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=90.3
Q ss_pred CCCCCCeEEcccccC--CCCC-----hHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHH
Q 011417 247 PSEENPYLFNGDFVD--RGSF-----SVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFA 319 (486)
Q Consensus 247 ~~~~~~~~~lGd~vd--rG~~-----~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~ 319 (486)
++..+.++++||++| .|.+ -.+|...|..+ ...+.+|+.+.||||. .+...++ .-.
T Consensus 27 a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i~GN~Df-ll~~~f~---------------~~~ 89 (237)
T COG2908 27 AAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYIHGNHDF-LLGKRFA---------------QEA 89 (237)
T ss_pred cccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEecCchHH-HHHHHHH---------------hhc
Confidence 334567999999996 2322 23444444433 4567899999999993 2222211 001
Q ss_pred HHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccC-CCC----------CCC--CcccccccCCCCCCCCCC
Q 011417 320 EVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRF-CEP----------PEE--GLMCELLWSDPQPLPGRG 383 (486)
Q Consensus 320 ~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~-~~~----------~~~--~~~~~llw~dp~~~~~~~ 383 (486)
-.+.-+|-..++ |.+++++||....+.. .--.+-|. ... +-. --+..=+|+.- .|.
T Consensus 90 g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~----~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s----~~~ 161 (237)
T COG2908 90 GGMTLLPDPIVLDLYGKRILLAHGDTFCTDD----RAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLS----SWA 161 (237)
T ss_pred CceEEcCcceeeeecCcEEEEEeCCcccchH----HHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhh----HHh
Confidence 113345555555 6799999997743321 11111110 000 000 00111233332 111
Q ss_pred CCCCCCc---eEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCC
Q 011417 384 PSKRGVG---LSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTL 457 (486)
Q Consensus 384 ~~~rg~~---~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~ 457 (486)
....... ....+..+.+-++++++ +.||.||+-....-... + ++=--..+ -...++++.+.++.+
T Consensus 162 k~~~~~~~~i~d~~~~~v~~~~~~~~v-d~vI~GH~Hr~ai~~i~--~--~~yi~lGd----W~~~~s~~~v~~~~~ 229 (237)
T COG2908 162 KKKVKKAVNIMDVNPAAVADEARRHGV-DGVIHGHTHRPAIHNIP--G--ITYINLGD----WVSEGSILEVDDGGL 229 (237)
T ss_pred HHhhhhHHHHHHhhHHHHHHHHHHcCC-CEEEecCcccHhhccCC--C--ceEEecCc----chhcceEEEEecCcE
Confidence 1111111 14567888889999999 99999999765554432 2 11111111 225588999844433
No 351
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.88 E-value=0.34 Score=50.72 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------------------QNAVYYANRAFAHTKLEEYGSAIQDAS 72 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (486)
.+-+..|..-|..-++..+++.|+.+.+.|...-. .+..+|..++......|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35577899999999999999999999999875411 124667788888888999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHH-HHHHHHHHHhhHHHHHhhcCccccccccc
Q 011417 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQ-KVKECEKAVKKLKFEEAIAVPESERHSVA 149 (486)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~-~l~~~~~~l~~~~~~~A~~~~~~~~~~~a 149 (486)
+.+.+.=-.+..-.+.|..+....-+++|.+.|++.+.+- |.-.+.|. .|-..-...+..+.+.|..+++
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE------- 574 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE------- 574 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-------
Confidence 9999988899999999999999999999999999999886 44455554 3334444566666788888887
Q ss_pred ccccccccccCC
Q 011417 150 DSIDYQSIEVEP 161 (486)
Q Consensus 150 ~~~~~~~l~~~~ 161 (486)
++++..|
T Consensus 575 -----qaL~~Cp 581 (835)
T KOG2047|consen 575 -----QALDGCP 581 (835)
T ss_pred -----HHHhcCC
Confidence 6776665
No 352
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=94.86 E-value=0.058 Score=52.56 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=39.7
Q ss_pred CceEEEccCCCC---hHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 222 KHFTVCGDVHGQ---FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 222 ~~~~v~GDihG~---~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
.++.++||.|.. -.+....+... ....+-++++||+++-+... -+.+..+-.+... --++.++||||.
T Consensus 5 ~~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~~~GNHD~ 80 (294)
T cd00839 5 FKFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASY--VPYMVTPGNHEA 80 (294)
T ss_pred EEEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhc--CCcEEcCccccc
Confidence 358999999952 22333333222 23345689999999544322 1122222222222 357889999997
Q ss_pred ccc
Q 011417 294 KSM 296 (486)
Q Consensus 294 ~~~ 296 (486)
...
T Consensus 81 ~~~ 83 (294)
T cd00839 81 DYN 83 (294)
T ss_pred ccC
Confidence 644
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.86 E-value=0.24 Score=53.14 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQA----------IELNSQ----------NAVYYANRAFAHTKLEEYGSAIQDASK 73 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (486)
-..+++.|..+-..++.+.|+++|+++ |..+|. +...|.-.|..+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 456889999999999999999999986 233443 455566678888899999999999998
Q ss_pred HHH---------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 74 AIE---------------------IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 74 al~---------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
|-. ....+-.+.|.+|..|...|++.+|+..|.+|-..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 753 23456778999999999999999999988876544
No 354
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.57 Score=39.70 Aligned_cols=120 Identities=27% Similarity=0.406 Sum_probs=86.6
Q ss_pred eEEEccCCCC--hHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccC
Q 011417 224 FTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (486)
Q Consensus 224 ~~v~GDihG~--~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (486)
+.+.||+|=. -.+|..-|++.-.|..-.+.+.+|+.- |.|++.+|-.+. +.|+++||--|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 6789999954 456677777766777777899999965 789999998774 7899999986532
Q ss_pred ChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCC
Q 011417 302 FEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP 378 (486)
Q Consensus 302 ~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~ 378 (486)
..-|..-+| .-++=||||-.- +=|+||
T Consensus 67 ---------------------~~yP~~kvvtvGqfkIG~chGhqV---------------------------iP~gd~-- 96 (183)
T KOG3325|consen 67 ---------------------LKYPENKVVTVGQFKIGLCHGHQV---------------------------IPWGDP-- 96 (183)
T ss_pred ---------------------ccCCccceEEeccEEEEeecCcEe---------------------------ecCCCH--
Confidence 123333333 237889998431 226664
Q ss_pred CCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCe
Q 011417 379 LPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGK 429 (486)
Q Consensus 379 ~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~ 429 (486)
+.+.-.-+++++ +.++-||+...+.|+ ++|+
T Consensus 97 -----------------~sL~~LaRqldv-DILl~G~Th~f~Aye--~eg~ 127 (183)
T KOG3325|consen 97 -----------------ESLALLARQLDV-DILLTGHTHKFEAYE--HEGK 127 (183)
T ss_pred -----------------HHHHHHHHhcCC-cEEEeCCceeEEEEE--eCCc
Confidence 468888899999 999999998777665 3454
No 355
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.72 E-value=0.63 Score=40.49 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (486)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|++.+|+..++.+..-.|..+.+...++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44556666777888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhHHH
Q 011417 129 VKKLKF 134 (486)
Q Consensus 129 l~~~~~ 134 (486)
++...+
T Consensus 91 ~~D~~W 96 (160)
T PF09613_consen 91 LGDPSW 96 (160)
T ss_pred cCChHH
Confidence 877543
No 356
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=94.71 E-value=0.056 Score=48.79 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=42.6
Q ss_pred cCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH-HHHHHhchhcC---------------------CCeEEE
Q 011417 229 DVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV-ILTLFAFKCMC---------------------PSAIYL 286 (486)
Q Consensus 229 DihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~-l~~l~~lk~~~---------------------p~~v~~ 286 (486)
|++|+-.=|.++++..-+....+..+||||++|.|--+-+- -......+-.+ .-.+++
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 66677777778887765555566799999999998543332 22233332211 246789
Q ss_pred eccCCcc
Q 011417 287 SRGNHES 293 (486)
Q Consensus 287 lrGNHE~ 293 (486)
|.||||.
T Consensus 104 V~GNHDI 110 (193)
T cd08164 104 IAGNHDV 110 (193)
T ss_pred ECCcccC
Confidence 9999996
No 357
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=0.24 Score=46.79 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.....++=.++...++++.|..+.++.+.++|+++.-+.-.|.+|.++|.+.-|++.++..++..|+++.+-.......
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445566677889999999999999999999999999999999999999999999999999999999998765544443
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.53 E-value=0.39 Score=47.93 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HhCCCCHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTK---LEEYGSAIQDASKAI-EIDPRYPKGYY 86 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~~ 86 (486)
++..++-..|....+|+.=+++.+..-.+ -++...+...+|.++-+ .|+.++|+..+..++ ...+.+++.+.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444445555566666666655554443 33445556666666666 666666666666633 33445566666
Q ss_pred HHHHHHHHcC---------CHHHHHHHHHHHHHhCCC
Q 011417 87 RRGAAYLAMG---------KFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 87 ~lg~~~~~~g---------~~~~A~~~~~~al~~~p~ 114 (486)
.+|.+|...- ..++|+.+|.++.+.+|+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 6666655431 245666666666666643
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.49 E-value=1.2 Score=43.12 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCC
Q 011417 14 AEELKALANEAFR----AKKYSQAIDLYSQAIELNSQN-AVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 14 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~ 81 (486)
+.+.+.+|..+.. ..++.+|..+|++|.+..-.. ..+...+|.+|..-. +...|...|.++-... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3456666666665 447777777777776654333 344666666665531 2225777777766654 6
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
+.+.+.+|.+|.. ..++++|..+|++|-+... ..+.+.++
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 6677777766643 2366777777777776654 55666666
No 360
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=94.30 E-value=0.055 Score=51.19 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=27.5
Q ss_pred CCCeEEcccccCCCC-----C-------h----HHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 250 ENPYLFNGDFVDRGS-----F-------S----VEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~-----~-------~----~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.+.++++||++|+.. . . .++..++-.|. .+-.|+++.||||..
T Consensus 36 ~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~ 94 (243)
T cd07386 36 VKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAV 94 (243)
T ss_pred ccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCcc
Confidence 467999999999731 0 0 11223333333 346899999999974
No 361
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.29 E-value=0.58 Score=49.97 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHh
Q 011417 13 RAEELKALANEAFR-----AKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLE-----EYGSAIQDASKAIEI 77 (486)
Q Consensus 13 ~~~~~~~~g~~~~~-----~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~ 77 (486)
++.+...+|.+++. ..|.+.|+.+|+.+.+. .-..+.+.+.+|.+|.+.. +++.|+..|.++-+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 45566777777764 46899999999999871 1115668899999999853 678899999999876
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 78 DPRYPKGYYRRGAAYLAMG---KFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (486)
+++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.++.
T Consensus 323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 56778899999988766 678999999999865 57888999999874
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.25 E-value=0.53 Score=35.55 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHHh
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA---FAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 77 (486)
.+......|..++...+.++|+..++++++..++.+.-+..+| .+|...|+|++++++.-+-+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888888888888888888777766555554 4567788888887776655543
No 363
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.16 E-value=0.13 Score=47.58 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=45.9
Q ss_pred ceEEEccCCCChHHHH----------------HHHHHcCCCCCCCCeEEcccccCCCCC-----hHHHHHHHHhchhcCC
Q 011417 223 HFTVCGDVHGQFYDLL----------------NIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAFKCMCP 281 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~----------------~~l~~~~~~~~~~~~~~lGd~vdrG~~-----~~e~l~~l~~lk~~~p 281 (486)
+..|+.|+|=.+.... +.+...-.....+.+|++||.-.-.+. ..|+-.++-.++..
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~-- 98 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER-- 98 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC--
Confidence 5899999995554433 222211111234569999999854333 34444444444432
Q ss_pred CeEEEeccCCcccccccccCC
Q 011417 282 SAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 282 ~~v~~lrGNHE~~~~~~~~~~ 302 (486)
.++++|||||...-.-..++
T Consensus 99 -evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 99 -EVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred -cEEEEeccCCCccccccccC
Confidence 59999999997655544444
No 364
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.04 E-value=0.13 Score=33.30 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
.++.++|.+|...|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777777778888887777777765
No 365
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=93.99 E-value=0.18 Score=48.76 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=47.2
Q ss_pred ceEEEccCCCC------hHHHHHHHHHcCCCCCCCCeEEcccccCCCC-ChHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 223 HFTVCGDVHGQ------FYDLLNIFELNGLPSEENPYLFNGDFVDRGS-FSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 223 ~~~v~GDihG~------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~-~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
++..+.|+|-. ...+..+++..... ..+.+|+.||+.+.|. .+.+-+.-++. +...|..+++++||||.+.
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~-~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~ 79 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQL-KPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDARV 79 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcC-CCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcCCc
Confidence 47788899866 22333444544432 2367999999999973 22222222222 3466888999999999876
Q ss_pred ccc
Q 011417 296 MNK 298 (486)
Q Consensus 296 ~~~ 298 (486)
.+.
T Consensus 80 ~~~ 82 (301)
T COG1409 80 VNG 82 (301)
T ss_pred hHH
Confidence 653
No 366
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.93 E-value=0.14 Score=33.24 Aligned_cols=30 Identities=30% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
+.++.++|.+|..+|++++|+..++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356777888888888888888888887765
No 367
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.85 E-value=0.13 Score=49.01 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=75.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 011417 37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR-RGAAYLAMGKFKEALKDFQQVKKLSPND 115 (486)
Q Consensus 37 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (486)
|.++....|.++..|...+..-...+-|.+-...|.+++..+|.+++.|.. -+.-+...++.+.|...|+++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678999999999888888999999999999999999999999877 4566778899999999999999999999
Q ss_pred HHHHHHHHH
Q 011417 116 PDAAQKVKE 124 (486)
Q Consensus 116 ~~~~~~l~~ 124 (486)
|..|...-.
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 988765543
No 368
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=93.80 E-value=0.15 Score=48.73 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.1
Q ss_pred HHHHHHHCCCCceeeecccccccCceEec
Q 011417 398 TKRFLQDNSLGNLVVRSHEVKDEGYEIEH 426 (486)
Q Consensus 398 ~~~~l~~~~~~~~iir~H~~~~~G~~~~~ 426 (486)
+.+.+++.++ ++++-||.-...+....|
T Consensus 190 ~~~ll~~~~v-~~vl~GH~H~~~~~~p~h 217 (256)
T cd07401 190 FKDLLKKYNV-TAYLCGHLHPLGGLEPVH 217 (256)
T ss_pred HHHHHHhcCC-cEEEeCCccCCCcceeee
Confidence 7788899999 999999998877745554
No 369
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.79 E-value=1.5 Score=43.35 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=75.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 35 DLYSQAIELNSQNAVYYANRAFAHTKLEE------------YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
..|++.++.+|.+..+|..+....-..-. .+.-+..+++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988765443322 467788999999999999999888888888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 103 KDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+-+++++..+|++...|..+-...
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999998876554443
No 370
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.5 Score=44.71 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=65.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
..++=..+...++++.|..+-++.+.++|+++.-+.-+|.+|.++|.+..|++.++..++.-|+.+.+-...+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 44555677889999999999999999999999999999999999999999999999999999999877655443
No 371
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.68 E-value=0.16 Score=49.05 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=46.2
Q ss_pred CCceEEEccCCCChHH--HHHHHHH-cCCCCCCCCeEEcccccCC-C-CChHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 221 GKHFTVCGDVHGQFYD--LLNIFEL-NGLPSEENPYLFNGDFVDR-G-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 221 ~~~~~v~GDihG~~~~--l~~~l~~-~~~~~~~~~~~~lGd~vdr-G-~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
+.+++-+.|+|-.... ....+.. ....+ +-+++.|||+|+ . +....+...|..|+ .|-.||.+-||||...
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~--DlivltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~~~ 119 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELP--DLIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDYGV 119 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCC--CEEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEeccccccc
Confidence 3458889999966544 2222222 22222 568889999995 4 44555566666666 5668999999997543
No 372
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=93.65 E-value=5.7 Score=36.53 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=108.7
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEccccc--CCCCChHHHHHH-HHhchhcCCCeEEEeccCCccccccc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILT-LFAFKCMCPSAIYLSRGNHESKSMNK 298 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~v--drG~~~~e~l~~-l~~lk~~~p~~v~~lrGNHE~~~~~~ 298 (486)
.++..+.|+||..+.+.+++...... ..+-+++.||+. +.|+.-.-.-.. +-.++ ...-.|+.++||-|...+..
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~-~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~~~v~~ 81 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADI-RADLLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDPPEVID 81 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhc-cCCEEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCChHHHHH
Confidence 46889999999999999988876533 345688899999 888743322221 33333 23468999999977654321
Q ss_pred ccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCC------CCchhhcccccC-CCCCCCCccccc
Q 011417 299 IYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDG------VKLSDIKTIDRF-CEPPEEGLMCEL 371 (486)
Q Consensus 299 ~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~------~~~~~i~~~~r~-~~~~~~~~~~~l 371 (486)
. ....+..+. +-...+++-.+|-=||. .|.. .+-++|.+.-+. .+...+ ...=+
T Consensus 82 ~-------l~~~~~~v~----------~~v~~i~~~~~~G~Ggs-n~tp~nt~~e~~E~~I~s~l~~~v~~~~~-~~~Il 142 (226)
T COG2129 82 V-------LKNAGVNVH----------GRVVEIGGYGFVGFGGS-NPTPFNTPREFSEDEIYSKLKSLVKKADN-PVNIL 142 (226)
T ss_pred H-------HHhcccccc----------cceEEecCcEEEEeccc-CCCCCCCccccCHHHHHHHHHHHHhcccC-cceEE
Confidence 1 000000000 01112232233333444 2211 122333322211 000000 00001
Q ss_pred ccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEE
Q 011417 372 LWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIR 451 (486)
Q Consensus 372 lw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~ 451 (486)
+..-|--...-. .+-| -..-|..++.++.+..+- .+.|.||=-...|+..- | =||+-.|.-. ..-..|++.
T Consensus 143 ~~HaPP~gt~~d-~~~g-~~hvGS~~vr~~ieefqP-~l~i~GHIHEs~G~d~i--G--~TivVNPG~~--~~g~yA~i~ 213 (226)
T COG2129 143 LTHAPPYGTLLD-TPSG-YVHVGSKAVRKLIEEFQP-LLGLHGHIHESRGIDKI--G--NTIVVNPGPL--GEGRYALIE 213 (226)
T ss_pred EecCCCCCcccc-CCCC-ccccchHHHHHHHHHhCC-ceEEEeeeccccccccc--C--CeEEECCCCc--cCceEEEEE
Confidence 111111100000 1222 124588999999999999 99999997766777532 2 3566666432 345577788
Q ss_pred EecCCCceeEEEEe
Q 011417 452 FEAPTLKPNIVTFA 465 (486)
Q Consensus 452 ~~~~~~~~~~~~~~ 465 (486)
+ .++ .++..+|.
T Consensus 214 l-~~~-~Vk~~~~~ 225 (226)
T COG2129 214 L-EKE-VVKLEQFS 225 (226)
T ss_pred e-cCc-EEEEEEec
Confidence 8 333 55555653
No 373
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.54 E-value=0.58 Score=52.44 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=85.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLE-------EYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
....+++...+.|++|+..|++.-.-.|. ..++.+.+|.....+- .+++|+..|++.-. .|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 34557788899999999999999888875 4678888888776432 47777777777433 4666777889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
.|.+|..+|+|++-+++|.-|++..|++|........+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 99999999999999999999999999999865444433
No 374
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=93.51 E-value=1.7 Score=44.35 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=106.2
Q ss_pred ceEEEccCCC-ChHHHHHHH----HHcCCC----CCCCCeEEcccccCC-CCC-----------hHHHHHHHHhchhcCC
Q 011417 223 HFTVCGDVHG-QFYDLLNIF----ELNGLP----SEENPYLFNGDFVDR-GSF-----------SVEVILTLFAFKCMCP 281 (486)
Q Consensus 223 ~~~v~GDihG-~~~~l~~~l----~~~~~~----~~~~~~~~lGd~vdr-G~~-----------~~e~l~~l~~lk~~~p 281 (486)
.+..++|+|- ...-+...| +..+-+ +...-++..||.||. |-. ..|-...+..+--.-|
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp 306 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVP 306 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCC
Confidence 4788999995 333232222 222212 122224456799994 211 1122222322222334
Q ss_pred C--eEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhccccccee-CCcEEEEeCcccCCCCCCchhhccccc
Q 011417 282 S--AIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDR 358 (486)
Q Consensus 282 ~--~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r 358 (486)
. .|++.+|||+.-......-+..+..+ .++...+-.|=.=|.-.-+ |..+|..|| .+++||.+.-.
T Consensus 307 ~~I~v~i~PGnhDa~r~a~PQp~~~~~~k----slf~~~n~~~v~NP~~~~l~G~~vL~~hG-------~sidDii~~vP 375 (481)
T COG1311 307 EHIKVFIMPGNHDAVRQALPQPHFPELIK----SLFSLNNLLFVSNPALVSLHGVDVLIYHG-------RSIDDIIKLVP 375 (481)
T ss_pred CCceEEEecCCCCccccccCCCCcchhhc----ccccccceEecCCCcEEEECCEEEEEecC-------CCHHHHHhhCC
Confidence 4 78899999997655433322222211 1222221111122333333 347888887 36777665432
Q ss_pred CC--CCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecCCeEEEEecC
Q 011417 359 FC--EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSA 436 (486)
Q Consensus 359 ~~--~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa 436 (486)
.. +.+...+-+-|.|.-=.+..|. . ..--+.. +..|-.-.+.++++.||+.. -|+....+.+++..+|=
T Consensus 376 ~~~~~~~~~ame~lLk~rHlaPtygg------~-~p~aP~~-kD~lVIeevPDv~~~Ghvh~-~g~~~y~gv~~vns~T~ 446 (481)
T COG1311 376 GADYDSPLKAMEELLKRRHLAPTYGG------T-LPIAPET-KDYLVIEEVPDVFHTGHVHK-FGTGVYEGVNLVNSGTW 446 (481)
T ss_pred CCCccchHHHHHHHHHhcccCCCCCC------c-cccccCC-cCceeeccCCcEEEEccccc-cceeEEeccceEEeeee
Confidence 21 1111122233445432221110 0 0000111 11122223348899999985 99999888888888887
Q ss_pred CCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011417 437 PNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 437 ~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 466 (486)
+.+ .-.+-++.|.-...+..++.|..
T Consensus 447 q~q----Tefqk~vni~p~~~~v~vv~~~~ 472 (481)
T COG1311 447 QEQ----TEFQKMVNINPTPGNVPVVDFDS 472 (481)
T ss_pred cch----hccceEEEecCcccceeEEeccc
Confidence 764 44566777733345555566544
No 375
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=1.6 Score=39.12 Aligned_cols=88 Identities=19% Similarity=0.050 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECE 126 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~ 126 (486)
-..+|..+...+++++|+..++.++....+. +-+-.+||.+...+|.+++|+..+...-. +... ..-...|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 4557888999999999999999998764432 34678899999999999999998875422 1111 2234566777
Q ss_pred HHHhhHHHHHhhcCcc
Q 011417 127 KAVKKLKFEEAIAVPE 142 (486)
Q Consensus 127 ~~l~~~~~~~A~~~~~ 142 (486)
...|+ -.+|+..++
T Consensus 170 l~kg~--k~~Ar~ay~ 183 (207)
T COG2976 170 LAKGD--KQEARAAYE 183 (207)
T ss_pred HHcCc--hHHHHHHHH
Confidence 55554 567776666
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.37 E-value=2.1 Score=42.27 Aligned_cols=105 Identities=7% Similarity=-0.016 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKK------------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
..++|.+.++|..+....-..-. .+..+..|++||+.+|++...+..+-.+..+.-+-++..+-++++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~ 91 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEEL 91 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35678888888888765543322 567788899999999999999999888888888999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 011417 75 IEIDPRYPKGYYRRGAAYLA---MGKFKEALKDFQQVKKL 111 (486)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~ 111 (486)
+..+|++...|...-..... .-.+.+....|.++++.
T Consensus 92 l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 92 LFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99999998888765432222 23467777777777764
No 377
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=1.7 Score=40.38 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---C---H
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---Y---P 82 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~---~ 82 (486)
+.++-..|...-....+.++..+|++|..+ .|+.+..-...|.-....-+.++|++.|++++.+-.. . .
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 334444444555556666666666666554 2444444444444444555566666666666544221 1 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVK----KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.+-..+.++..+..+.+|-..+.+-. +.+.-+......++.++..+-..+|..|-..+.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 223334455555666665555544422 222222233334444444444444444444433
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.11 E-value=0.26 Score=50.97 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=55.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 37 YSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 37 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
...+++..|.+...+..-+..+...|+..+|..++..++..-|+.. .++..+|.++...|...+|--.+..|+.-.|.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 3444555555444433333333445667777777777766665543 25566666777777766666666666655555
Q ss_pred CHHHHHHHHHHHHHHhh
Q 011417 115 DPDAAQKVKECEKAVKK 131 (486)
Q Consensus 115 ~~~~~~~l~~~~~~l~~ 131 (486)
-.+-++.++.++..++.
T Consensus 282 ~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGE 298 (886)
T ss_pred ccccceeHHHHHHHHhh
Confidence 55556666666655554
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.01 E-value=0.98 Score=37.95 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 14 AEELKALANEAFRAK---KYSQAIDLYSQAIE-LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+..+++|.++.... +.++.+..++..++ ..|.. -+..+.||..++++++|++|+.+.+..++.+|++.++.-..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 446788888887654 56789999999997 45543 45677799999999999999999999999999998875443
No 380
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=92.65 E-value=0.22 Score=47.31 Aligned_cols=66 Identities=26% Similarity=0.249 Sum_probs=39.7
Q ss_pred ceEEEccCCCCh---------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChH-----HHHHHHHhchhcCCCeEEEec
Q 011417 223 HFTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 223 ~~~v~GDihG~~---------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~-----e~l~~l~~lk~~~p~~v~~lr 288 (486)
+++.++|+||.+ ..+..+++...-.....-++..||+++.++.+. .++..|-.+ - -.++. .
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~---g-~d~~~-~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL---G-YDAVT-I 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc---C-CCEEe-e
Confidence 378899999887 445555555432212224677899999887653 344444333 2 23333 5
Q ss_pred cCCcc
Q 011417 289 GNHES 293 (486)
Q Consensus 289 GNHE~ 293 (486)
||||.
T Consensus 77 GNHe~ 81 (252)
T cd00845 77 GNHEF 81 (252)
T ss_pred ccccc
Confidence 99995
No 381
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.65 E-value=1.4 Score=43.67 Aligned_cols=102 Identities=13% Similarity=0.122 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C-------------------------------CCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN---S-------------------------------QNAVYYANRAFAH 58 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p-------------------------------~~~~~~~~lg~~~ 58 (486)
.+...+..+..+...|+..+|+..++..++.. + ..+.++..+|...
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999888711 1 0135566667666
Q ss_pred HHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 011417 59 TKL------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF-----------------KEALKDFQQVKKLSPN 114 (486)
Q Consensus 59 ~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~~~al~~~p~ 114 (486)
... +..++++..|+++++++|....+|+..|..+...=+. ..|+..|-+++...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 7889999999999999999999999999877765222 3477888888887776
No 382
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.59 E-value=5.8 Score=38.27 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC------C----CHHHHHHHHHHHHHccCHH---HHHHHHH
Q 011417 11 VSRAEELKALANEAFRAK-KYSQAIDLYSQAIEL----NS------Q----NAVYYANRAFAHTKLEEYG---SAIQDAS 72 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p------~----~~~~~~~lg~~~~~~g~~~---~A~~~~~ 72 (486)
..-+..+++.|...+..+ ++++|+..+++|.++ .+ + ...++..++.+|...+.++ +|....+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345778999999999999 999999999999987 21 1 1456778899999888765 4444444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
.+-...|+.+..+...=.+....++.+++.+.+.+++..-+
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 55555677777764444555558999999999999998654
No 383
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=92.51 E-value=0.29 Score=49.11 Aligned_cols=69 Identities=25% Similarity=0.391 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--HHHHHHHHhchhcCC----CeEEEeccCCcccccccccCChhh
Q 011417 232 GQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCP----SAIYLSRGNHESKSMNKIYGFEGE 305 (486)
Q Consensus 232 G~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~--~e~l~~l~~lk~~~p----~~v~~lrGNHE~~~~~~~~~~~~e 305 (486)
|+-.-+.+.++..-+...++..+||||++|.|... -|--.....+|-.+| ..++.+.||||- ||..|
T Consensus 76 ~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI-------Gf~~~ 148 (410)
T KOG3662|consen 76 GNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI-------GFGNE 148 (410)
T ss_pred hhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc-------ccccc
Confidence 33344556666665655667799999999999764 333334444444444 478889999994 66655
Q ss_pred hh
Q 011417 306 VR 307 (486)
Q Consensus 306 ~~ 307 (486)
..
T Consensus 149 ~~ 150 (410)
T KOG3662|consen 149 LI 150 (410)
T ss_pred cc
Confidence 44
No 384
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.38 E-value=0.95 Score=36.72 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=65.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 011417 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGK-----------FKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (486)
+|..++..|++-+|++..+..+...+++. ..+...|.++..++. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56788999999999999999999988776 456667888877653 2468999999999999997777
Q ss_pred HHHHHHHHHHhhHHHHHhhcCcc
Q 011417 120 QKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 120 ~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.++.-+.... .|+++....+
T Consensus 82 ~~la~~l~s~~--~Ykk~v~kak 102 (111)
T PF04781_consen 82 FELASQLGSVK--YYKKAVKKAK 102 (111)
T ss_pred HHHHHHhhhHH--HHHHHHHHHH
Confidence 77776532222 2666665554
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=6.5 Score=40.24 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------- 81 (486)
..+..++.+|.....-+.|+.|...|..|.++-.. .+.+-.++|.+|.+.++-+.--+..+. +.|.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH
Confidence 35678889999999999999999999999987543 255677889999998875544333333 34442
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
..+++..|...+.++++.||.....+.++.. +..+....-+..+..++
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHH
Confidence 3467888999999999999999999999986 44443333333333333
No 386
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.24 E-value=1.5 Score=39.21 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH--H
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDPDAA--Q 120 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~--~ 120 (486)
-.++..+|.-|.+.|++++|+++|.++.+.... ..+.++.+-.+....+++.....+..+|-..-. .+++.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 467889999999999999999999998876433 245678888899999999999999999887643 333332 2
Q ss_pred HHHHHHHHHhhHHHHHhhcCcc
Q 011417 121 KVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 121 ~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.....+..+..++|.+|...+-
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHH
Confidence 3334444455556666666555
No 387
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.01 E-value=4.2 Score=41.23 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH--HHHHHHHHh---------CC--
Q 011417 14 AEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI--QDASKAIEI---------DP-- 79 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~--~~~~~al~~---------~p-- 79 (486)
+.-+..-|..+.+.|. -++|+..++.+++..|.+...-. +-. .+-...|..|+ ..+.+.+.+ .|
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n-~v~-~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECEN-IVF-LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHH-HHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 4456677788888887 78899999999988887753321 111 11111122222 112222211 11
Q ss_pred -CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 80 -RYPKGYYRR--GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 80 -~~~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+.+.-..| |.-++..|+|.++.-+-.-..+++| .+.++..+|.++. ....|.+|+.++.
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~--e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLM--ENKRYQEAWEYLQ 519 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHH--HHhhHHHHHHHHH
Confidence 223333334 3445577777777777777777777 6777777777773 3444777777654
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.97 E-value=0.87 Score=35.99 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=41.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 58 HTKLEEYGSAIQDASKAIEIDPR---------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
..+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++|+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34667777776666666554221 2456788999999999999999999999988643
No 389
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=1.5 Score=41.86 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (486)
...-..-+......|++.+|...+..++...|++.++...++.+|...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344455566788999999999999999999999999999999999999999777665543
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.82 E-value=0.89 Score=35.91 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (486)
...+.|+|.+|++.+.+....... ...+..++|.++...|++++|+..+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999988888765322 24678889999999999999999999999874
No 391
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=2.2 Score=42.69 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=85.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C---HHHH
Q 011417 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-K---FKEA 101 (486)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~---~~~A 101 (486)
.-.++-+.+...+++.+|+...+|..+..++.+.+. +..-++.++++++.||.+-.+|...-.+..... . ..+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 356777888999999999999999999999998774 688999999999999999888876655444333 2 5778
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+++..+++.-++.|-.+|.+...++..+-.
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~ 198 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHP 198 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence 889999999999999999988888765443
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.58 E-value=2.4 Score=42.62 Aligned_cols=102 Identities=13% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHHH
Q 011417 40 AIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--------------DP------------RY---PKGYYRRGA 90 (486)
Q Consensus 40 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~lg~ 90 (486)
.++.+|-..+++..++.++.++|++..|.+..++|+-. ++ .| -.+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999999998621 11 12 135677778
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+.+.|.+..|.++.+-.+.++|. ||-.....-..+. +..+.++--+...+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~A-Lrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYA-LRSRQYQWLIDFSE 163 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHH-HhcCCHHHHHHHHH
Confidence 888999999999999999999998 7754443333332 33333444444443
No 393
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=3.8 Score=41.86 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC---CCC--
Q 011417 13 RAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQN---AVYYANRAFAH-TKLEEYGSAIQDASKAIEID---PRY-- 81 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~---p~~-- 81 (486)
-+.++..+|..+...+ +...++++++..+...|.+ +.....+|.++ ....+++.|..++++|..+- |..
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567788888888888 8899999999988877765 44556667665 46788999999999998764 332
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhhHHHHHhhcCcccc
Q 011417 82 --PKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPD----AAQKVKECEKAVKKLKFEEAIAVPESE 144 (486)
Q Consensus 82 --~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~l~~~~~~~A~~~~~~~ 144 (486)
-+++..|+.+|.... .+..|...+++|+++..+.|- ..+.++.+... +.++.-|++..+.|
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i--dkD~~sA~elLavg 153 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII--DKDFPSALELLAVG 153 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh--hccchhHHHHHhcc
Confidence 346778888888777 778889999999999877763 34445555432 33467777665533
No 394
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.44 E-value=0.83 Score=49.06 Aligned_cols=115 Identities=33% Similarity=0.468 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAFAHTKL--EEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
..+......++..++.++|..|..-|..++.+-|. .+....+.+.+|+++ ++|.+++...+-++...|....++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L 130 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL 130 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence 34556778899999999999999999999988874 366677888888765 689999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
...+.+|..++..+-|++...-....+|++.++.......+
T Consensus 131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 99999999999999999998888888999966555444433
No 395
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.39 E-value=1.1 Score=42.81 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
+..=+....++++ .....++..++..+...++++.+...+++.+..+|-+-..|..+-.+|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~--e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALE--ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 6665665565554 34577889999999999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 011417 110 KLS 112 (486)
Q Consensus 110 ~~~ 112 (486)
+..
T Consensus 215 ~~~ 217 (280)
T COG3629 215 KTL 217 (280)
T ss_pred HHh
Confidence 753
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.22 E-value=3.4 Score=35.46 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
...+...-....+.+++...+...--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+-....++.|+..++
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444455568899999999998888999999999999999999999999999999999888888888888999998887
Q ss_pred hHHH
Q 011417 131 KLKF 134 (486)
Q Consensus 131 ~~~~ 134 (486)
.-.+
T Consensus 93 Dp~W 96 (153)
T TIGR02561 93 DAEW 96 (153)
T ss_pred ChHH
Confidence 6543
No 397
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.17 E-value=2.5 Score=34.74 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-------LNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
..+--++-.+..++..+...|+|++++..-.++|. ++.+.- .+-+++|.++..+|+.++|+..|+.+-+
T Consensus 49 Dh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 49 DHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33334566677889999999999999999888885 344443 4457789999999999999999999876
Q ss_pred h
Q 011417 77 I 77 (486)
Q Consensus 77 ~ 77 (486)
.
T Consensus 129 M 129 (144)
T PF12968_consen 129 M 129 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 398
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.05 E-value=3 Score=44.57 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 16 ELKALANEAFRA----K-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 16 ~~~~~g~~~~~~----g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
+.+.+|..|++. . +++.|+.+|.++-+.. ++.+.+.+|.++.... ++..|.++|..|.. -.+..+.+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHH
Confidence 466788888874 3 7889999999997754 4567788888887665 57899999999976 478899999
Q ss_pred HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 88 RGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 88 lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+|.+|..- -+...|..+|.++.+.. ++.+.+.++..+
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~ 406 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY 406 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence 99998754 46789999999999887 666666666655
No 399
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.04 E-value=0.83 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 011417 84 GYYRRGAAYLAMGKFKEALKD--FQQVKKLSPN 114 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~ 114 (486)
.++.+|..+...|++++|+.. |+-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 445555555555555555555 2244444443
No 400
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.92 E-value=1.2 Score=45.24 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=91.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEA 101 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 101 (486)
......|+.-.|-.-...+++..|.++..-...+.+...+|.|+.|.+...-+-..-.....+...+-.....+|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34566799999999999999999999999999999999999999999988766555455556666666778899999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 102 LKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 102 ~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..-+-.+.-.-++++....-+..-.+++- ++++....+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~--~d~~~~~wk 415 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQL--FDKSYHYWK 415 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhH--HHHHHHHHH
Confidence 998888887666777765444444444444 566666555
No 401
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.81 E-value=0.85 Score=43.76 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (486)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (486)
|..+|.+|+.+.|++...|+.+|.++...|+.=+|+-+|-|++-..-..+.+..++......
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777775544456666666665533
No 402
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.78 E-value=2.1 Score=43.25 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=40.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (486)
...-|..++.+|+|.++.-+-.-..+++| ++.++..+|.|++...+|++|..++..
T Consensus 465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44455566677777777777777777777 577777777777777777777777654
No 403
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=90.58 E-value=0.46 Score=45.78 Aligned_cols=71 Identities=23% Similarity=0.185 Sum_probs=39.0
Q ss_pred ceEEEccCCCCh----HHHHHHHHHcCCCCCCCCeEEccccc-CCCCChH------HHHHHHHhchhcCCCeEEEeccCC
Q 011417 223 HFTVCGDVHGQF----YDLLNIFELNGLPSEENPYLFNGDFV-DRGSFSV------EVILTLFAFKCMCPSAIYLSRGNH 291 (486)
Q Consensus 223 ~~~v~GDihG~~----~~l~~~l~~~~~~~~~~~~~~lGd~v-drG~~~~------e~l~~l~~lk~~~p~~v~~lrGNH 291 (486)
+++++||.-... .++.+.+.........+-+|++||+| +-|..+. +.+.-++.. +...--++.+.|||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~GNH 80 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLGNH 80 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecCCc
Confidence 378899976531 23444333221112345689999987 5554221 223333221 11234689999999
Q ss_pred ccc
Q 011417 292 ESK 294 (486)
Q Consensus 292 E~~ 294 (486)
|..
T Consensus 81 D~~ 83 (277)
T cd07378 81 DYS 83 (277)
T ss_pred ccC
Confidence 976
No 404
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.52 E-value=2.6 Score=31.86 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG---AAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~ 110 (486)
-....|.-++...+.++|+..++++++..++....+..+| .+|...|+|++++++--+=+.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888999999999999999888776665554 678888999988877554443
No 405
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.43 E-value=1.6 Score=41.91 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccc
Q 011417 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (486)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~ 143 (486)
|.+-+....++++. ....++..++..+...|+++.+.+.+++.+..+|-+..++..+..++...+. ...|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~--~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR--QSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--chHHHHHHHH
Confidence 55666666665543 4567888888888899999999999999999999888888888888866665 5777776664
No 406
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=1.9 Score=45.39 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (486)
.++.+-|.-.++..+|..|+++|+..+..-|. .++....++.||..+.+.+.|.++++.|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34566788889999999999999999986554 456788899999999999999999999999999998766555
Q ss_pred HHHHHHHhhHHHHHhhc
Q 011417 123 KECEKAVKKLKFEEAIA 139 (486)
Q Consensus 123 ~~~~~~l~~~~~~~A~~ 139 (486)
..+... .+.-++|+.
T Consensus 435 ~~~~~~--E~~Se~AL~ 449 (872)
T KOG4814|consen 435 LQSFLA--EDKSEEALT 449 (872)
T ss_pred HHHHHH--hcchHHHHH
Confidence 554422 222455554
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.30 E-value=1 Score=28.54 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q 011417 16 ELKALANEAFRAKKYSQAIDL--YSQAIELNS 45 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p 45 (486)
.++.+|..++.+|++++|+.. |.-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344455555555555555555 224444443
No 408
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.24 E-value=0.59 Score=30.08 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
++|..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46777888888888888888888888765
No 409
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.24 E-value=3.8 Score=37.85 Aligned_cols=70 Identities=19% Similarity=0.093 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 11 VSRAEELKALANEAFRAKKYS-------QAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~-------~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
...+..+..+|..|...++-+ .|++.|.+|++... +...+.+.+|..+.+.|++++|+.+|.+++..
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 356778888999998888844 55566666665432 23678899999999999999999999999986
Q ss_pred CCC
Q 011417 78 DPR 80 (486)
Q Consensus 78 ~p~ 80 (486)
...
T Consensus 195 ~~~ 197 (214)
T PF09986_consen 195 KKA 197 (214)
T ss_pred CCC
Confidence 433
No 410
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.95 E-value=1 Score=43.11 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
|..+|.+|+.+.|++...|..+|.++...|+.=.|+-+|-|++......+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998777778889999888877
No 411
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=89.68 E-value=0.84 Score=46.47 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhch-hcC--CCeEEEeccCCcccccc
Q 011417 250 ENPYLFNGDFVDRGSFSVEVILTLFAFK-CMC--PSAIYLSRGNHESKSMN 297 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~~l~~lk-~~~--p~~v~~lrGNHE~~~~~ 297 (486)
.+.+|+-||+.|++.-|.+++..+...- ... .--||++.||||...-.
T Consensus 41 vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~ 91 (390)
T COG0420 41 VDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRL 91 (390)
T ss_pred CCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhcc
Confidence 3668999999999988888887765432 111 24799999999986543
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.64 E-value=4.1 Score=40.93 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------------N------------SQN---AVYYANRAFAH 58 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~lg~~~ 58 (486)
...|-+++++.+++.++..+|+++.|.+..++||-. + +.| ..+.+.....+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 356677889999999999999999999999999731 1 112 24455567788
Q ss_pred HHccCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 59 TKLEEYGSAIQDASKAIEIDPR-YPKGY-YRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~-~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
.+.|-+..|.++++-.+.+||. ++-+- +.+=....+.++|+=-+..++....
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8999999999999999999999 76553 3444455577888767777665544
No 413
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.61 E-value=0.56 Score=44.91 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=69.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN-RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
..-+.++..|...+....+.+-|.+--..|.+++..+|.+++.|.. -+.-+.-.++++.+.+.+.+++.++|+++..|.
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3345667788888888888999999999999999999999999986 455677889999999999999999999998876
Q ss_pred HH
Q 011417 87 RR 88 (486)
Q Consensus 87 ~l 88 (486)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 54
No 414
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=4.2 Score=38.31 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=80.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 28 KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG-SAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
.+..+-++++++.++.+|.+..+|..+-.+....|+.. .-++..++++..+..+.-+|...-.+....+.++.-+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 45677788899999999999999999989888889887 78889999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHH
Q 011417 107 QVKKLSPNDPDAA 119 (486)
Q Consensus 107 ~al~~~p~~~~~~ 119 (486)
+.++.+--|-.||
T Consensus 172 ~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 172 ELLEEDIRNNSAW 184 (318)
T ss_pred HHHHHhhhccchh
Confidence 8888876666665
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.32 E-value=2.4 Score=43.34 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
+..|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+.-+. .+.|.+.+.+++..+|+++..|...
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 44555555555566669999999999999999999999999888877776 9999999999999999999876543
No 416
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.30 E-value=0.69 Score=29.77 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
.+..+|.+.+..++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 417
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=3.1 Score=43.46 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=80.1
Q ss_pred ccCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011417 27 AKKYSQ-AIDLYSQAIELNSQNAVYYAN--RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALK 103 (486)
Q Consensus 27 ~g~~~~-A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 103 (486)
.+..+. |+..+...+.++|.++..... +...+...+....|......++..+|++..++.+||.+....|..-.+..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHH
Confidence 334443 777777778888888777443 57788888999999999999999999999999999988888877766666
Q ss_pred HHHH-HHHhCCCCHHHHHHHHHHHH
Q 011417 104 DFQQ-VKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 104 ~~~~-al~~~p~~~~~~~~l~~~~~ 127 (486)
.+.. +....|++..+...+-.++.
T Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 123 DISEIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHHHHHHhcCcchHHHHhhHHHHHH
Confidence 6555 89999999988877755544
No 418
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.23 E-value=4.7 Score=42.95 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+...-+++.+.|..+.....|++|.++|.+.- ..-++..|++++..|++-... ...-|++.+.+-.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGELEVL----ARTLPEDSELLPVM 858 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhHHHH----HHhcCcccchHHHH
Confidence 344556778888888888888888888887642 234566777777777665433 33458888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~a 108 (486)
|.++...|.-++|.++|-+.
T Consensus 859 a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhc
Confidence 99999999999999888543
No 419
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.63 E-value=13 Score=35.74 Aligned_cols=124 Identities=20% Similarity=0.142 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHH
Q 011417 15 EELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRY-PKGY 85 (486)
Q Consensus 15 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~ 85 (486)
.+...+|..|.. ..+..+|+..|+.+ .....+.+.+++|..|.. ..++.+|..+|++|.+..-.. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 355566666553 34678888888844 345667788888888877 448888888888888764333 3447
Q ss_pred HHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-h-hHHHHHhhcCcc
Q 011417 86 YRRGAAYLAMG-------KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV-K-KLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l-~-~~~~~~A~~~~~ 142 (486)
+.+|.+|..-. +...|...|.++.... ++.+...++.++..= + ..+..+|..++.
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~ 215 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK 215 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence 77887777641 2236888888887765 667777777665221 0 113455555544
No 420
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.58 E-value=10 Score=36.51 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=75.0
Q ss_pred HHHccCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---CC------
Q 011417 24 AFRAKKYSQAIDLYSQAIELN----SQN----AVYYANRAFAHTKLE-EYGSAIQDASKAIEI----DP---RY------ 81 (486)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~~------ 81 (486)
..+.|+.+.|..++.++-... |+. +..+++.|......+ ++++|..++++|.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986654 332 566888999999999 999999999999987 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 82 -PKGYYRRGAAYLAMGKFK---EALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 82 -~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
..++..++.+|...+.++ +|....+.+-...|+.+..+...-.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il 131 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL 131 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 246788899999888765 455555556566688777664433333
No 421
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.39 E-value=1.4 Score=45.25 Aligned_cols=81 Identities=22% Similarity=0.195 Sum_probs=69.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Q 011417 60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM---GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE 136 (486)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~ 136 (486)
..+....|+..|.+++..-|.....+.+.+.++.+. |+.-.|+.....|++++|....+++.|+.++..+++ +.+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r--~~e 463 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR--YLE 463 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh--HHH
Confidence 344567899999999999999999999998888754 566789999999999999999999999999988887 788
Q ss_pred hhcCcc
Q 011417 137 AIAVPE 142 (486)
Q Consensus 137 A~~~~~ 142 (486)
|+....
T Consensus 464 al~~~~ 469 (758)
T KOG1310|consen 464 ALSCHW 469 (758)
T ss_pred hhhhHH
Confidence 887655
No 422
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.27 E-value=0.72 Score=26.72 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 011417 84 GYYRRGAAYLAMGKFKEALKDF 105 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~ 105 (486)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 423
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.21 E-value=17 Score=32.30 Aligned_cols=57 Identities=9% Similarity=0.010 Sum_probs=31.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
+.-+..+.+.+..++|+..|...-+-.-.. ..+....|.+..+.|+...|+..|..+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 444555555666666666666554433222 233444555566666666666666554
No 424
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.20 E-value=6.8 Score=42.68 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKA----------IEIDP----------RYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (486)
-..|++.|.-+...++.+.|+++|+|+ +.-+| .+...|.--|.-+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 356888999999999999999999986 22333 2445667778888899999999999988
Q ss_pred HHHh---------------------CCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 108 VKKL---------------------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 108 al~~---------------------~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|-.. ...|..+.+.++..|...+. ..+|+..+.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--v~~Av~FfT 991 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--VVKAVKFFT 991 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--HHHHHHHHH
Confidence 7544 24566678888888854444 667766554
No 425
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.00 E-value=2.1 Score=36.64 Aligned_cols=46 Identities=22% Similarity=0.163 Sum_probs=21.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 62 (486)
....|...+..|+|+.|.+..+.++..+|++..+...++.++.++|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555554444444
No 426
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.44 E-value=0.73 Score=26.71 Aligned_cols=23 Identities=13% Similarity=-0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDAS 72 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~ 72 (486)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 427
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.22 E-value=6.9 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhhHHHHHhh
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN----DPDAAQKVKECEKAVKKLKFEEAI 138 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~l~~~~~~~A~ 138 (486)
+++..+.||..|. ..+.++|+..+.+++++.+. |++....|+.++...++ +++|.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~--~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN--YEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--hhhhh
Confidence 4455555554433 44555666666666655433 24555555555544444 44443
No 428
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.04 E-value=7.7 Score=47.04 Aligned_cols=118 Identities=16% Similarity=0.040 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------- 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------- 81 (486)
.....+.|.+.|......|.++.|-.++-+|.+.. -+.++..+|..+.+.|+-..|+..+++.++.+-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 45567889999999999999999999999988766 57899999999999999999999999999764221
Q ss_pred ---------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 82 ---------PKGYYRRGAAYLAMGKF--KEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 82 ---------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
..+.+.++.-....++. .+-++.|..|.+..|+..+-++.+|.-+.++
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 12344444444445554 4567889999999998888888888655443
No 429
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.02 E-value=0.95 Score=45.87 Aligned_cols=108 Identities=12% Similarity=0.043 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+......+.++...|+|+.|...+..+-..-.....+...+-.....++++++|....+-.+.-.-++++....-|..-.
T Consensus 323 p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~ 402 (831)
T PRK15180 323 PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSAD 402 (831)
T ss_pred chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHH
Confidence 34455677888889999999998887776666666666777788889999999999998888877778888777777888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
.+|-+++|+-++++.+.++|.....+.+
T Consensus 403 ~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 403 ALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHhHHHHHHHHHHHHhccCChhccccee
Confidence 8999999999999999999876544433
No 430
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.99 E-value=3.6 Score=46.88 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---- 77 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 77 (486)
.|+.+..+..++..+.+.+++++|+..-.+|.-+ .|+....|.+++...+..++...|+..+.++..+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 5677888999999999999999999988877643 3667888999999999999999999999998875
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 78 ----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 78 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
.|.-...-.+++.++..+++++.|+++.+.|++.+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555566788999999999999999999999864
No 431
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=86.74 E-value=0.99 Score=43.53 Aligned_cols=20 Identities=5% Similarity=0.350 Sum_probs=14.9
Q ss_pred HHHHHHH-CCCCceeeeccccc
Q 011417 398 TKRFLQD-NSLGNLVVRSHEVK 418 (486)
Q Consensus 398 ~~~~l~~-~~~~~~iir~H~~~ 418 (486)
..++++. -++ ++||-||+-.
T Consensus 209 ~~~la~~~~~v-D~IlgGHsH~ 229 (277)
T cd07410 209 AYELAEEVPGI-DAILTGHQHR 229 (277)
T ss_pred HHHHHhcCCCC-cEEEeCCCcc
Confidence 4455665 588 9999999964
No 432
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.61 E-value=18 Score=36.26 Aligned_cols=117 Identities=14% Similarity=0.031 Sum_probs=66.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHHHH-cCCH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPRYP---KGYYRRGAAYLA-MGKF 98 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~---~~~~~lg~~~~~-~g~~ 98 (486)
+.|+.+.|..+-..+-+..|.-+.++...-......|+++.|++..+...+. .++-. .+-..-+.+... ..+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 4566777777777777777777777776666677777777777776655432 12211 111122222211 1245
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccc
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESE 144 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~ 144 (486)
..|...-.+++++.|+...+-..-+..+. .+++..++-...+..
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf--~d~~~rKg~~ilE~a 289 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALF--RDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHH--hccchhhhhhHHHHH
Confidence 56666667777777777666555555553 333355555555543
No 433
>PLN02533 probable purple acid phosphatase
Probab=86.39 E-value=1.1 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCceeeeccccc
Q 011417 395 ADVTKRFLQDNSLGNLVVRSHEVK 418 (486)
Q Consensus 395 ~~~~~~~l~~~~~~~~iir~H~~~ 418 (486)
.+.++..+.++++ ++++-||.-.
T Consensus 311 r~~le~Ll~~~~V-dlvlsGH~H~ 333 (427)
T PLN02533 311 KESMETLLYKARV-DLVFAGHVHA 333 (427)
T ss_pred HHHHHHHHHHhCC-cEEEecceec
Confidence 4578889999999 9999999964
No 434
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=86.33 E-value=1 Score=41.35 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=42.2
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHH--------------------------HHHHhc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI--------------------------LTLFAF 276 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l--------------------------~~l~~l 276 (486)
++..+.|.||+++-+.++.+...-. ..+-++|+||++-.+..+-|-. .++..|
T Consensus 7 kilA~s~~~g~~e~l~~l~~~~~e~-~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 7 KILAISNFRGDFELLERLVEVIPEK-GPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHH-T-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeecCcchHHHHHHHHHhhcccc-CCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 5889999999999999988764221 2456999999996655554444 333333
Q ss_pred hhcCCCeEEEeccCCcccc
Q 011417 277 KCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 277 k~~~p~~v~~lrGNHE~~~ 295 (486)
-..+--+++++||||...
T Consensus 86 -~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 86 -GELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp -HCC-SEEEEE--TTS-SH
T ss_pred -HhcCCcEEEecCCCCchH
Confidence 345678889999999753
No 435
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.27 E-value=29 Score=36.54 Aligned_cols=129 Identities=10% Similarity=0.066 Sum_probs=104.7
Q ss_pred CcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Q 011417 3 NMETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRY 81 (486)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 81 (486)
+.....-++.+-..|..........|+++...-.|++++--.....+.|...+.-....|+.+-|-..+.++.+.. |+.
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 3344445566677788888888899999999999999999999999999999999999999999998888888764 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+..+..-+..-...|++..|...+++..+--|...++-..........+.
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGN 415 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence 66777777888889999999999999998888887765555555544444
No 436
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.96 E-value=25 Score=38.88 Aligned_cols=101 Identities=18% Similarity=0.043 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (486)
++.-....|......+++.+|.....++...-+. .+......|.+....|+.++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455667788888999999999998888765433 24556667888999999999999999999987764
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
..++..+|.+..-.|++++|..+.+++.+..-
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999988843
No 437
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.79 E-value=18 Score=40.62 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
+.+..|.++|.+..+.+...+|++.|-+| +++..|...-.+..+.|.|++-+.++.-|-+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45678999999999999999999999765 7788888888888899999988888877654
No 438
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.37 E-value=3.7 Score=37.22 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=60.0
Q ss_pred HHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCH
Q 011417 25 FRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~ 98 (486)
...-.-++|...|-++- -.| ++++..+.||..|. ..+.++|+..+-+++++.+. +++.+..|+.++..++++
T Consensus 117 Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34445567777776543 233 46888888887776 77889999999999998544 589999999999999999
Q ss_pred HHHHH
Q 011417 99 KEALK 103 (486)
Q Consensus 99 ~~A~~ 103 (486)
+.|.-
T Consensus 195 e~AYi 199 (203)
T PF11207_consen 195 EQAYI 199 (203)
T ss_pred hhhhh
Confidence 99863
No 439
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.31 E-value=5.5 Score=29.93 Aligned_cols=32 Identities=28% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
+.+..+...|..+-+.|++++|+.+|+++++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34667788888888999999888888887753
No 440
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=19 Score=36.13 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=82.5
Q ss_pred HccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 26 RAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKL------------EEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 26 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
..|.| +++++.=.+.+..+|+...+|..+=.++... .-.++-+.....+++.+|++.-+|+.+..++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34555 4588888888899999988887765554332 2456777888889999999999999999999
Q ss_pred HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 93 LAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 93 ~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.+.+. +..-++.++++++.+|.+-.+|...-.+.....
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 97764 588899999999999999888877766654433
No 441
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=0.53 Score=45.94 Aligned_cols=85 Identities=16% Similarity=0.059 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
.....+.+..-++.+.+..|+..-..+++.+++...+++.++..+..+.++++|++.++.+....|++......+..+-.
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 33455677888889999999999999999999999999999999999999999999999999999999887766666555
Q ss_pred HcCCH
Q 011417 94 AMGKF 98 (486)
Q Consensus 94 ~~g~~ 98 (486)
...++
T Consensus 355 ~~~~~ 359 (372)
T KOG0546|consen 355 KKKQY 359 (372)
T ss_pred HHHHH
Confidence 55544
No 442
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=84.86 E-value=4.2 Score=40.82 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=64.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 55 AFAHTKLEEYGSAIQDASKAIEID--------PR-----YP-----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~--------p~-----~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
|...+++++|..|..-|..|+++- |. +. ..--.|..||..+++.+-|+..-.+.+.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 455667777777777777777652 11 11 1245678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhcC
Q 011417 117 DAAQKVKECEKAVKKLKFEEAIAV 140 (486)
Q Consensus 117 ~~~~~l~~~~~~l~~~~~~~A~~~ 140 (486)
.-+...+.+.+.+.+ |.+|...
T Consensus 263 rnHLrqAavfR~LeR--y~eAarS 284 (569)
T PF15015_consen 263 RNHLRQAAVFRRLER--YSEAARS 284 (569)
T ss_pred hHHHHHHHHHHHHHH--HHHHHHH
Confidence 999999999988888 6666543
No 443
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.83 E-value=4.4 Score=46.27 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE--------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----- 78 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 78 (486)
..+......|......+.+.+|.+ .-+++. +.|+.+..|..++..+.+++++++|+....+|.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 556667888888888899998888 444443 468889999999999999999999999998886442
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 79 ---PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-----PND---PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 79 ---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|+....|-+++...+..++...|+..+.++..+. |++ .....++..++. +-.+++.|+.+.+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~--~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL--GVEEADTALRYLE 1081 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh--hHHHHHHHHHHHH
Confidence 4567788999999999999999999999998873 333 334456666653 3344788887777
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.42 E-value=7.1 Score=38.10 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
+|..-..+|+....+.|+ +.+-.|++.+..+..-...++...+..... -.++...+-..|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 566666667666666665 666778888887777778888887776654 22345566778999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 011417 107 QVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 107 ~al~~~p~~~~~~~~l~~~ 125 (486)
+|+.+.++..+..+.....
T Consensus 390 rAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 390 RAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHhcCChHHHHHHHHHH
Confidence 9999999988876555443
No 445
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=36 Score=35.80 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=82.9
Q ss_pred ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Q 011417 27 AKKYSQAIDLYSQAIEL------------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----------------- 77 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------- 77 (486)
...|++|...|.-|... .|-........|.+...+|+.+-|....+++|-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45688888888888765 3556778889999999999999888888887621
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 78 ----DPRYPK---GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 78 ----~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.|.|-. +.+..-..+.+.|.+..|.++++-.++++|. +|-+...+-..+... ..+|.--+.+++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr-areYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR-AREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 123322 3344455667889999999999999999998 887766666665433 334666665555
No 446
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=83.59 E-value=1.4 Score=43.08 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=47.0
Q ss_pred ceEEEccCCCChHHHHHHHH---HcCCCCCCCCeEEcccccC-CCC---Ch---------HHHHHHHHhchhcCCCeEEE
Q 011417 223 HFTVCGDVHGQFYDLLNIFE---LNGLPSEENPYLFNGDFVD-RGS---FS---------VEVILTLFAFKCMCPSAIYL 286 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~---~~~~~~~~~~~~~lGd~vd-rG~---~~---------~e~l~~l~~lk~~~p~~v~~ 286 (486)
++.|-|-.||.++.+-+-+. +.|- ...+-++++||+=. |-. ++ +..+.--++-.+..|=-.++
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~-tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGN-TKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCC-CCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 58899999999999885443 3332 23556899999841 111 11 22223333444777887888
Q ss_pred eccCCccccc
Q 011417 287 SRGNHESKSM 296 (486)
Q Consensus 287 lrGNHE~~~~ 296 (486)
+-||||.+.-
T Consensus 81 IGGNHEAsny 90 (456)
T KOG2863|consen 81 IGGNHEASNY 90 (456)
T ss_pred ecCchHHHHH
Confidence 9999998643
No 447
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.50 E-value=1.4 Score=42.80 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=37.8
Q ss_pred eEEEccCCCChHH--------------HHHHHHHcCCCCCCCCeEEcccccCCCCC-h-----HHHHHHHHhchhcCCCe
Q 011417 224 FTVCGDVHGQFYD--------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-S-----VEVILTLFAFKCMCPSA 283 (486)
Q Consensus 224 ~~v~GDihG~~~~--------------l~~~l~~~~~~~~~~~~~~lGd~vdrG~~-~-----~e~l~~l~~lk~~~p~~ 283 (486)
++...|+||++.. +..+++.........-++..||++...+. + ..++..+-++. -.
T Consensus 3 il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g----~D 78 (288)
T cd07412 3 ILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMG----VD 78 (288)
T ss_pred EEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhC----Ce
Confidence 6778899987553 45555554322223346778999976554 2 13444444443 23
Q ss_pred EEEeccCCcc
Q 011417 284 IYLSRGNHES 293 (486)
Q Consensus 284 v~~lrGNHE~ 293 (486)
+. ..||||.
T Consensus 79 a~-t~GNHef 87 (288)
T cd07412 79 AS-AVGNHEF 87 (288)
T ss_pred ee-eeccccc
Confidence 33 3499994
No 448
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.49 E-value=44 Score=36.27 Aligned_cols=110 Identities=21% Similarity=0.113 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 011417 9 SSVSRAEELKALANEAF-RAKKYSQAIDLYSQAIELNSQ--NA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPR- 80 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 80 (486)
....++.+.+.+|..++ ...+++.|..++.+++.+... .. .+.+.++.++.+.+... |...++++++.-..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 34466888999999998 689999999999999888743 32 33556788888888776 99999999986544
Q ss_pred ---CHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH
Q 011417 81 ---YPKGYYRRG--AAYLAMGKFKEALKDFQQVKKLS--PNDPDAA 119 (486)
Q Consensus 81 ---~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 119 (486)
.....+.+- ..+...+++..|++.++...... +.++.+.
T Consensus 133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 223333332 22323379999999999998876 3555543
No 449
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=83.41 E-value=2.5 Score=42.61 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCCc----eeeecccccccCceE---ecCCeEEEEec--CCCCCCCCCCeEEEEEE
Q 011417 395 ADVTKRFLQDNSLGN----LVVRSHEVKDEGYEI---EHDGKLITVFS--APNYCDQMGNKGAFIRF 452 (486)
Q Consensus 395 ~~~~~~~l~~~~~~~----~iir~H~~~~~G~~~---~~~~~~~tifs--a~~y~~~~~n~~a~~~~ 452 (486)
++.+.+.|+..|| + .||-||+++.++=.- -.|||+|-|-- |-.|....+=.|=.|+.
T Consensus 515 e~ic~kil~eFGL-dpe~ghiINGHtPVke~~GE~PIKAngKliVIDGGFskAYqs~TgiAGYTllY 580 (648)
T COG3855 515 EEICRKILEEFGL-DPEGGHIINGHTPVKEKNGENPIKANGKLIVIDGGFSKAYQSTTGIAGYTLLY 580 (648)
T ss_pred HHHHHHHHHHhCC-CcccCceecCCCcccccCCCCCccCCCeEEEEcCchhhhhhcccccceeEeee
Confidence 5678899999999 6 899999999665432 24899998852 23365544444444444
No 450
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=83.24 E-value=25 Score=35.19 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=73.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 011417 21 ANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-KGYYRRGAAYLAMGK 97 (486)
Q Consensus 21 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~ 97 (486)
|.+....|+-..|.++-+++-++-..+ +.++..-+++-.-.|+++.|.+-|+..+. +|+.- -.+..|-.--..+|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence 444445667777777777766443333 33344446666777888888888876554 34432 223334444556788
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 98 FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++-|+.+-+++....|.-+-++....... ...++++.|+.+..
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r--~~~gdWd~AlkLvd 212 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEAR--CAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHH--HhcCChHHHHHHHH
Confidence 88888888888888887776655544444 33444677776665
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.03 E-value=5.2 Score=40.55 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=61.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELN---------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
+..+.+.+.-.|||..|++.++.. +++ +-....++..|-+|+.+++|.+|+..|...+..-.+.-..+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 345566777889999999987653 332 2346778999999999999999999999987532111101111
Q ss_pred HH-HHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 88 RG-AAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 88 lg-~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
.. .--.-.+..++....+.-++.+.|.
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11 1111123445666666667777775
No 452
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.01 E-value=8 Score=29.08 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
+|++.+.+++...|+++........+...+
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 344445555555677766544444444333
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.93 E-value=5.5 Score=38.12 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 54 RAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 54 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
.+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--+|.+.|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3455666666666666666666666666666666666666666666666666554
No 454
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.70 E-value=4.9 Score=38.45 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
+...+..|...|.+.+|+++.++++.++|-+...+..+-.++..+|+--+|...|++--
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45667788899999999999999999999999999999999999999888888887643
No 455
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=82.17 E-value=7.6 Score=40.30 Aligned_cols=103 Identities=10% Similarity=-0.002 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY- 85 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~- 85 (486)
..++|.+..+|+.+-..+-.+ .++++.+.|++.+...|..+.+|.......+..++|+.....|.+.+..-= +.+.|
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~ 90 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWK 90 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHH
Confidence 456788888999888877666 999999999999999999999999999999999999999999988876422 23444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
..+..+-...++...+....-+|.++
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f 116 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDF 116 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHH
Confidence 33445555566555544444444433
No 456
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=81.75 E-value=2.6 Score=40.18 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred eEEEccCCCChH----------HHHHHHHHcCCCCCCCCeEEcccccCCCCChH-----HHHHHHHhchhcCCCeEEEec
Q 011417 224 FTVCGDVHGQFY----------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 224 ~~v~GDihG~~~----------~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~-----e~l~~l~~lk~~~p~~v~~lr 288 (486)
++...|+||++. .+..+++...-. ...-++..||.++..+.+. .++..+-.+ +-.+. ..
T Consensus 3 il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~----g~d~~-~~ 76 (257)
T cd07408 3 ILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAV----GYDAV-TP 76 (257)
T ss_pred EEEeccCcccccCCCCccccHHHHHHHHHHHHhc-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhc----CCcEE-cc
Confidence 677889999753 344455543322 2344777899998655432 233333232 22343 35
Q ss_pred cCCcc
Q 011417 289 GNHES 293 (486)
Q Consensus 289 GNHE~ 293 (486)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99994
No 457
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.17 E-value=33 Score=33.56 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------------
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID------------------- 78 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------- 78 (486)
+..-....+..+..+-++.-.+|++++|..+.+|..+|.--. --..+|...+++|++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 334445566778888888899999999999999998875432 22445666666665321
Q ss_pred ----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 79 ----PRYPK--GYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 79 ----p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
..+.. .-.+||.|-.++|+..+|++.++...+--|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11222 245689999999999999999998887766
No 458
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.60 E-value=30 Score=34.99 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHH--HHHHccCHHHHHHHHHHHHHhC
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNA--VYYANRAF--AHTKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~--~~~~~g~~~~A~~~~~~al~~~ 78 (486)
-....+..+++.++|..|...+......-|... ..+..++. -+...-++++|.+.+++.+...
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 556788899999999999999999988533333 34555544 4567889999999999988753
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.31 E-value=2.7 Score=42.56 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEI---------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
+...|..++.-+|+|..|++.++.. ++ .+.+...+|..|.+|..+++|.+|++.|...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888999999999988763 22 2335677999999999999999999999988754
No 460
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=79.86 E-value=19 Score=37.53 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=66.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 38 SQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 38 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
++-|+.+|.+..+|+.|-.-+..+ .++++...|++.+...|..+.+|...........+|+.-.+.|.++|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 677899999999999997766555 9999999999999999999999999999999999999999999999864
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.84 E-value=18 Score=34.22 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCC
Q 011417 30 YSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGK 97 (486)
Q Consensus 30 ~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~ 97 (486)
-...++++.+|++.... .......+|..|+..|++++|+..++.+...... .......+..|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666664332 2445667788888888888888888888654221 23456667777888888
Q ss_pred HHHHHHHHHHH
Q 011417 98 FKEALKDFQQV 108 (486)
Q Consensus 98 ~~~A~~~~~~a 108 (486)
.++.+.+.-+.
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 77776665443
No 462
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.82 E-value=4.9 Score=23.80 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 28 KKYSQAIDLYSQAIELNSQNAVYYANRAF 56 (486)
Q Consensus 28 g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 56 (486)
|+.+.|...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666665543
No 463
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.01 E-value=14 Score=37.03 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEID--------PRYPK 83 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 83 (486)
.++..+|..|+..|+.+.|++.|.++-.-.... ...|.++-.+-..+|+|..-...-.+|.+.. .-.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456667777777777777777777744433322 3445666666666666666655555554431 00122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
..+.-|.+...+++|..|.++|-.+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555556666666665443
No 464
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=78.70 E-value=5 Score=39.01 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=40.6
Q ss_pred EEccCCCC--hHHHHHHHHHcC-CCCCCCCeEEcccccCCCCChH--H------HHHHHHhchhcCC-CeEEEeccCCcc
Q 011417 226 VCGDVHGQ--FYDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV--E------VILTLFAFKCMCP-SAIYLSRGNHES 293 (486)
Q Consensus 226 v~GDihG~--~~~l~~~l~~~~-~~~~~~~~~~lGd~vdrG~~~~--e------~l~~l~~lk~~~p-~~v~~lrGNHE~ 293 (486)
-.|+..+. ...+...++... ..+..+-+++.||+|+.+.... + .-.+.-.++..+| --|+...||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 34554432 344455554432 2134566899999998876431 1 1222333444444 379999999997
Q ss_pred cccc
Q 011417 294 KSMN 297 (486)
Q Consensus 294 ~~~~ 297 (486)
...+
T Consensus 122 ~p~~ 125 (296)
T cd00842 122 YPVN 125 (296)
T ss_pred Cccc
Confidence 6543
No 465
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=30 Score=34.77 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPK 83 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~ 83 (486)
+..|+-+...+-..++...-...+...+.. +.. .+.....|-..|...+.|+.|-....++.-- +...+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 345566666666677755544444444332 111 2444556677888999999998887776521 113456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
..|.+|.+..-+++|.+|.+++-+|++..|++.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 678899999999999999999999999999854
No 466
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.66 E-value=19 Score=33.23 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=56.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
...+.+.+..++|+...+.-++-+|.+......+-.++.-.|+|++|..-++-+-++.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345678889999999999999999999999999999999999999999999999999998753
No 467
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=77.33 E-value=21 Score=38.31 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (486)
..++.++|..+..+.++++|.++|.+.-.. -++..|++.+.+|++- +...+.-|++.+.+-.++....
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHH
Confidence 567888888888888888888888765332 3455666666666543 3334445888888888888876
Q ss_pred HHhhHHHHHhhcCcc
Q 011417 128 AVKKLKFEEAIAVPE 142 (486)
Q Consensus 128 ~l~~~~~~~A~~~~~ 142 (486)
..|- -++|...+-
T Consensus 864 svGM--C~qAV~a~L 876 (1189)
T KOG2041|consen 864 SVGM--CDQAVEAYL 876 (1189)
T ss_pred hhch--HHHHHHHHH
Confidence 6555 677776655
No 468
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.26 E-value=7.4 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 124 (486)
|+.+.|...|+++++..|.++..|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34566666666666666666666654443
No 469
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.13 E-value=13 Score=31.87 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
.-.+.....+......|+++-|.+....++..+|++.++...++.++.+++.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3445566667777777888888888888888888888888777777777765
No 470
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=76.89 E-value=5.1 Score=38.32 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=20.2
Q ss_pred eEEcccccCCCCChH-----HHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 253 YLFNGDFVDRGSFSV-----EVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 253 ~~~lGd~vdrG~~~~-----e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
++..||+++..+.+. .++..+-.+ +-.++. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g~da~~--GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----GVDAMV--GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----CCeEEe--ccccc
Confidence 356899998765432 333333332 334444 99995
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.86 E-value=5.2 Score=30.21 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=11.8
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 011417 94 AMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~ 111 (486)
..|+|++|+.+|+.+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 566777777777666653
No 472
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=75.53 E-value=2.2 Score=43.07 Aligned_cols=44 Identities=25% Similarity=0.463 Sum_probs=33.0
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccc
Q 011417 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK 298 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~ 298 (486)
.+++-.+||+.||||++-.++..|...- .|=+==||||...+..
T Consensus 191 VDhLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWmgA 234 (648)
T COG3855 191 VDHLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWMGA 234 (648)
T ss_pred hhheeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEeec
Confidence 4579999999999999999988887553 2222349999776643
No 473
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.68 E-value=16 Score=34.53 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
......+|..|+..|+|++|++.|+.+...... ...+...+..|+..+|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445678999999999999999999999765332 25667778899999999988887765543
No 474
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=74.20 E-value=7.1 Score=34.49 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=52.8
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEccccc--CCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFV--DRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~v--drG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 300 (486)
+.-|+|+-.-.+..-+.-=......+ .+..+.-||+- =|=+...+-+.+|-.| |+.=+++|||||...-.
T Consensus 18 pM~vFGe~W~gh~ekI~k~W~~~v~~-eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~s--- 89 (230)
T COG1768 18 PMEVFGEPWSGHHEKIKKHWRSKVSP-EDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWSS--- 89 (230)
T ss_pred ceeecCCcccCchHHHHHHHHhcCCh-hhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccch---
Confidence 47788876655554433222222333 34477779985 3445556666666555 89999999999965432
Q ss_pred CChhhhhhhccHHHHHHHHHHhhccc
Q 011417 301 GFEGEVRSKLSETFVELFAEVFCCLP 326 (486)
Q Consensus 301 ~~~~e~~~~~~~~~~~~~~~~~~~lp 326 (486)
...+...+... ....++.|+.+-
T Consensus 90 --~skl~n~lp~~-l~~~n~~f~l~n 112 (230)
T COG1768 90 --ISKLNNALPPI-LFYLNNGFELLN 112 (230)
T ss_pred --HHHHHhhcCch-HhhhccceeEee
Confidence 11222222222 334556666665
No 475
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.17 E-value=95 Score=32.91 Aligned_cols=116 Identities=9% Similarity=-0.106 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHHhCCC---CHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQ---DASKAIEIDPR---YPKG 84 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~ 84 (486)
+..+.+....|..--..|++..|...|++.....|....+-...+....++|+.+.+.. .+.....-..+ ....
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence 44455666667777778999999999999998889988888888888889999888884 22222221111 2334
Q ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 85 YYRRGA-AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 85 ~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+...+. .+.-.++-+.|...+.+++...|.+...+..+....
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 455553 444567888999999999999999988776666554
No 476
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.29 E-value=8.7 Score=29.01 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
..+..+...|..+-+.|+|++|+.+|+++++.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566778888888888999888888888763
No 477
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.27 E-value=34 Score=35.68 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEID---PR----YPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~ 116 (486)
-+..+|.++.++|+-..|..+|..+++.. .. .|.++|.+|.++..++. ..+|.+++.+|-....++.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 36778999999999999999999988431 11 47899999999999999 9999999999998775553
No 478
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.08 E-value=20 Score=40.30 Aligned_cols=109 Identities=21% Similarity=0.179 Sum_probs=83.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP----------------- 79 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------------- 79 (486)
.-..|..++..+.|+.|.-+|.. ..-|..||..+..+|+|+.|+...+||-+...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45788999999999999888854 56688899999999999999999998753310
Q ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Q 011417 80 --------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK 133 (486)
Q Consensus 80 --------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~ 133 (486)
-+++-+-.+-..|...|-+++-+..++.++-+..-+-.....++.+|.+.+-.+
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~k 1330 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEK 1330 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHH
Confidence 023445666677888888999999999988877666666777777776655433
No 479
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=72.65 E-value=7.5 Score=37.55 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHC-CCCceeeeccccc
Q 011417 394 GADVTKRFLQDN-SLGNLVVRSHEVK 418 (486)
Q Consensus 394 g~~~~~~~l~~~-~~~~~iir~H~~~ 418 (486)
|.+.-.++.++. ++ ++||-||+-.
T Consensus 193 G~~~d~~la~~~~gi-D~IiggH~H~ 217 (281)
T cd07409 193 GYEVDKEIARKVPGV-DVIVGGHSHT 217 (281)
T ss_pred CchhHHHHHHcCCCC-cEEEeCCcCc
Confidence 333334455554 67 9999999754
No 480
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.31 E-value=10 Score=27.80 Aligned_cols=31 Identities=45% Similarity=0.552 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
+.+..+...|..+-+.|++++|+.+|+++++
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455667777778888888888888887765
No 481
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.24 E-value=37 Score=25.65 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
..+..+...|..+-+.|+|++|+.+|.++|+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566778888888889999999988888876
No 482
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=72.21 E-value=40 Score=36.59 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHhC
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQN------------AVYYANRAFAHTKLEEYGSAIQDASKA-----------IEID 78 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~a-----------l~~~ 78 (486)
..|.+.|...+|...-..--.+..+. ...|-.-|.+|.+..++++|+++|++. +...
T Consensus 623 qlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp 702 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP 702 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc-ccccccccccccccc
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE-SERHSVADSIDYQSI 157 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~-~~~~~~a~~~~~~~l 157 (486)
......--.-|.-+...|+++.|+.+|- ++...+..+...++...+.+|+...+ ......+...|....
T Consensus 703 ~evv~lee~wg~hl~~~~q~daainhfi----------ea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia 772 (1636)
T KOG3616|consen 703 EEVVKLEEAWGDHLEQIGQLDAAINHFI----------EANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA 772 (1636)
T ss_pred HHHhhHHHHHhHHHHHHHhHHHHHHHHH----------HhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Q ss_pred ccCCcCCCCcccCCC-ccHHHHHHHHHHHhcccc-----------hhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceE
Q 011417 158 EVEPQYSGARIEGDV-ITLDFVKKMMDDFKNQKC-----------LHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFT 225 (486)
Q Consensus 158 ~~~~~~~~~~l~~~~-l~~~~l~~l~e~l~~~~~-----------l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~ 225 (486)
.-..+-..-...... ..-...+.++....+..+ ..++....+.-.-.+-+.++....+...- ++
T Consensus 773 dhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql----yi 848 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL----YI 848 (1636)
T ss_pred HHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe----eE
Q ss_pred EEc---------cCCCChHHHHHHHHH
Q 011417 226 VCG---------DVHGQFYDLLNIFEL 243 (486)
Q Consensus 226 v~G---------DihG~~~~l~~~l~~ 243 (486)
-+| |-||-.+|++++..+
T Consensus 849 ti~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 849 TIGEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred EccCchHHHHHHHhhCcchHHHHHHHH
No 483
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.04 E-value=8.7 Score=25.59 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=14.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
+.+|..|+..|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666553
No 484
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.99 E-value=9 Score=28.10 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=9.4
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011417 94 AMGKFKEALKDFQQVKK 110 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~ 110 (486)
..|++++|+.+|.++++
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 45566555555555544
No 485
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.93 E-value=7.8 Score=25.80 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=10.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 011417 88 RGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al 109 (486)
+|.+|..+|+++.|.+.++.++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4444555555555555555444
No 486
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.55 E-value=32 Score=39.07 Aligned_cols=101 Identities=19% Similarity=0.232 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--
Q 011417 15 EELKALANEAFRA-------KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY-- 85 (486)
Q Consensus 15 ~~~~~~g~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-- 85 (486)
++.+..|.+...+ ..+++|+..|++ +.-.|.-+-=|...|.+|.++|+|++-++++.-|++..|.++..-
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 4556666666542 246677777766 334566677799999999999999999999999999999887643
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 86 -----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 86 -----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
+++-.+.+. +...|+...--++...|+....
T Consensus 592 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 592 RDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence 333333332 2345777788888888877544
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.27 E-value=76 Score=33.47 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=65.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 011417 4 METENSSVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (486)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 77 (486)
........+-......+-..++..| +|..|+-.+-...++.|... -..+++.|.+|+..
T Consensus 247 i~~~td~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~ 311 (618)
T PF05053_consen 247 IDAHTDSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSART 311 (618)
T ss_dssp CCTTEEEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHH
Confidence 3334444455555556666666655 67788888888777777521 23445555555543
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 011417 78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKEC 125 (486)
Q Consensus 78 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~ 125 (486)
+-.+...|..+|-.|++.++|.+|+.++..|-..- .++.+.+..+..+
T Consensus 312 ~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 312 YYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp HCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34567889999999999999999999998887652 3455665555444
No 488
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.08 E-value=93 Score=28.84 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=57.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 82 (486)
-...+.+.+..++|+...++-++.+|.+......+=..|.-.|+|++|...++-+-.+.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678889999999999999999999999999998999999999999999999999999863
No 489
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=69.99 E-value=9.8 Score=28.62 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
.++|+...++|+..| ..|+|++|+..|..|++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 345555555555544 566777777777777764
No 490
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=68.91 E-value=9 Score=36.46 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 231 HGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 231 hG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
.|.+.-+..++++..-.....-++..||+++.++.+ ..++..+-.+. . . +...||||.
T Consensus 20 ~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~---~-d-~~~~GNHef 82 (257)
T cd07406 20 VGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG---V-D-LACFGNHEF 82 (257)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC---C-c-EEeeccccc
Confidence 345666666776643322222477789999876532 34455544443 1 2 345799994
No 491
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.39 E-value=30 Score=28.72 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
.+..+|+..++.+++-.|+-.|++|+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3567889999999999999999999865
No 492
>PF12854 PPR_1: PPR repeat
Probab=68.12 E-value=13 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.002 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDAS 72 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (486)
...|..+-..|.+.|+.++|.+.++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555555555555555554
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.82 E-value=1.2e+02 Score=32.20 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----h----------------CCCCHHH---HHHHHHHHHHccC
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE-----L----------------NSQNAVY---YANRAFAHTKLEE 63 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~----------------~p~~~~~---~~~lg~~~~~~g~ 63 (486)
...|-+.+.+..+|..+..+|+.+.|..+..++|= . .|.+-.. .+..-..+.+.|-
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34577888999999999999999988888887763 1 2333222 2333445567899
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 011417 64 YGSAIQDASKAIEIDPR-YPKGYYRRGAAYL-AMGKFKEALKDFQQ 107 (486)
Q Consensus 64 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~ 107 (486)
+..|.++++-.++++|. ++-+...+-..|. ...+|+=-++.++.
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999998 7766444443332 44455444444443
No 494
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=66.80 E-value=13 Score=35.49 Aligned_cols=67 Identities=19% Similarity=0.162 Sum_probs=45.5
Q ss_pred ceEEEccCCCC--hHHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~--~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG-~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++..+||+-|. ...+...+.........+-.+..|+....| --+-++...|..+- =.|+.+ |||+..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~G----vDviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSG----VNYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcC----CCEEEc-cchhcc
Confidence 58899999999 455555555543333345466679998766 45788888887664 355665 999853
No 495
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.56 E-value=13 Score=27.92 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
+.+..+...|...-..|+|++|+.+|.+|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45556777777777788888888888888764
No 496
>PF12854 PPR_1: PPR repeat
Probab=66.48 E-value=16 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (486)
.+...|..+-..|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3567788899999999999999999875
No 497
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=65.77 E-value=13 Score=28.07 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhC
Q 011417 65 GSAIQDASKAIEID 78 (486)
Q Consensus 65 ~~A~~~~~~al~~~ 78 (486)
..|+....+|++.|
T Consensus 4 ~~a~~l~~~Ave~D 17 (77)
T cd02683 4 LAAKEVLKRAVELD 17 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 498
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.21 E-value=77 Score=32.84 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=30.7
Q ss_pred HHHHHHHHHccCHHHHHHH-------HHHHHHh-----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 18 KALANEAFRAKKYSQAIDL-------YSQAIEL-----------NSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~-------~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
...+..+.++|-.+.|+.. |+-||+. ..+++..|..||...+.+|+++-|..+|+++
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444555566666666654 2222221 1234566666666666666666666666654
No 499
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.24 E-value=1.8e+02 Score=36.25 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
.-.+.|..+|.+....|+++.|-.+.-+|.+.. -+.++...|..+-..|+...|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999998875 67899999999999999999999999999664
No 500
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.01 E-value=8.5 Score=35.82 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=53.6
Q ss_pred HHccCHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHccC-HHHH-HHHHHHHHH-h-CCCCH--HHHH
Q 011417 25 FRAKKYSQAIDLYSQAIELN---SQN---------AVYYANRAFAHTKLEE-YGSA-IQDASKAIE-I-DPRYP--KGYY 86 (486)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~lg~~~~~~g~-~~~A-~~~~~~al~-~-~p~~~--~~~~ 86 (486)
+..|+|+.|++..+-||+.+ |+. ++-...-+......|+ ++-+ ...+..... . -|+.. +.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 45789999999999999975 332 1112223333444443 1111 112222211 0 13333 3455
Q ss_pred HHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCH
Q 011417 87 RRGAAYL---------AMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 87 ~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
..|..+. ..++...|+.++++|+.++|+-.
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 5677663 55688899999999999998753
Done!