Query 011417
Match_columns 486
No_of_seqs 479 out of 4325
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wao_1 Serine/threonine protei 100.0 1.4E-90 4.9E-95 722.2 39.4 471 10-482 2-472 (477)
2 3h63_A Serine/threonine-protei 100.0 1.6E-81 5.4E-86 604.9 27.6 315 163-478 1-315 (315)
3 3icf_A PPT, serine/threonine-p 100.0 1.8E-81 6.3E-86 608.6 26.5 320 161-484 2-335 (335)
4 3ll8_A Serine/threonine-protei 100.0 3E-74 1E-78 559.3 28.3 289 178-475 30-332 (357)
5 3e7a_A PP-1A, serine/threonine 100.0 2.4E-73 8.2E-78 544.1 26.6 282 178-467 8-298 (299)
6 1aui_A Calcineurin, serine/thr 100.0 9.1E-70 3.1E-74 546.5 27.9 292 177-477 42-347 (521)
7 2ie4_C PP2A-alpha;, serine/thr 100.0 8.2E-69 2.8E-73 519.1 27.9 291 173-471 5-296 (309)
8 1fjm_A Protein serine/threonin 100.0 1E-66 3.5E-71 507.1 26.9 274 189-470 28-302 (330)
9 2z72_A Protein-tyrosine-phosph 100.0 1.2E-39 4.1E-44 322.5 6.0 230 207-453 60-319 (342)
10 2dfj_A Diadenosinetetraphospha 100.0 4.3E-32 1.5E-36 260.3 3.4 195 223-426 2-211 (280)
11 2qjc_A Diadenosine tetraphosph 99.9 2.3E-22 7.7E-27 191.6 11.8 220 206-466 7-246 (262)
12 4gco_A Protein STI-1; structur 99.8 6.7E-20 2.3E-24 154.6 17.9 121 6-126 5-125 (126)
13 1g5b_A Serine/threonine protei 99.8 1.4E-19 4.8E-24 168.1 11.2 163 219-422 10-192 (221)
14 4gyw_A UDP-N-acetylglucosamine 99.8 6.6E-18 2.3E-22 182.8 21.4 145 8-166 3-147 (723)
15 4ga2_A E3 SUMO-protein ligase 99.8 8.8E-18 3E-22 146.0 14.3 124 7-130 24-148 (150)
16 3gyz_A Chaperone protein IPGC; 99.7 2.4E-17 8.2E-22 143.4 15.6 111 6-116 28-138 (151)
17 3urz_A Uncharacterized protein 99.7 1.4E-17 4.6E-22 153.0 14.4 130 13-142 3-148 (208)
18 2pl2_A Hypothetical conserved 99.7 5.8E-18 2E-22 156.6 11.4 130 11-142 2-142 (217)
19 3upv_A Heat shock protein STI1 99.7 6.6E-17 2.2E-21 135.4 16.5 118 11-128 1-124 (126)
20 3vtx_A MAMA; tetratricopeptide 99.7 1.7E-17 5.9E-22 148.3 13.7 139 12-164 3-141 (184)
21 2pl2_A Hypothetical conserved 99.7 4.9E-17 1.7E-21 150.3 16.0 142 8-164 33-185 (217)
22 2vgx_A Chaperone SYCD; alterna 99.7 2.2E-16 7.6E-21 136.8 17.4 123 8-130 15-137 (148)
23 2xcb_A PCRH, regulatory protei 99.7 3.3E-16 1.1E-20 134.4 18.1 126 6-131 10-135 (142)
24 2h6f_A Protein farnesyltransfe 99.7 1.9E-16 6.5E-21 159.1 18.7 147 7-167 90-237 (382)
25 3sz7_A HSC70 cochaperone (SGT) 99.7 3.4E-16 1.2E-20 137.6 18.1 120 7-126 4-123 (164)
26 4gcn_A Protein STI-1; structur 99.7 2.6E-16 8.8E-21 132.6 15.7 114 9-123 3-123 (127)
27 2hr2_A Hypothetical protein; a 99.7 7E-17 2.4E-21 139.8 11.9 121 11-131 8-151 (159)
28 4ga2_A E3 SUMO-protein ligase 99.7 7E-18 2.4E-22 146.7 5.5 131 19-163 2-133 (150)
29 3vtx_A MAMA; tetratricopeptide 99.7 3E-16 1E-20 140.2 16.3 141 9-163 34-174 (184)
30 4i17_A Hypothetical protein; T 99.7 3E-16 1E-20 145.4 16.5 136 13-162 6-149 (228)
31 3rkv_A Putative peptidylprolyl 99.7 3.7E-16 1.3E-20 137.1 15.5 124 8-131 5-147 (162)
32 4gyw_A UDP-N-acetylglucosamine 99.7 1.2E-16 4.1E-21 173.0 13.5 131 10-142 39-169 (723)
33 1a17_A Serine/threonine protei 99.7 2E-15 6.7E-20 131.7 18.3 135 8-142 7-141 (166)
34 2lni_A Stress-induced-phosphop 99.7 1.3E-15 4.5E-20 127.4 15.8 127 4-130 6-132 (133)
35 2vyi_A SGTA protein; chaperone 99.7 6.2E-15 2.1E-19 122.5 19.1 126 6-131 4-129 (131)
36 2h6f_A Protein farnesyltransfe 99.7 3.4E-16 1.1E-20 157.3 11.5 149 9-165 126-275 (382)
37 1p5q_A FKBP52, FK506-binding p 99.6 4.9E-15 1.7E-19 146.4 19.2 127 9-137 142-283 (336)
38 3gyz_A Chaperone protein IPGC; 99.6 9.9E-17 3.4E-21 139.5 5.9 119 30-162 18-136 (151)
39 4i17_A Hypothetical protein; T 99.6 1.9E-15 6.6E-20 139.9 13.6 152 12-163 40-213 (228)
40 3rqz_A Metallophosphoesterase; 99.6 2.4E-15 8.3E-20 141.8 14.4 188 221-461 3-215 (246)
41 3q49_B STIP1 homology and U bo 99.6 6.6E-15 2.3E-19 124.4 15.5 121 10-130 5-130 (137)
42 1elw_A TPR1-domain of HOP; HOP 99.6 2E-14 6.8E-19 117.2 17.3 115 12-126 2-116 (118)
43 2pzi_A Probable serine/threoni 99.6 1.3E-15 4.5E-20 164.8 13.0 146 8-168 427-572 (681)
44 1hxi_A PEX5, peroxisome target 99.6 3.4E-15 1.2E-19 124.6 12.6 104 14-117 17-120 (121)
45 4gco_A Protein STI-1; structur 99.6 1.3E-15 4.6E-20 128.1 9.8 112 39-164 4-115 (126)
46 2fbn_A 70 kDa peptidylprolyl i 99.6 1.9E-14 6.5E-19 130.5 18.0 123 9-131 33-171 (198)
47 4abn_A Tetratricopeptide repea 99.6 1.5E-15 5.3E-20 157.2 12.2 133 9-142 97-245 (474)
48 2dba_A Smooth muscle cell asso 99.6 2.3E-14 8E-19 122.2 16.2 120 7-126 21-143 (148)
49 1na0_A Designed protein CTPR3; 99.6 5.6E-14 1.9E-18 115.6 17.9 117 13-129 8-124 (125)
50 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.6E-14 5.5E-19 148.8 17.1 124 9-132 263-401 (457)
51 1nnw_A Hypothetical protein; s 99.6 3.4E-14 1.2E-18 134.3 17.6 198 223-464 3-222 (252)
52 3as5_A MAMA; tetratricopeptide 99.6 3.4E-14 1.2E-18 125.4 16.3 131 10-142 38-168 (186)
53 2fo7_A Synthetic consensus TPR 99.6 3.4E-14 1.2E-18 118.3 15.4 126 15-142 2-127 (136)
54 3qky_A Outer membrane assembly 99.6 3.9E-14 1.3E-18 134.1 17.4 141 9-163 10-181 (261)
55 4abn_A Tetratricopeptide repea 99.6 2.7E-15 9.1E-20 155.4 10.0 132 27-161 81-252 (474)
56 1w3b_A UDP-N-acetylglucosamine 99.6 5.6E-16 1.9E-20 155.3 4.2 130 11-142 64-193 (388)
57 1elr_A TPR2A-domain of HOP; HO 99.6 7E-14 2.4E-18 116.2 16.2 120 11-131 1-127 (131)
58 3as5_A MAMA; tetratricopeptide 99.6 1.8E-13 6.3E-18 120.7 19.0 131 10-142 4-134 (186)
59 1hh8_A P67PHOX, NCF-2, neutrop 99.6 5.1E-14 1.7E-18 128.5 15.5 135 12-163 4-154 (213)
60 2xev_A YBGF; tetratricopeptide 99.6 9.5E-14 3.2E-18 115.9 15.4 112 15-126 3-120 (129)
61 2vsy_A XCC0866; transferase, g 99.6 4.2E-14 1.4E-18 149.6 16.2 145 8-166 17-164 (568)
62 1ihg_A Cyclophilin 40; ppiase 99.5 7E-14 2.4E-18 139.9 16.7 126 11-138 220-361 (370)
63 2vq2_A PILW, putative fimbrial 99.5 8.9E-14 3E-18 127.0 15.8 133 8-142 2-137 (225)
64 1w3b_A UDP-N-acetylglucosamine 99.5 2.2E-14 7.4E-19 143.7 12.7 131 10-142 165-295 (388)
65 2vgx_A Chaperone SYCD; alterna 99.5 5.5E-15 1.9E-19 128.0 7.1 116 33-162 6-121 (148)
66 1zu2_A Mitochondrial import re 99.5 3.1E-14 1.1E-18 122.9 11.3 102 25-126 13-135 (158)
67 2q7f_A YRRB protein; TPR, prot 99.5 1.4E-13 4.7E-18 127.7 16.6 132 9-142 52-183 (243)
68 2q7f_A YRRB protein; TPR, prot 99.5 7.5E-14 2.6E-18 129.5 14.8 142 10-165 87-228 (243)
69 2c2l_A CHIP, carboxy terminus 99.5 9.5E-14 3.3E-18 133.5 16.0 105 12-116 2-106 (281)
70 4eqf_A PEX5-related protein; a 99.5 2.7E-13 9.3E-18 134.3 19.6 129 12-142 63-237 (365)
71 3qky_A Outer membrane assembly 99.5 9.8E-14 3.4E-18 131.3 15.5 141 11-163 49-228 (261)
72 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-13 7E-18 129.0 17.4 131 9-142 38-168 (275)
73 3urz_A Uncharacterized protein 99.5 2.4E-13 8.3E-18 124.4 16.9 132 9-143 33-182 (208)
74 2y4t_A DNAJ homolog subfamily 99.5 1.2E-13 4E-18 140.7 16.2 155 6-162 18-175 (450)
75 3uq3_A Heat shock protein STI1 99.5 1.1E-13 3.7E-18 129.3 14.7 128 13-142 78-231 (258)
76 2ho1_A Type 4 fimbrial biogene 99.5 4.8E-13 1.6E-17 125.1 19.1 133 8-142 30-165 (252)
77 3u4t_A TPR repeat-containing p 99.5 8E-14 2.7E-18 131.9 13.3 135 14-163 3-141 (272)
78 3ieg_A DNAJ homolog subfamily 99.5 4E-14 1.4E-18 138.8 11.3 149 13-163 2-153 (359)
79 4eqf_A PEX5-related protein; a 99.5 5.1E-14 1.8E-18 139.6 12.0 129 33-163 46-210 (365)
80 2vq2_A PILW, putative fimbrial 99.5 2.5E-13 8.4E-18 124.1 15.3 131 10-142 38-171 (225)
81 2kck_A TPR repeat; tetratricop 99.5 5.2E-14 1.8E-18 113.7 9.5 106 11-116 3-111 (112)
82 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-13 5.8E-18 128.2 14.4 131 10-142 67-199 (252)
83 2if4_A ATFKBP42; FKBP-like, al 99.5 2.3E-14 7.7E-19 141.7 8.7 133 9-142 174-323 (338)
84 1fch_A Peroxisomal targeting s 99.5 6.4E-13 2.2E-17 131.3 19.2 131 10-142 94-275 (368)
85 3uq3_A Heat shock protein STI1 99.5 4.4E-14 1.5E-18 132.0 10.2 137 11-162 2-171 (258)
86 2e2e_A Formate-dependent nitri 99.5 3.9E-13 1.3E-17 119.1 15.7 117 10-126 40-159 (177)
87 3hym_B Cell division cycle pro 99.5 5.6E-13 1.9E-17 129.2 18.1 130 11-142 87-217 (330)
88 3hym_B Cell division cycle pro 99.5 2.8E-13 9.6E-18 131.4 15.7 135 15-163 160-303 (330)
89 2pzi_A Probable serine/threoni 99.5 2.2E-14 7.7E-19 155.1 8.5 171 10-198 390-570 (681)
90 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.5E-13 5.2E-18 127.3 12.9 151 13-163 3-180 (225)
91 1qqe_A Vesicular transport pro 99.5 3.4E-13 1.2E-17 130.2 15.6 142 11-166 74-235 (292)
92 3qfm_A SAPH, putative uncharac 99.5 1.8E-13 6.3E-18 130.5 13.4 114 223-342 13-139 (270)
93 2xcb_A PCRH, regulatory protei 99.5 3.6E-14 1.2E-18 121.5 7.2 115 35-163 5-119 (142)
94 2e2e_A Formate-dependent nitri 99.5 7.4E-14 2.5E-18 123.9 9.4 128 22-163 18-148 (177)
95 3qou_A Protein YBBN; thioredox 99.5 9.4E-14 3.2E-18 134.0 10.8 139 11-163 114-252 (287)
96 2r5s_A Uncharacterized protein 99.5 4.2E-14 1.4E-18 125.7 7.3 139 11-164 3-142 (176)
97 3k9i_A BH0479 protein; putativ 99.5 8.2E-14 2.8E-18 115.0 8.2 97 26-122 2-101 (117)
98 3cv0_A Peroxisome targeting si 99.5 5.4E-13 1.8E-17 129.1 15.2 130 11-142 169-310 (327)
99 2yhc_A BAMD, UPF0169 lipoprote 99.5 7.1E-13 2.4E-17 122.7 15.0 131 10-142 37-208 (225)
100 1fch_A Peroxisomal targeting s 99.5 6E-13 2.1E-17 131.5 15.3 128 13-142 216-354 (368)
101 3u4t_A TPR repeat-containing p 99.4 5.7E-13 1.9E-17 126.0 13.3 118 14-131 74-191 (272)
102 3mkr_A Coatomer subunit epsilo 99.4 1E-12 3.5E-17 127.0 15.0 139 11-163 127-268 (291)
103 3ieg_A DNAJ homolog subfamily 99.4 1.2E-12 4.2E-17 128.1 15.4 131 10-142 33-178 (359)
104 3fp2_A TPR repeat-containing p 99.4 6.8E-13 2.3E-17 138.1 13.3 124 14-140 243-366 (537)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6E-12 2.1E-16 114.5 16.2 105 13-117 36-156 (213)
106 1hxi_A PEX5, peroxisome target 99.4 2.4E-12 8.1E-17 107.1 12.0 100 50-163 19-118 (121)
107 2r5s_A Uncharacterized protein 99.4 9.7E-13 3.3E-17 116.8 10.2 132 8-142 34-168 (176)
108 2xpi_A Anaphase-promoting comp 99.4 3E-12 1E-16 135.3 15.8 130 11-142 370-499 (597)
109 2y4t_A DNAJ homolog subfamily 99.4 4.6E-12 1.6E-16 128.8 16.4 138 12-163 209-362 (450)
110 3upv_A Heat shock protein STI1 99.4 1.5E-12 5E-17 108.6 10.4 105 45-163 1-105 (126)
111 4gcn_A Protein STI-1; structur 99.4 1.1E-12 3.8E-17 110.2 8.9 95 46-142 6-107 (127)
112 2hr2_A Hypothetical protein; a 99.4 1.8E-12 6.1E-17 112.1 10.1 105 48-166 11-138 (159)
113 2ond_A Cleavage stimulation fa 99.4 1.6E-11 5.3E-16 119.3 17.9 131 10-142 95-227 (308)
114 3qou_A Protein YBBN; thioredox 99.4 1.4E-12 4.9E-17 125.6 10.3 132 9-142 146-279 (287)
115 2xpi_A Anaphase-promoting comp 99.4 5.5E-12 1.9E-16 133.2 15.4 136 14-163 441-583 (597)
116 3edt_B KLC 2, kinesin light ch 99.4 3.4E-12 1.2E-16 120.4 12.0 132 9-142 38-193 (283)
117 3mkr_A Coatomer subunit epsilo 99.4 5.6E-12 1.9E-16 121.8 13.5 137 10-165 97-235 (291)
118 2fo7_A Synthetic consensus TPR 99.4 1.8E-11 6.2E-16 101.5 14.8 105 11-115 32-136 (136)
119 2vsy_A XCC0866; transferase, g 99.3 2.4E-12 8.3E-17 136.0 11.7 123 27-163 2-124 (568)
120 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.4E-12 8.2E-17 121.5 10.5 127 23-163 14-144 (275)
121 3sz7_A HSC70 cochaperone (SGT) 99.3 3.7E-12 1.3E-16 111.5 10.9 108 44-165 7-114 (164)
122 4g1t_A Interferon-induced prot 99.3 1.2E-11 4.2E-16 126.7 16.2 143 10-163 47-208 (472)
123 3cv0_A Peroxisome targeting si 99.3 2.3E-12 7.9E-17 124.7 10.3 127 23-163 147-273 (327)
124 1qqe_A Vesicular transport pro 99.3 4.1E-12 1.4E-16 122.6 11.2 107 12-118 115-235 (292)
125 2l6j_A TPR repeat-containing p 99.3 1.1E-12 3.9E-17 106.0 6.0 94 13-106 3-102 (111)
126 3fp2_A TPR repeat-containing p 99.3 3.4E-11 1.2E-15 125.2 18.7 127 14-142 276-402 (537)
127 2kat_A Uncharacterized protein 99.3 2.9E-11 9.9E-16 99.0 14.3 101 31-131 2-104 (115)
128 1p5q_A FKBP52, FK506-binding p 99.3 1.4E-12 4.7E-17 128.7 7.4 125 26-164 125-264 (336)
129 3edt_B KLC 2, kinesin light ch 99.3 6E-12 2.1E-16 118.7 11.3 104 8-111 79-198 (283)
130 3q49_B STIP1 homology and U bo 99.3 9.3E-12 3.2E-16 104.8 11.0 107 42-162 3-109 (137)
131 2ond_A Cleavage stimulation fa 99.3 3.7E-11 1.3E-15 116.7 15.8 140 10-162 46-201 (308)
132 1ouv_A Conserved hypothetical 99.3 4.5E-11 1.5E-15 113.4 15.8 125 10-142 2-138 (273)
133 2gw1_A Mitochondrial precursor 99.3 5.8E-12 2E-16 130.0 10.1 116 13-128 303-424 (514)
134 1dce_A Protein (RAB geranylger 99.3 1.8E-11 6.1E-16 129.1 13.9 146 9-166 58-228 (567)
135 1na3_A Designed protein CTPR2; 99.3 5.7E-11 2E-15 92.2 12.8 86 11-96 6-91 (91)
136 2kck_A TPR repeat; tetratricop 99.3 7.8E-12 2.7E-16 100.6 8.1 98 43-142 1-101 (112)
137 2gw1_A Mitochondrial precursor 99.3 3.4E-11 1.2E-15 124.3 14.9 174 11-212 234-407 (514)
138 3nf1_A KLC 1, kinesin light ch 99.3 9.7E-12 3.3E-16 119.3 9.9 133 8-142 105-302 (311)
139 3nf1_A KLC 1, kinesin light ch 99.3 3E-11 1E-15 115.9 12.5 132 9-142 64-219 (311)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.6E-12 5.4E-17 133.9 3.0 127 26-166 246-387 (457)
141 2fbn_A 70 kDa peptidylprolyl i 99.2 5.4E-12 1.8E-16 114.1 5.9 133 17-163 7-155 (198)
142 2ifu_A Gamma-SNAP; membrane fu 99.2 2E-11 6.8E-16 118.6 9.9 139 11-165 73-229 (307)
143 3ulq_A Response regulator aspa 99.2 3.4E-11 1.2E-15 120.4 11.8 133 8-142 137-288 (383)
144 3ro3_A PINS homolog, G-protein 99.2 5.4E-11 1.8E-15 102.0 10.8 132 9-142 4-153 (164)
145 3rkv_A Putative peptidylprolyl 99.2 3.2E-11 1.1E-15 105.2 9.2 103 47-163 10-130 (162)
146 2l6j_A TPR repeat-containing p 99.2 6E-11 2E-15 95.7 10.1 94 47-142 3-102 (111)
147 2kc7_A BFR218_protein; tetratr 99.2 2.9E-11 9.8E-16 96.0 8.0 92 17-116 3-95 (99)
148 4g1t_A Interferon-induced prot 99.2 3.4E-11 1.2E-15 123.4 10.3 143 10-166 132-283 (472)
149 1na3_A Designed protein CTPR2; 99.2 1.7E-10 5.7E-15 89.5 11.9 84 46-129 7-90 (91)
150 1a17_A Serine/threonine protei 99.2 1.8E-10 6.3E-15 99.7 13.5 102 10-111 43-146 (166)
151 3dra_A Protein farnesyltransfe 99.2 1.3E-10 4.5E-15 112.5 13.6 119 11-129 64-193 (306)
152 2lni_A Stress-induced-phosphop 99.2 6.2E-11 2.1E-15 98.5 9.7 106 44-163 12-117 (133)
153 1elw_A TPR1-domain of HOP; HOP 99.2 1.9E-10 6.5E-15 93.1 11.9 103 47-163 3-105 (118)
154 3rjv_A Putative SEL1 repeat pr 99.2 4.4E-11 1.5E-15 109.7 8.7 126 12-142 16-153 (212)
155 3dss_A Geranylgeranyl transfer 99.2 4.6E-10 1.6E-14 109.5 16.2 147 8-166 58-229 (331)
156 1ouv_A Conserved hypothetical 99.2 4.3E-10 1.5E-14 106.6 15.5 126 11-142 35-174 (273)
157 4a1s_A PINS, partner of inscut 99.2 1.6E-10 5.6E-15 115.9 12.9 122 10-131 44-181 (411)
158 3ma5_A Tetratricopeptide repea 99.2 2.9E-10 1E-14 90.8 11.8 84 43-126 2-87 (100)
159 2dba_A Smooth muscle cell asso 99.2 1.9E-10 6.6E-15 97.5 11.4 108 42-163 22-132 (148)
160 2qfc_A PLCR protein; TPR, HTH, 99.2 2.1E-10 7.3E-15 110.3 12.9 127 14-142 115-261 (293)
161 2qfc_A PLCR protein; TPR, HTH, 99.2 2.3E-09 7.8E-14 103.1 20.1 131 10-142 71-220 (293)
162 3dss_A Geranylgeranyl transfer 99.1 4.5E-10 1.6E-14 109.5 14.7 143 9-163 103-271 (331)
163 3ulq_A Response regulator aspa 99.1 9E-11 3.1E-15 117.3 10.0 124 17-142 106-248 (383)
164 1zu2_A Mitochondrial import re 99.1 6.2E-11 2.1E-15 102.2 7.4 93 59-163 13-124 (158)
165 2vyi_A SGTA protein; chaperone 99.1 1.5E-10 5E-15 95.6 9.6 107 42-162 6-112 (131)
166 1na0_A Designed protein CTPR3; 99.1 4E-10 1.4E-14 92.0 12.1 98 43-142 3-101 (125)
167 3q15_A PSP28, response regulat 99.1 1.2E-10 4E-15 116.4 10.5 133 8-142 135-285 (378)
168 3u3w_A Transcriptional activat 99.1 9.1E-11 3.1E-15 113.0 8.7 126 16-142 117-261 (293)
169 2xev_A YBGF; tetratricopeptide 99.1 2.2E-10 7.6E-15 95.1 9.9 100 49-162 3-108 (129)
170 3gw4_A Uncharacterized protein 99.1 1.6E-10 5.6E-15 103.7 9.8 129 12-142 24-171 (203)
171 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.9E-15 122.9 9.9 123 9-131 102-241 (567)
172 3q7a_A Farnesyltransferase alp 99.1 1.6E-08 5.3E-13 99.1 23.3 148 7-166 47-203 (349)
173 2c2l_A CHIP, carboxy terminus 99.1 2.3E-10 7.9E-15 109.7 10.2 105 45-163 1-105 (281)
174 3k9i_A BH0479 protein; putativ 99.1 5.6E-10 1.9E-14 91.7 11.0 78 10-87 23-100 (117)
175 3sf4_A G-protein-signaling mod 99.1 3E-10 1E-14 113.2 10.5 132 9-142 182-331 (406)
176 3q7a_A Farnesyltransferase alp 99.1 4.6E-10 1.6E-14 110.0 11.4 123 9-131 83-216 (349)
177 1wao_1 Serine/threonine protei 99.1 8.9E-11 3.1E-15 121.4 6.6 108 10-117 36-156 (477)
178 3dra_A Protein farnesyltransfe 99.1 1.2E-09 4.3E-14 105.6 14.3 123 9-131 98-235 (306)
179 3ro2_A PINS homolog, G-protein 99.1 7.8E-10 2.7E-14 106.5 12.8 120 12-131 3-138 (338)
180 2ifu_A Gamma-SNAP; membrane fu 99.1 2.1E-10 7E-15 111.4 8.4 127 13-142 35-179 (307)
181 2ooe_A Cleavage stimulation fa 99.1 1.1E-09 3.6E-14 114.6 14.4 177 10-209 317-495 (530)
182 3ro2_A PINS homolog, G-protein 99.1 1.9E-10 6.5E-15 110.9 7.9 132 9-142 178-327 (338)
183 1elr_A TPR2A-domain of HOP; HO 99.1 3.5E-10 1.2E-14 93.4 8.4 95 46-142 2-103 (131)
184 3ma5_A Tetratricopeptide repea 99.1 6.9E-10 2.4E-14 88.6 9.8 85 9-93 2-88 (100)
185 3u3w_A Transcriptional activat 99.1 1.5E-09 5.3E-14 104.3 14.1 183 10-212 71-272 (293)
186 4a1s_A PINS, partner of inscut 99.1 1.6E-10 5.3E-15 116.1 7.3 131 10-142 219-367 (411)
187 3rjv_A Putative SEL1 repeat pr 99.1 5.3E-10 1.8E-14 102.4 10.2 127 12-142 48-192 (212)
188 3sf4_A G-protein-signaling mod 99.0 6E-10 2E-14 111.0 10.9 120 12-131 7-142 (406)
189 2if4_A ATFKBP42; FKBP-like, al 99.0 3.6E-10 1.2E-14 111.5 6.9 103 15-117 231-334 (338)
190 4f3v_A ESX-1 secretion system 99.0 4.6E-10 1.6E-14 106.5 7.3 126 14-142 102-232 (282)
191 2kc7_A BFR218_protein; tetratr 99.0 2.3E-09 7.7E-14 84.8 10.1 71 51-121 3-74 (99)
192 3q15_A PSP28, response regulat 99.0 1E-09 3.5E-14 109.5 9.1 133 10-142 178-327 (378)
193 1ihg_A Cyclophilin 40; ppiase 99.0 3E-09 1E-13 106.1 12.5 96 9-104 268-363 (370)
194 4f3v_A ESX-1 secretion system 99.0 4.3E-09 1.5E-13 99.9 12.7 114 8-123 130-248 (282)
195 3ro3_A PINS homolog, G-protein 98.9 8E-09 2.7E-13 88.1 11.4 104 11-114 46-161 (164)
196 3n71_A Histone lysine methyltr 98.9 8E-09 2.7E-13 106.5 13.1 125 16-142 311-459 (490)
197 2kat_A Uncharacterized protein 98.9 6.8E-09 2.3E-13 84.6 10.0 88 9-96 14-103 (115)
198 2ooe_A Cleavage stimulation fa 98.9 4.7E-09 1.6E-13 109.7 11.3 141 10-163 268-424 (530)
199 1pc2_A Mitochondria fission pr 98.9 2.1E-08 7.1E-13 85.5 12.8 102 29-130 13-119 (152)
200 3gw4_A Uncharacterized protein 98.8 1.2E-08 4.1E-13 91.3 10.6 116 24-142 2-131 (203)
201 1s3l_A Hypothetical protein MJ 98.8 6.5E-08 2.2E-12 86.8 15.2 65 222-296 26-90 (190)
202 3bee_A Putative YFRE protein; 98.8 4.7E-08 1.6E-12 76.9 11.2 74 44-117 2-78 (93)
203 1hz4_A MALT regulatory protein 98.8 4.2E-08 1.4E-12 97.1 12.8 128 13-142 52-198 (373)
204 1hz4_A MALT regulatory protein 98.7 2.7E-08 9.1E-13 98.6 10.4 129 12-142 12-159 (373)
205 2xm6_A Protein corresponding t 98.7 8.6E-08 3E-12 99.0 14.6 106 16-127 293-410 (490)
206 3qww_A SET and MYND domain-con 98.7 9.2E-08 3.2E-12 97.0 13.0 99 22-120 306-425 (433)
207 1uf3_A Hypothetical protein TT 98.7 1.6E-07 5.4E-12 86.4 13.4 72 222-295 6-77 (228)
208 2a22_A Vacuolar protein sortin 98.7 8.7E-08 3E-12 87.9 11.4 119 222-419 26-153 (215)
209 2v5f_A Prolyl 4-hydroxylase su 98.7 2.6E-07 8.8E-12 74.2 12.6 78 48-125 5-89 (104)
210 2xm6_A Protein corresponding t 98.7 2.4E-07 8.1E-12 95.7 15.6 125 12-142 37-175 (490)
211 3e4b_A ALGK; tetratricopeptide 98.7 8.9E-08 3E-12 98.1 12.0 122 15-142 177-311 (452)
212 3qwp_A SET and MYND domain-con 98.7 9E-08 3.1E-12 97.2 11.7 114 14-127 287-424 (429)
213 2kkn_A Uncharacterized protein 98.7 4.4E-08 1.5E-12 87.0 8.2 84 223-342 24-112 (178)
214 1klx_A Cysteine rich protein B 98.7 2.7E-07 9.2E-12 78.1 12.8 88 20-111 31-126 (138)
215 2v5f_A Prolyl 4-hydroxylase su 98.7 2.2E-07 7.6E-12 74.5 11.3 76 14-89 5-87 (104)
216 3ly7_A Transcriptional activat 98.6 2.2E-07 7.5E-12 91.0 12.7 136 13-163 195-343 (372)
217 1klx_A Cysteine rich protein B 98.6 2.1E-07 7.3E-12 78.8 11.0 108 27-142 8-121 (138)
218 3ck2_A Conserved uncharacteriz 98.6 1.1E-07 3.9E-12 84.2 9.3 108 223-420 8-118 (176)
219 3bee_A Putative YFRE protein; 98.6 1.3E-07 4.4E-12 74.3 8.4 72 10-81 2-76 (93)
220 1z2w_A Vacuolar protein sortin 98.6 5.6E-07 1.9E-11 80.9 13.8 65 222-295 11-77 (192)
221 1xi4_A Clathrin heavy chain; a 98.6 2.7E-07 9.4E-12 103.2 13.3 92 12-108 1103-1221(1630)
222 1su1_A Hypothetical protein YF 98.6 7.1E-08 2.4E-12 88.0 7.2 68 223-295 27-102 (208)
223 3n71_A Histone lysine methyltr 98.6 1.4E-07 4.9E-12 97.2 10.0 107 6-112 343-465 (490)
224 3e4b_A ALGK; tetratricopeptide 98.5 3.9E-07 1.4E-11 93.2 10.2 124 13-142 140-275 (452)
225 1xm7_A Hypothetical protein AQ 98.5 5.3E-07 1.8E-11 81.2 9.3 136 223-424 3-156 (195)
226 3u64_A Protein TP_0956; tetrat 98.4 1.5E-06 5E-11 81.8 12.2 109 7-115 145-273 (301)
227 3mv2_B Coatomer subunit epsilo 98.4 1.8E-06 6.2E-11 82.9 11.9 126 14-142 100-235 (310)
228 3ib7_A ICC protein; metallopho 98.4 3.3E-06 1.1E-10 82.3 14.2 73 221-293 25-112 (330)
229 1nzn_A CGI-135 protein, fissio 98.3 7.2E-06 2.5E-10 67.3 12.6 105 25-129 12-121 (126)
230 1b89_A Protein (clathrin heavy 98.3 5.1E-07 1.7E-11 90.7 6.9 120 16-166 124-243 (449)
231 1xi4_A Clathrin heavy chain; a 98.3 3.4E-06 1.1E-10 94.6 12.4 120 15-142 1196-1340(1630)
232 3mv2_B Coatomer subunit epsilo 98.3 3.4E-06 1.2E-10 81.0 10.3 118 11-131 133-270 (310)
233 1pc2_A Mitochondria fission pr 98.3 3.1E-06 1.1E-10 72.0 8.8 81 11-91 29-114 (152)
234 4b4t_Q 26S proteasome regulato 98.2 3.1E-06 1.1E-10 85.1 10.4 130 11-142 52-199 (434)
235 3d03_A Phosphohydrolase; glyce 98.2 3.7E-05 1.3E-09 72.5 16.8 68 223-294 2-84 (274)
236 3ly7_A Transcriptional activat 98.2 9.6E-06 3.3E-10 79.3 12.4 108 9-117 228-345 (372)
237 4b4t_Q 26S proteasome regulato 98.2 2.5E-06 8.5E-11 85.9 8.1 127 14-142 4-159 (434)
238 1b89_A Protein (clathrin heavy 98.2 1.1E-05 3.8E-10 81.0 12.1 120 14-142 148-267 (449)
239 3u64_A Protein TP_0956; tetrat 98.2 6.2E-06 2.1E-10 77.6 9.3 108 43-163 147-273 (301)
240 3qwp_A SET and MYND domain-con 97.9 2.3E-05 7.8E-10 79.4 9.4 90 5-94 320-425 (429)
241 3qww_A SET and MYND domain-con 97.9 5E-05 1.7E-09 76.9 11.5 80 6-85 332-424 (433)
242 2nxf_A Putative dimetal phosph 97.9 2.2E-05 7.6E-10 75.8 8.4 72 222-294 6-100 (322)
243 4e6h_A MRNA 3'-END-processing 97.9 0.00025 8.5E-09 75.9 17.1 178 11-212 375-576 (679)
244 3rl5_A Metallophosphoesterase 97.8 0.00012 4.2E-09 69.6 11.3 63 221-294 59-123 (296)
245 2yvt_A Hypothetical protein AQ 97.8 1.5E-05 5E-10 74.9 4.3 72 222-295 6-103 (260)
246 1y8m_A FIS1; mitochondria, unk 97.7 0.0016 5.5E-08 54.2 14.8 85 45-129 36-124 (144)
247 2xmo_A LMO2642 protein; phosph 97.6 0.0024 8.4E-08 64.7 18.6 73 221-295 39-139 (443)
248 3ffl_A Anaphase-promoting comp 97.6 0.00043 1.5E-08 59.3 10.6 111 15-126 21-165 (167)
249 3o48_A Mitochondria fission 1 97.6 0.00059 2E-08 56.0 10.9 85 46-130 38-126 (134)
250 4e6h_A MRNA 3'-END-processing 97.5 0.00021 7.3E-09 76.4 9.4 81 31-111 326-407 (679)
251 2uy1_A Cleavage stimulation fa 97.5 0.0038 1.3E-07 64.2 17.9 196 12-246 211-451 (493)
252 1nzn_A CGI-135 protein, fissio 97.3 0.0007 2.4E-08 55.4 7.9 80 12-91 33-117 (126)
253 4h7y_A Dual specificity protei 97.3 0.0034 1.2E-07 52.6 11.4 108 10-118 9-130 (161)
254 3o48_A Mitochondria fission 1 97.0 0.0048 1.6E-07 50.6 10.1 80 13-92 39-122 (134)
255 1y8m_A FIS1; mitochondria, unk 96.9 0.011 3.7E-07 49.2 11.6 80 12-91 37-120 (144)
256 3av0_A DNA double-strand break 96.8 0.0017 6E-08 64.6 6.7 73 221-295 20-109 (386)
257 2q8u_A Exonuclease, putative; 96.7 0.00083 2.8E-08 65.5 3.6 72 221-295 18-110 (336)
258 3ffl_A Anaphase-promoting comp 96.7 0.0038 1.3E-07 53.4 7.1 92 49-142 21-146 (167)
259 1ii7_A MRE11 nuclease; RAD50, 96.6 0.0022 7.6E-08 62.4 6.0 70 223-294 2-88 (333)
260 2ff4_A Probable regulatory pro 96.3 0.073 2.5E-06 52.7 14.9 99 12-110 113-233 (388)
261 1ute_A Protein (II purple acid 96.2 0.039 1.3E-06 52.3 12.3 73 222-294 7-95 (313)
262 4h7y_A Dual specificity protei 96.1 0.038 1.3E-06 46.3 9.5 98 42-142 7-118 (161)
263 2uy1_A Cleavage stimulation fa 95.8 0.2 6.9E-06 51.2 15.9 114 13-131 285-399 (493)
264 4g26_A Pentatricopeptide repea 95.7 0.18 6.2E-06 51.7 14.9 99 14-112 105-205 (501)
265 3kae_A CDC27, possible protein 95.5 0.12 4.2E-06 44.0 10.5 98 16-118 35-150 (242)
266 3tho_B Exonuclease, putative; 95.5 0.007 2.4E-07 60.0 3.3 69 223-294 2-91 (379)
267 4fbk_A DNA repair and telomere 95.2 0.022 7.5E-07 57.4 6.1 53 221-274 76-140 (472)
268 4g26_A Pentatricopeptide repea 95.2 0.5 1.7E-05 48.4 16.3 112 29-142 85-199 (501)
269 1ya0_A SMG-7 transcript varian 95.2 0.11 3.7E-06 53.1 11.1 78 50-127 154-231 (497)
270 4fbw_A DNA repair protein RAD3 95.2 0.023 7.8E-07 56.7 5.9 54 221-275 13-78 (417)
271 1zbp_A Hypothetical protein VP 95.2 0.24 8.3E-06 45.7 12.3 63 22-84 5-67 (273)
272 4gns_B Protein CSD3, chitin bi 95.0 0.073 2.5E-06 57.0 9.7 52 55-106 344-395 (754)
273 3t1i_A Double-strand break rep 95.0 0.022 7.6E-07 57.0 5.4 55 221-276 32-98 (431)
274 4gns_B Protein CSD3, chitin bi 95.0 0.055 1.9E-06 58.0 8.8 52 17-68 340-391 (754)
275 1ya0_A SMG-7 transcript varian 94.8 0.14 4.9E-06 52.2 10.8 81 15-95 153-233 (497)
276 2qfp_A Purple acid phosphatase 94.6 0.039 1.3E-06 55.4 6.2 71 222-295 120-198 (424)
277 1xzw_A Purple acid phosphatase 93.8 0.065 2.2E-06 53.8 5.8 71 222-295 127-205 (426)
278 3txn_A 26S proteasome regulato 93.3 0.75 2.6E-05 45.3 12.2 94 18-111 103-210 (394)
279 2ff4_A Probable regulatory pro 92.6 0.44 1.5E-05 47.0 9.6 62 15-76 172-233 (388)
280 3kae_A CDC27, possible protein 92.5 3.2 0.00011 35.4 13.0 67 13-79 61-145 (242)
281 4b4t_R RPN7, 26S proteasome re 92.5 1 3.4E-05 45.1 12.1 99 15-113 132-239 (429)
282 3mkq_A Coatomer beta'-subunit; 91.5 1.7 5.8E-05 46.6 13.5 47 23-74 661-707 (814)
283 1zbp_A Hypothetical protein VP 91.0 1.2 4E-05 41.2 9.6 64 56-119 5-68 (273)
284 4b4t_P 26S proteasome regulato 90.9 4 0.00014 40.8 14.6 100 12-111 135-247 (445)
285 3spa_A Mtrpol, DNA-directed RN 90.2 4.8 0.00017 44.4 15.0 101 12-112 125-231 (1134)
286 3txn_A 26S proteasome regulato 89.2 2.3 7.8E-05 41.8 10.8 130 13-142 18-205 (394)
287 3tgh_A Glideosome-associated p 88.9 0.13 4.4E-06 49.9 1.6 72 223-294 5-86 (342)
288 3mkq_A Coatomer beta'-subunit; 88.8 1.9 6.4E-05 46.3 10.9 121 18-156 633-762 (814)
289 3mkq_B Coatomer subunit alpha; 88.4 4.2 0.00014 35.0 10.6 49 22-75 13-61 (177)
290 4fhn_B Nucleoporin NUP120; pro 87.7 2.5 8.5E-05 47.9 11.3 116 20-141 818-961 (1139)
291 4fhn_B Nucleoporin NUP120; pro 87.5 1 3.5E-05 51.1 8.0 94 15-108 843-964 (1139)
292 3qfk_A Uncharacterized protein 86.5 0.39 1.3E-05 49.5 3.6 66 223-293 21-112 (527)
293 2z1a_A 5'-nucleotidase; metal- 81.5 0.97 3.3E-05 46.8 4.0 66 223-293 31-118 (552)
294 1hp1_A 5'-nucleotidase; metall 80.8 0.68 2.3E-05 47.5 2.5 66 223-293 10-94 (516)
295 4h2g_A 5'-nucleotidase; dimer, 80.3 1.1 3.8E-05 46.3 3.9 66 223-293 27-117 (546)
296 3mkq_B Coatomer subunit alpha; 80.1 8.1 0.00028 33.2 8.7 83 13-108 33-115 (177)
297 4gq2_M Nucleoporin NUP120; bet 79.7 12 0.0004 41.4 12.1 94 20-117 816-933 (950)
298 2w2u_A Hypothetical P60 katani 77.0 2.2 7.5E-05 31.8 3.6 34 9-42 14-47 (83)
299 1qsa_A Protein (soluble lytic 76.8 6.2 0.00021 41.3 8.3 50 60-109 297-346 (618)
300 4b4t_S RPN3, 26S proteasome re 76.5 3.9 0.00013 41.5 6.4 67 48-116 231-304 (523)
301 4b4t_R RPN7, 26S proteasome re 73.4 4.2 0.00015 40.4 5.8 66 47-112 130-198 (429)
302 3ztv_A NAD nucleotidase, NADN; 72.5 2.7 9.2E-05 43.7 4.3 66 223-293 14-105 (579)
303 2w2u_A Hypothetical P60 katani 71.3 5.5 0.00019 29.6 4.6 17 94-110 31-47 (83)
304 2v6y_A AAA family ATPase, P60 69.7 6.2 0.00021 29.3 4.6 31 65-110 9-39 (83)
305 3u84_A Menin; MLL, JUND, ledgf 68.7 65 0.0022 31.4 12.3 110 2-126 245-368 (550)
306 2crb_A Nuclear receptor bindin 68.3 13 0.00046 27.9 5.9 32 10-41 11-42 (97)
307 2v6y_A AAA family ATPase, P60 67.9 8.9 0.00031 28.4 5.1 31 12-42 9-39 (83)
308 4gq4_A Menin; tumor suppressor 67.5 58 0.002 31.8 11.7 108 4-126 232-353 (489)
309 3re2_A Predicted protein; meni 66.5 79 0.0027 30.3 12.2 107 5-126 226-346 (472)
310 4b4t_S RPN3, 26S proteasome re 66.3 9.7 0.00033 38.6 6.6 69 11-81 228-303 (523)
311 1wy6_A Hypothetical protein ST 65.8 31 0.0011 28.3 8.1 81 26-111 73-154 (172)
312 2cfu_A SDSA1; SDS-hydrolase, l 64.5 12 0.00042 39.4 7.4 47 16-62 451-497 (658)
313 3gve_A YFKN protein; alpha-bet 63.6 4.4 0.00015 39.0 3.4 42 223-264 13-70 (341)
314 1qsa_A Protein (soluble lytic 63.2 32 0.0011 35.8 10.1 123 17-142 217-343 (618)
315 4gq2_M Nucleoporin NUP120; bet 63.1 15 0.00053 40.5 8.1 69 15-83 841-933 (950)
316 3ive_A Nucleotidase; structura 62.9 3.8 0.00013 41.8 2.9 31 399-430 217-248 (509)
317 3spa_A Mtrpol, DNA-directed RN 62.7 50 0.0017 36.6 11.6 82 49-130 128-214 (1134)
318 2cpt_A SKD1 protein, vacuolar 62.3 13 0.00045 29.5 5.4 32 11-42 15-46 (117)
319 1t71_A Phosphatase, conserved 61.9 3 0.0001 38.9 1.8 68 222-294 5-75 (281)
320 3ax2_A Mitochondrial import re 61.8 20 0.00067 25.8 5.7 33 18-50 21-53 (73)
321 4a5x_A MITD1, MIT domain-conta 61.4 14 0.00048 27.5 5.1 31 12-42 14-44 (86)
322 1wy6_A Hypothetical protein ST 60.7 37 0.0013 27.9 7.7 116 19-141 12-148 (172)
323 3jyf_A 2',3'-cyclic nucleotide 60.3 5.8 0.0002 38.1 3.6 42 223-264 10-67 (339)
324 2wdc_A SOXB, sulfur oxidation 60.0 4.2 0.00014 42.1 2.7 36 252-293 126-166 (562)
325 2v6x_A Vacuolar protein sortin 60.0 18 0.0006 26.8 5.5 33 10-42 9-41 (85)
326 3lpz_A GET4 (YOR164C homolog); 57.7 1.3E+02 0.0044 28.5 12.9 29 12-40 33-61 (336)
327 3ax2_A Mitochondrial import re 57.4 32 0.0011 24.7 6.1 35 87-121 22-56 (73)
328 1wfd_A Hypothetical protein 15 56.9 25 0.00085 26.5 5.9 32 11-42 12-43 (93)
329 3t5x_A PCI domain-containing p 56.9 26 0.00088 30.7 7.0 39 10-48 10-48 (203)
330 1wfd_A Hypothetical protein 15 56.0 15 0.00051 27.8 4.6 13 65-77 13-25 (93)
331 3c9f_A 5'-nucleotidase; 2',3'- 55.4 6 0.0002 40.9 2.9 66 223-294 17-107 (557)
332 2crb_A Nuclear receptor bindin 55.4 19 0.00066 27.0 4.8 29 48-76 15-43 (97)
333 2rpa_A Katanin P60 ATPase-cont 54.7 10 0.00036 27.7 3.3 30 14-43 12-41 (78)
334 4b4t_P 26S proteasome regulato 52.3 69 0.0024 31.7 10.1 92 49-142 138-242 (445)
335 1om2_A Protein (mitochondrial 51.0 48 0.0017 25.1 6.5 39 8-46 10-52 (95)
336 2cpt_A SKD1 protein, vacuolar 50.7 18 0.0006 28.7 4.3 13 65-77 16-28 (117)
337 2v6x_A Vacuolar protein sortin 50.6 21 0.00072 26.3 4.6 17 94-110 25-41 (85)
338 2vkj_A TM1634; membrane protei 50.5 39 0.0013 25.2 5.7 32 12-43 51-82 (106)
339 2ijq_A Hypothetical protein; s 50.1 1E+02 0.0035 25.8 9.2 28 17-44 35-62 (161)
340 3esl_A Checkpoint serine/threo 49.8 92 0.0031 27.2 9.1 78 35-113 58-146 (202)
341 4a5x_A MITD1, MIT domain-conta 48.9 21 0.0007 26.6 4.2 18 93-110 27-44 (86)
342 1t70_A Phosphatase; crystal, X 48.4 21 0.00071 32.6 5.0 65 223-294 2-69 (255)
343 2wpv_A GET4, UPF0363 protein Y 48.3 1.8E+02 0.006 27.3 11.7 27 80-106 132-158 (312)
344 3t5v_B Nuclear mRNA export pro 48.2 41 0.0014 33.5 7.6 87 29-115 141-254 (455)
345 2z06_A Putative uncharacterize 46.9 20 0.00067 32.7 4.6 65 223-294 2-69 (252)
346 3t5x_A PCI domain-containing p 43.1 56 0.0019 28.5 6.9 33 49-81 15-47 (203)
347 2cfu_A SDSA1; SDS-hydrolase, l 43.0 53 0.0018 34.5 7.9 51 82-132 449-499 (658)
348 4h1s_A 5'-nucleotidase; hydrol 42.3 11 0.00037 38.6 2.4 37 252-293 54-95 (530)
349 2ijq_A Hypothetical protein; s 35.7 1.7E+02 0.0057 24.5 8.3 61 51-111 35-104 (161)
350 1om2_A Protein (mitochondrial 35.4 53 0.0018 24.9 4.6 31 87-117 25-55 (95)
351 2yhe_A SEC-alkyl sulfatase; hy 41.4 8 0.00027 40.8 0.0 48 16-63 463-510 (668)
352 3re2_A Predicted protein; meni 35.1 98 0.0033 29.7 7.3 63 14-76 255-324 (472)
353 2rpa_A Katanin P60 ATPase-cont 31.9 41 0.0014 24.4 3.4 25 52-76 16-40 (78)
354 3t5v_B Nuclear mRNA export pro 30.4 93 0.0032 30.9 6.9 63 19-81 181-254 (455)
355 2dl1_A Spartin; SPG20, MIT, st 28.6 66 0.0023 25.3 4.2 32 64-110 19-50 (116)
356 3myv_A SUSD superfamily protei 27.9 1.3E+02 0.0044 29.7 7.5 31 81-111 189-219 (454)
357 4b4t_O 26S proteasome regulato 27.7 3.6E+02 0.012 25.9 10.6 89 23-111 85-198 (393)
358 4gq4_A Menin; tumor suppressor 27.0 3.8E+02 0.013 26.2 9.9 76 14-89 262-350 (489)
359 3l80_A Putative uncharacterize 26.5 46 0.0016 29.7 3.7 23 395-417 97-119 (292)
360 3lew_A SUSD-like carbohydrate 26.2 1.4E+02 0.0048 29.8 7.6 32 81-112 202-233 (495)
361 3u84_A Menin; MLL, JUND, ledgf 26.1 1.6E+02 0.0055 28.8 7.2 63 14-76 277-346 (550)
362 3kez_A Putative sugar binding 25.8 1.4E+02 0.0049 29.5 7.5 31 81-111 195-225 (461)
363 2yeq_A Apased, PHOD, alkaline 25.3 94 0.0032 31.5 6.0 24 394-418 358-383 (527)
364 2cwy_A Hypothetical protein TT 24.6 1.9E+02 0.0064 21.6 6.1 27 19-45 6-32 (94)
365 4aez_C MAD3, mitotic spindle c 23.9 3.6E+02 0.012 23.8 8.7 50 65-114 131-182 (223)
366 2wpv_A GET4, UPF0363 protein Y 23.7 4.5E+02 0.015 24.4 12.4 27 114-142 132-158 (312)
367 3lpz_A GET4 (YOR164C homolog); 23.3 4.7E+02 0.016 24.6 13.5 123 18-142 16-160 (336)
368 3mcx_A SUSD superfamily protei 22.7 1.5E+02 0.0052 29.4 6.9 32 81-112 201-232 (477)
369 3esl_A Checkpoint serine/threo 22.6 3.8E+02 0.013 23.2 12.1 73 8-81 74-148 (202)
370 4a1g_A Mitotic checkpoint seri 21.4 3.4E+02 0.012 22.3 7.8 50 65-114 82-133 (152)
371 2e2a_A Protein (enzyme IIA); h 20.4 1.3E+02 0.0045 23.1 4.5 30 13-42 19-48 (105)
372 1wcr_A PTS system, N, N'-diace 20.1 1.4E+02 0.0047 22.9 4.5 29 13-41 17-45 (103)
No 1
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=100.00 E-value=1.4e-90 Score=722.22 Aligned_cols=471 Identities=58% Similarity=0.997 Sum_probs=440.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.++.+.++..+|..+++.|+|++|+++|++|++++|+++.++.++|.+|..+|++++|++.+++|++++|+++.+++++|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCccc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 169 (486)
.+|..+|++++|++.|+++++++|+++.++..++.+......+++++|+..++... ........+++.++|.+.++.+.
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC-STTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc-hhHhhhhhhhccccccccccccc
Confidence 99999999999999999999999999999999999966677777999999877422 23334455888999999999888
Q ss_pred CCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCC
Q 011417 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (486)
Q Consensus 170 ~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~ 249 (486)
...++...++.+++.++..+.+++.++..+|.++.+++.++|+++++..|...++.++||+||++.+|.++|+..+.++.
T Consensus 161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~ 240 (477)
T 1wao_1 161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSE 240 (477)
T ss_dssp GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBT
T ss_pred cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCC
Confidence 76688999999999999999999999999999999999999999999988888999999999999999999999998876
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccc
Q 011417 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~ 329 (486)
.+.|+|+|||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||.+++.++|+..+|..+.++|++||+++
T Consensus 241 ~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 320 (477)
T 1wao_1 241 TNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQ 320 (477)
T ss_dssp TBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEE
T ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEE
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCc
Q 011417 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGN 409 (486)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~ 409 (486)
++++++||||||+++|...++++|+++.|+.+++..++++|+|||||....+|.+++||.|+.||++++++||+++|+ +
T Consensus 321 ~~~~~~~~vHgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~-~ 399 (477)
T 1wao_1 321 CINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNL-D 399 (477)
T ss_dssp EETTTEEECSSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTC-C
T ss_pred EEcCcEEEECCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCC-e
Confidence 999999999999988888999999999999999999999999999999988999999999999999999999999999 9
Q ss_pred eeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCcccchhhh
Q 011417 410 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFL 482 (486)
Q Consensus 410 ~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (486)
+||||||++++||+++++|+|||||||||||+.++|.||+|.|.+++++++|++|+++|+|.++||+||.+++
T Consensus 400 ~iir~H~~~~~g~~~~~~~~~~tvfsa~~y~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (477)
T 1wao_1 400 YIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLL 472 (477)
T ss_dssp EEEECCSCCTEEEEEEGGGTEEEEBCCTTTTSSSCCEEEEEEEETTEEEEEEEEECCCCCCSCCTTCSSCHHH
T ss_pred EEEECCCCCcCCeEEecCCeEEEEeCCcccccCCCccEEEEEEECCCCeEEEEEEeCCCCCCCChhhhhhhhh
Confidence 9999999999999999999999999999999999999999999667899999999999999999999998887
No 2
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=100.00 E-value=1.6e-81 Score=604.88 Aligned_cols=315 Identities=60% Similarity=1.075 Sum_probs=303.7
Q ss_pred CCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHH
Q 011417 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (486)
Q Consensus 163 ~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~ 242 (486)
|.++++....++.+.++++++.+++++.++++++..+|.++.++|.++|+++++..|.+.++.++||+||++.+|.++|+
T Consensus 1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~ 80 (315)
T 3h63_A 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE 80 (315)
T ss_dssp CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence 45667766569999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHh
Q 011417 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (486)
Q Consensus 243 ~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 322 (486)
..++++..+.|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|
T Consensus 81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f 160 (315)
T 3h63_A 81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF 160 (315)
T ss_dssp HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence 99998877679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHH
Q 011417 323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 402 (486)
Q Consensus 323 ~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l 402 (486)
++||++++++++++||||||++|...++++|++++|+.+++++++++|+|||||.+..+|.+++||+|+.||++++++||
T Consensus 161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl 240 (315)
T 3h63_A 161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240 (315)
T ss_dssp TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999998889999999999999999999999
Q ss_pred HHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCcccc
Q 011417 403 QDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYA 478 (486)
Q Consensus 403 ~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (486)
++||+ ++||||||++++||++++++||||||||||||+.++|+||+|.|.++++++.|+||+++|+|.++||+||
T Consensus 241 ~~n~l-~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~~~~~~~~~~~~~~~f~~~~~~~~~p~~~~ 315 (315)
T 3h63_A 241 EENNL-DYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA 315 (315)
T ss_dssp HHHTC-SEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCCEEEEEEETTEEEEEEEEECCCCCCSCCTTTTC
T ss_pred HHcCC-cEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCccEEEEEEECCCCeEeeEEEecCCCCCCCCcCCC
Confidence 99999 9999999999999999999999999999999999999999999965789999999999999999999997
No 3
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-81 Score=608.57 Aligned_cols=320 Identities=48% Similarity=0.863 Sum_probs=293.6
Q ss_pred CcCCCCcccCCCccHHHHHHHH-HHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCC--CCCceEEEccCCCChHHH
Q 011417 161 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL 237 (486)
Q Consensus 161 ~~~~~~~l~~~~l~~~~l~~l~-e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~--~~~~~~v~GDihG~~~~l 237 (486)
+.|.++++.. ++.+.+++++ +.+++++.++++++..+|.++.++|.++|+++++..| .+.++.++|||||++.+|
T Consensus 2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L 79 (335)
T 3icf_A 2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV 79 (335)
T ss_dssp ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence 4567777765 5899999999 9999999999999999999999999999999999988 788899999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHH
Q 011417 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 317 (486)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~ 317 (486)
.++|+..++++..+.|+|||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+||.++|+..+|+.
T Consensus 80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~ 159 (335)
T 3icf_A 80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM 159 (335)
T ss_dssp HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence 99999999987766799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHH
Q 011417 318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADV 397 (486)
Q Consensus 318 ~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~ 397 (486)
+.++|++||+++++++++|||||||++|...++++|+.++|+.+++.+++++|+|||||....+|.+++||+|+.||+++
T Consensus 160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~ 239 (335)
T 3icf_A 160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI 239 (335)
T ss_dssp HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence 99999999999999999999999998889999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHCCCCceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-----------CCceeEEEEec
Q 011417 398 TKRFLQDNSLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-----------TLKPNIVTFAA 466 (486)
Q Consensus 398 ~~~~l~~~~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~-----------~~~~~~~~~~~ 466 (486)
+++||++|++ ++||||||++++||++++++||||||||||||+.++|+||+|.| ++ +++++|+||++
T Consensus 240 ~~~fl~~n~l-~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~~a~~~i-~~~~~~~~~~~~~~~~~~~~~f~~ 317 (335)
T 3icf_A 240 TDRFLRNNKL-RKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHV-VPGHGILQAGRNDDQNLIIETFEA 317 (335)
T ss_dssp HHHHHHHTTC-SEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCEEEEEEE-CTTCCCCBTTTBCCTTEEEEEECC
T ss_pred HHHHHHHCCC-eEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCceEEEEE-ecccccccccccccCceeEEEEec
Confidence 9999999999 99999999999999999999999999999999999999999999 66 88999999999
Q ss_pred cCCCCCCCcccchhhhhc
Q 011417 467 VPHPDVKPMAYANNFLRM 484 (486)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ 484 (486)
+|+|.++||+||.+++.|
T Consensus 318 ~~~~~~~p~~y~~~~~~~ 335 (335)
T 3icf_A 318 VEHPDIKPMAYSNGGFGL 335 (335)
T ss_dssp CCCCSCCTTTTC------
T ss_pred CCCCCCCchhhcccccCC
Confidence 999999999999888765
No 4
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=100.00 E-value=3e-74 Score=559.27 Aligned_cols=289 Identities=41% Similarity=0.748 Sum_probs=273.4
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcc
Q 011417 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (486)
Q Consensus 178 l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lG 257 (486)
++.+++.+++.+.++++++..+|.++.++|.++|+++++..+ +.++||+||++.+|.++|+..+.++. +.|+|||
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~-~~~vfLG 104 (357)
T 3ll8_A 30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFLG 104 (357)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCC-cEEEECC
Confidence 677899999999999999999999999999999999999876 99999999999999999999888765 4699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEE
Q 011417 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (486)
Q Consensus 258 d~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~ 337 (486)
||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|++||++++++++++|
T Consensus 105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~ 184 (357)
T 3ll8_A 105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184 (357)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCC-------CC-CCCCCCceEcCHHHHHHHHHHCCCCc
Q 011417 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSFGADVTKRFLQDNSLGN 409 (486)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~-------~~-~~~rg~~~~fg~~~~~~~l~~~~~~~ 409 (486)
||||| ||...++++|++++|+.+++..+.++|+|||||....+ |. +++||+|+.||++++++||++||+ +
T Consensus 185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l-~ 262 (357)
T 3ll8_A 185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNL-L 262 (357)
T ss_dssp CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTC-S
T ss_pred EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCC-e
Confidence 99999 89999999999999999999999999999999987644 33 678999999999999999999999 9
Q ss_pred eeeecccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCc
Q 011417 410 LVVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPM 475 (486)
Q Consensus 410 ~iir~H~~~~~G~~~~~~~------~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (486)
+||||||++++||++++++ +|||||||||||+.++|+||+|.| +++ .+.|.||+++|+|.++|-
T Consensus 263 ~IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~~a~l~~-~~~-~~~~~~f~~~~hp~~~p~ 332 (357)
T 3ll8_A 263 SILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPN 332 (357)
T ss_dssp EEEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGG
T ss_pred EEEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCccEEEEEE-ECC-cceEEEecCCCCCCcCCC
Confidence 9999999999999999876 799999999999999999999999 444 368999999999999985
No 5
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=100.00 E-value=2.4e-73 Score=544.10 Aligned_cols=282 Identities=39% Similarity=0.805 Sum_probs=266.2
Q ss_pred HHHHHHHHhccc--------chhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCC
Q 011417 178 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (486)
Q Consensus 178 l~~l~e~l~~~~--------~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~ 249 (486)
++++++.+.... .++++++..+|.++.++|.++|+++++..| +.++||+||++.+|.++|+..+.++.
T Consensus 8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 83 (299)
T 3e7a_A 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 83 (299)
T ss_dssp HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence 556666654322 578899999999999999999999999876 99999999999999999999998875
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccc
Q 011417 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (486)
Q Consensus 250 ~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~ 329 (486)
. .|+|||||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|++||+++
T Consensus 84 ~-~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa 162 (299)
T 3e7a_A 84 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 162 (299)
T ss_dssp S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred c-cEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence 4 699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCC-CCCCCCCCCCCceEcCHHHHHHHHHHCCCC
Q 011417 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLG 408 (486)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~-~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~ 408 (486)
++++++||||||| ||...++++|++++|+.+++++++++|+|||||.. ..+|.+++||+|+.||++++++||++|++
T Consensus 163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l- 240 (299)
T 3e7a_A 163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDL- 240 (299)
T ss_dssp EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTC-
T ss_pred EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCC-
Confidence 9999999999999 89999999999999999999999999999999996 46899999999999999999999999999
Q ss_pred ceeeecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecc
Q 011417 409 NLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 467 (486)
Q Consensus 409 ~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 467 (486)
++||||||++++||++++++||||||||||||+.++|.||+|.| ++++.+.|++|++.
T Consensus 241 ~~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~l~~-~~~~~~~~~~~~~~ 298 (299)
T 3e7a_A 241 DLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPA 298 (299)
T ss_dssp SEEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCCEEEEEE-CTTCCEEEEEECCC
T ss_pred eEEEEcCeeeecceEEecCCeEEEEECCcccCCCCCccEEEEEE-CCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999999 99999999999764
No 6
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=100.00 E-value=9.1e-70 Score=546.47 Aligned_cols=292 Identities=40% Similarity=0.725 Sum_probs=273.9
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEc
Q 011417 177 FVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFN 256 (486)
Q Consensus 177 ~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~l 256 (486)
.++.+++.++..+.++++++..+|.++.++|.++|+++++..+ +.++|||||++.+|.++|+..+.++. +.|+||
T Consensus 42 ~~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~~-d~yVFL 116 (521)
T 1aui_A 42 RVDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFL 116 (521)
T ss_dssp CHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEEC
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCCc-ceEEEc
Confidence 3678889999999999999999999999999999999999865 99999999999999999998887764 579999
Q ss_pred ccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEE
Q 011417 257 GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVF 336 (486)
Q Consensus 257 Gd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~ 336 (486)
|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+||..+|+..+|+.+.++|++||++++++++++
T Consensus 117 GDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il 196 (521)
T 1aui_A 117 GDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFL 196 (521)
T ss_dssp SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEE
T ss_pred CCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCC-------CCCC-CCCCCceEcCHHHHHHHHHHCCCC
Q 011417 337 VVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLG 408 (486)
Q Consensus 337 ~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~~~~fg~~~~~~~l~~~~~~ 408 (486)
|||||+ +|...++++|++++|+.+++..++++|+|||||.... +|.+ +.||+|+.||++++++||++||+
T Consensus 197 ~VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l- 274 (521)
T 1aui_A 197 CVHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNL- 274 (521)
T ss_dssp EESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTC-
T ss_pred EECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCC-
Confidence 999999 8999999999999999999999999999999998763 3444 48999999999999999999999
Q ss_pred ceeeecccccccCceEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCccc
Q 011417 409 NLVVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 477 (486)
Q Consensus 409 ~~iir~H~~~~~G~~~~~~~------~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (486)
++||||||++++||++++++ +|||||||||||+.++|.||+|.| +++ .+.|.+|+++|+|.++|.-+
T Consensus 275 ~lIIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~gAvl~i-~~~-~~~~~~f~~~~~p~~~P~~~ 347 (521)
T 1aui_A 275 LSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPNFM 347 (521)
T ss_dssp SEEEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGGGC
T ss_pred cEEEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCceEEEEEE-eCC-cceEEEecCCCCCCcCcccc
Confidence 99999999999999999987 699999999999999999999999 555 68899999999999999643
No 7
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=100.00 E-value=8.2e-69 Score=519.10 Aligned_cols=291 Identities=38% Similarity=0.707 Sum_probs=274.8
Q ss_pred ccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCC
Q 011417 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (486)
Q Consensus 173 l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~ 252 (486)
.+...++++++.++..+.++++++..+|.++.++|.++|+++++..+ ++++||+||++.+|.++|+..+.++.. .
T Consensus 5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~~-~ 79 (309)
T 2ie4_C 5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDT-N 79 (309)
T ss_dssp -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTS-C
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCCC-E
Confidence 34567899999999999999999999999999999999999999765 999999999999999999999887654 5
Q ss_pred eEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhcc-HHHHHHHHHHhhccccccee
Q 011417 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL 331 (486)
Q Consensus 253 ~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~lp~~~~i 331 (486)
|+|+|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+|+.++|+ ..+|+.+.++|++||+++++
T Consensus 80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999995 57999999999999999999
Q ss_pred CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCcee
Q 011417 332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLV 411 (486)
Q Consensus 332 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~i 411 (486)
+++++|||||+ +|...++++|+++.|+.+++..+.++|+|||||....+|.+++||.|+.||++++++||++||+ ++|
T Consensus 160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l-~~i 237 (309)
T 2ie4_C 160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGL-TLV 237 (309)
T ss_dssp TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTC-SEE
T ss_pred cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCC-eEE
Confidence 99999999999 8999999999999999999999999999999999888999999999999999999999999999 999
Q ss_pred eecccccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCC
Q 011417 412 VRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 471 (486)
Q Consensus 412 ir~H~~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 471 (486)
|||||++++||++.++++|||||||||||+.++|.||+|.| +++++++|++|+++|++.
T Consensus 238 ir~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~~a~l~i-~~~~~~~~~~~~~~~~~~ 296 (309)
T 2ie4_C 238 SRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAPRRG 296 (309)
T ss_dssp EECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCEEEEEEE-CTTCCEEEEEECCCC---
T ss_pred EecCcceeCCEEEecCCeEEEEECCcccccCCCCeEEEEEE-CCCCcEeEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999999 889999999999988763
No 8
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=100.00 E-value=1e-66 Score=507.11 Aligned_cols=274 Identities=41% Similarity=0.809 Sum_probs=260.8
Q ss_pred cchhhHHHHHHHHHHHHHHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHH
Q 011417 189 KCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVE 268 (486)
Q Consensus 189 ~~l~~~e~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e 268 (486)
..++++++..+|.++.++|.++|+++++..+ +.++||+||++.+|.++|+..++++.. .|+|+|||||||++|+|
T Consensus 28 ~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~~-~~vflGD~VDRG~~s~e 102 (330)
T 1fjm_A 28 VQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPES-NYLFLGDYVDRGKQSLE 102 (330)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTSS-CEEECSCCSSSSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCcc-eEEeCCCcCCCCCChHH
Confidence 4688999999999999999999999999876 999999999999999999999987654 69999999999999999
Q ss_pred HHHHHHhchhcCCCeEEEeccCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCC
Q 011417 269 VILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGV 348 (486)
Q Consensus 269 ~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~ 348 (486)
|+.+|++||+.+|++|++||||||.+.++..|||.+|+.++|+..+|+.+.+||++||++++++++++|||||+ +|...
T Consensus 103 vl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~~i~~~i~~vHgGl-~p~~~ 181 (330)
T 1fjm_A 103 TICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGL-SPDLQ 181 (330)
T ss_dssp HHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEEEETTTEEEESSCC-CTTCS
T ss_pred HHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceEEEcCcEEEEccCC-CcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred CchhhcccccCCCCCCCCcccccccCCCCCC-CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEecC
Q 011417 349 KLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIEHD 427 (486)
Q Consensus 349 ~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~~~ 427 (486)
++++|+++.|+.++++.++++|+|||||... .+|.++.||.++.||++++.+||+.+++ ++||||||++++||+++++
T Consensus 182 ~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l-~liir~Hq~v~~Gy~~~~~ 260 (330)
T 1fjm_A 182 SMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDL-DLICRAHQVVEDGYEFFAK 260 (330)
T ss_dssp CHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTC-SEEEECCSCCTTSEEEETT
T ss_pred CHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCC-ceEecccccccCCeEEccC
Confidence 9999999999999999999999999999875 5899999999999999999999999999 9999999999999999999
Q ss_pred CeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011417 428 GKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 470 (486)
Q Consensus 428 ~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 470 (486)
++|||||||||||+.++|.||+|.| ++++++.|++|++.+..
T Consensus 261 ~~lvTvfSapnY~~~~~N~ga~l~i-~~~~~~~~~~~~~~~~~ 302 (330)
T 1fjm_A 261 RQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPADKN 302 (330)
T ss_dssp TTEEEEBCCTTCCSSSCCCEEEEEE-CTTCCEEEEEECCCC--
T ss_pred CeEEEEeCCcccccCCCCcEEEEEE-CCCCcEeEEEecCCccc
Confidence 9999999999999999999999999 99999999999887654
No 9
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=100.00 E-value=1.2e-39 Score=322.49 Aligned_cols=230 Identities=21% Similarity=0.282 Sum_probs=183.7
Q ss_pred HhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCC-------CCCCeEEcccccCCCCChHHHHHHHHhchh-
Q 011417 207 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC- 278 (486)
Q Consensus 207 l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~-------~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~- 278 (486)
+..+|+++... .+++++||+||++.+|.++|+..+.++ ..+.++|+|||||||++|.||+.+|++|+.
T Consensus 60 ~~~~~~~~~~~----~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~ 135 (342)
T 2z72_A 60 KQIMPDTYLGI----KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ 135 (342)
T ss_dssp TSCCCSEECCC----CEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred cccCcceecCC----CCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence 56667776654 469999999999999999999887653 346799999999999999999999999986
Q ss_pred --cCCCeEEEeccCCcccccccc-------cCChhhhhhhccHHHHH---HHHHHhhcccccceeCCcEEEEeCcccCCC
Q 011417 279 --MCPSAIYLSRGNHESKSMNKI-------YGFEGEVRSKLSETFVE---LFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 346 (486)
Q Consensus 279 --~~p~~v~~lrGNHE~~~~~~~-------~~~~~e~~~~~~~~~~~---~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~ 346 (486)
.+|.+|+++|||||.+.++.. |++..++.......+|. ...+|++.||++++++ +++|||||+ +|.
T Consensus 136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~ 213 (342)
T 2z72_A 136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE 213 (342)
T ss_dssp HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence 799999999999999988642 22223332222233433 4567889999999988 799999999 665
Q ss_pred CC----CchhhcccccCC-C----CCCCCcccccccCCCCCCCCCCCCCCCC-ceEcCHHHHHHHHHHCCCCceeeeccc
Q 011417 347 GV----KLSDIKTIDRFC-E----PPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFGADVTKRFLQDNSLGNLVVRSHE 416 (486)
Q Consensus 347 ~~----~~~~i~~~~r~~-~----~~~~~~~~~llw~dp~~~~~~~~~~rg~-~~~fg~~~~~~~l~~~~~~~~iir~H~ 416 (486)
.. ++++|+.+.|+. . ++..+.++++||+||... ..||. +..||++++++||+.+++ ++||||||
T Consensus 214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~~-----w~R~~~~~~fg~~~~~~fl~~~~~-~~IV~GHt 287 (342)
T 2z72_A 214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPT-----WYRGYFSETFTEAELDTILQHFNV-NHIVVGHT 287 (342)
T ss_dssp HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTSTT-----TCCGGGSTTCCHHHHHHHHHHHTC-SEEEECSS
T ss_pred hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCCC-----CcCCcccccCChHHHHHHHHHCCC-cEEEECCC
Confidence 53 899999988762 1 112346789999998652 25777 568999999999999999 99999999
Q ss_pred ccccCceEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 011417 417 VKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 453 (486)
Q Consensus 417 ~~~~G~~~~~~~~~~tifsa~~y~~~~~n~~a~~~~~ 453 (486)
+++. +...+++++|||||+++| +|.++++.|+
T Consensus 288 ~~~~-~~~~~~~~~i~Idsg~~~----gg~la~l~i~ 319 (342)
T 2z72_A 288 SQER-VLGLFHNKVIAVDSSIKV----GKSGELLLLE 319 (342)
T ss_dssp CCSS-CEEETTTTEEECCCCGGG----SSCCCEEEEE
T ss_pred cccc-hhhhcCCCEEEEECCCCC----CCcEEEEEEE
Confidence 9865 667789999999999998 4889999993
No 10
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=99.97 E-value=4.3e-32 Score=260.35 Aligned_cols=195 Identities=20% Similarity=0.309 Sum_probs=159.3
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
+++++||+||++.+|.++++..+.++..+.++|+|||||||++|.||+.+|+++ |..++++|||||.+.++..+||
T Consensus 2 ~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g~ 77 (280)
T 2dfj_A 2 ATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAGI 77 (280)
T ss_dssp CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTTS
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcCC
Confidence 489999999999999999999888656678999999999999999999999988 4689999999999999988888
Q ss_pred hhhhhhhc-----cHHHHHHHHHHhhcccccceeCC-cEEEEeCcccCCCCCCchhhcccccCCC----CCCCCcccccc
Q 011417 303 EGEVRSKL-----SETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCELL 372 (486)
Q Consensus 303 ~~e~~~~~-----~~~~~~~~~~~~~~lp~~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~ll 372 (486)
........ .......+.+|++.||+++.+++ +++|||||+ +|.. +++++..+.|+.+ .++.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~l 155 (280)
T 2dfj_A 78 SRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDAM 155 (280)
T ss_dssp SCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred cccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHHh
Confidence 65321111 11234567789999999998887 999999999 7766 7999888877642 34555688999
Q ss_pred cCCCCCCCCCCCCCCCCc-eEcCHHH--HHHHHHHCC-CCceeeecc-cccccCceEec
Q 011417 373 WSDPQPLPGRGPSKRGVG-LSFGADV--TKRFLQDNS-LGNLVVRSH-EVKDEGYEIEH 426 (486)
Q Consensus 373 w~dp~~~~~~~~~~rg~~-~~fg~~~--~~~~l~~~~-~~~~iir~H-~~~~~G~~~~~ 426 (486)
|+||. ..|.++.||.+ +.||.++ ..+||+.+| + ++++|+| |.+++||...+
T Consensus 156 ~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l-~~~~r~~~~~~~~g~~~w~ 211 (280)
T 2dfj_A 156 YGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQL-DMYSKESPEEAPAPLKPWF 211 (280)
T ss_dssp TCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEE-ESSCCSCGGGCCSSCEEGG
T ss_pred cCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcE-eEEeccChhhcCccccchh
Confidence 99985 57889999998 6899888 477888888 7 7788888 66777776654
No 11
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.87 E-value=2.3e-22 Score=191.59 Aligned_cols=220 Identities=17% Similarity=0.203 Sum_probs=140.8
Q ss_pred HHhcCCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEE
Q 011417 206 MLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIY 285 (486)
Q Consensus 206 ~l~~ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~ 285 (486)
.+.++|++..+.. +++++||+||++..|.++++..+..+..+.++|+||+||||+.+.|++.+|..+ .|+
T Consensus 7 ~~~~~~~l~~~~~----~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~ 76 (262)
T 2qjc_A 7 GYANVVTLPNVTG----RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAY 76 (262)
T ss_dssp -CCCEEECTTCCS----CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCE
T ss_pred ccCChhhhcCCCC----eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCE
Confidence 3445555655433 599999999999999999998876654467999999999999999999998764 488
Q ss_pred EeccCCcccccccccCChhh-hhhhcc---------HHHHHHHHHHhhcccccceeC-CcEEEEeCcccCCCCC----Cc
Q 011417 286 LSRGNHESKSMNKIYGFEGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KL 350 (486)
Q Consensus 286 ~lrGNHE~~~~~~~~~~~~e-~~~~~~---------~~~~~~~~~~~~~lp~~~~i~-~~~~~vHgGi~~~~~~----~~ 350 (486)
+++||||.+.++..+++..+ |..+++ ..+.....+|++.||+.+.++ .+++|||||+ +|... +.
T Consensus 77 ~v~GNHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~ 155 (262)
T 2qjc_A 77 SVLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYE 155 (262)
T ss_dssp ECCCHHHHHHHHHHHCC-------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCH
T ss_pred EEeCcChHHHHhhhcCCCccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCH
Confidence 99999999988877676543 333332 223456678999999999886 5899999999 55431 12
Q ss_pred hhh---cccccCCCCCCCCcccccccCCCCCCC--CCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceEe
Q 011417 351 SDI---KTIDRFCEPPEEGLMCELLWSDPQPLP--GRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEIE 425 (486)
Q Consensus 351 ~~i---~~~~r~~~~~~~~~~~~llw~dp~~~~--~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~~ 425 (486)
+++ +.+.++.+.+..+. .++|+||.... .|..+. .+. +.||-||+.+. ++...
T Consensus 156 ~~l~~ir~~~~~~~~~~~G~--~~~~~d~~~~~~~~w~~~~------------------~g~-~~vvfGHt~~~-~~~~~ 213 (262)
T 2qjc_A 156 DEVTTMRNLIEKEQEATGGV--TLTATEETNDGGKPWASMW------------------RGP-ETVVFGHDARR-GLQEQ 213 (262)
T ss_dssp HHHHHCCEEEEC-------C--CEEEESCSTTCCEEGGGGC------------------CCS-SEEEECCCGGG-CCBCT
T ss_pred HHHhhhhhcccccccCCCCc--cccccCCCCcCCCChhhcc------------------CCC-CEEEECCCccc-ccccc
Confidence 233 22222211111222 47899984321 222221 257 88999999874 55432
Q ss_pred cCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011417 426 HDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 466 (486)
Q Consensus 426 ~~~~~~tifsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 466 (486)
.++.++.|-+..-| ++.=+++.| +. . ++++..+
T Consensus 214 ~~~~~i~IDtG~~~----gG~Lt~l~l-~~-~--~~~~~~~ 246 (262)
T 2qjc_A 214 YKPLAIGLDSRCVY----GGRLSAAVF-PG-G--CIISVPG 246 (262)
T ss_dssp TTTTEEECCCBGGG----TSEEEEEEE-TT-T--EEEEEEC
T ss_pred CCCCEEEeeCcccc----CCeeEEEEE-cC-C--cEEEEec
Confidence 22267777665533 345566778 33 2 4555544
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.84 E-value=6.7e-20 Score=154.65 Aligned_cols=121 Identities=30% Similarity=0.547 Sum_probs=115.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+.-+|+.+.++.++|+.+++.|+|++|+..|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|+++.+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+.+|.++..+|++++|++.|+++++++|++++++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888764
No 13
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.80 E-value=1.4e-19 Score=168.15 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=116.1
Q ss_pred CCCCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccc
Q 011417 219 PDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK 298 (486)
Q Consensus 219 ~~~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~ 298 (486)
+...++.++||+||++.+|.++++..+.++..+.++++||+||||+++.|++.+|.. ..|++++||||.+.++.
T Consensus 10 ~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNhd~~~~~~ 83 (221)
T 1g5b_A 10 SKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNHEQMMIDG 83 (221)
T ss_dssp GGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCcHHHHHhh
Confidence 344679999999999999999999987765567799999999999999999887643 36999999999887765
Q ss_pred ccCChhh--h-------hhh---ccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCCCCC
Q 011417 299 IYGFEGE--V-------RSK---LSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPP 363 (486)
Q Consensus 299 ~~~~~~e--~-------~~~---~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~ 363 (486)
.+++... + ... ....+...+.+||+.||..+.+ +.+++|||||+| +... ...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~-~~~~------~~~~~~--- 153 (221)
T 1g5b_A 84 LSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYP-FDEY------EFGKPV--- 153 (221)
T ss_dssp HSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCC-SSBC------CTTCCC---
T ss_pred hccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCC-hhhc------ccCCCc---
Confidence 4332211 1 001 1235678888999999999877 578999999983 3211 111111
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHH-----HCCCCceeeecccccccCc
Q 011417 364 EEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ-----DNSLGNLVVRSHEVKDEGY 422 (486)
Q Consensus 364 ~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~-----~~~~~~~iir~H~~~~~G~ 422 (486)
...+++|++|. ..+..+ ..+. +.+|-||+.+. ++
T Consensus 154 ---~~~~~lw~~~~--------------------~~~~~~~~~~~~~~~-~~vv~GHth~~-~~ 192 (221)
T 1g5b_A 154 ---DHQQVIWNRER--------------------ISNSQNGIVKEIKGA-DTFIFGHTPAV-KP 192 (221)
T ss_dssp ---CHHHHHHCCHH--------------------HHHHHTTCCCCCBTS-SEEEECSSCCS-SC
T ss_pred ---cccccccCchh--------------------hhhhccccCCcccCC-CEEEECCCCCc-cc
Confidence 13578897642 222222 3567 89999999874 44
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=6.6e-18 Score=182.78 Aligned_cols=145 Identities=23% Similarity=0.334 Sum_probs=135.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...|++++++.++|.++.++|++++|+++|++|++++|+++.++.++|.+|.++|++++|++.|++|++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+|.++..+|++++|++.|++|++++|++.+++.+++.++..+++ +++|+..++ ++++++|++..+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~------------~Al~l~P~~~~a 147 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR------------TALKLKPDFPDA 147 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHH
Confidence 99999999999999999999999999999999999999977776 889998888 899998876443
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.76 E-value=8.8e-18 Score=146.01 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=115.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
...+|+.+..++.+|.+|++.|+|++|+++|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|+++.+++
T Consensus 24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 87 RRGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
.+|.++...|++++|.+. +++|++++|+++.++..++.++...|
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999999887776 59999999999999988888775433
No 16
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=2.4e-17 Score=143.44 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=107.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
...-+|+++.+++.+|..+++.|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+.+|+++++++|+++.+|
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999875
No 17
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.4e-17 Score=152.99 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
.++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...+.....++...+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987776655555544443
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=5.8e-18 Score=156.55 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|.++.+++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++..+ |++++|+..|+++++++|+++.++..++.++...++ +++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 142 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK 142 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 99999 999999999999999999999999999999977666 788888888
No 19
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=6.6e-17 Score=135.38 Aligned_cols=118 Identities=27% Similarity=0.433 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+..+..+|..++..|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 011417 91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA 128 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 128 (486)
++..+|++++|+..|+++++++ |+++.++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999888887643
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.7e-17 Score=148.34 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
+++.+++.+|.++...|+|++|+..|+++++++|+++.++..+|.+|..+|++++|+..+++++..+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+...+++++|...++++++.+|++..++..++.++..+++ +++|+..++ ++++++|...
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~ 141 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE------------KTISIKPGFI 141 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH------------HHHHhcchhh
Confidence 9999999999999999999999999999999999977666 889988888 7888887653
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=4.9e-17 Score=150.26 Aligned_cols=142 Identities=19% Similarity=0.219 Sum_probs=134.0
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIE 76 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~ 76 (486)
..+|+.+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+ |++++|+..++++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccc
Q 011417 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQS 156 (486)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~ 156 (486)
++|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++...++ +++|+..++ ++
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a 177 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA------------KA 177 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH------------HH
Confidence 999999999999999999999999999999999999 999999999999977776 899988888 78
Q ss_pred cccCCcCC
Q 011417 157 IEVEPQYS 164 (486)
Q Consensus 157 l~~~~~~~ 164 (486)
++++|...
T Consensus 178 l~~~P~~~ 185 (217)
T 2pl2_A 178 LEQAPKDL 185 (217)
T ss_dssp HHHSTTCH
T ss_pred HHhCCCCh
Confidence 88888654
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=2.2e-16 Score=136.83 Aligned_cols=123 Identities=17% Similarity=0.260 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.-+|+.+.+++.+|..++..|++++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|+++++++|+++.+++.
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
+|.++..+|++++|+..|+++++++|+++........+...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999887655555554444
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=3.3e-16 Score=134.38 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=117.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
....+|+.+..++.+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|++++.++|+++.++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+.+|.++..+|++++|+..|+++++++|+++........+...++.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998877777766665554
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=1.9e-16 Score=159.13 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=136.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 85 (486)
...+|+.+.++..+|.++...|++++|+..|+++|+++|++..+|.++|.++..+|+ +++|+.+|+++++++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456789999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
+++|.++..+|++++|+..|++|++++|++..+|..++.++..+++ +++|+..++ ++++++|.+..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~------------~al~l~P~~~~ 235 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD------------QLLKEDVRNNS 235 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH------------HHHHHCTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH------------HHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999988776 566776666 99999997654
Q ss_pred Cc
Q 011417 166 AR 167 (486)
Q Consensus 166 ~~ 167 (486)
+.
T Consensus 236 a~ 237 (382)
T 2h6f_A 236 VW 237 (382)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.71 E-value=3.4e-16 Score=137.59 Aligned_cols=120 Identities=31% Similarity=0.432 Sum_probs=113.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
..+++..+..++.+|..++..|+|++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++..+|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.+|.++..+|++++|+.+|+++++++|+++.++...+...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999766665554
No 26
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=2.6e-16 Score=132.63 Aligned_cols=114 Identities=26% Similarity=0.383 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------- 81 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------- 81 (486)
..++.+.++.++|+.+++.|+|++|+.+|++|++++|+++.+|.++|.+|..+|++++|+..++++++++|++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 3467788999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
+.+++++|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 358999999999999999999999999999885 55544443
No 27
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.70 E-value=7e-17 Score=139.80 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~- 77 (486)
...+..+..+|+.++..|+|++|+..|++||+++|+ +.. +|.++|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 78 ------DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 78 ------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+|++..+| +++|.++..+|++++|+.+|++|++++|++..+...+..+......
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998877777766655443
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=7e-18 Score=146.66 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=115.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (486)
.+|..+...|++++|++.+++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcC-cccccccccccccccccccCCcC
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV-PESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~-~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++|+.+|+++++++|++++++..++.++...++ +++|... ++ ++++++|..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~------------~al~l~P~~ 133 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVE------------RAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHH------------HHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHH------------HHHHhCcCC
Confidence 999999999999999999999999999977665 3444332 34 788888865
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=3e-16 Score=140.19 Aligned_cols=141 Identities=21% Similarity=0.284 Sum_probs=133.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+|+++.++..+|.++...|++++|+..+++++...|+++.++..+|.++...+++++|...++++++++|++..++..+
T Consensus 34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l 113 (184)
T 3vtx_A 34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL 113 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
|.++..+|++++|++.|+++++++|+++.++..+|.++..+++ +++|+..++ ++++++|..
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 174 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK------------KALEKEEKK 174 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTTHHH
T ss_pred HHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhCCccC
Confidence 9999999999999999999999999999999999999977766 899999888 778777753
No 30
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=3e-16 Score=145.40 Aligned_cols=136 Identities=22% Similarity=0.267 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
++..++.+|..++..|+|++|+..|+++++++| .+..+++++|.++..+|++++|+..++++++.+|++..+++.+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 357999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
+..+|++++|+..|+++++.+|+++ .++..++.++...++ +++|+..++ ++++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~------------~al~~~p~ 149 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK------------HATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSSCH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH------------HHHhcCCC
Confidence 9999999999999999999999999 446666666644444 677777776 88888887
No 31
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=3.7e-16 Score=137.06 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=113.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ 69 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 69 (486)
.+....+..+..+|+.+++.|+|++|+..|++++++ +|....+|.++|.+|..+|++++|+.
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345567889999999999999999999999999999 77788999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhh
Q 011417 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK 131 (486)
Q Consensus 70 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~l~~ 131 (486)
.++++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++ .+...+..+...++.
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 677788888766554
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=1.2e-16 Score=172.97 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+.+.++.++|.++.+.|++++|+++|++|++++|+++.+|.++|.+|..+|++++|++.|++|++++|+++.+|+++|
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg 118 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|..+|++++|++.|++|++++|+++.++.+++.++..+++ +++|...++
T Consensus 119 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--~~~A~~~~~ 169 (723)
T 4gyw_A 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--WTDYDERMK 169 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc--HHHHHHHHH
Confidence 999999999999999999999999999999999999977776 566655554
No 33
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.68 E-value=2e-15 Score=131.70 Aligned_cols=135 Identities=53% Similarity=0.854 Sum_probs=126.5
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.+..+.+..+..+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+..++++++.+|+++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++..+|++++|+.+|+++++.+|+++.++..++.+......+++++|+..++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999988888766677777999998877
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-15 Score=127.44 Aligned_cols=127 Identities=31% Similarity=0.475 Sum_probs=120.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 011417 4 METENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (486)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (486)
.......+..+.+++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 85 (133)
T 2lni_A 6 HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK 85 (133)
T ss_dssp CTTCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
+++.+|.++..+|++++|++.|+++++.+|++..++..++.++...+
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999886544
No 35
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.67 E-value=6.2e-15 Score=122.51 Aligned_cols=126 Identities=36% Similarity=0.578 Sum_probs=119.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
....++..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+.+|.++...|++++|+..|+++++.+|+++.++..++.++..+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999877664
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=3.4e-16 Score=157.33 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=129.7
Q ss_pred CcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
-+|+.+.+|..+|.++...|+ +++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|++
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~ 205 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence 367788999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
+|.++..+|++++|+.+|+++++++|++..+|..++.++..++.. .++|+ ...+...+.++++++|.+..
T Consensus 206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~-~~eA~-------~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-NDRAV-------LEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-CSHHH-------HHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-chHHH-------HHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999999999999999773321 23442 00112333478888887643
No 37
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=4.9e-15 Score=146.39 Aligned_cols=127 Identities=29% Similarity=0.450 Sum_probs=120.7
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK 73 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (486)
..|+.+.++..+|..++..|+|++|+..|++|++++|++ ..+|.++|.+|..+|++++|+..|++
T Consensus 142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHh
Q 011417 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEA 137 (486)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A 137 (486)
+++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++ +++|
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~--~~~a 283 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR--QLAR 283 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999999999999999999999999999999999988776 4554
No 38
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=9.9e-17 Score=139.54 Aligned_cols=119 Identities=13% Similarity=-0.035 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 30 YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 30 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
+-.+-..++++++++|+++.+++.+|.++.+.|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33344567888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 110 KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 110 ~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
+++|+++.+++.++.++..+++ +++|+..++ +++++.|+
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~------------~al~l~~~ 136 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE------------LVIQHSND 136 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCCC
T ss_pred hhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCC
Confidence 9999999999999999987777 899999888 77777664
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.63 E-value=1.9e-15 Score=139.87 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG 84 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~ 84 (486)
.+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..++++++++|+++ .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHhhcCcc-------------ccccccc
Q 011417 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAVPE-------------SERHSVA 149 (486)
Q Consensus 85 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~l~~~~~~~A~~~~~-------------~~~~~~a 149 (486)
|+.+|.++..+|++++|++.|+++++++|+ ++.++..++.++...+....+++..... .+.+..|
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 199 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKA 199 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999998777754455444321 1222344
Q ss_pred ccccccccccCCcC
Q 011417 150 DSIDYQSIEVEPQY 163 (486)
Q Consensus 150 ~~~~~~~l~~~~~~ 163 (486)
...+.++++++|..
T Consensus 200 ~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 200 VDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCCC
Confidence 44455666666643
No 40
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.63 E-value=2.4e-15 Score=141.82 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=127.5
Q ss_pred CCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccccc
Q 011417 221 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (486)
Q Consensus 221 ~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 300 (486)
.+++.++||+||++..+..+++... ..+.++++||++|+|+++.|++.+|..++ .+++++||||........
T Consensus 3 ~mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~ 74 (246)
T 3rqz_A 3 AMRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLA-----PNISVIGNHDWACIGRLS 74 (246)
T ss_dssp CCCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHC-----SSEECCCHHHHHHTCCCC
T ss_pred CcEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcC-----CCEEEeCchHHHHhccCC
Confidence 3569999999999999999998876 34579999999999999999999998885 278999999988765432
Q ss_pred C--Chh---hhhhhccHHHHHHHHHHhhcccccceeCCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCC
Q 011417 301 G--FEG---EVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSD 375 (486)
Q Consensus 301 ~--~~~---e~~~~~~~~~~~~~~~~~~~lp~~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~d 375 (486)
. +.. .........+.....+|++.||.....+ +++++||++.++. |
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~~~~--------------------------~-- 125 (246)
T 3rqz_A 75 LDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPRHPI--------------------------W-- 125 (246)
T ss_dssp CC--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSSSTT--------------------------T--
T ss_pred ccccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcCCcc--------------------------c--
Confidence 2 111 1111112344456678999999987755 8999999772210 0
Q ss_pred CCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceE--------------------ecCCeEEEEec
Q 011417 376 PQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEI--------------------EHDGKLITVFS 435 (486)
Q Consensus 376 p~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~--------------------~~~~~~~tifs 435 (486)
++.+....+.+.++..+. +++|-||+-.+..+.. ..+..++..=|
T Consensus 126 --------------~~~~~~~~~~~~l~~~~~-~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGS 190 (246)
T 3rqz_A 126 --------------EYIYNARIAALNFPAFDT-PLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGA 190 (246)
T ss_dssp --------------CCCCSHHHHHHHGGGCCS-SEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECC
T ss_pred --------------cccCChHHHHHHHhccCC-CEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCc
Confidence 011234567788899999 9999999976433321 11334455545
Q ss_pred CCCCCCCCCCeEEEEEEecCCCceeE
Q 011417 436 APNYCDQMGNKGAFIRFEAPTLKPNI 461 (486)
Q Consensus 436 a~~y~~~~~n~~a~~~~~~~~~~~~~ 461 (486)
.-.--+ ....+++++++.++.+++|
T Consensus 191 VG~Prd-g~p~A~Y~i~d~~~~~v~~ 215 (246)
T 3rqz_A 191 VGQPRD-GDPRASYAIFEPDAQRVTF 215 (246)
T ss_dssp SSCCCS-SCCSEEEEEEEGGGTEEEE
T ss_pred cCCCCC-cCCcceEEEEECCCCEEEE
Confidence 422111 3456899999544444444
No 41
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=6.6e-15 Score=124.45 Aligned_cols=121 Identities=30% Similarity=0.437 Sum_probs=112.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
++..+..++.+|..++..|+|++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHh
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVK 130 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~l~ 130 (486)
.++..+|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 7777777777764443
No 42
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=2e-14 Score=117.19 Aligned_cols=115 Identities=31% Similarity=0.544 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
+.+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+..+|++++|+..++++++.+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998888765
No 43
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.62 E-value=1.3e-15 Score=164.76 Aligned_cols=146 Identities=15% Similarity=0.026 Sum_probs=136.1
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
..+|+.+.+++.+|..++..|++++|+..|+++++.+|+++.+|+++|.+|..+|++++|++.|+++++++|+++.++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (486)
+|.++..+|++++ ++.|++|++++|+++.++++++.++..+++ +++|+..++ ++++++|.+..+.
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~ 571 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLD------------EVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------TSCTTSTTHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHH------------hhcccCcccHHHH
Confidence 9999999999999 999999999999999999999999977766 889998888 8888888765554
Q ss_pred c
Q 011417 168 I 168 (486)
Q Consensus 168 l 168 (486)
.
T Consensus 572 ~ 572 (681)
T 2pzi_A 572 L 572 (681)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.62 E-value=3.4e-15 Score=124.57 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
...++.+|..+++.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
.+|++++|+..|+++++.+|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 45
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.62 E-value=1.3e-15 Score=128.08 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=103.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 39 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
++..++|+.+.++.++|.+|++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+..+|.++..+++ +++|+..++ ++++++|...
T Consensus 84 ~~~lg~~~~~~~~--~~~A~~~~~------------~al~l~P~~~ 115 (126)
T 4gco_A 84 YIRKAACLVAMRE--WSKAQRAYE------------DALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCH
T ss_pred HHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCcCCH
Confidence 9999999977776 889998888 8898888764
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=1.9e-14 Score=130.45 Aligned_cols=123 Identities=28% Similarity=0.401 Sum_probs=117.1
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDAS 72 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~ 72 (486)
+.+..+..+..+|..++..|+|++|+..|++++++.|.++ .++.++|.+|..+|++++|+.+++
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456788899999999999999999999999999999887 899999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
++++++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977765
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=157.22 Aligned_cols=133 Identities=12% Similarity=0.022 Sum_probs=110.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
..+..+..++.+|..+...|+| ++|+.+|+++++++|+++.+|..+|.+|..+|++++|+.+|+++++++|+ ..++..
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 4556678888888888888888 88888888888888888888888888888888888888888888888888 688888
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hh--HHHHHhhcCcc
Q 011417 88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV----KK--LKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l----~~--~~~~~A~~~~~ 142 (486)
+|.++..+ |++++|++.|+++++++|+++.++..++.++... ++ +++++|+..++
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 88888888 8888888888888888888888888888888666 11 33677777666
No 48
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-14 Score=122.22 Aligned_cols=120 Identities=34% Similarity=0.498 Sum_probs=113.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK 83 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 83 (486)
...++..+..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.+|...|++++|+..++++++.+|+++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 34456778999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+++.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777764
No 49
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.60 E-value=5.6e-14 Score=115.59 Aligned_cols=117 Identities=32% Similarity=0.536 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
.+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..+++.+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
...|++++|+..|+++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998887543
No 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=1.6e-14 Score=148.79 Aligned_cols=124 Identities=30% Similarity=0.470 Sum_probs=115.0
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK 73 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 73 (486)
..|+.+.++..+|..+++.|+|++|+..|++|++++|.+ ..+|.++|.+|.++|++++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 356788899999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
+++++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888763
No 51
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.59 E-value=3.4e-14 Score=134.34 Aligned_cols=198 Identities=14% Similarity=0.083 Sum_probs=124.7
Q ss_pred ceEEEccCCCChHHHHHHHHHcC---CCC-CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK 298 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~---~~~-~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~ 298 (486)
++.++||+||++..+.++++... ..+ ..+.++++||++|+|+.+.+++.+|..++... .|++++||||......
T Consensus 3 ~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~~ 80 (252)
T 1nnw_A 3 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAMS 80 (252)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHHS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhcc
Confidence 58999999999999998887654 221 34579999999999999999999998876433 4999999999876542
Q ss_pred ccCCh--hh------------hhhhccHHHHHHHHHHhhccccccee--CC-cEEEEeCcccCCCCCCchhhcccccCCC
Q 011417 299 IYGFE--GE------------VRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE 361 (486)
Q Consensus 299 ~~~~~--~e------------~~~~~~~~~~~~~~~~~~~lp~~~~i--~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~ 361 (486)
...+. .. ........+.....+|++.||....+ ++ +++++||++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p~~~~--------------- 145 (252)
T 1nnw_A 81 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPF--------------- 145 (252)
T ss_dssp CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCSSCTT---------------
T ss_pred ccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCCCCCc---------------
Confidence 21111 00 00011223445566899999987665 33 8999999761110
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHC-CCCceeeecccccccCceEecCCeEEEEecCCCCC
Q 011417 362 PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLGNLVVRSHEVKDEGYEIEHDGKLITVFSAPNYC 440 (486)
Q Consensus 362 ~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~-~~~~~iir~H~~~~~G~~~~~~~~~~tifsa~~y~ 440 (486)
.+.+|.+ -+.+.+.++++.. +. +++|-||+....... .++.++--=.|..+.
T Consensus 146 -------~~~~~~~-----------------~~~~~l~~~~~~~~~~-~~vi~GHtH~~~~~~--~~~~~~in~Gs~~~~ 198 (252)
T 1nnw_A 146 -------DGEVLAE-----------------QPTSYYEAIMRPVKDY-EMLIVASPMYPVDAM--TRYGRVVCPGSVGFP 198 (252)
T ss_dssp -------TCCCCSS-----------------CCHHHHHHHHGGGTTS-SEEEESTTCSEEEEE--ETTEEEEEECCSSSC
T ss_pred -------ccccCCC-----------------CCHHHHHHHHhcCCCC-CEEEECCccccceEe--cCCeEEEECCCccCC
Confidence 0011110 0235677888887 99 999999998754433 355432111122211
Q ss_pred CCCCCeEEEEEEecCCCceeEEEE
Q 011417 441 DQMGNKGAFIRFEAPTLKPNIVTF 464 (486)
Q Consensus 441 ~~~~n~~a~~~~~~~~~~~~~~~~ 464 (486)
-.....+++++++.++.++++...
T Consensus 199 ~~~~~~~~y~il~~~~~~v~~~~v 222 (252)
T 1nnw_A 199 PGKEHKATFALVDVDTLKPKFIEV 222 (252)
T ss_dssp SSSSCCEEEEEEETTTCCEEEEEE
T ss_pred CCCCCcceEEEEECCCCeEEEEEe
Confidence 111235788888555566665544
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=3.4e-14 Score=125.44 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=107.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.|..+.++..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 44556778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|+..++++++..|+++.++..++.++...++ +++|...++
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 168 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK 168 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 888888888888888888888888888888888888866554 677777766
No 53
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=3.4e-14 Score=118.27 Aligned_cols=126 Identities=29% Similarity=0.482 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
.+++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 95 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.|++++|++.++++++..|+++.++..++.++...++ +++|...++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 9999999999999999999999999999999865554 788887776
No 54
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.58 E-value=3.9e-14 Score=134.09 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=120.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---H
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---P 82 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 82 (486)
.++..+..++.+|..++..|+|++|+..|+++++.+|++ +.+++.+|.+|..+|++++|+..|+++++..|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 355678899999999999999999999999999999999 9999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHhhHHHHHh
Q 011417 83 KGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAA-----------------QKVKECEKAVKKLKFEEA 137 (486)
Q Consensus 83 ~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~l~~~~~~~A 137 (486)
.+++.+|.++.. +|++++|+..|+++++..|+++.+. +.++.++...++ +++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHH
Confidence 789999999999 9999999999999999999987766 444555543333 5555
Q ss_pred hcCcccccccccccccccccccCCcC
Q 011417 138 IAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+..++ +++...|..
T Consensus 168 ~~~~~------------~~l~~~p~~ 181 (261)
T 3qky_A 168 AVTYE------------AVFDAYPDT 181 (261)
T ss_dssp HHHHH------------HHHHHCTTS
T ss_pred HHHHH------------HHHHHCCCC
Confidence 55555 888777753
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=2.7e-15 Score=155.43 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=115.5
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 105 (486)
.+++++|+..++++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|+.+|.+|..+|++++|+++|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45688999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHH---------hhHHHHHhhcCccc------------------------------ccc
Q 011417 106 QQVKKLSPNDPDAAQKVKECEKAV---------KKLKFEEAIAVPES------------------------------ERH 146 (486)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~l---------~~~~~~~A~~~~~~------------------------------~~~ 146 (486)
+++++++|+ ..++..++.++..+ ++ +++|+..++. +++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999999999 79999999999665 44 6666655432 556
Q ss_pred cccccccccccccCC
Q 011417 147 SVADSIDYQSIEVEP 161 (486)
Q Consensus 147 ~~a~~~~~~~l~~~~ 161 (486)
++|...+.++++++|
T Consensus 238 ~~A~~~~~~al~~~p 252 (474)
T 4abn_A 238 QQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHhCC
Confidence 667777777777666
No 56
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.58 E-value=5.6e-16 Score=155.32 Aligned_cols=130 Identities=22% Similarity=0.142 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+.++..+|..+...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++..+|++++|++.|+++++.+|++..++..++.++...++ +++|+..++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 193 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFE 193 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 55555555555555555555555555555555555533333 444444443
No 57
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.57 E-value=7e-14 Score=116.15 Aligned_cols=120 Identities=28% Similarity=0.443 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 83 (486)
++.+..++.+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..+++++...|++ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999998877 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+++.+|.++...|++++|+++|+++++..| ++.....++.+...+++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68888888888876654
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1.8e-13 Score=120.66 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
....+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|++.++++++..|+++.++..++.++...++ +++|+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~ 134 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK 134 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 999999999999999999999999999999999999966665 888888888
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=5.1e-14 Score=128.47 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
..+..++.+|..++..|++++|+..|++++ +| ++.++.++|.+|...|++++|+..|+++++++|+++.+++.+|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 456678999999999999999999999995 44 789999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhhHHHHHhhcCccccccccccccccc
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~ 155 (486)
+..+|++++|++.|+++++..|++. .++..++.++...++ +++|+..++ +
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~ 146 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA------------L 146 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH------------H
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH------------H
Confidence 9999999999999999999998877 899999999977665 888888888 7
Q ss_pred ccccCCcC
Q 011417 156 SIEVEPQY 163 (486)
Q Consensus 156 ~l~~~~~~ 163 (486)
++++.|..
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 77777754
No 60
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.55 E-value=9.5e-14 Score=115.91 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 88 (486)
.+++.+|..++..|+|++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
|.++..+|++++|+..|+++++..|+++.+......+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999999999998776665554
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=4.2e-14 Score=149.65 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=131.5
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
..+|+.+.++..+|..+...|++++|++.|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++..+++.
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l---~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+|.++..+|++++|++.|+++++.+|+++.++..++.++..+ ++ +++|...++ ++++.+|...
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~------------~al~~~p~~~ 162 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR------------AAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH------------HHHHHTCCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH------------HHHhcCCccc
Confidence 999999999999999999999999999999999999999777 54 788888877 6777777654
Q ss_pred CC
Q 011417 165 GA 166 (486)
Q Consensus 165 ~~ 166 (486)
.+
T Consensus 163 ~~ 164 (568)
T 2vsy_A 163 EP 164 (568)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 62
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.55 E-value=7e-14 Score=139.92 Aligned_cols=126 Identities=21% Similarity=0.447 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.+.+..+..+|..+++.|+|++|+..|++|++ .+|.+..+|.++|.+|.++|++++|+.+++++
T Consensus 220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 45677899999999999999999999999999 78888999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhh
Q 011417 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAI 138 (486)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~ 138 (486)
++++|+++.+++.+|.+|..+|++++|+..|++|++++|+++.++..++.++..+++ ++++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~--~~~a~ 361 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA--QKDKE 361 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 999999999999999999999999999999999999999999999999999987776 44443
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=8.9e-14 Score=127.05 Aligned_cols=133 Identities=19% Similarity=0.144 Sum_probs=123.2
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
...|..+.++..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++... |++++|+..++++++ ..|.+..++..++.++...++ +++|+..++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 137 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK 137 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999 999999999999999 667778899999999966665 788888887
No 64
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=2.2e-14 Score=143.67 Aligned_cols=131 Identities=17% Similarity=0.146 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+.+.++..+|..+...|++++|+..|+++++++|++..++.++|.++...|++++|+..++++++++|+++.++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 46667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|++.|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 295 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--VAEAEDCYN 295 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 888888888888888888888888888888888888866665 666666554
No 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=5.5e-15 Score=127.97 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 33 AIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 33 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
+-..|+++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 113 PNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 113 p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
|+++.+++.++.++..+++ +++|+..++ +++++.|.
T Consensus 86 p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~ 121 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGE--LAEAESGLF------------LAQELIAN 121 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTT
T ss_pred CCCchHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHCcC
Confidence 9999999999999977776 789988888 77777664
No 66
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.54 E-value=3.1e-14 Score=122.88 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
-+.+.|++|++.++++++++|+++.+|.++|.++..++++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 95 ~g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
+| ++++|+++|++|++++|++...+..+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988776666554
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.4e-13 Score=127.67 Aligned_cols=132 Identities=22% Similarity=0.226 Sum_probs=116.7
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
..|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus 52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 183 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA 183 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999999999999999999999999999888888866665 677777776
No 68
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=7.5e-14 Score=129.46 Aligned_cols=142 Identities=20% Similarity=0.255 Sum_probs=130.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
.++...|++++|+..++++++.+|+++.++..++.++...++ +++|...++ ++++++|....
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~------------~~~~~~p~~~~ 228 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD------------KAIDIQPDHML 228 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH------------HHHHHCTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHccCcchHH
Confidence 999999999999999999999999999999999999976665 677777777 77777766533
No 69
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.54 E-value=9.5e-14 Score=133.50 Aligned_cols=105 Identities=32% Similarity=0.493 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
..+.+++.+|..++..|+|++|+..|+++++.+|+++.++.++|.+|..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
+..+|++++|+..|+++++++|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999999763
No 70
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.54 E-value=2.7e-13 Score=134.33 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 011417 92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC 125 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p--------------------------------------------~--~~~~~~~l~~~ 125 (486)
|..+|++++|+..|+++++++| + ++.++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888777777777766554 3 77788888888
Q ss_pred HHHHhhHHHHHhhcCcc
Q 011417 126 EKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 126 ~~~l~~~~~~~A~~~~~ 142 (486)
+...++ +++|+..++
T Consensus 223 ~~~~g~--~~~A~~~~~ 237 (365)
T 4eqf_A 223 FHLSGE--FNRAIDAFN 237 (365)
T ss_dssp HHHHTC--HHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHH
Confidence 866665 788888777
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=9.8e-14 Score=131.27 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCC
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDP 79 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p 79 (486)
+..+.+++.+|.+++..|+|++|+..|+++++.+|++ +.+++.+|.++.. +|++++|+..|+++++.+|
T Consensus 49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 3448899999999999999999999999999998854 7889999999999 9999999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhh--------
Q 011417 80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK-------- 131 (486)
Q Consensus 80 ~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~l~~-------- 131 (486)
++..+. +.+|.+|...|++++|+..|+++++..|+ .+.++..++.++..++.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 987666 88999999999999999999999999998 46789999999987732
Q ss_pred HHHHHhhcCcccccccccccccccccccCCcC
Q 011417 132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 132 ~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+++++|+..++ ++++..|+.
T Consensus 209 ~~~~~A~~~~~------------~~~~~~p~~ 228 (261)
T 3qky_A 209 ERYRRAVELYE------------RLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHH------------HHHHHCTTC
T ss_pred chHHHHHHHHH------------HHHHHCCCC
Confidence 44677777777 788777764
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=2e-13 Score=128.98 Aligned_cols=131 Identities=22% Similarity=0.192 Sum_probs=120.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+|..+.+++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++...|++++|+..|+++++.+|+++.....++.+. ..+++++|+..+.
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE---QKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HhcCHHHHHHHHH
Confidence 99999999999999999999999999997766665542 2345788888776
No 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.4e-13 Score=124.41 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=104.3
Q ss_pred CcHHHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 011417 9 SSVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDAS 72 (486)
Q Consensus 9 ~~~~~~~~~~~----------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 72 (486)
.+|+++.+++. +|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+
T Consensus 33 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 33 LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35677777777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccc
Q 011417 73 KAIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (486)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~ 143 (486)
++++++|+++.+++.+|.+|...|+ .+.+...+++++...| ...+++.++.++..+++ +++|+..+++
T Consensus 113 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~--~~~A~~~~~~ 182 (208)
T 3urz_A 113 KILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTR--YEKARNSLQK 182 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence 9999999999999999999877654 3455666666653222 12345566666655444 6666665553
No 74
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=1.2e-13 Score=140.74 Aligned_cols=155 Identities=21% Similarity=0.271 Sum_probs=133.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
....+|..+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 97 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR 97 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
..+|.+|..+|++++|+..|+++++.+|++. .++..++.++..... +..|..+...+.+.+|...+.+++...|.
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL--RSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999 888888766543333 55666666666666676666688877665
No 75
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.1e-13 Score=129.29 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS 66 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~~ 66 (486)
.+.++..+|..+...|++++|+..|+++++ .+|.++.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 378999999999999999999999999999 667778999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 67 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 231 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999977766 788888888
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=4.8e-13 Score=125.07 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=117.2
Q ss_pred CCcHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 8 NSSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 8 ~~~~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
..+|.. +.+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 345555 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|.++...|++++|++.|+++++ ..|.+..++..++.++...++ +++|+..++
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 165 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE 165 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999998 778888888889888866655 788887776
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=8e-14 Score=131.88 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG 89 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg 89 (486)
++.++..|..++..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..++++++ .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999 4443 45699999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.++...|++++|++.|+++++.+|+++.++..++.++...++ +++|+..++ ++++.+|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~al~~~~~~ 141 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYME------------KQIRPTTTD 141 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHG------------GGCCSSCCC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHhhcCCCc
Confidence 999999999999999999999999999999999999977665 899998888 777776643
No 78
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.51 E-value=4e-14 Score=138.78 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
...|++++|+..|+++++.+| +++.++..++.+...... ...|..+...+.+..|...+.+++...|..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL--RSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999 899998888655433322 444555555555566666666777776654
No 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=5.1e-14 Score=139.59 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 33 AIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 33 A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
+...+.+++...+.+ ...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555544 4459999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcC--------------------------------cccccccccccccccc
Q 011417 109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV--------------------------------PESERHSVADSIDYQS 156 (486)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~--------------------------------~~~~~~~~a~~~~~~~ 156 (486)
++++|+++.++..++.++...++ +++|+.. ...+.+.+|...+.++
T Consensus 126 l~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 203 (365)
T 4eqf_A 126 LELQPNNLKALMALAVSYTNTSH--QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999877766 4444432 3345667788888888
Q ss_pred cccCCcC
Q 011417 157 IEVEPQY 163 (486)
Q Consensus 157 l~~~~~~ 163 (486)
+...|..
T Consensus 204 l~~~p~~ 210 (365)
T 4eqf_A 204 AHQNGDM 210 (365)
T ss_dssp HHHSCSS
T ss_pred HHhCcCc
Confidence 8888873
No 80
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.5e-13 Score=124.07 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCCHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGYY 86 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~ 86 (486)
.|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++... |++++|+..++++++ .+|.+..+++
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 3555778999999999999999999999999999999999999999999999 999999999999999 6677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 171 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK 171 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999977666 788888888
No 81
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=5.2e-14 Score=113.67 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 88 (486)
|..+..+..+|..++..|++++|+..|+++++.+|.+..++.++|.++..+|++++|+..++++++.+|+ +..+++.+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4556778999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 011417 89 GAAYLAM-GKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 89 g~~~~~~-g~~~~A~~~~~~al~~~p~~~ 116 (486)
|.++..+ |++++|++++++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999999764
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.7e-13 Score=128.16 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR 87 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 87 (486)
.|..+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .+|.+..++..
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 199 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD 199 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999976665 888888888
No 83
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=2.3e-14 Score=141.74 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDA 71 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~ 71 (486)
..+..+..++.+|..++..|+|++|+..|++|+++.|++. .+|.++|.+|..+|++++|+..|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3467788999999999999999999999999999999977 49999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 72 SKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 72 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+...... ..+++...+.
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~-~~~~a~~~~~ 323 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA-LYQKQKEMYK 323 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887543332 1334444443
No 84
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=6.4e-13 Score=131.28 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----------- 78 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 78 (486)
+|..+.++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..++++++.+
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 455667777778888888888888888888888777777777777777777777776666666555443
Q ss_pred --------------------------------------CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 79 --------------------------------------PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 79 --------------------------------------p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
|+ ++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 33 56677777888888888888888888888888877777
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..++.++...++ +++|+..++
T Consensus 254 ~~~l~~~~~~~g~--~~~A~~~~~ 275 (368)
T 1fch_A 254 WNKLGATLANGNQ--SEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 7777777765554 677766665
No 85
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.4e-14 Score=131.96 Aligned_cols=137 Identities=26% Similarity=0.405 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~ 83 (486)
++.+.++..+|..++..|++++|+..|+++++.+ .++.++..+|.++..+|++++|+..++++++++|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 5678899999999999999999999999999999 999999999999999999999999999999999877 79
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHhhHHHHHh
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKL--------------------------SPNDPDAAQKVKECEKAVKKLKFEEA 137 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~l~~~~~~~A 137 (486)
+++.+|.++..+|++++|+..|++++++ +|+++.++..++.++...++ +++|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A 158 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNA 158 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHH
Confidence 9999999999999999999999999994 55556666677777654444 6666
Q ss_pred hcCcccccccccccccccccccCCc
Q 011417 138 IAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
+..++ +++...|.
T Consensus 159 ~~~~~------------~a~~~~~~ 171 (258)
T 3uq3_A 159 VKAYT------------EMIKRAPE 171 (258)
T ss_dssp HHHHH------------HHHHHCTT
T ss_pred HHHHH------------HHHhcCcc
Confidence 66666 77776665
No 86
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=3.9e-13 Score=119.12 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCCHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~ 86 (486)
+|..+.++..+|..++..|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|+..++++++.+|++..+++
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 456678899999999999999999999999999999999999999999 7889998 9999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.+|.++...|++++|+..|+++++.+|+++.....+..+.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999998876655544443
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=5.6e-13 Score=129.20 Aligned_cols=130 Identities=16% Similarity=0.044 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
|..+.++..+|..+...| ++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 444556666666666666 6666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++...|++++|+..++++++.+|+++.++..++.++...++ +++|+..++
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 217 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL 217 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 666666666666666666666666666666666666654444 566665555
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.8e-13 Score=131.36 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---------PRYPKGY 85 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~ 85 (486)
..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.. |..+.++
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555553 4445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
..+|.++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++++|..
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 303 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN--FENAVDYFH------------TALGLRRDD 303 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--HHHHHHHHH------------TTTTTCSCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHccCCCc
Confidence 5556556566666666666666665556555555555555544443 455555555 777777654
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=2.2e-14 Score=155.10 Aligned_cols=171 Identities=12% Similarity=-0.014 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAI--------ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
+|.++.+++..| +..|++++|++.|++++ +.+|++..++..+|.++..+|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344445556555 78999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCC
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~ 161 (486)
..+|+.+|.++..+|++++|++.|++|++++|+++.++..++.++..+++ +++ +. .+.++++++|
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~------------~~~~al~~~P 531 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HK------------FYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TC------------HHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HH------------HHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999977665 344 44 4448999998
Q ss_pred cCCCCcccCCC--ccHHHHHHHHHHHhcccchhhHHHHH
Q 011417 162 QYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKRYAFQ 198 (486)
Q Consensus 162 ~~~~~~l~~~~--l~~~~l~~l~e~l~~~~~l~~~e~~~ 198 (486)
.+..+....+. ......++++..+.+...+.+.....
T Consensus 532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 532 GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHH
Confidence 87655443321 12223455555555555544444333
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.49 E-value=1.5e-13 Score=127.27 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY 86 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 86 (486)
.+..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+|..+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35689999999999999999999999999999986 479999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHhhHHHHHhhcCccccc
Q 011417 87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAA---QKVKECEKAVKKLKFEEAIAVPESER 145 (486)
Q Consensus 87 ~lg~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~l~~~~~~~A~~~~~~~~ 145 (486)
.+|.++.. .|++++|+..|+++++..|+++.+. ..+..+...+....+..|..++..++
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999886 5799999999999999999997654 34444444444444556666667777
Q ss_pred ccccccccccccccCCcC
Q 011417 146 HSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 146 ~~~a~~~~~~~l~~~~~~ 163 (486)
+..|...+.++++..|+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 777777777999888763
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=3.4e-13 Score=130.24 Aligned_cols=142 Identities=15% Similarity=0.079 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC--
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~-- 81 (486)
+..+.++.++|.+|...|++++|+.+|++|+++.|.. +.++.++|.+|... |++++|+.+|++|+++.|..
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 4557899999999999999999999999999998754 57899999999996 99999999999999998754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHhhHHHHHhhcCcccccccccc
Q 011417 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (486)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~ 150 (486)
..++.++|.++..+|++++|+.+|++++++.|++.. ++..++.++..+++ +++|+..++
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~-------- 223 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ-------- 223 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH--------
Confidence 567999999999999999999999999999988754 56778888866555 788888888
Q ss_pred cccccccccCCcCCCC
Q 011417 151 SIDYQSIEVEPQYSGA 166 (486)
Q Consensus 151 ~~~~~~l~~~~~~~~~ 166 (486)
++++++|.+...
T Consensus 224 ----~al~l~p~~~~~ 235 (292)
T 1qqe_A 224 ----EGQSEDPNFADS 235 (292)
T ss_dssp ----GGGCC-------
T ss_pred ----HHHhhCCCCCCc
Confidence 888888877643
No 92
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.49 E-value=1.8e-13 Score=130.49 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=85.4
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccc---
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI--- 299 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~--- 299 (486)
++.+++|+||++..|.++++..... ..+.++++||+|++|+.+.||+.+|..++ .+++++||||...+...
T Consensus 13 ~i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~ 86 (270)
T 3qfm_A 13 KIALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE 86 (270)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence 5899999999999999999876533 34579999999999999999999998873 58899999999877643
Q ss_pred cCChhhhhhhc-------cHHHHHHHHHHhhccccccee--C-CcEEEEeCcc
Q 011417 300 YGFEGEVRSKL-------SETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL 342 (486)
Q Consensus 300 ~~~~~e~~~~~-------~~~~~~~~~~~~~~lp~~~~i--~-~~~~~vHgGi 342 (486)
++|........ ...+.....+|++.||....+ + .+++++||.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~p 139 (270)
T 3qfm_A 87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLP 139 (270)
T ss_dssp SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSBT
T ss_pred cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECCC
Confidence 23332211111 122334567899999998765 3 4899999744
No 93
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.48 E-value=3.6e-14 Score=121.52 Aligned_cols=115 Identities=12% Similarity=0.132 Sum_probs=104.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 35 DLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 35 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
..|+++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 115 DPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 115 ~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++.+++.++.++..+++ +++|+..++ +++.+.|..
T Consensus 85 ~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD--LDGAESGFY------------SARALAAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCC
Confidence 99999999999977776 889998888 777776643
No 94
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.48 E-value=7.4e-14 Score=123.86 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=114.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF-- 98 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~-- 98 (486)
..+...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+++++++|+++.+++.+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++|+..|+++++.+|+++.++..++.++...++ +++|+..++ +++..+|..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ------------KVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhhCCCC
Confidence 999999999999999999999999999977665 888888888 788887764
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=9.4e-14 Score=133.95 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999987777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.+...++.++|++.|+++++.+|+++++++.++.++...++ +++|+..+. ++++.+|.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~------------~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF------------GHLRXDLTA 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTG
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhccccc
Confidence 89999999999999999999999999999999999976666 888888888 888888876
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=4.2e-14 Score=125.75 Aligned_cols=139 Identities=14% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444567899999999999999999999999999999999999999999999999999999999999999 8877766665
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 91 AYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 91 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
+.. ..++..+|+..++++++.+|+++.++..++.++...++ +++|+..++ ++++.+|.+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~ 142 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW------------NILKVNLGAQ 142 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTCTTTT
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHhCcccC
Confidence 433 33444568999999999999999999999999977666 889988888 8888888763
No 97
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=8.2e-14 Score=115.05 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=88.0
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
..|++++|+..|++++++ +|+++.++.++|.+|..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 011417 103 KDFQQVKKLSPNDPDAAQKV 122 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l 122 (486)
..++++++..|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999999998865433
No 98
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=5.4e-13 Score=129.14 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+.++..+|..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++..+|++++|++.|+++++..|+ ++.++..++.++..+++ +++|...++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 310 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYA 310 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 999999999999999999999999 78999999999977776 788888877
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.46 E-value=7.1e-13 Score=122.72 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------ccCHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAI 68 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~~A~ 68 (486)
++....+++.+|.+++..|+|++|+..|+++++.+|+++. +++.+|.++.. .|++++|+
T Consensus 37 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 37 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence 3445678999999999999999999999999999999864 89999999986 57999999
Q ss_pred HHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 011417 69 QDASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKA 128 (486)
Q Consensus 69 ~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~ 128 (486)
..|+++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++ +++..++.++..
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 99999999999987654 6789999999999999999999999999986 679999999977
Q ss_pred HhhHHHHHhhcCcc
Q 011417 129 VKKLKFEEAIAVPE 142 (486)
Q Consensus 129 l~~~~~~~A~~~~~ 142 (486)
+++ +++|+..++
T Consensus 197 ~g~--~~~A~~~~~ 208 (225)
T 2yhc_A 197 MQM--NAQAEKVAK 208 (225)
T ss_dssp TTC--HHHHHHHHH
T ss_pred cCC--cHHHHHHHH
Confidence 776 788888777
No 100
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.46 E-value=6e-13 Score=131.49 Aligned_cols=128 Identities=13% Similarity=0.239 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
.+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+|++++|+..|++++++.|++ ..++..++.++..+++ +++|...+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ--SDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC--GGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC--hHhHHHhHH
Confidence 99999999999999999999888 7889999999988777 455555544
No 101
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=5.7e-13 Score=125.96 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|..+|++++|+..++++++.+|.++.+++.+|...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 45577777777777777777777777777777777777777777777777777777777777777777777777774444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
..+++++|++.|+++++.+|++..++..++.++..++.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 44577777777777777777777777777777766554
No 102
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.44 E-value=1e-12 Score=126.97 Aligned_cols=139 Identities=10% Similarity=-0.009 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
|..+.++..+|.++.+.|++++|++.|+++++.+|++.......+ ..+...|++++|+..|+++++.+|+++.+++.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 455678889999999999999999999999999998865544333 233345889999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH-hhcCcccccccccccccccccccCCcC
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEE-AIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~-A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
|.++..+|++++|...|+++++.+|++++++.+++.++...|+ ..+ +..+++ ++++++|.+
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~--~~eaa~~~~~------------~~~~~~P~~ 268 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK--PPEVTNRYLS------------QLKDAHRSH 268 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHH------------HHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHH------------HHHHhCCCC
Confidence 9999999999999999999999999999999999998877665 333 445555 777777765
No 103
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=1.2e-12 Score=128.08 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGYY 86 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~ 86 (486)
+|+.+.++..+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+| ++..++.
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 4666789999999999999999999999999999999999999999999999999999999999999999 8888888
Q ss_pred HH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+ |.++...|++++|++.++++++.+|+++.++..++.++...++ +++|+..++
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 178 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 77 7899999999999999999999999999999999999977665 788888777
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.42 E-value=6.8e-13 Score=138.11 Aligned_cols=124 Identities=25% Similarity=0.330 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+.++..+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..++++++.+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 344555555555555555555555555555555 5555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcC
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~ 140 (486)
..|++++|+..|+++++.+|+++.++..++.++...++ +++|+..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 366 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAF 366 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Confidence 55555555555555555555555555555555443333 3444433
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.40 E-value=6e-12 Score=114.55 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------- 82 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------- 82 (486)
.+.+++.+|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 83 ------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
.+++++|.++..+|++++|+..|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998754
No 106
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=2.4e-12 Score=107.15 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
.++.+|.++...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred hhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 130 ~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++ +++|+..++ ++++++|.+
T Consensus 99 g~--~~~A~~~~~------------~al~~~P~~ 118 (121)
T 1hxi_A 99 HN--ANAALASLR------------AWLLSQPQY 118 (121)
T ss_dssp HH--HHHHHHHHH------------HHHC-----
T ss_pred CC--HHHHHHHHH------------HHHHhCcCC
Confidence 66 899998888 777777765
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.39 E-value=9.7e-13 Score=116.83 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
..+|+++.+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+++
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~ 112 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 45788899999999999999999999999999999999 8887777665533 334455689999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+|.++...|++++|+..|+++++.+|+. +.++..++.++..+++ .++|+..++
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~A~~~y~ 168 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ--GNAIASKYR 168 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--SCHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--CCcHHHHHH
Confidence 99999999999999999999999999976 5699999999988776 456665554
No 108
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.39 E-value=3e-12 Score=135.29 Aligned_cols=130 Identities=17% Similarity=0.082 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+..+..+|..|.+.|++++|+..|+++++.+|.+..+|..+|.+|.+.|++++|++.|+++++.+|++..++..+|.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|...|++++|++.|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 499 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQ 499 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 88888888888888888888888888888888888866555 777777777
No 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.39 E-value=4.6e-12 Score=128.80 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCC
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEIDP 79 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p 79 (486)
..+.++..+|..+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+..|+++++.+|
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456667777777777777777777777777777776666555 6777777777777777777777777
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccccccc
Q 011417 80 RYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQ 155 (486)
Q Consensus 80 ~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~ 155 (486)
+++ .++..+|.++...|++++|+..++++++.+|+++.++..++.++...++ +++|+..++ +
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~ 354 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYE------------T 354 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------H
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHHHHHHH------------H
Confidence 763 3566777777777777777777777777777777777777777755444 666666666 7
Q ss_pred ccccCCcC
Q 011417 156 SIEVEPQY 163 (486)
Q Consensus 156 ~l~~~~~~ 163 (486)
+++++|..
T Consensus 355 al~~~p~~ 362 (450)
T 2y4t_A 355 AQEHNEND 362 (450)
T ss_dssp HHTTSSSC
T ss_pred HHHhCcch
Confidence 77777754
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.5e-12 Score=108.57 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (486)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 124 (486)
|..+..+..+|..++..|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 125 ~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++..+++ +++|+..++ ++++++|.+
T Consensus 81 ~~~~~~~--~~~A~~~~~------------~al~~~p~~ 105 (126)
T 3upv_A 81 AQIAVKE--YASALETLD------------AARTKDAEV 105 (126)
T ss_dssp HHHHTTC--HHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHH------------HHHHhCccc
Confidence 9977766 888888888 777777443
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.38 E-value=1.1e-12 Score=110.16 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 011417 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------A 118 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~ 118 (486)
+.+.++.++|.++++.|+|++|+..|++|++++|+++.+|+++|.+|..+|++++|++.|+++++++|++.. +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999988754 5
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..+|.++..+++ +++|+..++
T Consensus 86 ~~~lg~~~~~~~~--~~~A~~~~~ 107 (127)
T 4gcn_A 86 MSRAGNAFQKQND--LSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 5566666655444 677777666
No 112
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.37 E-value=1.8e-12 Score=112.11 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL---- 111 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 111 (486)
+..+.++|..++..|+|++|+..|++|++++|+ +.. +|+++|.++..+|+|++|+.+|++|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 112 ---SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 112 ---~p~~~~~~----~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+|++..+| +++|.++..+++ +++|+..++ ++++++|...+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~------------kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK------------KVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCcHHH
Confidence 99999999 999999988877 899999988 999999886554
No 113
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.6e-11 Score=119.34 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
+|+.+..|..+|..+...|++++|...|++++++.|.++. +|.++|.++.+.|++++|+..|+++++.+|.+..+|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5677889999999999999999999999999999999987 999999999999999999999999999999999988877
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.+... .|++++|++.|+++++.+|+++.++..++..+...++ +++|+..++
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 227 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE 227 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 766543 7999999999999999999999999999988855554 788888888
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.37 E-value=1.4e-12 Score=125.61 Aligned_cols=132 Identities=11% Similarity=-0.022 Sum_probs=120.8
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+........+..+...++.++|+..++++++.+|++..+++.+
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 36777889999999999999999999999999999998888888888889999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 89 GAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|.++...|++++|+..|+++++.+|++ ..++..++.++..+++ .++|...++
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~a~~~~r 279 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT--GDALASXYR 279 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC--CCcHHHHHH
Confidence 999999999999999999999999998 8899999999988886 355555444
No 115
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.36 E-value=5.5e-12 Score=133.23 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-HHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY-PKGYY 86 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~ 86 (486)
+.++..+|..+...|++++|++.|+++++.+|.++.+|..+|.+|.+.|++++|++.|+++++. +|++ ..+|.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555555554 3332 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++ +++|...++ ++++++|..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~~l~~~p~~ 583 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI--PGLAITHLH------------ESLAISPNE 583 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH------------HHHhcCCCC
Confidence 555555555555555555555555555555555555555544333 445544444 666666654
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=3.4e-12 Score=120.44 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=120.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 77 (486)
..|..+.++..+|..++..|++++|+.+|++++++. |....++.++|.+|...|++++|+..+++++++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999883 666889999999999999999999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 78 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|....++..+|.++..+|++++|+.+|+++++. .|....++..++.++...++ +++|+..++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 193 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK 193 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 5677889999999999999999999999999999 67777889999999977766 788888887
No 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.35 E-value=5.6e-12 Score=121.75 Aligned_cols=137 Identities=15% Similarity=0.100 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+++..++.+|..+...|++++|++.|++ |.+..++..+|.+|.++|++++|+..++++++.+|++.......+
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 455666777777777777777777777776 677777777777777777777777777777777777654433323
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 90 --AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 90 --~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
.++...|++++|+..|+++++..|+++.++..++.++..+++ +++|...++ ++++.+|....
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~------------~al~~~p~~~~ 235 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQ------------EALDKDSGHPE 235 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCHH
Confidence 223344777777777777777777777777777777755555 677777776 88888887543
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=1.8e-11 Score=101.46 Aligned_cols=105 Identities=32% Similarity=0.543 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+..+..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..+++.+|.
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPND 115 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~ 115 (486)
++...|++++|...++++++.+|++
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999998863
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=2.4e-12 Score=136.03 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=97.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
.|++++|+..|+++++.+|+++.++.++|.++...|++++|++.|+++++++|++..+++.+|.++..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 107 ~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++++.+|+++.++..++.++...++ +++|+..++ ++++++|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 124 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT------------RAHQLLPEE 124 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCC
Confidence 9999999999999999999977666 788888888 777777754
No 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.35 E-value=2.4e-12 Score=121.55 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=114.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (486)
.+...|++++|+..|+++++.. |.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999974 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 99 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++|+..|+++++.+|+++.++..++.++...++ +++|+..++ +++++.|..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a~~~~~~~ 144 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL------------AFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCCC
Confidence 999999999999999999999999999977665 888888888 677666654
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.35 E-value=3.7e-12 Score=111.52 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
++.++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++.+++.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCC
Q 011417 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (486)
Q Consensus 124 ~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (486)
.++..+++ +++|+..++ ++++++|....
T Consensus 87 ~~~~~~g~--~~~A~~~~~------------~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMAD--YKGAKEAYE------------KGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTC--HHHHHHHHH------------HHHHHHSSSCC
T ss_pred HHHHHccC--HHHHHHHHH------------HHHHhCCCchH
Confidence 99977766 889988888 88888887654
No 122
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=126.73 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (486)
.+..+..+..+|.++...|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3344667889999999999999999999999987 67788999999999999999999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccc
Q 011417 79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (486)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~ 150 (486)
+..+.++..+|.++...| +|++|+.+|++|++++|++++++..++.+...++.. +....|.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~-----------~~~~~al 195 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW-----------PPSQNAI 195 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS-----------CCCCCTH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-----------hHHHHHH
Confidence 456889999998887654 699999999999999999999999999887655431 1233344
Q ss_pred cccccccccCCcC
Q 011417 151 SIDYQSIEVEPQY 163 (486)
Q Consensus 151 ~~~~~~l~~~~~~ 163 (486)
..+.++++++|..
T Consensus 196 ~~~~~al~l~p~~ 208 (472)
T 4g1t_A 196 DPLRQAIRLNPDN 208 (472)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHHhhcCCcc
Confidence 4444666666654
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.34 E-value=2.3e-12 Score=124.67 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=118.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 102 (486)
.+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 103 KDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
..|+++++.+|+++.++..++.++...++ +++|+..++ +++...|..
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~a~~~~~~~ 273 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQ--YDLAAKQLV------------RAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCcc
Confidence 99999999999999999999999977665 888888888 677666654
No 124
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=4.1e-12 Score=122.56 Aligned_cols=107 Identities=22% Similarity=0.148 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-
Q 011417 12 SRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK- 83 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~- 83 (486)
..+.++..+|.+|... |++++|+.+|++|+++.|.. ..++.++|.++..+|++++|+..|++++++.|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3467899999999996 99999999999999998864 578999999999999999999999999999987653
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 84 ------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 84 ------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
++.++|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 68999999999999999999999999999987764
No 125
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.1e-12 Score=106.03 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYY 86 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 86 (486)
.+.++..+|..++..|+|++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 355677777777777777777777777777777777777777777777777777777777777777776 66677
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~ 106 (486)
.+|.++..+|++++|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777666666555443
No 126
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.33 E-value=3.4e-11 Score=125.16 Aligned_cols=127 Identities=21% Similarity=0.260 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+.++..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 402 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD 402 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 99999999999999999999999999999999966665 788888777
No 127
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.32 E-value=2.9e-11 Score=98.99 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
++|+..|+++++.+|+++.+++++|.+|...|++++|+..|+++++++|++..+|+.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHhh
Q 011417 111 LSPN--DPDAAQKVKECEKAVKK 131 (486)
Q Consensus 111 ~~p~--~~~~~~~l~~~~~~l~~ 131 (486)
+.|+ +..+...+...+..++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 45556666666655554
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.32 E-value=1.4e-12 Score=128.75 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=116.2
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 90 (486)
..+++++|+..|+++++.+|+++.++.++|.+++..|++++|+..|+++++++|++ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (486)
++..+|++++|+.+|+++++++|+++.+++.++.++..+++ +++|+..++ ++++++|...
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~ 264 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ------------KVLQLYPNNK 264 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCCCCH
Confidence 99999999999999999999999999999999999977776 899998888 8888888753
No 129
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=6e-12 Score=118.73 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 77 (486)
..++..+.++..+|.++...|++++|+.+|++++++ +|....++.++|.+|..+|++++|+..++++++.
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999999999998 4777899999999999999999999999999998
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 78 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
+|....++..+|.++..+|++++|+..++++++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999987
No 130
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=9.3e-12 Score=104.79 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=98.0
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
..+|.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 122 l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
++.++..+++ +++|+..+. +++.+.|.
T Consensus 83 l~~~~~~~~~--~~~A~~~~~------------~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMES--YDEAIANLQ------------RAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHhh--HHHHHHHHH------------HHHHHChh
Confidence 9999977766 788888888 77777766
No 131
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=3.7e-11 Score=116.66 Aligned_cols=140 Identities=13% Similarity=0.030 Sum_probs=119.4
Q ss_pred cHHHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.|..+.+|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|...|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56778899999998874 5885 999999999999 79999999999999999999999999999999
Q ss_pred HHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccccc
Q 011417 75 IEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (486)
Q Consensus 75 l~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~ 153 (486)
++++|.++. +|..+|.++...|++++|+..|++|++..|.+..++...+.+... ..+++++|...++
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~~~~~~~A~~~~~----------- 193 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFE----------- 193 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH-TSCCHHHHHHHHH-----------
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHH-----------
Confidence 999999987 999999999999999999999999999999988777644443211 1234667776666
Q ss_pred ccccccCCc
Q 011417 154 YQSIEVEPQ 162 (486)
Q Consensus 154 ~~~l~~~~~ 162 (486)
++++..|.
T Consensus 194 -~al~~~p~ 201 (308)
T 2ond_A 194 -LGLKKYGD 201 (308)
T ss_dssp -HHHHHHTT
T ss_pred -HHHHhCCC
Confidence 77777775
No 132
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=4.5e-11 Score=113.43 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=112.9
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
+|.++.+++.+|..++..|++++|+.+|+++++ |.++.++.++|.+|.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 456788999999999999999999999999998 8889999999999999 999999999999999985 89999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHhhcCcc
Q 011417 86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----l~~~~~~~A~~~~~ 142 (486)
+.+|.+|.. .+++++|+.+|+++++. +++.++..++.++.. .++ +++|+.+++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~--~~~A~~~~~ 138 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD--FKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--HHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC--HHHHHHHHH
Confidence 999999999 99999999999999997 489999999999965 444 788888777
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.29 E-value=5.8e-12 Score=130.01 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
.+.++..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL 382 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA 128 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~ 128 (486)
...|++++|+..|+++++..|+++. ++..++.++..
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 5555555555555555555555433 45555555533
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=1.8e-11 Score=129.10 Aligned_cols=146 Identities=8% Similarity=0.051 Sum_probs=130.2
Q ss_pred CcHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIE 76 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~ 76 (486)
.+|+...+|..++.++...++ +++|++.++++++.+|++..+|.+++.++.+++ ++++|++.++++++
T Consensus 58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence 467788899999999999998 999999999999999999999999999999999 77999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh------------HHHHHhhcCccc
Q 011417 77 IDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK------------LKFEEAIAVPES 143 (486)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~------------~~~~~A~~~~~~ 143 (486)
++|++..+|..++.+...+| .+++|++++.++++.+|++..+|...+.++..+.. ..+++|++++.
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~- 216 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ- 216 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH-
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH-
Confidence 99999999999999999999 99999999999999999999999999999877621 33555555555
Q ss_pred ccccccccccccccccCCcCCCC
Q 011417 144 ERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 144 ~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+++.++|....+
T Consensus 217 -----------~ai~~~P~~~sa 228 (567)
T 1dce_A 217 -----------NAFFTDPNDQSA 228 (567)
T ss_dssp -----------HHHHHCSSCSHH
T ss_pred -----------HHHhhCCCCccH
Confidence 778777776443
No 135
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.28 E-value=5.7e-11 Score=92.18 Aligned_cols=86 Identities=31% Similarity=0.415 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
+..+..++.+|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|++..++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcC
Q 011417 91 AYLAMG 96 (486)
Q Consensus 91 ~~~~~g 96 (486)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 666543
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=7.8e-12 Score=100.62 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=91.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 011417 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ 120 (486)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 120 (486)
++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|++.|+++++.+|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-hhHHHHHhhcCcc
Q 011417 121 KVKECEKAV-KKLKFEEAIAVPE 142 (486)
Q Consensus 121 ~l~~~~~~l-~~~~~~~A~~~~~ 142 (486)
.++.++..+ ++ +++|+..++
T Consensus 81 ~l~~~~~~~~~~--~~~A~~~~~ 101 (112)
T 2kck_A 81 AKADALRYIEGK--EVEAEIAEA 101 (112)
T ss_dssp HHHHHHTTCSSC--SHHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHH
Confidence 999999665 55 788888777
No 137
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.4e-11 Score=124.26 Aligned_cols=174 Identities=17% Similarity=0.153 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 90 (486)
|..+.++..+|..+...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 778899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCcccC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEG 170 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~ 170 (486)
++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ +++...|.....
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~~~~~~~~~~~~---- 374 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK--FDDCETLFS------------EAKRKFPEAPEV---- 374 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC--HHHHHHHHH------------HHHHHSTTCSHH----
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHcccCHHH----
Confidence 99999999999999999999999999999999999865554 788888877 666666543211
Q ss_pred CCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCC
Q 011417 171 DVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (486)
Q Consensus 171 ~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~ 212 (486)
...+.......+. .+++...+.++.+.....+.
T Consensus 375 -------~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 375 -------PNFFAEILTDKND--FDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp -------HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSS
T ss_pred -------HHHHHHHHHHCCC--HHHHHHHHHHHHHhhhccch
Confidence 1112222222222 24466667777666655544
No 138
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=9.7e-12 Score=119.30 Aligned_cols=133 Identities=26% Similarity=0.286 Sum_probs=118.1
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 77 (486)
...+..+.++..+|..+...|++++|+.+|++++++. |....++.++|.++...|++++|+..++++++.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999999999884 666888999999999999999999999999998
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------
Q 011417 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL---------------------------------------- 111 (486)
Q Consensus 78 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------------------------- 111 (486)
+|....++..+|.++..+|++++|+..++++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6777889999999999999999999999999985
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 112 ---------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 112 ---------~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+|....++..++.++...++ +++|+..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 302 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGK--FEAAETLEE 302 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 35566778888888877666 788888777
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=3e-11 Score=115.86 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=118.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 78 (486)
..+..+.++..+|..+...|++++|+.+|+++++. .|....++..+|.+|...|++++|+..+++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999988 36668899999999999999999999999999874
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|....++..+|.++...|++++|+.+|+++++. .|....++..++.++...++ +++|+..++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 219 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK 219 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 556788999999999999999999999999998 66777889999999977766 788888776
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.25 E-value=1.6e-12 Score=133.88 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=113.9
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 90 (486)
..+++++|+..|+++++..|+.+.++.++|.+++..|+|++|+..|++|++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+|..+|+|++|+.+|++|++++|++..+++.++.++..+++ +++|+..++ ++++++|....+
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~------------~al~l~P~~~~a 387 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE------------KVLEVNPQNKAA 387 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTC----CH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHHhCCCCHHH
Confidence 99999999999999999999999999999999999977766 889988888 888888876543
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.24 E-value=5.4e-12 Score=114.11 Aligned_cols=133 Identities=15% Similarity=0.073 Sum_probs=109.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--------------
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------------- 82 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------------- 82 (486)
.-..+......|++++|.+.++......+..+..+..+|.+++..|++++|+..|++++++.|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 334455666778899999888888888888899999999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccC
Q 011417 83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (486)
Q Consensus 83 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (486)
.+++++|.++..+|++++|+.+++++++++|+++.+++.++.++..+++ +++|+..++ ++++++
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~~ 152 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY------------KAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHHC
Confidence 8999999999999999999999999999999999999999999977776 889988888 788777
Q ss_pred CcC
Q 011417 161 PQY 163 (486)
Q Consensus 161 ~~~ 163 (486)
|..
T Consensus 153 p~~ 155 (198)
T 2fbn_A 153 PNN 155 (198)
T ss_dssp TTC
T ss_pred CCc
Confidence 754
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.23 E-value=2e-11 Score=118.63 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 81 (486)
...+.++..+|.+|...|++++|+.+|++|+++.+. ...++.++|.+|.. |++++|+.+|++|+++.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 345678889999999999999999999999988543 25678899999988 99999999999999887653
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhHHHHHhhcCcccccccccccc
Q 011417 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSI 152 (486)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~ 152 (486)
..++.++|.+|..+|++++|+.+|++++++.|++. .++..++.++..++ ++++|+..++
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~---------- 219 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVR---------- 219 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHH----------
Confidence 57888999999999999999999999999876543 24455555554434 3777777777
Q ss_pred cccccccCCcCCC
Q 011417 153 DYQSIEVEPQYSG 165 (486)
Q Consensus 153 ~~~~l~~~~~~~~ 165 (486)
+++ ++|.+..
T Consensus 220 --~al-~~p~~~~ 229 (307)
T 2ifu_A 220 --ESY-SIPGFSG 229 (307)
T ss_dssp --HHT-TSTTSTT
T ss_pred --HHh-CCCCCCC
Confidence 788 7887654
No 143
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=3.4e-11 Score=120.38 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=115.9
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 80 (486)
...+..+.++..+|..+...|++++|+.++++|+++.+. .+.++.++|.+|..+|++++|+..+++++++.+.
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999999999999998443 3568999999999999999999999999988554
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 81 Y------PKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 81 ~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
. ..++.++|.+|..+|++++|+.+|+++++ .+ |....++..++.++..+++ +++|...++
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 288 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS 288 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 3 35899999999999999999999999999 46 7778889999999977666 788888887
No 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=5.4e-11 Score=101.98 Aligned_cols=132 Identities=15% Similarity=0.219 Sum_probs=111.4
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (486)
..+..+.++..+|..++..|++++|+.++++++++.+.. ..++..+|.++...|++++|+..+++++++.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 345678899999999999999999999999999986542 2589999999999999999999999999876543
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+|.++...|++++|+..++++++..+.. ..++..++.++...++ +++|...++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 153 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 153 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 6689999999999999999999999999874322 3567778888866665 788877776
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.21 E-value=3.2e-11 Score=105.17 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
.+..+..+|..++..|+|++|+..|++++.+ +|.+..+|+++|.+|..+|++++|+.+++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3678899999999999999999999999999 7777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++++|+++.+++.+|.++..+++ +++|+..++ +++.++|..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~------------~al~l~p~~ 130 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWK--LDEAEEDLK------------LLLRNHPAA 130 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH------------HHHhcCCCC
Confidence 99999999999999999977776 889988888 888888864
No 146
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=6e-11 Score=95.71 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 011417 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ 120 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (486)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHHhhHHHHHhhcCcc
Q 011417 121 KVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 121 ~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++.++..++. +++|+..++
T Consensus 83 ~~~~~~~~~~~--~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGS--VQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHC--CCCCSSSSS
T ss_pred HHHHHHHHHHh--HhhhHhHHH
Confidence 88888876664 445544444
No 147
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.21 E-value=2.9e-11 Score=96.00 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=81.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
.+.+|..++..|++++|+..|+++++.+|+++. ++.++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999999888754
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 011417 96 GKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~ 116 (486)
+.+.+|+..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888988888887764
No 148
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=3.4e-11 Score=123.40 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=120.1
Q ss_pred cHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHH
Q 011417 10 SVSRAEELKALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---LEEYGSAIQDASKAIEIDPRYPKG 84 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~ 84 (486)
.++.+.++..+|..+... ++|++|+.+|++|++++|+++.++..+|.++.. .+++++|++.++++++++|++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 344567788888777654 579999999999999999999999999998665 467789999999999999999999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccC
Q 011417 85 YYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (486)
Q Consensus 85 ~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (486)
+..+|..+..+ +++++|.+.+++++..+|+++.++..++.++...+. +++|+..+. ++++..
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~~ 277 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLK------------KALEYI 277 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHH------------HHHHhC
Confidence 99999877655 577899999999999999999999999999977666 888888888 778887
Q ss_pred CcCCCC
Q 011417 161 PQYSGA 166 (486)
Q Consensus 161 ~~~~~~ 166 (486)
|....+
T Consensus 278 p~~~~~ 283 (472)
T 4g1t_A 278 PNNAYL 283 (472)
T ss_dssp TTCHHH
T ss_pred CChHHH
Confidence 765433
No 149
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.20 E-value=1.7e-10 Score=89.50 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 125 (486)
.++.++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 011417 126 EKAV 129 (486)
Q Consensus 126 ~~~l 129 (486)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8543
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.20 E-value=1.8e-10 Score=99.70 Aligned_cols=102 Identities=18% Similarity=0.231 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
.|..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|++..++..++
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999985555
Q ss_pred H--HHHHcCCHHHHHHHHHHHHHh
Q 011417 90 A--AYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 90 ~--~~~~~g~~~~A~~~~~~al~~ 111 (486)
. .+...|++++|++.++++..+
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHH
Confidence 4 488899999999999887654
No 151
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=1.3e-10 Score=112.50 Aligned_cols=119 Identities=10% Similarity=-0.084 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCC
Q 011417 11 VSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAH----TKL---EEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~p~~ 81 (486)
|+...+|..++.++...+ ++++|+..+++++..+|++..+|..++.++ ... ++++++++.++++++.+|++
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn 143 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC
Confidence 444445555555555555 555555555555555555555555555555 444 45555555555555555555
Q ss_pred HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 82 PKGYYRRGAAYLAMGKFK--EALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
..+|+.++.+...+|+++ ++++.++++++.+|.|-.+|.+.+.+...+
T Consensus 144 y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 555555555555555555 555555555555555555555555554433
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.19 E-value=6.2e-11 Score=98.53 Aligned_cols=106 Identities=23% Similarity=0.356 Sum_probs=96.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
.|....++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..++++++.+|+++.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 124 ~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
.++...++ +++|+..++ +++..+|..
T Consensus 92 ~~~~~~~~--~~~A~~~~~------------~~~~~~p~~ 117 (133)
T 2lni_A 92 AALEAMKD--YTKAMDVYQ------------KALDLDSSC 117 (133)
T ss_dssp HHHHHTTC--HHHHHHHHH------------HHHHHCGGG
T ss_pred HHHHHHhh--HHHHHHHHH------------HHHHhCCCc
Confidence 99977665 788888888 666666643
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=1.9e-10 Score=93.14 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
.+..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 127 ~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
...++ +++|...++ ++++.+|..
T Consensus 83 ~~~~~--~~~A~~~~~------------~~~~~~~~~ 105 (118)
T 1elw_A 83 EFLNR--FEEAKRTYE------------EGLKHEANN 105 (118)
T ss_dssp HHTTC--HHHHHHHHH------------HHHTTCTTC
T ss_pred HHHhh--HHHHHHHHH------------HHHHcCCCC
Confidence 77665 788888887 677666643
No 154
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=4.4e-11 Score=109.66 Aligned_cols=126 Identities=17% Similarity=0.019 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.++.+++.+|..+...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|+++.+ +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 45788999999999999999999999999875 689999999999998 7 89999999999965 689999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh--hHHHHHhhcCcc
Q 011417 88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~l~--~~~~~~A~~~~~ 142 (486)
+|.+|.. .+++++|+.+|+++++..| +++.++..++.++..-. ..++++|+.+++
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999998 8999999999999999888 35899999999985511 234777777777
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.17 E-value=4.6e-10 Score=109.46 Aligned_cols=147 Identities=9% Similarity=0.054 Sum_probs=130.2
Q ss_pred CCcHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHH
Q 011417 8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAI 75 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al 75 (486)
.-+|+...+|..++.++...+. +++++..+++++..+|.+..+|.+++.++..+++ ++++++++++++
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 4577888899999999987776 7899999999999999999999999999999994 999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh------------HHHHHhhcCcc
Q 011417 76 EIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK------------LKFEEAIAVPE 142 (486)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~------------~~~~~A~~~~~ 142 (486)
+.+|.+..+|...+.+....|. ++++++++.++++.+|.|..+|...+.++..+.. ..+++++.++.
T Consensus 138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999 6999999999999999999999999999887732 23555665555
Q ss_pred cccccccccccccccccCCcCCCC
Q 011417 143 SERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 143 ~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
+++..+|....+
T Consensus 218 ------------~ai~~~P~d~Sa 229 (331)
T 3dss_A 218 ------------NAFFTDPNDQSA 229 (331)
T ss_dssp ------------HHHHHSTTCHHH
T ss_pred ------------HHHHhCCCCHHH
Confidence 888888876555
No 156
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.17 E-value=4.3e-10 Score=106.61 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCH
Q 011417 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~ 82 (486)
+..+.+++.+|..+.. .+++++|+.+|+++++.+ ++.++.++|.+|.. .+++++|+..|+++++. +++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence 3456789999999999 999999999999999985 89999999999999 99999999999999997 489
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hHHHHHhhcCcc
Q 011417 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (486)
Q Consensus 83 ~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~--~~~~~~A~~~~~ 142 (486)
.+++.+|.+|.. .+++++|+.+|+++++.+ ++.++..++.++..-. .+++++|+.+++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 999999999999999976 7888999999986511 334788887777
No 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.16 E-value=1.6e-10 Score=115.92 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=111.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CC
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP 79 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 79 (486)
++..+..+..+|..++..|++++|+..|+++++..|++. .++..+|.+|...|++++|+..+++++++ +|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 367788899999999999999999999999999999986 58999999999999999999999999998 57
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~l~~ 131 (486)
....++..+|.+|...|++++|+.+|++++++ .|....++..++.++...++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 77889999999999999999999999999998 55666788899999866655
No 158
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.16 E-value=2.9e-10 Score=90.79 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=66.7
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 011417 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQ 120 (486)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~ 120 (486)
.+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|++.|++++++.|++ .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4688888999999999999999999999999999999999999999999999999999999999998887643 33444
Q ss_pred HHHHHH
Q 011417 121 KVKECE 126 (486)
Q Consensus 121 ~l~~~~ 126 (486)
.+...+
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.9e-10 Score=97.55 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=98.6
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
...|.+...+..+|.++...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++++.+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467889999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+..++.++...++ +++|+..++ ++++++|..
T Consensus 102 ~~~~a~~~~~~~~--~~~A~~~~~------------~al~~~p~~ 132 (148)
T 2dba_A 102 LYRRSQALEKLGR--LDQAVLDLQ------------RCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHTC--HHHHHHHHH------------HHHHHCSSC
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH------------HHHHcCCCc
Confidence 9999999977776 788888888 777776653
No 160
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.16 E-value=2.1e-10 Score=110.35 Aligned_cols=127 Identities=12% Similarity=0.016 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH--
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP-- 82 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~-- 82 (486)
...++.+|..+...|++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+..|++|+ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 3445667777777788888888888887765443 5677788888888888888888888887 4455532
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHh-hcCcc
Q 011417 83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEA-IAVPE 142 (486)
Q Consensus 83 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~l~~~~~~~A-~~~~~ 142 (486)
.+++++|.+|..+|+|++|+.++++++++.++ ...++..+|.++..+++ +++| ..+++
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~ 261 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 57788888888888888888888888876532 14567777777766555 5566 44444
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.16 E-value=2.3e-09 Score=103.08 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (486)
+++....+...+..++..|+|++|++.++++++..+... ..++.+|.++...|++++|+..++++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 355667788999999999999999999999999888754 346778999999999999999999999876543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+++.+|.+|..+|++++|+.+|++|+ +..|++. .++.+++.++..+++ +++|+.+++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~ 220 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN 220 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHH
Confidence 5689999999999999999999999999 5566654 578889999866665 899999888
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.14 E-value=4.5e-10 Score=109.48 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=123.1
Q ss_pred CcHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHH
Q 011417 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+|.+..+|..++.++...+ .+++++.++.++++.+|.+..+|..++.+....|. +++++++++++++.+|.+..+|
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 46788899999999999998 49999999999999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hh--------HHHHHhhcCcc
Q 011417 86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV-KK--------LKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l-~~--------~~~~~A~~~~~ 142 (486)
+.++.++..+ +.++++++++.+++..+|+|..+|+.+.-++... +. ..+++++..+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999988 5689999999999999999999998776655333 11 22445555544
Q ss_pred cccccccccccccccccCCcC
Q 011417 143 SERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 143 ~~~~~~a~~~~~~~l~~~~~~ 163 (486)
+.++++|+.
T Consensus 263 ------------elle~~pd~ 271 (331)
T 3dss_A 263 ------------ELQELEPEN 271 (331)
T ss_dssp ------------HHHHHCTTC
T ss_pred ------------HHHhhCccc
Confidence 788887754
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=9e-11 Score=117.28 Aligned_cols=124 Identities=14% Similarity=0.202 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIEL---NS---QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK 83 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~ 83 (486)
++.+|..++..|++++|+..|++|+++ .+ ..+.++.++|.+|..+|++++|+..+++|+++.+. .+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 23 35689999999999999999999999999998443 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++..+|.+|..+|++++|+.+|++|+++.++.. .++.++|.++..+++ +++|+..++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~ 248 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 899999999999999999999999999866443 478889999876665 888888888
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=6.2e-11 Score=102.22 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=84.5
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF----------KEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (486)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (486)
.+.+.|++|+..++++++++|+++++|+++|.++..++++ ++|+..|++|++++|++.++++++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999875 599999999999999999999999999988
Q ss_pred Hhh---------HHHHHhhcCcccccccccccccccccccCCcC
Q 011417 129 VKK---------LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 129 l~~---------~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++. +++++|+.+++ ++++++|.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~------------kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ------------QAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH------------HHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHH------------HHHHhCCCC
Confidence 763 46888888887 999999974
No 165
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.14 E-value=1.5e-10 Score=95.58 Aligned_cols=107 Identities=24% Similarity=0.377 Sum_probs=96.8
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
+.+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 122 l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
++.++...++ +++|+..++ +++...|.
T Consensus 86 ~~~~~~~~~~--~~~A~~~~~------------~~~~~~p~ 112 (131)
T 2vyi_A 86 MGLALSSLNK--HVEAVAYYK------------KALELDPD 112 (131)
T ss_dssp HHHHHHHTTC--HHHHHHHHH------------HHHHHSTT
T ss_pred HHHHHHHhCC--HHHHHHHHH------------HHHhcCcc
Confidence 9999977665 788888887 66666664
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.14 E-value=4e-10 Score=92.04 Aligned_cols=98 Identities=29% Similarity=0.447 Sum_probs=88.7
Q ss_pred hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 43 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
.+|.. ..++..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..++++++.+|+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHhhcCcc
Q 011417 122 VKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 122 l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++.++...++ +++|...++
T Consensus 83 la~~~~~~~~--~~~A~~~~~ 101 (125)
T 1na0_A 83 LGNAYYKQGD--YDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcC--HHHHHHHHH
Confidence 9999976665 788888877
No 167
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=1.2e-10 Score=116.39 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP- 79 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 79 (486)
...+..+.+++.+|.+++..|++++|+.++++|+++.+. .+.++.++|.+|..+|++++|+..+++++++.+
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 446778899999999999999999999999999987543 256788999999999999999999999998643
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 80 -----RYPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 80 -----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
....++.++|.+|..+|++++|+.+|+++++ .+|....++..++.++...++ +++|+.+++
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 285 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE 285 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 1346899999999999999999999999999 778888889999999977666 788888887
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=9.1e-11 Score=112.95 Aligned_cols=126 Identities=11% Similarity=0.001 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCH
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEI-------DPRYP 82 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~ 82 (486)
.+..+|..+...+++++|+.+|++|+++.+.. ..++.++|.+|..+|++++|+.+|+++++. .+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 44468888888999999999999999965432 447999999999999999999999999953 12235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+++++|.+|..+|+|++|+.++++|+++.++. ..++..+|.++..+++. +++|+..++
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~ 261 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence 689999999999999999999999999987544 67899999999777731 467776666
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=2.2e-10 Score=95.11 Aligned_cols=100 Identities=23% Similarity=0.188 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV 122 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (486)
.+++.+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999998 899999999999999999999999999999999 8889999
Q ss_pred HHHHHHHhhHHHHHhhcCcccccccccccccccccccCCc
Q 011417 123 KECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (486)
Q Consensus 123 ~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (486)
+.++..+++ +++|+..++ +++...|.
T Consensus 83 a~~~~~~g~--~~~A~~~~~------------~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGK--NTEAQQTLQ------------QVATQYPG 108 (129)
T ss_dssp HHHHHHTTC--HHHHHHHHH------------HHHHHSTT
T ss_pred HHHHHHcCC--HHHHHHHHH------------HHHHHCCC
Confidence 999976665 888888888 67766664
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.12 E-value=1.6e-10 Score=103.73 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC--
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR-- 80 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~-- 80 (486)
..+.++..+|..+...|++++|+.++++++++ .|....++.++|.++...|++++|+..+++++++ .++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 66889999999999999999999999999994 4556788999999999999999999999999998 443
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
...++..+|.++..+|++++|+.++++++++.+. ++ .++..++.++...++ +++|...++
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 171 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence 3567999999999999999999999999977432 22 235677777755555 777777766
No 171
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.1e-10 Score=122.95 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=115.0
Q ss_pred CcHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHH
Q 011417 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+|+...+|..++.++.+.+ ++++|++.++++++.+|.+..+|.+++.+....| .+++++++++++++.+|.+..+|
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW 181 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 181 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHH
Confidence 46778889999999999999 7799999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 86 ~~lg~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+.++.++..+ +.+++|++++.+|+..+|++..+|+.++.++...+.
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999999885 668999999999999999999999999998855543
No 172
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=1.6e-08 Score=99.12 Aligned_cols=148 Identities=9% Similarity=0.030 Sum_probs=124.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHH
Q 011417 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
..-.++-..++-.........+..++|+++++++|.++|++..+|..++.++..++ .++++++.+++++..+|++..+|
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 34455555566666666666667789999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH------HHHhhcCccccccccccccccccc
Q 011417 86 YRRGAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLK------FEEAIAVPESERHSVADSIDYQSI 157 (486)
Q Consensus 86 ~~lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~------~~~A~~~~~~~~~~~a~~~~~~~l 157 (486)
+.++.++..+ + +++++++.++++++.+|.|..+|...+.+...++... ..+++.+.+ +++
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~------------k~I 194 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN------------EML 194 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH------------HHH
Confidence 9999999998 8 9999999999999999999999999999998877632 125555554 777
Q ss_pred ccCCcCCCC
Q 011417 158 EVEPQYSGA 166 (486)
Q Consensus 158 ~~~~~~~~~ 166 (486)
+.+|....+
T Consensus 195 ~~dp~N~SA 203 (349)
T 3q7a_A 195 RVDGRNNSA 203 (349)
T ss_dssp HHCTTCHHH
T ss_pred HhCCCCHHH
Confidence 777765444
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=2.3e-10 Score=109.69 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011417 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (486)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 124 (486)
|.++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..++++++++|++..+++.++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 125 ~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
++..+++ +++|+..+. ++++++|..
T Consensus 81 ~~~~~g~--~~~A~~~~~------------~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMES--YDEAIANLQ------------RAYSLAKEQ 105 (281)
T ss_dssp HHHHTTC--HHHHHHHHH------------HHHHHHHHT
T ss_pred HHHHcCC--HHHHHHHHH------------HHHHhCccc
Confidence 9977766 889988888 777777754
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.10 E-value=5.6e-10 Score=91.67 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
+|+.+.++..+|.+++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++..|+++.....
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999876543
No 175
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=3e-10 Score=113.19 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=116.0
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (486)
..+..+.++..+|..+...|++++|+.++++++++.|... .++.++|.+|...|++++|+..+++++++.+..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 4566778899999999999999999999999999876543 489999999999999999999999999987765
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+|.++...|++++|+.+|++++++.++. ..++..++.++...++ +++|+..++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 331 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 331 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 7789999999999999999999999999986654 5578888888877665 788888877
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.08 E-value=4.6e-10 Score=109.99 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=115.4
Q ss_pred CcHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCCHHHH
Q 011417 9 SSVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
-+|+...+|..++.++...+ .+++++..+++++..+|++..+|..++.++..+ + +++++++.++++++.+|++..+|
T Consensus 83 ~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW 162 (349)
T 3q7a_A 83 MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTW 162 (349)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 46777889999999999999 599999999999999999999999999999998 8 89999999999999999999999
Q ss_pred HHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 86 YRRGAAYLAMGKFK--------EALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 86 ~~lg~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
+.++.+...++.++ +++++++++++.+|.|..+|.+.+.+...++.
T Consensus 163 ~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 99999999999888 99999999999999999999999999866553
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.08 E-value=8.9e-11 Score=121.38 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 89 (486)
+|+.+.++..+|.++.+.|++++|++.|++|++++|+++.++.++|.+|..+|++++|++.|+++++++|++..++..++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 56668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHcCCHHHHHHHHH-----------HHHHhCCCCHH
Q 011417 90 AA--YLAMGKFKEALKDFQ-----------QVKKLSPNDPD 117 (486)
Q Consensus 90 ~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~ 117 (486)
.+ +..+|++++|++.++ ++++++|+...
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 98 889999999999999 88888876543
No 178
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=1.2e-09 Score=105.61 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCC
Q 011417 9 SSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEIDP 79 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~p 79 (486)
.+|+...+|..++.++ ... +++++++..++++++.+|.+..+|.+++.++..++.++ ++++.++++++.+|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 4567778899999888 666 79999999999999999999999999999999999999 99999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 80 RYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
.+..+|+.++.+...+++ ++++++++++++..+|+|..+|..++.++...++
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999998 9999999999999999999999999999977765
No 179
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=7.8e-10 Score=106.51 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY 81 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~ 81 (486)
.....+...|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++++ .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 346678999999999999999999999999999998 578899999999999999999999999987 4556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhh
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKK 131 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~l~~ 131 (486)
..++..+|.++...|++++|+..+++++++.|... .++..++.++...++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 78999999999999999999999999999876543 377888888866554
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=2.1e-10 Score=111.39 Aligned_cols=127 Identities=24% Similarity=0.197 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR------ 80 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 80 (486)
-...+...|..|...|+|++|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++++.+.
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 34445556788999999999999999999987543 678999999999999999999999999998543
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
...++.++|.+|.. |++++|+.+|++|+++.|.. ..++..++.++..+++ +++|+..++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 179 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ 179 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 24688999999999 99999999999999998754 4677888888866665 888888888
No 181
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=1.1e-09 Score=114.62 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.|+.+..+..+|..+...|++++|...|++++++.|.++ .+|..+|..+.+.|++++|...|++|++..|.....+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 567788999999999999999999999999999999985 6999999999999999999999999999999888888877
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCCc
Q 011417 89 GAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (486)
Q Consensus 89 g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (486)
+.+ +...|++++|...|+++++..|+++.++..++.++...|+ .++|...++ +++...|....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~--~~~Ar~~~~------------~al~~~~~~~~-- 460 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE------------RVLTSGSLPPE-- 460 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC--HHHHHHHHH------------HHHHSCCSCGG--
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC--HhhHHHHHH------------HHHhccCCCHH--
Confidence 765 4569999999999999999999999999999988855544 788888888 66655442110
Q ss_pred ccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc
Q 011417 168 IEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA 209 (486)
Q Consensus 168 l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ 209 (486)
........++......+ +.+.+..+..++.+.+..
T Consensus 461 -----~~~~lw~~~~~~e~~~G--~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 -----KSGEIWARFLAFESNIG--DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp -----GCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHH
T ss_pred -----HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCch
Confidence 01112223333322222 344566777777777764
No 182
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.06 E-value=1.9e-10 Score=110.86 Aligned_cols=132 Identities=14% Similarity=0.202 Sum_probs=113.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 81 (486)
..+..+.++..+|..+...|++++|+.+++++++..+.. ..++..+|.++...|++++|+..+++++++.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 345667789999999999999999999999999886543 3489999999999999999999999999987665
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+|.++...|++++|+.+++++++..+.. ..++..++.++...++ +++|...++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 327 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 327 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 7789999999999999999999999999986543 3477888888877666 788888777
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=3.5e-10 Score=93.35 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 011417 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA 118 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 118 (486)
..+.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+++++++..|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999999877 888
Q ss_pred HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 119 ~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..++.++...++ +++|+..++
T Consensus 82 ~~~la~~~~~~~~--~~~A~~~~~ 103 (131)
T 1elr_A 82 YARIGNSYFKEEK--YKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999876665 788888887
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.06 E-value=6.9e-10 Score=88.59 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY 86 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 86 (486)
.+|+++.+++.+|.+++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 467888999999999999999999999999999999999999999999999999999999999999998664 333434
Q ss_pred HHHHHHH
Q 011417 87 RRGAAYL 93 (486)
Q Consensus 87 ~lg~~~~ 93 (486)
.+..++.
T Consensus 82 ~l~~~l~ 88 (100)
T 3ma5_A 82 ELQDAKL 88 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.06 E-value=1.5e-09 Score=104.27 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (486)
..+....+...+..++..|+|++|+..++++++..+..+. .+..+|.++...+++++|+..+++++++.+..
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 3455566777889999999999999999999998877655 34458999999999999999999999975442
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHhhHHHHHhhcCcccccccccc
Q 011417 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PND----PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVAD 150 (486)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~ 150 (486)
..++.++|.+|..+|++++|+.+|++|++.. |.+ ..++.+++.++..+++ +++|+.+++
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~-------- 220 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN-------- 220 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHH--------
Confidence 3479999999999999999999999999632 122 3478889999876665 899999888
Q ss_pred cccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCC
Q 011417 151 SIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (486)
Q Consensus 151 ~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~ 212 (486)
+++++.+....... .......+.......+. ..+++...+.++..+++...+
T Consensus 221 ----~al~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 221 ----KAIEISCRINSMAL-----IGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp ----HHHHHHHHTTBCTT-----HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHcCcHHH-----HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCC
Confidence 66665443321111 11111122222221111 125678888888888876543
No 186
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.06 E-value=1.6e-10 Score=116.07 Aligned_cols=131 Identities=14% Similarity=0.219 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-- 81 (486)
.+..+.++..+|..++..|++++|+.+|++++++.|... .++.++|.+|..+|++++|+..+++++++.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 456677899999999999999999999999999877543 389999999999999999999999999987754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..++..+|.++..+|++++|+.++++++++.++. ..++..++.++...++ +++|+.+++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 367 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 6789999999999999999999999999986543 3478888888866665 788888777
No 187
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=5.3e-10 Score=102.36 Aligned_cols=127 Identities=17% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CC
Q 011417 12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY 81 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~ 81 (486)
..+.+++.+|..|.. + ++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+.+|+++++..+ ++
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 346789999999998 7 99999999999964 6789999999999998 8899999999999999988 45
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh----hHHHHHhhcCcc
Q 011417 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE 142 (486)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~----~~~~~~A~~~~~ 142 (486)
+.++++||.+|.. .+++++|+.+|+++++. |.++.+.+.++.++..-. ..++++|+.+++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 9999999999999 89999999999999998 778889999999985432 125778877777
No 188
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.04 E-value=6e-10 Score=110.98 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY 81 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~ 81 (486)
..+..+..+|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 346788999999999999999999999999999998 468999999999999999999999999987 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK 131 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~l~~ 131 (486)
..++..+|.++...|++++|+.++++++++.|.. ..++..++.++...++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999987754 3478888888865554
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.00 E-value=3.6e-10 Score=111.45 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YL 93 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~ 93 (486)
.++.++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999988 44
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
..+..+++.+.|++++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=4.6e-10 Score=106.55 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYYRRGAA 91 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~ 91 (486)
.+.....|..+...|+|++|.+.|+.++...|.+. +.+.+|.++++.+++++|+..++++....+.. ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 44567778888888899999888888888888877 88888888888888888888888776643221 3578888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 92 YLAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..+|++++|+.+|++++.-. |. .+++++.++.++..+|+ .++|...++
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~ 232 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE 232 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 888888888888888888543 44 55688888888877776 678887777
No 191
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.99 E-value=2.3e-09 Score=84.80 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=67.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|++.|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 357899999999999999999999999999999 99999999999999999999999999999999988733
No 192
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=1e-09 Score=109.51 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=106.7
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID 78 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~ 78 (486)
.+..+.++..+|.++...|++++|+++|++|+++.+ ..+.++.++|.+|..+|++++|+..++++++ .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 346788999999999999999999999999999743 1357899999999999999999999999999 78
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHhh-HHHHHhhcCcc
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVKK-LKFEEAIAVPE 142 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~l~~-~~~~~A~~~~~ 142 (486)
|..+.+++.+|.++..+|++++|+.++++++++.+. .......++.++...+. ..+.+|+..++
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888999999999999999999999999999999654 22333344444322221 12556666555
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.97 E-value=3e-09 Score=106.13 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=91.8
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.++..+.++.++|.++++.|+|++|+.+|++|++++|+++.+++++|.+|..+|++++|+..|++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 011417 89 GAAYLAMGKFKEALKD 104 (486)
Q Consensus 89 g~~~~~~g~~~~A~~~ 104 (486)
+.++..++++++|.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888654
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=4.3e-09 Score=99.91 Aligned_cols=114 Identities=14% Similarity=0.053 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CH
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-YP 82 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~ 82 (486)
...|..+ .++.+|..+++.++|++|+.+|++++...+.. ..+++++|.++..+|++++|+.+|++++... |. ..
T Consensus 130 ~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~ 208 (282)
T 4f3v_A 130 VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACAR 208 (282)
T ss_dssp CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH
T ss_pred hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH
Confidence 3557777 99999999999999999999999887643221 4589999999999999999999999998654 55 66
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 123 (486)
.+++.+|.++..+|+.++|...|++++..+|+ +.+...|.
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 79999999999999999999999999999999 77665553
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.91 E-value=8e-09 Score=88.15 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---- 80 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 80 (486)
...+.++..+|..+...|++++|+.++++++++.+.. ..++.++|.++...|++++|+..+++++++.+.
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 3445789999999999999999999999999986543 678999999999999999999999999987432
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
...++..+|.++...|++++|++++++++++..+
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999987554
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.90 E-value=8e-09 Score=106.53 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC-
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRY- 81 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~- 81 (486)
.....+..+..+|+|++|+..|++++++ +|+.+.++.+||.+|..+|+|++|+..++++++. .|++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455666778899999999999999986 3445678999999999999999999999999975 3444
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDA---AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 82 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..+.+||.+|..+|+|++|+..|++|+++ .|++|.. ...++.++..++. +++|...+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--~~~ae~~~~ 459 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--FRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 567999999999999999999999999986 5777654 4566667655555 566666655
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.90 E-value=6.8e-09 Score=84.61 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=75.9
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY 86 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 86 (486)
.+|+.+.+++.+|.+++..|++++|+..|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|. +..+..
T Consensus 14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999874 444555
Q ss_pred HHHHHHHHcC
Q 011417 87 RRGAAYLAMG 96 (486)
Q Consensus 87 ~lg~~~~~~g 96 (486)
.+...+..++
T Consensus 94 ~l~~~l~~l~ 103 (115)
T 2kat_A 94 ELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5554444433
No 198
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.90 E-value=4.7e-09 Score=109.71 Aligned_cols=141 Identities=13% Similarity=0.024 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.|..+..|...|..+.. .|+++ +|+..|++|++ ..|++..+|..+|..+...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35667889999999886 79987 99999999997 89999999999999999999999999999999
Q ss_pred HHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccccc
Q 011417 75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (486)
Q Consensus 75 l~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~ 153 (486)
++.+|.++ .+|..+|.++...|++++|.+.|++|++..|.....+...+.+... ..++.++|...++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e----------- 415 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFE----------- 415 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHHHHH-----------
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHHHHH-----------
Confidence 99999985 6999999999999999999999999999988877666554443211 2334677777777
Q ss_pred ccccccCCcC
Q 011417 154 YQSIEVEPQY 163 (486)
Q Consensus 154 ~~~l~~~~~~ 163 (486)
++++..|..
T Consensus 416 -~al~~~p~~ 424 (530)
T 2ooe_A 416 -LGLKKYGDI 424 (530)
T ss_dssp -HHHHHHTTC
T ss_pred -HHHHHCCCC
Confidence 777776643
No 199
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.89 E-value=2.1e-08 Score=85.50 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 011417 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK 103 (486)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~ 103 (486)
....+.+.|.+.++.+|.+..+.+++|.++.+.+ +.++++..++.+++.+ | +..+++|++|..++++|+|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4566788889999989999999999999999988 7779999999999998 7 578999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 104 DFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
+++++++.+|+|..+......+.....
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888777765543
No 200
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.84 E-value=1.2e-08 Score=91.32 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=93.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcC
Q 011417 24 AFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIE------IDPRYPKGYYRRGAAYLAMG 96 (486)
Q Consensus 24 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g 96 (486)
++..|++++|.+.++.... +| ..+.++..+|.++...|++++|+..++++++ ..+....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996655544 55 6789999999999999999999999999998 34456788999999999999
Q ss_pred CHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 97 KFKEALKDFQQVKKL---SPND----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 97 ~~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
++++|+.++++++++ .+++ ..++..++.++...++ +++|...++
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 131 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--LAGARQEYE 131 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 999999999999998 4533 3457788888876665 788888877
No 201
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.84 E-value=6.5e-08 Score=86.84 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=49.6
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (486)
.++.+++|+||+...+.++++.... ...+.++++||++|. +++..|..+ +..++.++||||....
T Consensus 26 m~i~~iSD~Hg~~~~l~~~l~~~~~-~~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 26 MKIGIMSDTHDHLPNIRKAIEIFND-ENVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC 90 (190)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHHHH-SCCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence 4699999999999999998876532 234579999999984 566665443 4579999999997643
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.80 E-value=4.7e-08 Score=76.85 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 58888888889888876655 688999999999999999999999999999999999999999999988888544
No 203
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.77 E-value=4.2e-08 Score=97.14 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------- 78 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------- 78 (486)
...++..+|..+...|++++|+..+++++++.|.. ..++.++|.++...|++++|+..+++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 45567788888888888888888888888775543 2346778888888888888888888888764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
|....++..+|.++...|++++|...++++++..+.. ..++..++.++...++ +++|...++
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 198 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLN 198 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 3345567778888888888888888888888887653 2456667777655554 677777666
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.75 E-value=2.7e-08 Score=98.58 Aligned_cols=129 Identities=14% Similarity=-0.018 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---- 82 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---- 82 (486)
-....+..+|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++.+.|...
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3467788999999999999999999999999887653 3688999999999999999999999998765432
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 83 --KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 83 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.++..+|.++...|++++|+..++++++..+ ....++..++.++...++ +++|...++
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 159 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 3478899999999999999999999998753 234456678888765555 788888777
No 205
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.74 E-value=8.6e-08 Score=99.00 Aligned_cols=106 Identities=21% Similarity=0.085 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 16 ELKALANEAFRA-----KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 16 ~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
+++.+|..+... +++++|+.+|+++++. .++.+++++|.+|...| ++++|+.+|+++++. .++.+++.
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 368 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHH
Confidence 444455555444 4555555555555443 23445555555555433 455555555555544 34555555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 88 RGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 88 lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (486)
+|.+|.. .+++++|+.+|++|++. .++.++..++.++.
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5555555 55555555555555543 24555555555553
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=9.2e-08 Score=97.02 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=83.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIEL-----NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPR---YPKGY 85 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~ 85 (486)
......|+|++|+..|++++++ .|+ .+..+.++|.+|..+|+|++|+..++++++. .|+ .+..+
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3334568999999999999985 344 4677999999999999999999999999975 344 45679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQ 120 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 120 (486)
++||.+|..+|+|++|+..|++|+++ .|++|....
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 99999999999999999999999987 578876543
No 207
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.70 E-value=1.6e-07 Score=86.44 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=52.5
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
.++.+++|+|+....+.++++..... ..+.++++||++|+|..+.+...++-.|+.. +..+++++||||...
T Consensus 6 mri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~ 77 (228)
T 1uf3_A 6 RYILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI 77 (228)
T ss_dssp CEEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred EEEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence 46999999999998888877654311 2356999999999997666555555555432 345999999999754
No 208
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.70 E-value=8.7e-08 Score=87.86 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=80.5
Q ss_pred CceEEEccCCCChH------HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 222 KHFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 222 ~~~~v~GDihG~~~------~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
.++.+++|+|++.. .+.++++ ....+.++++||++| .+++..|..+. ..+++++||||...
T Consensus 26 m~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~ 92 (215)
T 2a22_A 26 DLVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAI 92 (215)
T ss_dssp EEEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSC
T ss_pred cEEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCcc
Confidence 46999999998752 3333433 223457999999997 57777777653 36899999999765
Q ss_pred cccccCChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccc
Q 011417 296 MNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELL 372 (486)
Q Consensus 296 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~ll 372 (486)
... .. +++..+|....+ +.+++++||.+..+
T Consensus 93 ~~~----~~---------------~~~~~lp~~~~~~~~~~~i~l~Hg~~~~~--------------------------- 126 (215)
T 2a22_A 93 FNP----DP---------------ESNGVFPEYVVVQIGEFKIGLMHGNQVLP--------------------------- 126 (215)
T ss_dssp CBC----CG---------------GGTBCCCSEEEEEETTEEEEEECSTTSSS---------------------------
T ss_pred ccc----Ch---------------hhHhhCCceEEEecCCeEEEEEcCCccCC---------------------------
Confidence 441 10 245567754443 34799999854110
Q ss_pred cCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccc
Q 011417 373 WSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKD 419 (486)
Q Consensus 373 w~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~ 419 (486)
| .+.+.+.++++..+. +++|-||+-..
T Consensus 127 ~-------------------~~~~~l~~~~~~~~~-d~vl~GHtH~~ 153 (215)
T 2a22_A 127 W-------------------DDPGSLEQWQRRLDC-DILVTGHTHKL 153 (215)
T ss_dssp T-------------------TCHHHHHHHHHHHTC-SEEEECSSCCC
T ss_pred C-------------------CCHHHHHHHHhhcCC-CEEEECCcCCC
Confidence 1 134667788888899 99999999753
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.69 E-value=2.6e-07 Score=74.15 Aligned_cols=78 Identities=14% Similarity=-0.022 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (486)
+.-++.+|..++..++|+.|+.+|++|++.. +..+.++..+|.++.++|++++|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4445556666666666666666666666542 234566777777777777777777777777777777777666
Q ss_pred HHHHH
Q 011417 121 KVKEC 125 (486)
Q Consensus 121 ~l~~~ 125 (486)
++...
T Consensus 85 n~~~~ 89 (104)
T 2v5f_A 85 NLKYF 89 (104)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 66533
No 210
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.68 E-value=2.4e-07 Score=95.68 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHH
Q 011417 12 SRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPK 83 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 83 (486)
.++.+++.+|..|+. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 457788999999988 89999999999999875 678899999999998 88999999999999875 5888
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hHHHHHhhcCcc
Q 011417 84 GYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (486)
Q Consensus 84 ~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~--~~~~~~A~~~~~ 142 (486)
+++.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++..-. ..++++|+.+++
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999999988 88999999999998775 57888899998885410 234667776665
No 211
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.68 E-value=8.9e-08 Score=98.11 Aligned_cols=122 Identities=15% Similarity=0.106 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 15 ~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
.+++.+|..|...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+.+|+++. |+++.++++
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 37899999999999 999999999999999999999999999999776 79999999999998 899999999
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHhhcCcc
Q 011417 88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK---LKFEEAIAVPE 142 (486)
Q Consensus 88 lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~---~~~~~A~~~~~ 142 (486)
+|.+ + ...+++++|+.+|+++.+. .++.+++.++.++. .+. .++++|+.+++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9998 4 5789999999999999865 58999999999986 331 14777777777
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.67 E-value=9e-08 Score=97.18 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPR 80 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~ 80 (486)
..........+..+|+|++|+..|++++++ .|+ ...++.++|.+|..+|+|++|+..++++++. .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 445556667778899999999999999975 233 4678999999999999999999999999975 344
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHH
Q 011417 81 Y---PKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAA---QKVKECEK 127 (486)
Q Consensus 81 ~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~ 127 (486)
+ +..+++||.+|..+|++++|+..|++|+++ .|++|... .+++.+..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 4 557999999999999999999999999987 57777654 44444443
No 213
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.67 E-value=4.4e-08 Score=87.01 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=60.8
Q ss_pred ceEEEccCCC--ChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccccccccc
Q 011417 223 HFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (486)
Q Consensus 223 ~~~v~GDihG--~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 300 (486)
++.+++|+|| +...+.++++... ...+.++++||++|+ +++..|..+. ..++.++||||...
T Consensus 24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~----- 87 (178)
T 2kkn_A 24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD----- 87 (178)
T ss_dssp EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG-----
T ss_pred EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH-----
Confidence 6899999997 6667777777643 234579999999983 7888877663 35899999999753
Q ss_pred CChhhhhhhccHHHHHHHHHHhhccccccee---CCcEEEEeCcc
Q 011417 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 342 (486)
Q Consensus 301 ~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~i---~~~~~~vHgGi 342 (486)
|...+|....+ +.+++++||..
T Consensus 88 --------------------~~~~lp~~~~~~~~g~~i~l~HG~~ 112 (178)
T 2kkn_A 88 --------------------VKEHLPFSKVLLVEGVTIGMCHGWG 112 (178)
T ss_dssp --------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred --------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence 22345654444 45899999853
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.67 E-value=2.7e-07 Score=78.14 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=47.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA- 94 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 94 (486)
+|..|...+..++|+.+|++|.+. .++.+++++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 445555555555555555555543 445555555555555 45555555555555543 445555555555555
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 011417 95 ---MGKFKEALKDFQQVKKL 111 (486)
Q Consensus 95 ---~g~~~~A~~~~~~al~~ 111 (486)
.+++++|+.+|++|.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 55555555555555554
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.65 E-value=2.2e-07 Score=74.52 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
+..++.+|..++..++|..|+..|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 5678999999999999999999999999863 345889999999999999999999999999999999999988
Q ss_pred HHH
Q 011417 87 RRG 89 (486)
Q Consensus 87 ~lg 89 (486)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 876
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.63 E-value=2.2e-07 Score=90.95 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCC
Q 011417 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-------GSAIQ-DAS--KAIEIDP 79 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-------~~A~~-~~~--~al~~~p 79 (486)
.+..++..|..++..++ ..+|+.+|++|++++|+++.++..++.+|.....+ .+++. .++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 35667888888887654 58899999999999999999999999988632211 11111 222 2335679
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCccccccccccccccccccc
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~ 159 (486)
.++.++..+|.++...|++++|+..+++|++++|+ ..++..++.++...|+ +++|++.++ +++.+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~------------~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYL------------TAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhc
Confidence 99999999999999999999999999999999975 6677888888877666 788888888 88888
Q ss_pred CCcC
Q 011417 160 EPQY 163 (486)
Q Consensus 160 ~~~~ 163 (486)
+|..
T Consensus 340 ~P~~ 343 (372)
T 3ly7_A 340 RPGA 343 (372)
T ss_dssp SCSH
T ss_pred CCCc
Confidence 8864
No 217
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.63 E-value=2.1e-07 Score=78.80 Aligned_cols=108 Identities=23% Similarity=0.189 Sum_probs=92.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 011417 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL 102 (486)
Q Consensus 27 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~ 102 (486)
.+++++|+.+|+++.+.....+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999998755444 999999999999999999999986 789999999999999 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHh--hHHHHHhhcCcc
Q 011417 103 KDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (486)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~l~--~~~~~~A~~~~~ 142 (486)
++|++|.+. .++.+.+.++.++..=. ..++++|+.+++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 999999986 78999999999985400 234777777776
No 218
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.61 E-value=1.1e-07 Score=84.15 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=74.0
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccccccccCC
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~~ 302 (486)
++.+++|+||+...+.++++.... ..+.++++||+.. +++ ..+. ..++.++||||....
T Consensus 8 ~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l---~~l~----~~~~~v~GNhD~~~~------ 66 (176)
T 3ck2_A 8 TIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPD---SPLW----EGIRVVKGNMDFYAG------ 66 (176)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTT---CGGG----TTEEECCCTTCCSTT------
T ss_pred EEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHH---Hhhh----CCeEEecCcccchhc------
Confidence 589999999999999999987653 4567999999731 222 1221 259999999996531
Q ss_pred hhhhhhhccHHHHHHHHHHhhcccccc--ee-CCcEEEEeCcccCCCCCCchhhcccccCCCCCCCCcccccccCCCCCC
Q 011417 303 EGEVRSKLSETFVELFAEVFCCLPLAH--VL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 379 (486)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~~~~lp~~~--~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~ 379 (486)
+|... .+ +.+++++||.+..+ |
T Consensus 67 ----------------------~p~~~~~~~~~~~i~~~Hg~~~~~---------------------------~------ 91 (176)
T 3ck2_A 67 ----------------------YPERLVTELGSTKIIQTHGHLFDI---------------------------N------ 91 (176)
T ss_dssp ----------------------CCSEEEEEETTEEEEEECSGGGTT---------------------------T------
T ss_pred ----------------------CCcEEEEEECCeEEEEECCCccCC---------------------------C------
Confidence 12111 22 35899999965110 0
Q ss_pred CCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeeccccccc
Q 011417 380 PGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDE 420 (486)
Q Consensus 380 ~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~ 420 (486)
.+.+.+.++++..+. +++|-||+-...
T Consensus 92 -------------~~~~~l~~~~~~~~~-d~vi~GHtH~~~ 118 (176)
T 3ck2_A 92 -------------FNFQKLDYWAQEEEA-AICLYGHLHVPS 118 (176)
T ss_dssp -------------TCSHHHHHHHHHTTC-SEEECCSSCCEE
T ss_pred -------------CCHHHHHHHHHhcCC-CEEEECCcCCCC
Confidence 123567788888999 999999997643
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=1.3e-07 Score=74.31 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=67.3
Q ss_pred cHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
+|+++..+..+|.+++..++ .++|...+++|++++|+++.++..+|..++..|+|++|+..++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56778899999999986665 7999999999999999999999999999999999999999999999999984
No 220
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.61 E-value=5.6e-07 Score=80.86 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=44.5
Q ss_pred CceEEEccCCCChH--HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCcccc
Q 011417 222 KHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 222 ~~~~v~GDihG~~~--~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
.++.+++|+|++.. .+...+...-.....+.++++||+++ .+++..|..+. ..+++++||||...
T Consensus 11 m~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 11 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL 77 (192)
T ss_dssp CEEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred eEEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence 35899999999642 23333333211233567999999997 57777776653 36999999999754
No 221
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.59 E-value=2.7e-07 Score=103.20 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----------- 80 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------- 80 (486)
+.+.+|+++|.++...|++++|+.+|.+| +++..|..+|.++.+.|+|++|++++..|.+..++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 45778999999999999999999999776 88889999999999999999999999887755432
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 81 ----------------YPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 81 ----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
+...+..+|..+...|+|++|..+|++|
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 1223455566666666666666555554
No 222
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.58 E-value=7.1e-08 Score=87.97 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=55.4
Q ss_pred ceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCC--------ChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~--------~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++.+++|+||+...+.++++..... ..+.++++||++|+|+ .+.+++.+|..+. ..+++++||||..
T Consensus 27 ki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~ 101 (208)
T 1su1_A 27 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDSE 101 (208)
T ss_dssp EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCchH
Confidence 5899999999999998888764321 2356999999999998 4688999888775 3699999999975
Q ss_pred c
Q 011417 295 S 295 (486)
Q Consensus 295 ~ 295 (486)
.
T Consensus 102 ~ 102 (208)
T 1su1_A 102 V 102 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.57 E-value=1.4e-07 Score=97.19 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=93.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
...++|..+..+.++|.+|..+|+|++|+.++++++++ +|+.+..+.+||.+|..+|++++|+..+++|+++
T Consensus 343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999986 3455778999999999999999999999999975
Q ss_pred -----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 78 -----DPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 78 -----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
.|+++ +....++.++..++.|++|...|+++.+..
T Consensus 423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56654 556788999999999999999999987643
No 224
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.47 E-value=3.9e-07 Score=93.24 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHH
Q 011417 13 RAEELKALANEAFRAKKY----SQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
.+.+++.+|..|...+.+ ++|..+++.+...+|. +++++|.+|...| ++++|+.+|+++.+..|..+..+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 355788899999988854 4455556665555554 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHhhHHHHHhhcCcc
Q 011417 86 YRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKEC-EKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 86 ~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~l~~~~~~~A~~~~~ 142 (486)
+++|.+|... +++++|+.+|+++. |.++.+++.++.+ +...+.+++++|+.+++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999776 79999999999998 9999999999998 43334556888888877
No 225
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=98.45 E-value=5.3e-07 Score=81.20 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=83.9
Q ss_pred ceEEEccCCCChHHH-------------HHHHHHc-CCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCeEEEec
Q 011417 223 HFTVCGDVHGQFYDL-------------LNIFELN-GLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (486)
Q Consensus 223 ~~~v~GDihG~~~~l-------------~~~l~~~-~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lr 288 (486)
++.+++|+|+....+ ..+++.. ......+.++++||++++|+...+++.+|..+. ..+++++
T Consensus 3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v~ 78 (195)
T 1xm7_A 3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILVM 78 (195)
T ss_dssp CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEEC
T ss_pred EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEEe
Confidence 589999999644322 1122221 111245679999999999988888888887763 4699999
Q ss_pred cCCcccccccccCChhhhhhhccHHHHHHHHHHhhcccccce---e-CCcEEEEeCcccCCCCCCchhhcccccCCCCCC
Q 011417 289 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV---L-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364 (486)
Q Consensus 289 GNHE~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~lp~~~~---i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 364 (486)
||||........ .|..+|-... + +.+++++||-+ .+.. .
T Consensus 79 GNhD~~~~~~~~--------------------~~~~l~~~~~l~~~~~~~i~~~H~~~-~~~~----------------~ 121 (195)
T 1xm7_A 79 GNHDKDKESLKE--------------------YFDEIYDFYKIIEHKGKRILLSHYPA-KDPI----------------T 121 (195)
T ss_dssp CTTCCCHHHHTT--------------------TCSEEESSEEEEEETTEEEEEESSCS-SCSS----------------C
T ss_pred CCCCCchhhhhh--------------------hhhchhHHHHHHhcCCcEEEEEccCC-cCCC----------------c
Confidence 999975421100 1122333222 2 34799999843 1100 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCceEcCHHHHHHHHHHCCCCceeeecccccccCceE
Q 011417 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLGNLVVRSHEVKDEGYEI 424 (486)
Q Consensus 365 ~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~~l~~~~~~~~iir~H~~~~~G~~~ 424 (486)
. .+..+.+.+.+.++..++ +++|-||+-......+
T Consensus 122 ~------------------------~~~~~~~~l~~~~~~~~~-~~vi~GHtH~~~~~~~ 156 (195)
T 1xm7_A 122 E------------------------RYPDRQEMVREIYFKENC-DLLIHGHVHWNREGIK 156 (195)
T ss_dssp C------------------------SCHHHHHHHHHHHHHTTC-SEEEECCCCCCSCC--
T ss_pred c------------------------cccchHHHHHHHHHHcCC-cEEEECCcCCCCcccc
Confidence 0 001245778888899999 9999999976555443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.44 E-value=1.5e-06 Score=81.80 Aligned_cols=109 Identities=7% Similarity=-0.018 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHH
Q 011417 7 ENSSVSRAEELKALANEAFR---A--K------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAI 68 (486)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~ 68 (486)
...+++.+..++..|..... . | ...+|...+++|++++|+ +..+|..+|..|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 34567788888888876653 1 3 367899999999999999 677999999999995 9999999
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 011417 69 QDASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND 115 (486)
Q Consensus 69 ~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~ 115 (486)
++|++|++++|+. ..+++..|..+.. .|++++|.+++++|++.+|..
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999975 9999999999987 599999999999999998774
No 227
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.40 E-value=1.8e-06 Score=82.91 Aligned_cols=126 Identities=9% Similarity=-0.019 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR 87 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~ 87 (486)
..++..+|.++...|++++|++.+.+++..+| .+.+++..++.++..+|+.+.|.+.+++..+.+|+ +-.....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44567999999999999999999999999887 88999999999999999999999999999999883 2334444
Q ss_pred H--HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 88 R--GAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 88 l--g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+ |.+....| ++++|...|+++.+..|+.......+. ++..+++ +++|...++
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~L~ 235 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHHHH
Confidence 4 44466666 999999999999887776333233333 5644544 788877776
No 228
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=98.40 E-value=3.3e-06 Score=82.26 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCceEEEccCCCC------------hHHHHHHHHHcCC-CCCCCCeEEcccccCCCCCh-HH-HHHHHHhchhcCCCeEE
Q 011417 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-VE-VILTLFAFKCMCPSAIY 285 (486)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~-~~~~~~~~~lGd~vdrG~~~-~e-~l~~l~~lk~~~p~~v~ 285 (486)
..++.+++|+|.. ...+.++++.... ....+.++++||++|.|... .+ +...+-.+....+..|+
T Consensus 25 ~~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~ 104 (330)
T 3ib7_A 25 DYVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELV 104 (330)
T ss_dssp SEEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEE
Confidence 4579999999962 5666666665432 12345699999999998642 22 22233323222234699
Q ss_pred EeccCCcc
Q 011417 286 LSRGNHES 293 (486)
Q Consensus 286 ~lrGNHE~ 293 (486)
+++||||.
T Consensus 105 ~v~GNHD~ 112 (330)
T 3ib7_A 105 WVMGNHDD 112 (330)
T ss_dssp ECCCTTSC
T ss_pred EeCCCCCC
Confidence 99999996
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.35 E-value=7.2e-06 Score=67.26 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHH
Q 011417 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFK 99 (486)
Q Consensus 25 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~ 99 (486)
........+...|.+++..++....+.+++|.++.+...... ++..++..+..+ | ..-+++|.+|..++++|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344556677788888888889999999999999999887665 999999988876 5 56789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011417 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (486)
Q Consensus 100 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~l 129 (486)
+|.++++..|+..|+|..+......+...+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987777766444
No 230
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.34 E-value=5.1e-07 Score=90.68 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (486)
++..+|..++..|+|++|+.+|.++ ..|..+|.++.++|+|++|++.++++ .++.+|.....++...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 6777777777777777777777765 35677777777777777777777776 3566666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcCCCC
Q 011417 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (486)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (486)
|+++.|..+... +..+| +-...+..+|...|. +++|+.+++ +++.+++.+.+.
T Consensus 191 ~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~--~eEai~lLe------------~aL~le~ah~~~ 243 (449)
T 1b89_A 191 KEFRLAQMCGLH-IVVHA---DELEELINYYQDRGY--FEELITMLE------------AALGLERAHMGM 243 (449)
T ss_dssp TCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSTTCCHHH
T ss_pred CcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCC--HHHHHHHHH------------HHhCCcHHHHHH
Confidence 666666555543 22333 223334445544333 666666666 677776655443
No 231
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.29 E-value=3.4e-06 Score=94.63 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--------------- 79 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------- 79 (486)
..+...|..++..|+|++|+.+|++| ..|..+|.+|.++|++++|++++++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999996 5899999999999999999999999855443
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 80 ----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 80 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+++.+..++..|...|.+++|+..+++++.++|.+...+..++.++...+-.+..+++.++.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 245566678888999999999999999999999999999999999998888777777777766
No 232
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.26 E-value=3.4e-06 Score=80.99 Aligned_cols=118 Identities=12% Similarity=-0.029 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHH--HHHHcc--CHHHHHHHHHHHHHhCCCC-
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANRAF--AHTKLE--EYGSAIQDASKAIEIDPRY- 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~--~~~~~g--~~~~A~~~~~~al~~~p~~- 81 (486)
+....++...+.++.+.|+.+.|.+.+++..+.+|+ +..+...++. +....| ++++|...|+++.+..|+.
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 467888899999999999999999999999999993 2344455544 466666 9999999999998888773
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhh
Q 011417 82 -PKGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 82 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~l~~ 131 (486)
...+++ ++..+|++++|.+.++++++. +|++++++.++..+...+++
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 334444 899999999999999988876 58899999888777766553
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=3.1e-06 Score=71.99 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 11 VSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 85 (486)
+...++.++.|.++.+.+ +.++|+..++++++.+ | +..++++++|..++++|+|++|+++++++++.+|++..+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 346788999999999988 7779999999999999 7 5689999999999999999999999999999999998887
Q ss_pred HHHHHH
Q 011417 86 YRRGAA 91 (486)
Q Consensus 86 ~~lg~~ 91 (486)
..+..+
T Consensus 109 ~Lk~~i 114 (152)
T 1pc2_A 109 ELERLI 114 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665433
No 234
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=3.1e-06 Score=85.14 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDP----- 79 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----- 79 (486)
.....++..+|..|...|++++|+++|++++...+... .+...+|.++...|++++|+..+++++...+
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 34456789999999999999999999999998766542 3466788888899999999999999987632
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 80 -RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 80 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
....++..+|.+|...|+|++|...+++++... +...+++..++.++..+++ +.+|...+.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 199 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT 199 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 336789999999999999999999999998763 2334677788888866665 788888776
No 235
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=98.23 E-value=3.7e-05 Score=72.54 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=46.3
Q ss_pred ceEEEccCCCCh------------HHHHHHHHHcC-CCCCCCCeEEcccccCCCCChH--HHHHHHHhchhcCCCeEEEe
Q 011417 223 HFTVCGDVHGQF------------YDLLNIFELNG-LPSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLS 287 (486)
Q Consensus 223 ~~~v~GDihG~~------------~~l~~~l~~~~-~~~~~~~~~~lGd~vdrG~~~~--e~l~~l~~lk~~~p~~v~~l 287 (486)
++.+++|+|+.. ..+.++++... ..+..+.++++||+++.|..+. ++...|-.+ +-.++.+
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~v 77 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYLI 77 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEEE
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEEE
Confidence 588999999985 56777776543 2233467999999999987432 222333222 3359999
Q ss_pred ccCCccc
Q 011417 288 RGNHESK 294 (486)
Q Consensus 288 rGNHE~~ 294 (486)
+||||..
T Consensus 78 ~GNHD~~ 84 (274)
T 3d03_A 78 PGNHDDK 84 (274)
T ss_dssp CCTTSCH
T ss_pred CCCCCCH
Confidence 9999974
No 236
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.21 E-value=9.6e-06 Score=79.34 Aligned_cols=108 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHHHHHHccCH-------HHHH-HHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011417 9 SSVSRAEELKALANEAFRAKKY-------SQAI-DLYS--QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~-------~~A~-~~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 78 (486)
.+|+.+.++..++.++.....+ .+++ ..++ .++..+|.++.++..+|..+...|++++|+..+++|+.++
T Consensus 228 lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 4677777777777777532111 1111 1222 1235679999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
| +..+|..+|.++...|++++|++.|++|++++|..+.
T Consensus 308 ~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7 4788899999999999999999999999999998864
No 237
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.5e-06 Score=85.86 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
|.+....|..+.+.|+|++|++.|.++++..|... .++.++|.+|...|++++|++.+++++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577889999999999999999999999887642 4689999999999999999999999998
Q ss_pred hCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 77 IDPRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 77 ~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..+.... +...++.++...|++++|+..+++++...+. ...++..++.++...++ +.+|...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 159 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN 159 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 7665433 4566788888999999999999999987432 24577888888866665 888888877
No 238
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.17 E-value=1.1e-05 Score=80.97 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 93 (486)
+..+..+|.++.+.|+|++|++.|++| .++.+|...+.++...|+++.|..+..+ +..+|++ ...+..+|.
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Ye 218 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQ 218 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHH
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHH
Confidence 345789999999999999999999999 5799999999999999999999888775 3344444 556889999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+.|++++|+..+++++.+++.+...+..++.++...+-++..+.+..+.
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888877888887776
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.15 E-value=6.2e-06 Score=77.57 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=84.5
Q ss_pred hCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q 011417 43 LNSQNAVYYANRAFAHTK---L--E------EYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD 104 (486)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~ 104 (486)
.+|+++++++=.|.+... . | ...+|...+++|+++||+ +..+|..+|.+|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 457777776666555432 1 2 357999999999999999 677999999999996 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHhhcCcccccccccccccccccccCCcC
Q 011417 105 FQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (486)
Q Consensus 105 ~~~al~~~p~~-~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (486)
|++|++++|+. .+.++.++..+... .+++++|..+++ +++...|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~-~gd~~~a~~~L~------------kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIP-LNNRAGFDEALD------------RALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTT-TTCHHHHHHHHH------------HHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHh-cCCHHHHHHHHH------------HHHcCCCCC
Confidence 99999999975 99999999887432 133677777777 788777654
No 240
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.94 E-value=2.3e-05 Score=79.42 Aligned_cols=90 Identities=8% Similarity=0.008 Sum_probs=74.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 5 ETENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
....++|..+..+.++|.+|..+|+|++|+.++++++++ +|+-+..+.+||.+|..+|++++|+..+++|++
T Consensus 320 ~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 320 RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999999976 344567799999999999999999999999997
Q ss_pred h-----CCCCHH---HHHHHHHHHHH
Q 011417 77 I-----DPRYPK---GYYRRGAAYLA 94 (486)
Q Consensus 77 ~-----~p~~~~---~~~~lg~~~~~ 94 (486)
+ .|+++. ++.+|+.+...
T Consensus 400 i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 400 IMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 5 566654 44556655543
No 241
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.92 E-value=5e-05 Score=76.88 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (486)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 77 (486)
...++|..+..+.++|.+|..+|+|++|+.+|++++++ +|+-+..+.+||.+|..+|++++|+..|++|+++
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999986 3555777999999999999999999999999975
Q ss_pred -----CCCCHHHH
Q 011417 78 -----DPRYPKGY 85 (486)
Q Consensus 78 -----~p~~~~~~ 85 (486)
.|+++.+-
T Consensus 412 ~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 412 MEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTCTTCHHHH
T ss_pred HHHHcCCCChHHH
Confidence 57776543
No 242
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=97.90 E-value=2.2e-05 Score=75.75 Aligned_cols=72 Identities=21% Similarity=0.073 Sum_probs=45.9
Q ss_pred CceEEEccCCCCh-------------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCC----hHHHHHHHHhchh
Q 011417 222 KHFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKC 278 (486)
Q Consensus 222 ~~~~v~GDihG~~-------------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~----~~e~l~~l~~lk~ 278 (486)
.++.+++|+|... ..+.++++.... ...+.++++||+++.|.. +.+.+..+..+-.
T Consensus 6 ~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~ 84 (322)
T 2nxf_A 6 FTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR-ERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD 84 (322)
T ss_dssp EEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH
T ss_pred eEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHH
Confidence 3589999999765 445555554322 234569999999998852 1333333332222
Q ss_pred cCCCeEEEeccCCccc
Q 011417 279 MCPSAIYLSRGNHESK 294 (486)
Q Consensus 279 ~~p~~v~~lrGNHE~~ 294 (486)
..+..+++++||||..
T Consensus 85 ~~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 85 ACSVDVHHVWGNHEFY 100 (322)
T ss_dssp TTCSEEEECCCHHHHH
T ss_pred hcCCcEEEecCCCCcc
Confidence 2356799999999984
No 243
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.90 E-value=0.00025 Score=75.86 Aligned_cols=178 Identities=12% Similarity=0.001 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHccCHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSAI 68 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~~A~ 68 (486)
|.....+...+......|++++|...|++++.. .|. ...+|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 444566788888899999999999999999975 253 3568999999999999999999
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcccccc
Q 011417 69 QDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERH 146 (486)
Q Consensus 69 ~~~~~al~~-~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~~~~~ 146 (486)
..|.+|++. .+.....|...|.+....++ ++.|.+.|+++++..|+++..+...+......+ +.+.|..+++
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~--~~~~AR~lfe---- 528 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN--EESQVKSLFE---- 528 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CHHHHHHHHH----
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC--CHHHHHHHHH----
Confidence 999999998 55567888888887777654 899999999999999999998877777665444 4788888888
Q ss_pred cccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhcCCC
Q 011417 147 SVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (486)
Q Consensus 147 ~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~ep~ 212 (486)
+++...|. .. -.......++..-...+. .+.+..+..++.+.+.+++.
T Consensus 529 --------ral~~~~~-------~~-~~~~lw~~~~~fE~~~G~--~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 529 --------SSIDKISD-------SH-LLKMIFQKVIFFESKVGS--LNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp --------HHTTTSSS-------TT-HHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHSTTCCH
T ss_pred --------HHHHhcCC-------HH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcH
Confidence 66655442 00 011222233333223332 33477777777777666543
No 244
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=97.80 E-value=0.00012 Score=69.61 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=44.4
Q ss_pred CCceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--HHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 221 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 221 ~~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~--~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
+.++++++|+|+....+ ..+ ..+.+++.||++++|... .+++.+|..+. . ..++++.||||..
T Consensus 59 ~mri~~iSD~H~~~~~l-------~i~-~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~--~-~~v~~V~GNHD~~ 123 (296)
T 3rl5_A 59 HTRFVCISDTRSRTDGI-------QMP-YGDILLHTGDFTELGLPSEVKKFNDWLGNLP--Y-EYKIVIAGNHELT 123 (296)
T ss_dssp EEEEEEEBCCTTCCTTC-------CCC-SCSEEEECSCCSSSCCHHHHHHHHHHHHTSC--C-SEEEECCCTTCGG
T ss_pred CeEEEEEeeCCCCcchh-------ccC-CCCEEEECCcccCCCCHHHHHHHHHHHHhCC--C-CeEEEEcCCcccc
Confidence 46799999999987643 223 456799999999999742 23444444432 2 3589999999974
No 245
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=97.77 E-value=1.5e-05 Score=74.87 Aligned_cols=72 Identities=6% Similarity=0.068 Sum_probs=50.6
Q ss_pred CceEEEccCCCChHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--------------------------HHHHHHHHh
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--------------------------VEVILTLFA 275 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~--------------------------~e~l~~l~~ 275 (486)
.++.+++|+|+....+.++++.... ...+.++++||++|+|+.+ .+...++-.
T Consensus 6 mri~~iSDlH~~~~~~~~~l~~~~~-~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~ 84 (260)
T 2yvt_A 6 RKVLAIKNFKERFDLLPKLKGVIAE-KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFRE 84 (260)
T ss_dssp CEEEEEECCTTCGGGHHHHHHHHHH-HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCCChHHHHHHHHHHHh-cCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Confidence 4699999999999888888776421 1245699999999999753 123333333
Q ss_pred chhcCCCeEEEeccCCcccc
Q 011417 276 FKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 276 lk~~~p~~v~~lrGNHE~~~ 295 (486)
|+. .+..|++++||||...
T Consensus 85 l~~-~~~pv~~v~GNHD~~~ 103 (260)
T 2yvt_A 85 IGE-LGVKTFVVPGKNDAPL 103 (260)
T ss_dssp HHT-TCSEEEEECCTTSCCH
T ss_pred HHh-cCCcEEEEcCCCCchh
Confidence 432 2456999999999754
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.68 E-value=0.0016 Score=54.16 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (486)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (486)
.-...+.+++|.++.+..+ ..+++..++..+...|. .-+++|.+|..++++|+|++|.++.+..|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4568999999999998775 45899999999998884 5789999999999999999999999999999999999887
Q ss_pred HHHHHHHHH
Q 011417 121 KVKECEKAV 129 (486)
Q Consensus 121 ~l~~~~~~l 129 (486)
....+...+
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666444
No 247
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=97.62 E-value=0.0024 Score=64.65 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCceEEEccCCCC--------------------------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--HHHHHH
Q 011417 221 GKHFTVCGDVHGQ--------------------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILT 272 (486)
Q Consensus 221 ~~~~~v~GDihG~--------------------------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~--~e~l~~ 272 (486)
..++.+++|+|.. ...+..+++..... ..+.++++||+++.|... .++...
T Consensus 39 ~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~d~vi~~GDl~~~~~~~~~~~~~~~ 117 (443)
T 2xmo_A 39 NLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESK-KTDVLIISGDLTNNGEKTSHEELAKK 117 (443)
T ss_dssp CEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHH-TCSEEEEESCCBSSCCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHc-CCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 3468999999974 23444454432111 235699999999998743 223333
Q ss_pred HHhchhcCCCeEEEeccCCcccc
Q 011417 273 LFAFKCMCPSAIYLSRGNHESKS 295 (486)
Q Consensus 273 l~~lk~~~p~~v~~lrGNHE~~~ 295 (486)
|-.+. ..+..|+.++||||...
T Consensus 118 l~~l~-~~~~~~~~v~GNHD~~~ 139 (443)
T 2xmo_A 118 LTQVE-KNGTQVFVVPGNHDINN 139 (443)
T ss_dssp HHHHH-HTTCEEEEECCTTTSSC
T ss_pred HHHHH-hCCCeEEEECCcCCCCC
Confidence 44442 12456999999999753
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.61 E-value=0.00043 Score=59.27 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC--
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR-- 80 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-- 80 (486)
.+++.....++..+.|+.|+.....++.+..++ ..++..+|.+++..++|..|...|++|++.. ++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778888999999999999999977654322 3578999999999999999999999998642 11
Q ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 81 --------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (486)
Q Consensus 81 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 126 (486)
..+..|.+|.||.+++++++|+..++..- ..-..+.....|+.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 12677889999999999999998876431 1224555555555544
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.60 E-value=0.00059 Score=56.05 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 46 QNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
-.+.+.+++|.++.+..+ ..+++..++..+..+|. .-+++|.+|..++++|+|++|.++.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 358899999999998775 45899999999998884 57899999999999999999999999999999999999888
Q ss_pred HHHHHHHHh
Q 011417 122 VKECEKAVK 130 (486)
Q Consensus 122 l~~~~~~l~ 130 (486)
...+..++.
T Consensus 118 k~~Ie~ki~ 126 (134)
T 3o48_A 118 KSMVEDKIQ 126 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777765554
No 250
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.52 E-value=0.00021 Score=76.36 Aligned_cols=81 Identities=12% Similarity=0.001 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 31 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
+.....|++|+...|.++.+|...|..+...|+.++|. ..|++|+...|.+...|..++......|++++|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777775 77777777777777777777777777777777777777777
Q ss_pred Hh
Q 011417 110 KL 111 (486)
Q Consensus 110 ~~ 111 (486)
..
T Consensus 406 ~~ 407 (679)
T 4e6h_A 406 DR 407 (679)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 251
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.48 E-value=0.0038 Score=64.23 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA---------------------------------- 57 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~---------------------------------- 57 (486)
..+..|...+..+...|+.++|...|++|+.. |.+...|...+..
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 33667888888888888999999999999988 8875554433322
Q ss_pred ------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011417 58 ------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (486)
Q Consensus 58 ------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~ 130 (486)
..+.+..+.|...|++| ...+.....|...|.+....+ +.+.|...|+++++..|+.++.+..........+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence 22356677788888888 433335566666666666555 5888888888888888888776665555443333
Q ss_pred hHHHHHhhcCcccccccccccccccccccCCcCCCCcccCCCccHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHhc-
Q 011417 131 KLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA- 209 (486)
Q Consensus 131 ~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~l~e~l~~~~~l~~~e~~~ll~~a~~~l~~- 209 (486)
. .+.|...++ ++. . .......+++.-...+ +.+.+..++.++.+.+..
T Consensus 369 ~--~~~aR~l~e------------r~~------------k---~~~lw~~~~~fE~~~G--~~~~~r~v~~~~~~~~~~~ 417 (493)
T 2uy1_A 369 D--EENARALFK------------RLE------------K---TSRMWDSMIEYEFMVG--SMELFRELVDQKMDAIKAD 417 (493)
T ss_dssp C--HHHHHHHHH------------HSC------------C---BHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHTT
T ss_pred C--HHHHHHHHH------------HHH------------H---HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhccc
Confidence 3 566666666 221 0 1222333333222222 334567778888887773
Q ss_pred ---CCCcccccCCCCCceEEEccCCCChHHHHHHHHHcCC
Q 011417 210 ---LPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGL 246 (486)
Q Consensus 210 ---ep~~~~i~~~~~~~~~v~GDihG~~~~l~~~l~~~~~ 246 (486)
+|..+- . ...-+-..||.+.+++.-.+....
T Consensus 418 ~~~~~~~~~-~-----~~~~fe~~~g~l~~~~~~~~~~~~ 451 (493)
T 2uy1_A 418 AILPPLPPR-E-----HNVQMEGILGRYHCFLDSFNFLDL 451 (493)
T ss_dssp CCBCCCCCC--------CCCCCHHHHHHHHHHHHHCBTTB
T ss_pred ccCCccccc-c-----cHHHHHHHhhhHHHHHHHhhhhcc
Confidence 232221 1 122233556777777776655443
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.32 E-value=0.0007 Score=55.39 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 86 (486)
...++.++.|.++.+..+... ++..++..++.+ | ..-+..+.+|..++++|+|++|..+++..++.+|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788999999998877665 999999999887 5 56788999999999999999999999999999999998876
Q ss_pred HHHHH
Q 011417 87 RRGAA 91 (486)
Q Consensus 87 ~lg~~ 91 (486)
....+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.25 E-value=0.0034 Score=52.60 Aligned_cols=108 Identities=17% Similarity=0.040 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
.|.+.+.|.......-+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 466778899999998888999 88999999999987753 5567777744 56799999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 76 EIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
++....+..|...|..-.++|+...|.+.+.+|+.+.|...+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 9988899999999999999999999999999999999987664
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.03 E-value=0.0048 Score=50.64 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011417 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (486)
.+++.++.|.++.+..+ ..+++..++..++.+|. .-+.++.+|..++++|+|++|..+.+..++.+|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 46788999999988765 45799999999999984 578899999999999999999999999999999998886655
Q ss_pred HHHH
Q 011417 89 GAAY 92 (486)
Q Consensus 89 g~~~ 92 (486)
..+-
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.94 E-value=0.011 Score=49.18 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 12 SRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 87 (486)
-.+++.++.|.++.+..+ ..+++..++..++..|. .-+..+.+|..++++|+|++|..+.+..++.+|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 457788999999998765 45799999999999984 57889999999999999999999999999999999888655
Q ss_pred HHHH
Q 011417 88 RGAA 91 (486)
Q Consensus 88 lg~~ 91 (486)
...+
T Consensus 117 k~~I 120 (144)
T 1y8m_A 117 KSMV 120 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 256
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=96.77 E-value=0.0017 Score=64.55 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=48.0
Q ss_pred CCceEEEccCCCCh-------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHH----HHHHHhchhcCCCe
Q 011417 221 GKHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEV----ILTLFAFKCMCPSA 283 (486)
Q Consensus 221 ~~~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~----l~~l~~lk~~~p~~ 283 (486)
..++..++|+|... ..+.++++.... ...+.+++.||++|++.-+.+. ...|..|+. .+-.
T Consensus 20 ~mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~-~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~p 97 (386)
T 3av0_A 20 HMMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILE-IKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIK 97 (386)
T ss_dssp CCEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCE
T ss_pred CeEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHH-cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCc
Confidence 45799999999762 345556555422 2345699999999999544433 333444432 2357
Q ss_pred EEEeccCCcccc
Q 011417 284 IYLSRGNHESKS 295 (486)
Q Consensus 284 v~~lrGNHE~~~ 295 (486)
|+++.||||...
T Consensus 98 v~~v~GNHD~~~ 109 (386)
T 3av0_A 98 VYIVAGNHEMPR 109 (386)
T ss_dssp EEECCCGGGSCS
T ss_pred EEEEcCCCCCCc
Confidence 999999999754
No 257
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=96.69 E-value=0.00083 Score=65.53 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCceEEEccCC-C----C-----------hHHHHHHHHHcCCCCCCCCeEEccc-ccCCCCChHHH----HHHHHhchhc
Q 011417 221 GKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEV----ILTLFAFKCM 279 (486)
Q Consensus 221 ~~~~~v~GDih-G----~-----------~~~l~~~l~~~~~~~~~~~~~~lGd-~vdrG~~~~e~----l~~l~~lk~~ 279 (486)
..+++.++|+| | + ...+.++++..... ..+.+++.|| ++|++..+.+. ..+|..|+..
T Consensus 18 ~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~ 96 (336)
T 2q8u_A 18 ELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT 96 (336)
T ss_dssp EEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 45799999999 7 3 23344554433211 2346899999 99999877764 3444445422
Q ss_pred CCCeEEEeccCCcccc
Q 011417 280 CPSAIYLSRGNHESKS 295 (486)
Q Consensus 280 ~p~~v~~lrGNHE~~~ 295 (486)
-.|+++.||||...
T Consensus 97 --~pv~~i~GNHD~~~ 110 (336)
T 2q8u_A 97 --APVVVLPGNHDWKG 110 (336)
T ss_dssp --SCEEECCC------
T ss_pred --CCEEEECCCCCccc
Confidence 35999999999754
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.0038 Score=53.38 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------KGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PND- 115 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~- 115 (486)
.++..-...++..+.|+.|+-....++.+..+++ .++..+|.+++..++|..|...|++|++.. +.+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455556778899999999999999877643332 478999999999999999999999997652 111
Q ss_pred ---------------------HHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 116 ---------------------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 116 ---------------------~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+..+.++.|+..+++ +++|+..++
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~--~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ--DKDAIAILD 146 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCC--HHHHHHHHh
Confidence 2678999999988877 799998877
No 259
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=96.61 E-value=0.0022 Score=62.39 Aligned_cols=70 Identities=20% Similarity=0.254 Sum_probs=44.3
Q ss_pred ceEEEccCCCCh-------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHH----HHhchhcCCCeEE
Q 011417 223 HFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILT----LFAFKCMCPSAIY 285 (486)
Q Consensus 223 ~~~v~GDihG~~-------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~----l~~lk~~~p~~v~ 285 (486)
+++.++|+|... ..+.++++.... ...+.+++.||++|++..+.+.+.. |-.|+. .+-.|+
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~-~~~~v~ 79 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQ-ENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE-HSIPVF 79 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHH-TTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT-TTCCEE
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHh-cCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH-CCCcEE
Confidence 588999999864 234444443321 1235699999999998555444333 333321 234699
Q ss_pred EeccCCccc
Q 011417 286 LSRGNHESK 294 (486)
Q Consensus 286 ~lrGNHE~~ 294 (486)
++.||||..
T Consensus 80 ~v~GNHD~~ 88 (333)
T 1ii7_A 80 AIEGNHDRT 88 (333)
T ss_dssp EECCTTTCC
T ss_pred EeCCcCCCc
Confidence 999999975
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.27 E-value=0.073 Score=52.72 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CC--------------HHHHHHHHHHHHHccCHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNS--------QN--------------AVYYANRAFAHTKLEEYGSAIQ 69 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~--------------~~~~~~lg~~~~~~g~~~~A~~ 69 (486)
.....+...|......|+.++|...+.+|+.+.. .. ..+...++.++...|++.+|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444556666667778999999999999998731 11 1223345667778889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 70 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
.+++++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999988998898999999999999988887755
No 261
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=96.23 E-value=0.039 Score=52.35 Aligned_cols=73 Identities=16% Similarity=0.024 Sum_probs=39.7
Q ss_pred CceEEEccCCCCh---------HHHHHHHHHcCCCCCCCCeEEcccccCC-CC---ChHHHHHHHHhch---hcCCCeEE
Q 011417 222 KHFTVCGDVHGQF---------YDLLNIFELNGLPSEENPYLFNGDFVDR-GS---FSVEVILTLFAFK---CMCPSAIY 285 (486)
Q Consensus 222 ~~~~v~GDihG~~---------~~l~~~l~~~~~~~~~~~~~~lGd~vdr-G~---~~~e~l~~l~~lk---~~~p~~v~ 285 (486)
.++.++||+|... ..+.+.+...-.....+-+|++||+++. |. ...+....+..+. ...+--++
T Consensus 7 ~~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 86 (313)
T 1ute_A 7 LRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWH 86 (313)
T ss_dssp EEEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEE
T ss_pred eEEEEEcccCCCCCccccCchHHHHHHHHHHHHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCEE
Confidence 4699999999863 2333433321001123569999999743 21 1112222222111 11145699
Q ss_pred EeccCCccc
Q 011417 286 LSRGNHESK 294 (486)
Q Consensus 286 ~lrGNHE~~ 294 (486)
.++||||..
T Consensus 87 ~v~GNHD~~ 95 (313)
T 1ute_A 87 VLAGNHDHL 95 (313)
T ss_dssp ECCCHHHHH
T ss_pred EECCCCccC
Confidence 999999974
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.07 E-value=0.038 Score=46.34 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=75.0
Q ss_pred HhCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011417 42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (486)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 107 (486)
-+.|++++.|..........|+. ++-++.|++|+..-|. ....|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 46899999999999999988998 8999999999987664 23456666644 577999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 108 al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+++++... +...++.+...+.+++..+|...+.
T Consensus 86 a~~~hKkF--AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 86 ARANCKKF--AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHHHCTTB--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhHHH--HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99996666 4455555555566776788877777
No 263
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.79 E-value=0.2 Score=51.24 Aligned_cols=114 Identities=11% Similarity=-0.025 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 91 (486)
....|...+....+.++.+.|...|++| +..+.....|...|......+ +.+.|...|+++++..|+.+..|...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777788887889999999999999 443446778877787777766 59999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011417 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~ 131 (486)
....|+.+.|...|+++ +.....|..........|.
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence 88999999999999998 3455666666655544444
No 264
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.66 E-value=0.18 Score=51.71 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP-RYPKGYYRRGAA 91 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 91 (486)
..++..+-..|.+.|++++|.+.|++..+.. .-+...|..+-..|.+.|+.++|.+.+++..+..- .+...|..+-.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4567788889999999999999999987653 23588889999999999999999999999887642 367788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q 011417 92 YLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 92 ~~~~g~~~~A~~~~~~al~~~ 112 (486)
+.+.|+.++|.+.+++.-+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT
T ss_pred HhhCCCHHHHHHHHHHHHHhC
Confidence 999999999999999987653
No 265
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.51 E-value=0.12 Score=43.97 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------C
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----------------D 78 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----------------~ 78 (486)
--..++..++-.|+|..|+..+. .-+.+.+.+.-+.||..+++|.+|+.++++.++- |
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 34567778888899998887664 3466788888889999999999999999999832 2
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011417 79 PRYPKG-YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (486)
Q Consensus 79 p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (486)
|.+-+. +..+|.++...|+-++|+.+|.......|-.+.+
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 334443 5557899999999999999999998888765543
No 266
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=95.45 E-value=0.007 Score=59.97 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=43.7
Q ss_pred ceEEEccCCCChH----------------HHHHHHHHcCCCCCCCCeEEccccc-CCCCChHHHHHH----HHhchhcCC
Q 011417 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVILT----LFAFKCMCP 281 (486)
Q Consensus 223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGd~v-drG~~~~e~l~~----l~~lk~~~p 281 (486)
+++.++|+|.... .+.++++.... ...+.+++.||++ |++..+.+.+.. |-.|+..
T Consensus 2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~-~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-- 78 (379)
T 3tho_B 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEK-REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-- 78 (379)
T ss_dssp EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHH-HTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHh-cCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--
Confidence 5788899996543 34444433211 1234699999999 988777654443 3334322
Q ss_pred CeEEEeccCCccc
Q 011417 282 SAIYLSRGNHESK 294 (486)
Q Consensus 282 ~~v~~lrGNHE~~ 294 (486)
..|++++||||..
T Consensus 79 ~~v~~i~GNHD~~ 91 (379)
T 3tho_B 79 APVVVLPGNQDWK 91 (379)
T ss_dssp SCEEECCCTTSCT
T ss_pred CCEEEEcCCCccc
Confidence 4699999999943
No 267
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=95.24 E-value=0.022 Score=57.40 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCceEEEccCCCC------------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHH
Q 011417 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 274 (486)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~ 274 (486)
..+++.++|+|-. ...|.++++.... ...+.+++.||++|++.-+.+++..++
T Consensus 76 ~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~-~~~D~VliaGDLfd~~~ps~~a~~~~~ 140 (472)
T 4fbk_A 76 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARE-RDVDMILLGGDIFHDNKPSRKALYQAL 140 (472)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCSBSSSSCCHHHHHHHH
T ss_pred CeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHh-cCCCEEEEcCccccCCCCCHHHHHHHH
Confidence 3468999999954 2245555554322 234569999999999999988877544
No 268
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.18 E-value=0.5 Score=48.37 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 29 KYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 29 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
+.++|.+.|++..+.. .-+...|..+-.+|.+.|++++|.+.+++..+.. ..+...|..+-.+|.+.|+.++|.+.|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 4788999998877653 2358889999999999999999999999988763 3467888889999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 107 QVKKLSP-NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 107 ~al~~~p-~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+..+..- -+...+..+-.++...++ .++|..+++
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~--~d~A~~ll~ 199 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKN--ADKVYKTLQ 199 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCC--HHHHHHHHH
Confidence 9987642 244556666666655555 678877766
No 269
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.17 E-value=0.11 Score=53.08 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011417 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (486)
Q Consensus 50 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (486)
.+..+|........+..|..+|.+|+.+.|++..+|..||.+....|+.-+|+-+|-+++......+.+..++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 455678888888889999999999999999999999999999999999999999999999888889999988888764
No 270
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=95.16 E-value=0.023 Score=56.67 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=37.7
Q ss_pred CCceEEEccCCCC------------hHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHh
Q 011417 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275 (486)
Q Consensus 221 ~~~~~v~GDihG~------------~~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~ 275 (486)
..+++.++|+|-. ...+.++++.... ...+.+++.||++|++.-+.+++..++.
T Consensus 13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~-~~~D~VliaGDLfd~~~p~~~~~~~~~~ 78 (417)
T 4fbw_A 13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARE-RDVDMILLGGDIFHDNKPSRKALYQALR 78 (417)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHh-cCCCEEEEcCccccCCCCCHHHHHHHHH
Confidence 4579999999964 2345555554322 2345699999999999999887766543
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.16 E-value=0.24 Score=45.73 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=58.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 84 (486)
..+++.|+.++|++..+..++.+|.++.....+-..+.-.|+++.|..-++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 456788999999999999999999999999999999999999999999999999999987543
No 272
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.073 Score=57.05 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 55 AFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
+.-+...|+|+-|+...++|+...|..-.+|+.|+.+|..+|+|+.|+-.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 3334444455555555555555555555555555555555555555544433
No 273
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=95.04 E-value=0.022 Score=56.99 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCceEEEccCCCCh------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhc
Q 011417 221 GKHFTVCGDVHGQF------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAF 276 (486)
Q Consensus 221 ~~~~~v~GDihG~~------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~~e~l~~l~~l 276 (486)
..+++.++|+|-.. ..+.++++.... ...+.+++.||++|++..+.+++..++..
T Consensus 32 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~-~~~D~VliaGDlfd~~~~~~~~~~~~~~~ 98 (431)
T 3t1i_A 32 TFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQE-NEVDFILLGGDLFHENKPSRKTLHTCLEL 98 (431)
T ss_dssp EEEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBSSSSCCHHHHHHHHHH
T ss_pred CEEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhh-cCCCEEEEcCccccCCCCCHHHHHHHHHH
Confidence 34689999999432 244455543322 23456999999999999888877766543
No 274
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.055 Score=57.96 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=25.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI 68 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 68 (486)
+...+..+..+|+|+.|+++.++|+...|..-..|+.|+.+|..+|+|+.|+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 3334444444455555555555555555555555555555555555554444
No 275
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.80 E-value=0.14 Score=52.17 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (486)
..+..+|....-...+..|..+|.+|+.+.|++...|..||.+....|+.-+|+-+|-+++......+.+.-++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35677899988899999999999999999999999999999999999999999999999999888899999999887765
Q ss_pred c
Q 011417 95 M 95 (486)
Q Consensus 95 ~ 95 (486)
.
T Consensus 233 ~ 233 (497)
T 1ya0_A 233 A 233 (497)
T ss_dssp H
T ss_pred H
Confidence 3
No 276
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=94.65 E-value=0.039 Score=55.36 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=42.4
Q ss_pred CceEEEccCCCChHHHHHHHHHc-CCCCCCCCeEEcccccCCCCC------hH-HHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSF------SV-EVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGd~vdrG~~------~~-e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
.++.++||+|....... .++.. ..+...+-++++||+++.+.. .. +...++-.+... --++.+.||||.
T Consensus 120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~~--~P~~~v~GNHD~ 196 (424)
T 2qfp_A 120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAY--QPWIWTAGNHEI 196 (424)
T ss_dssp EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTT--SCEEECCCHHHH
T ss_pred eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHhc--CCeEeecCCccc
Confidence 46899999998765432 33322 222244679999999986421 11 122233333322 358889999997
Q ss_pred cc
Q 011417 294 KS 295 (486)
Q Consensus 294 ~~ 295 (486)
..
T Consensus 197 ~~ 198 (424)
T 2qfp_A 197 EF 198 (424)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 277
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=93.84 E-value=0.065 Score=53.77 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=40.5
Q ss_pred CceEEEccCCCChHHHHHHHHHc-CCCCCCCCeEEcccccCCCCC-----h-HH-HHHHHHhchhcCCCeEEEeccCCcc
Q 011417 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSF-----S-VE-VILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 222 ~~~~v~GDihG~~~~l~~~l~~~-~~~~~~~~~~~lGd~vdrG~~-----~-~e-~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
.++.++||+|...... ..++.. ..+...+-++++||+++.+.. . .+ ....+-.+.. .--++.+.||||.
T Consensus 127 ~~f~~~gD~~~~~~~~-~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~--~~P~~~v~GNHD~ 203 (426)
T 1xzw_A 127 YVFGLIGDIGQTHDSN-TTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA--YQPWIWTAGNHEI 203 (426)
T ss_dssp EEEEEECSCTTBHHHH-HHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEECCCCGGGC
T ss_pred eEEEEEEeCCCCCchH-HHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh--cCCEEEecccccc
Confidence 4689999999765322 222221 122234569999999965321 1 11 2223333332 2348889999997
Q ss_pred cc
Q 011417 294 KS 295 (486)
Q Consensus 294 ~~ 295 (486)
..
T Consensus 204 ~~ 205 (426)
T 1xzw_A 204 DY 205 (426)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.31 E-value=0.75 Score=45.34 Aligned_cols=94 Identities=15% Similarity=0.004 Sum_probs=75.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC----HHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PRY----PKG 84 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~ 84 (486)
..+|..|+..|+|.+|++.+++.++.... -.+++..-..+|..++++.++.+.+.+|.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999998875322 25667778889999999999999999987653 122 234
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 011417 85 YYRRGAAYL-AMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 85 ~~~lg~~~~-~~g~~~~A~~~~~~al~~ 111 (486)
...-|.++. ..++|.+|..+|-.+++-
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 556688999 899999999999998754
No 279
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.64 E-value=0.44 Score=47.00 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
.++..++..+...|++.+|+..+++++..+|-+..+|..+-.++...|+..+|++.|++.-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566778888999999999999999999999999999999999999999999999988755
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.55 E-value=3.2 Score=35.45 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--L---------------NSQNAV-YYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.+.+.+-.+.+|.+.++|..|+.++++.++ + +|.+.+ .+..+|..+.+.|.-++|+.++...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 345678889999999999999999999993 2 344444 4666799999999999999999998
Q ss_pred HHhCC
Q 011417 75 IEIDP 79 (486)
Q Consensus 75 l~~~p 79 (486)
...+|
T Consensus 141 f~~~~ 145 (242)
T 3kae_A 141 FGKSF 145 (242)
T ss_dssp HHHCC
T ss_pred cCCcc
Confidence 76654
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.46 E-value=1 Score=45.10 Aligned_cols=99 Identities=11% Similarity=-0.090 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCH----HHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYP----KGY 85 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~~ 85 (486)
.++..+|..|++.|++++|.+.|.++...... -...+..+..++...+++..+...++++.... ..++ ...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35678999999999999999999998876433 36788889999999999999999999997652 2222 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011417 86 YRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (486)
Q Consensus 86 ~~lg~~~~~~g~~~~A~~~~~~al~~~p 113 (486)
...|..+...++|.+|...|-.++....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 5567888899999999999998887643
No 282
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.46 E-value=1.7 Score=46.62 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 23 EAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 74 (486)
.....|++++|.+..+.. + +...|..+|..+.+.++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~~~---~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDE---S--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHTTC---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhh---C--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345566666666655432 2 1356666666666666666666666664
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.02 E-value=1.2 Score=41.22 Aligned_cols=64 Identities=19% Similarity=0.066 Sum_probs=58.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011417 56 FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (486)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (486)
..+.+.|+.++|++..+..++.+|.++.....+-.++.-.|+++.|.+-++.+.+++|+....-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 3456889999999999999999999999999999999999999999999999999999886543
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.88 E-value=4 Score=40.85 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELN--SQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRYP 82 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~ 82 (486)
+.+.....+|..+...|++.+|...++...... .. -.+.+......|...+++..|...++++.. ..+..+
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 456777899999999999999999999876431 11 156788888999999999999999998742 233433
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 83 ----KGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 83 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
..+...|..+...++|.+|..+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35666789999999999999999999865
No 285
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.16 E-value=4.8 Score=44.41 Aligned_cols=101 Identities=7% Similarity=-0.036 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYY 86 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 86 (486)
..-..+..+-..|.+.|+.++|...+.+.-+. ..-+...|..+-..|.+.|+.++|.+.|++..+.. ..+...|.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 33456888889999999999999999764321 23458899999999999999999999999988753 34677888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 011417 87 RRGAAYLAMGK-FKEALKDFQQVKKLS 112 (486)
Q Consensus 87 ~lg~~~~~~g~-~~~A~~~~~~al~~~ 112 (486)
.+-.++.+.|+ .++|.+.|++..+..
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888999998 478899999988764
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.21 E-value=2.3 Score=41.85 Aligned_cols=130 Identities=10% Similarity=0.019 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------------------h---CCCCH------------------H---
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE-------------------L---NSQNA------------------V--- 49 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-------------------~---~p~~~------------------~--- 49 (486)
.-.+.+.+|..|.+.|++++-.+++..... . -|+.. .
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988777665432 1 12221 1
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH
Q 011417 50 ---YYANRAFAHTKLEEYGSAIQDASKAIEIDP--RY----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PNDPD 117 (486)
Q Consensus 50 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~ 117 (486)
.-..+|..|+..|+|.+|...+.+.++.-. ++ .+.+..-..+|..++++.++...+.+|.... +.+|.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 122689999999999999999999886421 12 3556777889999999999999999987664 23343
Q ss_pred H--HHHHHHHHHHH-hhHHHHHhhcCcc
Q 011417 118 A--AQKVKECEKAV-KKLKFEEAIAVPE 142 (486)
Q Consensus 118 ~--~~~l~~~~~~l-~~~~~~~A~~~~~ 142 (486)
. ..........+ ..++|.+|...|-
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 2 22222222334 4445666665544
No 287
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=88.90 E-value=0.13 Score=49.93 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=40.6
Q ss_pred ceEEEccCCCChHHHHH---HHHHcCCCCCCCCeEEcccccCCCCChH------HHHHHHHhch-hcCCCeEEEeccCCc
Q 011417 223 HFTVCGDVHGQFYDLLN---IFELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLSRGNHE 292 (486)
Q Consensus 223 ~~~v~GDihG~~~~l~~---~l~~~~~~~~~~~~~~lGd~vdrG~~~~------e~l~~l~~lk-~~~p~~v~~lrGNHE 292 (486)
+++++||.|.....-.. .+.........+-++++||.++.|..+. +.+.-++.-. ...+--++.+.||||
T Consensus 5 ~f~~igD~g~g~~~q~~va~~m~~~~~~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlGNHD 84 (342)
T 3tgh_A 5 RFASLGDWGKDTKGQILNAKYFKQFIKNERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRD 84 (342)
T ss_dssp EEEECCSCBSCCHHHHHHHHHHHHHHHHTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCCHHH
T ss_pred EEEEEecCCCCCchHHHHHHHHHHHHhhcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCCCCc
Confidence 58999999975432221 1111100123456999999998887532 2222232211 123335799999999
Q ss_pred cc
Q 011417 293 SK 294 (486)
Q Consensus 293 ~~ 294 (486)
..
T Consensus 85 ~~ 86 (342)
T 3tgh_A 85 WT 86 (342)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 288
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.82 E-value=1.9 Score=46.33 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=84.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 97 (486)
...+..+.+.|.+++|++..+ ++...+ ......|++++|.+..+ ..++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 455556667788888876552 233333 34578999999998864 34778999999999999999
Q ss_pred HHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc-cccccccccccccc
Q 011417 98 FKEALKDFQQV--------KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE-SERHSVADSIDYQS 156 (486)
Q Consensus 98 ~~~A~~~~~~a--------l~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~-~~~~~~a~~~~~~~ 156 (486)
++.|.++|.++ +.....+.+....++......+. ++.|...+. .++.++|.+.+.+.
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK--FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 99999999985 22235677777777766654444 666664443 56777776665544
No 289
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.36 E-value=4.2 Score=35.02 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=42.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (486)
Q Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 75 (486)
....+.|+++.|.+..++. ++...|..+|......|+++-|..+|.++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3446779999999987765 778999999999999999999999998863
No 290
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.68 E-value=2.5 Score=47.90 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------------------- 77 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------- 77 (486)
+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|++|-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666777766644 34567888888899999999999999999999987311
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH----HHHHHHHHHHHHhhHHHHHhhcCc
Q 011417 78 -DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN-DPD----AAQKVKECEKAVKKLKFEEAIAVP 141 (486)
Q Consensus 78 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~----~~~~l~~~~~~l~~~~~~~A~~~~ 141 (486)
....+..|+....++.+.+.++.+++..+.|++..+. ++. .|..+-.....+++ |++|....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~--ye~Ay~aL 961 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK--FDAAHVAL 961 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC--SGGGGHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC--HHHHHHHH
Confidence 0112355677788899999999999999999988754 432 33444444433433 55554433
No 291
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.55 E-value=1 Score=51.10 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIEL-----------------------NSQNAVYYANRAFAHTKLEEYGSAIQDA 71 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 71 (486)
...+.+|.+++..|++++|..+|++|-.- ....+..|..+...+.+.+.++.+++..
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34589999999999999999999887321 1112466788888899999999999999
Q ss_pred HHHHHhCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011417 72 SKAIEIDPR-YP----KGYYRRGAAYLAMGKFKEALKDFQQV 108 (486)
Q Consensus 72 ~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 108 (486)
+.|++..+. +. ..|.++=..+..+|+|++|...+...
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 999987643 32 25778888999999999998877543
No 292
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=86.53 E-value=0.39 Score=49.50 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=39.3
Q ss_pred ceEEEccCCCChH----------------HHHHHHHHcCCCCCCCCeEEcccccCCCCCh----------HHHHHHHHhc
Q 011417 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFAF 276 (486)
Q Consensus 223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~----------~e~l~~l~~l 276 (486)
+++..+|+||.+. .+..+++.........-++..||.+++++.+ ..++..|-.+
T Consensus 21 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~l 100 (527)
T 3qfk_A 21 AFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRM 100 (527)
T ss_dssp EEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred EEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHhc
Confidence 4888999999863 4444554432221222345579999987553 3455555444
Q ss_pred hhcCCCeEEEeccCCcc
Q 011417 277 KCMCPSAIYLSRGNHES 293 (486)
Q Consensus 277 k~~~p~~v~~lrGNHE~ 293 (486)
. ++ ++..||||.
T Consensus 101 g---~D--~~t~GNHef 112 (527)
T 3qfk_A 101 A---FD--FGTLGNHEF 112 (527)
T ss_dssp C---CC--EECCCGGGG
T ss_pred C---Cc--EEecccccc
Confidence 3 23 345799993
No 293
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=81.53 E-value=0.97 Score=46.82 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=39.0
Q ss_pred ceEEEccCCCCh-----------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcC
Q 011417 223 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC 280 (486)
Q Consensus 223 ~~~v~GDihG~~-----------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~ 280 (486)
+++.++|+||.+ ..+..+++.........-++..||++++.+.+ ..++..|-.+.
T Consensus 31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~lg--- 107 (552)
T 2z1a_A 31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRLR--- 107 (552)
T ss_dssp EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHTT---
T ss_pred EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhcC---
Confidence 488999999763 34455554432111122467789999976542 34444444443
Q ss_pred CCeEEEeccCCcc
Q 011417 281 PSAIYLSRGNHES 293 (486)
Q Consensus 281 p~~v~~lrGNHE~ 293 (486)
++ ++..||||.
T Consensus 108 ~d--~~~lGNHEf 118 (552)
T 2z1a_A 108 YR--AMALGNHEF 118 (552)
T ss_dssp CC--EEECCGGGG
T ss_pred CC--ccccccccc
Confidence 33 455799995
No 294
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=80.85 E-value=0.68 Score=47.53 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=38.5
Q ss_pred ceEEEccCCCChH----------HHHHHHHHcCCC----CCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcCCCe
Q 011417 223 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA 283 (486)
Q Consensus 223 ~~~v~GDihG~~~----------~l~~~l~~~~~~----~~~~~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~p~~ 283 (486)
+++.++|+||.+. .+..+++..... ....-++..||+++..+.+ ..++..|-.+. ++
T Consensus 10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d- 85 (516)
T 1hp1_A 10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD- 85 (516)
T ss_dssp EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence 4889999999753 233444332110 1123477789999765432 24455555553 33
Q ss_pred EEEeccCCcc
Q 011417 284 IYLSRGNHES 293 (486)
Q Consensus 284 v~~lrGNHE~ 293 (486)
++..||||.
T Consensus 86 -~~~~GNHEf 94 (516)
T 1hp1_A 86 -AMAIGNHEF 94 (516)
T ss_dssp -EEECCGGGG
T ss_pred -EEeeccccc
Confidence 456799996
No 295
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=80.32 E-value=1.1 Score=46.30 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=39.3
Q ss_pred ceEEEccCCCCh--------------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhch
Q 011417 223 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK 277 (486)
Q Consensus 223 ~~~v~GDihG~~--------------------~~l~~~l~~~~~~~~~~~~~~lGd~vdrG~~~-----~e~l~~l~~lk 277 (486)
+++.+.|+||.+ ..+..+++.........-++..||.++..+.+ ..++..|-.+.
T Consensus 27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg 106 (546)
T 4h2g_A 27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR 106 (546)
T ss_dssp EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence 488899999864 33444544432111123467789999977543 34455554443
Q ss_pred hcCCCeEEEeccCCcc
Q 011417 278 CMCPSAIYLSRGNHES 293 (486)
Q Consensus 278 ~~~p~~v~~lrGNHE~ 293 (486)
++ ++..||||.
T Consensus 107 ---~d--~~~~GNHEf 117 (546)
T 4h2g_A 107 ---YD--AMALGNHEF 117 (546)
T ss_dssp ---CS--EEECCGGGG
T ss_pred ---Cc--EEeccCccc
Confidence 23 355799995
No 296
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.13 E-value=8.1 Score=33.21 Aligned_cols=83 Identities=13% Similarity=-0.001 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
+...|..+|...+..|+++-|..+|+++ .+.. .+...|.-.|+.+.-....+.+.... ++ .....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~~---~L~~Ly~~tg~~e~L~kla~iA~~~g-~~----n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ-----HSFD---KLSFLYLVTGDVNKLSKMQNIAQTRE-DF----GSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCHH---HHHHHHHHHTCHHHHHHHHHHHHHTT-CH----HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCHH---HHHHHHHHhCCHHHHHHHHHHHHHCc-cH----HHHHHHH
Confidence 4567999999999999999999999986 3333 34455666777666555555554432 21 2223567
Q ss_pred HHcCCHHHHHHHHHHH
Q 011417 93 LAMGKFKEALKDFQQV 108 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~a 108 (486)
..+|+++++++.|.+.
T Consensus 100 l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHC
Confidence 7888888888887544
No 297
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=79.73 E-value=12 Score=41.42 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=72.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------C
Q 011417 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---------------------D 78 (486)
Q Consensus 20 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~ 78 (486)
+...+...+.++-|. +.+...|.++..-+.+|.+|...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 556677778877653 355678888888899999999999999999999987421 0
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 011417 79 PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPD 117 (486)
Q Consensus 79 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 117 (486)
+. ....|.....++...+-++-+++..+.|++.. ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 12356777899999999999999999999764 45554
No 298
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=77.00 E-value=2.2 Score=31.78 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 9 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
+-.+.+..+...|...-+.|+|++|+.+|.++++
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3345566677778788888888888888877765
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.80 E-value=6.2 Score=41.30 Aligned_cols=50 Identities=12% Similarity=-0.026 Sum_probs=26.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011417 60 KLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVK 109 (486)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 109 (486)
+.|+++.|..++++.-..........|-+|.++..+|+.++|...|+++.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44566666555554333222344555555666666666666666665554
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.49 E-value=3.9 Score=41.50 Aligned_cols=67 Identities=13% Similarity=0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (486)
+..+..+-..|...+.|+.|.....++. .|.+ ...+|.+|.++...++|.+|.+++..|++..|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 5667778889999999999999999985 3432 34578889999999999999999999999888664
No 301
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.36 E-value=4.2 Score=40.44 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
-..++..+|..|.+.|++++|.+.|.++...-. ...+.+.....++...+++..+...++++-..-
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999887533 235778888899999999999999999997663
No 302
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=72.53 E-value=2.7 Score=43.74 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=37.5
Q ss_pred ceEEEccCCCChHH---------------------HHHHHHHcCCCCCCCCeEEcccccCCCCC-----hHHHHHHHHhc
Q 011417 223 HFTVCGDVHGQFYD---------------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAF 276 (486)
Q Consensus 223 ~~~v~GDihG~~~~---------------------l~~~l~~~~~~~~~~~~~~lGd~vdrG~~-----~~e~l~~l~~l 276 (486)
+++...|+||.+.. +..+++.........-++..||.++..+. ...++..|-.+
T Consensus 14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l 93 (579)
T 3ztv_A 14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG 93 (579)
T ss_dssp EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence 48889999988543 33344332211112246677999986532 23445555444
Q ss_pred hhcCCCeEEEeccCCcc
Q 011417 277 KCMCPSAIYLSRGNHES 293 (486)
Q Consensus 277 k~~~p~~v~~lrGNHE~ 293 (486)
. ++ + +..||||.
T Consensus 94 g---~D-~-~tlGNHEf 105 (579)
T 3ztv_A 94 N---FH-Y-FTLGNHEF 105 (579)
T ss_dssp T---CS-E-EECCSGGG
T ss_pred C---cC-e-eecccccc
Confidence 3 33 2 44699994
No 303
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=71.31 E-value=5.5 Score=29.57 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=9.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011417 94 AMGKFKEALKDFQQVKK 110 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~ 110 (486)
..|+|++|+..|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55555555555555544
No 304
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=69.68 E-value=6.2 Score=29.26 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 65 GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
++|+...++|++.| ..|+|++|+..|..+++
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 35666666665543 45555555555555443
No 305
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=68.67 E-value=65 Score=31.44 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=72.0
Q ss_pred CCcCCCCCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 011417 2 PNMETENSSVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (486)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 77 (486)
|.........+-+.....+-..++..| +|..|+-.+-..-++.|..... .++..|.+|+..
T Consensus 245 Psi~~~tds~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa 309 (550)
T 3u84_A 245 PSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASA 309 (550)
T ss_dssp CBSSSSCBCHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHH
Confidence 444445555555555566666677665 5677777777777776653111 144444444432
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 011417 78 ----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECE 126 (486)
Q Consensus 78 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 126 (486)
.-.+...|..+|-.+++.+++.+|+.++..|-.. ..++.+++..+-.+-
T Consensus 310 ~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 310 KTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp HHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 3467888999999999999999999999888765 245666666555543
No 306
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.32 E-value=13 Score=27.88 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 41 (486)
....+-.+-.+|..+.+.|+|++||++.++|.
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445556666667777777777766665543
No 307
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.90 E-value=8.9 Score=28.36 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
+.+..+...|...-+.|+|++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455667777777777777777777777665
No 308
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.45 E-value=58 Score=31.82 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=71.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 011417 4 METENSSVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (486)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 77 (486)
........+-......+-..++..| +|..|+-.+-..-++.|.... ..+++.|++|+..
T Consensus 232 i~~~tDs~el~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~ 296 (489)
T 4gq4_A 232 IDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKT 296 (489)
T ss_dssp EETTEECHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHH
Confidence 3334444455555555666666554 567777777777777765421 1344555555543
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 011417 78 --DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECE 126 (486)
Q Consensus 78 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 126 (486)
.-.+...|..+|-.++..++|.+|++.+..|-.. ..++.+.+..+..+.
T Consensus 297 ~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 297 YYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp HSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred hcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 3456788999999999999999999999988765 356677776665554
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=66.46 E-value=79 Score=30.26 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 011417 5 ETENSSVSRAEELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---- 77 (486)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 77 (486)
.......+-+.....+-..++..| +|..|+-.+-..-++.|.... ..++..|.+|+..
T Consensus 226 ~~~tDs~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~l~L~~~AI~sa~~y 290 (472)
T 3re2_A 226 NHTTDSIQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGR---------------PPAEELFKEAITVAKRE 290 (472)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCC---------------CCHHHHHHHHHHHHHHH
Confidence 333444444444455555666554 456666666666666654211 1245555555543
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 011417 78 -DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECE 126 (486)
Q Consensus 78 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~ 126 (486)
.-.+...|..+|-.+++.+++.+|++++..|-.. ..+|.+.+..+-.+-
T Consensus 291 Y~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 291 YSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp STTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred hccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 3467788899999999999999999999888765 235566666555544
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.32 E-value=9.7 Score=38.64 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
...+..+..+-+.|...+.|++|.....++. .|.. ...++.+|.++.-+++|.+|.+++..|+...|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3556677888889999999999999999984 4532 5667889999999999999999999999987754
No 311
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=65.78 E-value=31 Score=28.34 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=57.0
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011417 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAF-AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKD 104 (486)
Q Consensus 26 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 104 (486)
..|+...-+.+|-+. +-.+. |..+|. ++..+|+-++--..+...+.-++-+++.+..+|.+|.++|+..+|.+.
T Consensus 73 ~C~NlKrVi~C~~~~---n~~se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN---NTLNE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp GCSCTHHHHHHHHHT---TCCCH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhcHHHHHHHHHHh---cchHH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 356777777777542 22322 333443 455778877777777776666777899999999999999999999999
Q ss_pred HHHHHHh
Q 011417 105 FQQVKKL 111 (486)
Q Consensus 105 ~~~al~~ 111 (486)
+.+|-+.
T Consensus 148 l~~AC~k 154 (172)
T 1wy6_A 148 LIEACKK 154 (172)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998875
No 312
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=64.50 E-value=12 Score=39.36 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 62 (486)
.....|...+..|+|..|.+..+.++..+|++..+...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666666555554
No 313
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=63.64 E-value=4.4 Score=39.01 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=24.0
Q ss_pred ceEEEccCCCChH----------------HHHHHHHHcCCCCCCCCeEEcccccCCCC
Q 011417 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGS 264 (486)
Q Consensus 223 ~~~v~GDihG~~~----------------~l~~~l~~~~~~~~~~~~~~lGd~vdrG~ 264 (486)
+++...|+||.+. -+..+++.........-++..||.+...+
T Consensus 13 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~ 70 (341)
T 3gve_A 13 SILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNP 70 (341)
T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSH
T ss_pred EEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcH
Confidence 3788899999863 23334433211111223556899997554
No 314
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.20 E-value=32 Score=35.84 Aligned_cols=123 Identities=10% Similarity=-0.083 Sum_probs=77.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVY----YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 92 (486)
....+...+...+.+.|...+.+.-+..+-+... +..+|..+...+...++...+.++.....++...-...+.++
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH
Confidence 4445666666778999999998876544333322 222333333444356788888887665444443334444544
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..|+++.|..+|++.-....+.+...+.++.++..+|+ .++|...++
T Consensus 297 -r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~--~~~a~~~~~ 343 (618)
T 1qsa_A 297 -GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR--EAEAKEILH 343 (618)
T ss_dssp -HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 56999999999987654334567788999998877766 345544443
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.12 E-value=15 Score=40.50 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------------CCC--CHHHHHHHHHHHHHccCHHHHHHHH
Q 011417 15 EELKALANEAFRAKKYSQAIDLYSQAIEL---------------------NSQ--NAVYYANRAFAHTKLEEYGSAIQDA 71 (486)
Q Consensus 15 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------------~p~--~~~~~~~lg~~~~~~g~~~~A~~~~ 71 (486)
-.-|.+|.++...|++++|..+|++|-.- .+. ....|.+....+.+.+-++-+++..
T Consensus 841 ~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 841 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34588999999999999999999987421 011 1347888899999999999999999
Q ss_pred HHHHHhC-CCCHH
Q 011417 72 SKAIEID-PRYPK 83 (486)
Q Consensus 72 ~~al~~~-p~~~~ 83 (486)
+.||+.- +++..
T Consensus 921 ~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 921 LLADASKETDDED 933 (950)
T ss_dssp HHHHHTCCSCCHH
T ss_pred HHHHhhcccCCcc
Confidence 9999753 44443
No 316
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=62.91 E-value=3.8 Score=41.85 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHH-CCCCceeeecccccccCceEecCCeE
Q 011417 399 KRFLQD-NSLGNLVVRSHEVKDEGYEIEHDGKL 430 (486)
Q Consensus 399 ~~~l~~-~~~~~~iir~H~~~~~G~~~~~~~~~ 430 (486)
.++.+. -++ ++||-||+-....+....++.+
T Consensus 217 ~~la~~~~gi-DlIlgGHtH~~~~~~~~~~~~~ 248 (509)
T 3ive_A 217 IQTASQVKGL-DILITGHAHVGTPEPIKVGNTL 248 (509)
T ss_dssp HHHHHHCSSC-CEEEEESSCCCCSSCEEETTEE
T ss_pred HHHHhcCCCC-cEEEeCCcCccCCCCeeeCCEE
Confidence 344444 378 9999999965332222335543
No 317
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=62.68 E-value=50 Score=36.60 Aligned_cols=82 Identities=12% Similarity=-0.071 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPDAAQKVK 123 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 123 (486)
..|..+-..|.+.|+.++|.+.|+...+. -.-+...|..+-..|.+.|+.++|.+.|++..+.. .-|...+..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34777888999999999999999765432 34567899999999999999999999999998753 12344455554
Q ss_pred HHHHHHh
Q 011417 124 ECEKAVK 130 (486)
Q Consensus 124 ~~~~~l~ 130 (486)
.++...+
T Consensus 208 ~glcK~G 214 (1134)
T 3spa_A 208 QCMGRQD 214 (1134)
T ss_dssp HHHHHHT
T ss_pred HHHHhCC
Confidence 5554444
No 318
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=62.26 E-value=13 Score=29.49 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
.+.+..+...|...-..|+|++|+.+|.+|++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45555666666666667777777776666554
No 319
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=61.94 E-value=3 Score=38.93 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=38.9
Q ss_pred CceEEEccCCCChH--HHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 222 KHFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 222 ~~~~v~GDihG~~~--~l~~~l~~~~~~~~~~~~~~lGd~vdrG-~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
.++..+||+||... .+...++........+.++..||-.-.| +.+..+...|..+. -.+.. .||||.-
T Consensus 5 m~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G----~Da~T-lGNHefD 75 (281)
T 1t71_A 5 IKFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAG----VNYIT-MGNHTWF 75 (281)
T ss_dssp CEEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHT----CCEEE-CCTTTTC
T ss_pred EEEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcC----CCEEE-EccCccc
Confidence 46999999998752 2222333221110123466667655444 45677777777775 24444 3999953
No 320
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=61.79 E-value=20 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=24.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 011417 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVY 50 (486)
Q Consensus 18 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 50 (486)
..+|..+...|++++|+.+|-+|+...|.-...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 467778888888888888888888887775443
No 321
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=61.44 E-value=14 Score=27.51 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
..+..+...|...-..|+|++|+.+|.++++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677777777788888888888887775
No 322
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=60.67 E-value=37 Score=27.92 Aligned_cols=116 Identities=7% Similarity=0.003 Sum_probs=73.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------------HHHHHHHHHH--HHccCHHHHHHHHHHHHHhC
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNA------------------VYYANRAFAH--TKLEEYGSAIQDASKAIEID 78 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------------------~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~ 78 (486)
-.|......|..++.++...+...-.|-.. ..+-.+|..+ ...|+...-+.+|-+. +
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n 88 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---N 88 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---T
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---c
Confidence 346667778999999999888877655321 1122233322 2345667777777443 2
Q ss_pred CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCc
Q 011417 79 PRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (486)
Q Consensus 79 p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~ 141 (486)
..+ -|..+| ..+..+|+-++--+.+...+...+-+++.+..++.+|..++.. .+|.++.
T Consensus 89 ~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~--r~a~eLl 148 (172)
T 1wy6_A 89 TLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE--RDATTLL 148 (172)
T ss_dssp CCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred chH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch--hhHHHHH
Confidence 222 234455 4556788888877777776676777899999999999888874 5555443
No 323
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=60.33 E-value=5.8 Score=38.10 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=23.9
Q ss_pred ceEEEccCCCChHH----------------HHHHHHHcCCCCCCCCeEEcccccCCCC
Q 011417 223 HFTVCGDVHGQFYD----------------LLNIFELNGLPSEENPYLFNGDFVDRGS 264 (486)
Q Consensus 223 ~~~v~GDihG~~~~----------------l~~~l~~~~~~~~~~~~~~lGd~vdrG~ 264 (486)
+++...|+||++.. +..+++...-.....-++..||.+..-+
T Consensus 10 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~n~llld~GD~~qGs~ 67 (339)
T 3jyf_A 10 RIMETTDLHSNMMDFDYYKDAATEKFGLVRTASLIEQARAEVKNSVLVDNGDVIQGSP 67 (339)
T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHTCSCEEEEECSCCSSSSH
T ss_pred EEEEEeeCCCCcccccccCCCccccCCHHHHHHHHHHHHhhCCCEEEEECCCCCCCch
Confidence 37888899997632 3334433221112223567899997443
No 324
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=60.05 E-value=4.2 Score=42.10 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=23.0
Q ss_pred CeEEcccccCCCCCh-----HHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 252 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 252 ~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
-++..||++++.+.+ ..++.+|-.+. + + + +. ||||.
T Consensus 126 Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg--~-d-~-~~-GNHEf 166 (562)
T 2wdc_A 126 LVLDGGDTWTNSGLSLLTRGEAVVRWQNLVG--V-D-H-MV-SHWEW 166 (562)
T ss_dssp EEEECSCCSSSSHHHHHHTTHHHHHHHHHHT--C-C-E-EC-CSGGG
T ss_pred EEEeCCCCCCcchhhhhhCCHHHHHHHHhhC--C-c-E-Ee-cchhc
Confidence 467789999976543 34555555554 2 2 3 46 99994
No 325
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.98 E-value=18 Score=26.77 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
..+.+..+...|...-..|+|++|+.+|.++++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677778888888888888888888888776
No 326
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.69 E-value=1.3e+02 Score=28.51 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQA 40 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 40 (486)
+--+.+..++..|.+.++|++|++.+-..
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 34456777888888899999988865544
No 327
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.41 E-value=32 Score=24.70 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (486)
.+|..+...|++++|..+|-+|+...|+=.+....
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i 56 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 56 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677777777777777777777777766554433
No 328
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.92 E-value=25 Score=26.53 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 11 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
.+.+..+...|...-..|+|++|+.+|.++++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677788888888888888888877765
No 329
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=56.88 E-value=26 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011417 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (486)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 48 (486)
..+.+.-.+.+|..++..++|.+|.+.+.+|++..|...
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 345567788899999999999999999999999888754
No 330
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.00 E-value=15 Score=27.78 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 011417 65 GSAIQDASKAIEI 77 (486)
Q Consensus 65 ~~A~~~~~~al~~ 77 (486)
+.|+..+.+|++.
T Consensus 13 ~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 13 TAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 331
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=55.36 E-value=6 Score=40.86 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=36.4
Q ss_pred ceEEEccCCCChH-------------HHHH---HHHHcC--CCCCCCCeEEcccccCCCCCh-------HHHHHHHHhch
Q 011417 223 HFTVCGDVHGQFY-------------DLLN---IFELNG--LPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFK 277 (486)
Q Consensus 223 ~~~v~GDihG~~~-------------~l~~---~l~~~~--~~~~~~~~~~lGd~vdrG~~~-------~e~l~~l~~lk 277 (486)
+++..+|+||.+. .+.+ .++... ..+ ..-++..||.++..+.+ ..++..|-.+.
T Consensus 17 ~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~-~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln~lg 95 (557)
T 3c9f_A 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQ-DLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQD 95 (557)
T ss_dssp EEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTC-EEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSC
T ss_pred EEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCC-CEEEEecCCCCCCccchhhcccCCHHHHHHHHhcC
Confidence 5889999999753 2333 333211 111 12367789999764422 23444444443
Q ss_pred hcCCCeEEEeccCCccc
Q 011417 278 CMCPSAIYLSRGNHESK 294 (486)
Q Consensus 278 ~~~p~~v~~lrGNHE~~ 294 (486)
.+ ++..||||.-
T Consensus 96 ---~D--a~tlGNHEfD 107 (557)
T 3c9f_A 96 ---YD--LLTIGNHELY 107 (557)
T ss_dssp ---CS--EECCCGGGSS
T ss_pred ---CC--EEeecchhcc
Confidence 23 3456999953
No 332
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=55.36 E-value=19 Score=27.03 Aligned_cols=29 Identities=28% Similarity=0.123 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 48 AVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
+..+..+|..+...|+|++|+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45567778888888888888888877653
No 333
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=54.71 E-value=10 Score=27.66 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
.-....+|+.|...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 445678899999999999999999998863
No 334
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.26 E-value=69 Score=31.71 Aligned_cols=92 Identities=8% Similarity=-0.058 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHH-
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEI----DPR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKK---LSPNDPDA- 118 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~- 118 (486)
.....||..|...|++.+|...+.....- ++. -.+.+.....+|...+++.+|...++++.. -.+..+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 44567899999999999999999887532 111 245778888999999999999999998742 23445443
Q ss_pred ---HHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 119 ---AQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 119 ---~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
+...+..+ ..+.+|.+|...|.
T Consensus 218 ~~~~~~~~~~~--~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 218 LEYYNLLVKIS--LHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHHHHHHH--HHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHH
Confidence 22233333 33444666555444
No 335
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.03 E-value=48 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCcHHHHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011417 8 NSSVSRAEEL----KALANEAFRAKKYSQAIDLYSQAIELNSQ 46 (486)
Q Consensus 8 ~~~~~~~~~~----~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 46 (486)
..+++..+.+ ..+|..+...|+++.|+.+|-+|+.+.|.
T Consensus 10 ~~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 10 LKDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3444444443 36788888888888888888888888777
No 336
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=50.74 E-value=18 Score=28.75 Aligned_cols=13 Identities=46% Similarity=0.279 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 011417 65 GSAIQDASKAIEI 77 (486)
Q Consensus 65 ~~A~~~~~~al~~ 77 (486)
+.|+..+.+|++.
T Consensus 16 ~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 16 QKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555433
No 337
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=50.63 E-value=21 Score=26.33 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.7
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011417 94 AMGKFKEALKDFQQVKK 110 (486)
Q Consensus 94 ~~g~~~~A~~~~~~al~ 110 (486)
..|+|++|+..|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555444
No 338
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=50.52 E-value=39 Score=25.15 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011417 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (486)
Q Consensus 12 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 43 (486)
..++.+...|..+++.++|.+|...++++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 44556667777777777777777777777654
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.08 E-value=1e+02 Score=25.79 Aligned_cols=28 Identities=4% Similarity=0.067 Sum_probs=16.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011417 17 LKALANEAFRAKKYSQAIDLYSQAIELN 44 (486)
Q Consensus 17 ~~~~g~~~~~~g~~~~A~~~~~~al~~~ 44 (486)
-+..|..++..|+|-+|-+.++.+-...
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 3455555666666666666666555444
No 340
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=49.82 E-value=92 Score=27.16 Aligned_cols=78 Identities=5% Similarity=-0.111 Sum_probs=57.2
Q ss_pred HHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011417 35 DLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALK 103 (486)
Q Consensus 35 ~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 103 (486)
..++++++. ||....+|...+..+ ..+...++...|...... .-..+..|-..|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567777764 233355566665544 233467888888887765 45667788888999999999999999
Q ss_pred HHHHHHHhCC
Q 011417 104 DFQQVKKLSP 113 (486)
Q Consensus 104 ~~~~al~~~p 113 (486)
.|+.+++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999999754
No 341
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=48.88 E-value=21 Score=26.58 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=9.8
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011417 93 LAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 93 ~~~g~~~~A~~~~~~al~ 110 (486)
...|+|++|+..|..+++
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 355555555555555554
No 342
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=48.35 E-value=21 Score=32.63 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=39.1
Q ss_pred ceEEEccCCCCh--HHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~lGd~vdrG-~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++..+||+=|.. ..+...+....... +.++..|+-.-.| +.+.+....|..+. -.+..+ ||||.-
T Consensus 2 ~ilf~GDv~g~~G~~~~~~~l~~lr~~~--d~vi~nge~~~~G~g~~~~~~~~l~~~G----~Da~Tl-GNHefD 69 (255)
T 1t70_A 2 RVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAG----AGCLTL-GNHAWH 69 (255)
T ss_dssp EEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHT----CSEEEC-CTTTTS
T ss_pred EEEEEeccCChHHHHHHHHHHHHHHhhC--CEEEECCCCccCCcCCCHHHHHHHHhCC----CCEEEe-cccccc
Confidence 588999997765 34444555443222 4455556444444 55667777777765 244443 999954
No 343
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.33 E-value=1.8e+02 Score=27.26 Aligned_cols=27 Identities=22% Similarity=0.037 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011417 80 RYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (486)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 106 (486)
.++..+..+|..|.+.+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 366777777777777777777777764
No 344
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=48.17 E-value=41 Score=33.50 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhCCCC------------H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C--------CH
Q 011417 29 KYSQAIDLYSQAIELNSQN------------A----VYYANRAFAHTKLEEYGSAIQDASKAIEIDP--R--------YP 82 (486)
Q Consensus 29 ~~~~A~~~~~~al~~~p~~------------~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~--------~~ 82 (486)
..++|...+.++....-.+ - ....++-.+|+++++..-+...++..-...+ . -.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4567777788887763211 1 1233455789999999888888865443322 1 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 011417 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL-SPND 115 (486)
Q Consensus 83 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 115 (486)
..+|.+|..+...++|.+|.+++..|++. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56888999999999999999999999998 7765
No 345
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=46.86 E-value=20 Score=32.73 Aligned_cols=65 Identities=12% Similarity=-0.047 Sum_probs=39.6
Q ss_pred ceEEEccCCCCh--HHHHHHHHHcCCCCCCCCeEEc-ccccCCCCChHHHHHHHHhchhcCCCeEEEeccCCccc
Q 011417 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFN-GDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (486)
Q Consensus 223 ~~~v~GDihG~~--~~l~~~l~~~~~~~~~~~~~~l-Gd~vdrG~~~~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (486)
++..+||+=|.- ..+...+....... +.+++. ||....-..+.+....|..+. -.+.. .||||.-
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~~~--d~vi~ngen~~~G~g~~~~~~~~l~~~G----~D~~T-~GNHefD 69 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRDRY--DLVIANGENAARGKGLDRRSYRLLREAG----VDLVS-LGNHAWD 69 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGGGC--SEEEEECTTTTTTSSCCHHHHHHHHHHT----CCEEE-CCTTTTS
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHhhC--CEEEEeCCCccCCCCcCHHHHHHHHhCC----CCEEE-eccEeeE
Confidence 588999996654 44555665543322 334444 466544345677777777775 24444 4999954
No 346
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=43.15 E-value=56 Score=28.49 Aligned_cols=33 Identities=18% Similarity=-0.048 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 49 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
...+.+|..++..++|.+|.+++..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 344555555555555555555555555554443
No 347
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=43.02 E-value=53 Score=34.47 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Q 011417 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (486)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~ 132 (486)
.......|...+..|+|.-|.+..+.++..+|+|.++...++.++.+++..
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 345677888889999999999999999999999999999999999988864
No 348
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=42.29 E-value=11 Score=38.58 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=21.1
Q ss_pred CeEEcccccCCCCCh-----HHHHHHHHhchhcCCCeEEEeccCCcc
Q 011417 252 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (486)
Q Consensus 252 ~~~~lGd~vdrG~~~-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (486)
-++..||.+...+.+ ..++.+|-.+. -.+ +..||||.
T Consensus 54 llldaGD~~qGs~~~~~~~g~~~i~~mN~lg----yDa-~~lGNHEF 95 (530)
T 4h1s_A 54 LLLDAGDQYQGTIWFTVYKGAEVAHFMNALR----YDA-MALGNHEF 95 (530)
T ss_dssp EEEECSCCSCSSHHHHHHTTHHHHHHHHHTT----CCE-EECCGGGG
T ss_pred EEEEeCCcccchHHHHHhCChHHHHHHhccC----CCE-EEEchhhh
Confidence 356679999865422 23444444443 123 34699995
No 349
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.71 E-value=1.7e+02 Score=24.47 Aligned_cols=61 Identities=7% Similarity=-0.104 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHH-H--HHHHHHcCCHHHHHHHHHHHHHh
Q 011417 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYR-R--GAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 51 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~-l--g~~~~~~g~~~~A~~~~~~al~~ 111 (486)
-+.-|..++..|+|-+|-+.++.+-...+.. ...+.. + |..+...|+..-|...+.+|+..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556778888899999999999998876554 223333 3 33556779999999999999874
No 350
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=35.39 E-value=53 Score=24.88 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011417 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (486)
Q Consensus 87 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 117 (486)
.+|..+...|+++.|+.+|-+|+...|+=.+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3456666666666666666666666555433
No 351
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=41.41 E-value=8 Score=40.84 Aligned_cols=48 Identities=19% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 011417 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE 63 (486)
Q Consensus 16 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 63 (486)
.....|...+..|+|..|.+..+.++..+|++..+...++.+|.++|.
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 344555555566666666666666666666666666666666555554
No 352
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=35.14 E-value=98 Score=29.65 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKK--YSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
+.++-++|..--..-- ...++..|.+|+.. .......|..+|..+++.+++.+|+..+-.|-.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 4556666655443322 23388889998875 345567788899999999999999999988754
No 353
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.88 E-value=41 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 52 ANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 52 ~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
..+|.-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4456666667777777777766654
No 354
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.45 E-value=93 Score=30.94 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNS----------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY 81 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 81 (486)
.+-..|++.++...+...++..-...+ ..+..++.+|..+...++|.+|.+++..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 344678899999888887765433322 12577889999999999999999999999998 6654
No 355
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.64 E-value=66 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011417 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (486)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 110 (486)
+++|..+..+||++| ..|+-++|+++|++.+.
T Consensus 19 h~~AF~~Is~AL~~D---------------E~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD---------------ELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
No 356
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=27.91 E-value=1.3e+02 Score=29.73 Aligned_cols=31 Identities=16% Similarity=-0.036 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
...++..+|.+|...|+|++|.+..++++..
T Consensus 189 k~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3567888999999999999999999999964
No 357
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.71 E-value=3.6e+02 Score=25.88 Aligned_cols=89 Identities=7% Similarity=-0.088 Sum_probs=62.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------C
Q 011417 23 EAFRAKKYSQAIDLYSQAIELN-----------------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------D 78 (486)
Q Consensus 23 ~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~ 78 (486)
+.-...+.++|++.+++..+.- -....+...++..|...++.++|....+++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678999999988764321 011345667788899999999999999888643 1
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 79 PR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 79 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
|. ....|...+..|...+++.++....-.++..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 21 2344555677888999999988887777753
No 358
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=26.98 E-value=3.8e+02 Score=26.22 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 011417 14 AEELKALANEAFRAKK--YSQAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPR 80 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~ 80 (486)
+.++-++|..--.... -..+++.|.+||.. .......|..+|-.+++.++|.+|++.+-.|-.. ..+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 4566666665543222 23477888888874 3445677888999999999999999999887543 345
Q ss_pred CHHHHHHHH
Q 011417 81 YPKGYYRRG 89 (486)
Q Consensus 81 ~~~~~~~lg 89 (486)
+.+.|-.+-
T Consensus 342 DeEiYke~~ 350 (489)
T 4gq4_A 342 DEEIYKEFF 350 (489)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 556655443
No 359
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans}
Probab=26.50 E-value=46 Score=29.72 Aligned_cols=23 Identities=4% Similarity=0.172 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCCCceeeecccc
Q 011417 395 ADVTKRFLQDNSLGNLVVRSHEV 417 (486)
Q Consensus 395 ~~~~~~~l~~~~~~~~iir~H~~ 417 (486)
.+.+.++++..+..+.++.||..
T Consensus 97 ~~~l~~~l~~~~~~~~~lvGhS~ 119 (292)
T 3l80_A 97 VNAILMIFEHFKFQSYLLCVHSI 119 (292)
T ss_dssp HHHHHHHHHHSCCSEEEEEEETT
T ss_pred HHHHHHHHHHhCCCCeEEEEEch
Confidence 46788999999986788999984
No 360
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.22 E-value=1.4e+02 Score=29.84 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
...++-.+|.+|+..++|++|....++++...
T Consensus 202 k~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 202 NEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35678889999999999999999999999763
No 361
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.15 E-value=1.6e+02 Score=28.76 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHccCHH--HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 14 AEELKALANEAFRAKKYS--QAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (486)
Q Consensus 14 ~~~~~~~g~~~~~~g~~~--~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 76 (486)
+.++-++|..--..--.. .++..|.+|+.. .......|..+|-.+++.+++.+|+..+-.|-.
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 445566665544322222 478888888875 345567788899999999999999999877754
No 362
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.84 E-value=1.4e+02 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 111 (486)
...++..+|.+|...|+|++|.+..++++..
T Consensus 195 k~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 195 RWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3567888999999999999999999999874
No 363
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=25.28 E-value=94 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHCCCCc--eeeeccccc
Q 011417 394 GADVTKRFLQDNSLGN--LVVRSHEVK 418 (486)
Q Consensus 394 g~~~~~~~l~~~~~~~--~iir~H~~~ 418 (486)
..+.+..+|+++++ + +++-||.-.
T Consensus 358 ~R~~Ll~~l~~~~v-~n~vvLsGDvH~ 383 (527)
T 2yeq_A 358 QRERVINFIKSKNL-NNVVVLTGDVHA 383 (527)
T ss_dssp HHHHHHHHHHHTTC-CCEEEEECSSSS
T ss_pred HHHHHHHHHHHhCC-CCEEEEEcchHH
Confidence 35678888999998 6 888888754
No 364
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.56 E-value=1.9e+02 Score=21.62 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=15.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011417 19 ALANEAFRAKKYSQAIDLYSQAIELNS 45 (486)
Q Consensus 19 ~~g~~~~~~g~~~~A~~~~~~al~~~p 45 (486)
..|..++..|+|-+|-+.++.+-...|
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 445556666666666666666555553
No 365
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.94 E-value=3.6e+02 Score=23.78 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 65 GSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 65 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
+++...|...... .-..+..|-..|..+...|++.+|.+.|+.+++..-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4666777776654 3456777888899999999999999999999997644
No 366
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.67 E-value=4.5e+02 Score=24.44 Aligned_cols=27 Identities=15% Similarity=-0.145 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 114 ~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
.+++.+..+|..+.. .+++.+|...+-
T Consensus 132 Gdp~LH~~~a~~~~~--e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLE--GDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhh--cCCHHHHHHHHH
Confidence 578889999988854 444677766555
No 367
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.30 E-value=4.7e+02 Score=24.60 Aligned_cols=123 Identities=11% Similarity=-0.072 Sum_probs=57.2
Q ss_pred HHHHHHHHHccCH---HHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHH
Q 011417 18 KALANEAFRAKKY---SQAIDLYSQAIELN---SQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DPRYPK 83 (486)
Q Consensus 18 ~~~g~~~~~~g~~---~~A~~~~~~al~~~---p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~ 83 (486)
..+-..-...|+| =+|.+.|+...... .+ -.++.+.=|..+.+.|++..|.+...-.++. -|-+..
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~ 95 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGA 95 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 3344455667777 66766666554321 11 1233444455556666666555544333321 122334
Q ss_pred HHHHHHHHHHHcCCH--------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHhhcCcc
Q 011417 84 GYYRRGAAYLAMGKF--------KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (486)
Q Consensus 84 ~~~~lg~~~~~~g~~--------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~l~~~~~~~A~~~~~ 142 (486)
..-++..++.....- .+|+++-.+.=...-.+++.+..+|..+..- +++.+|...+-
T Consensus 96 ~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e--~~~~~Ae~H~i 160 (336)
T 3lpz_A 96 SRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE--GEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT--TCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHH
Confidence 444555555544431 2233332221111224566777777766333 33555554443
No 368
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=22.70 E-value=1.5e+02 Score=29.39 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011417 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (486)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 112 (486)
...++..+|.+|...|+|++|.+..++++...
T Consensus 201 k~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 201 YWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 34678889999999999999999999999764
No 369
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.60 E-value=3.8e+02 Score=23.22 Aligned_cols=73 Identities=7% Similarity=-0.003 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011417 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE--LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (486)
Q Consensus 8 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 81 (486)
.+|+.-...|...+..+ ..+...++...|.-... +.-..+..|...|..+...|++.+|.+.|+.+++....-
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45666667777777665 23446677777776655 456789999999999999999999999999999976543
No 370
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.40 E-value=3.4e+02 Score=22.28 Aligned_cols=50 Identities=12% Similarity=-0.053 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011417 65 GSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (486)
Q Consensus 65 ~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 114 (486)
+++...|...... .-..+..|-.-|..+...|++++|.+.|+.+++....
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3477777776654 4556777888899999999999999999999987543
No 371
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.41 E-value=1.3e+02 Score=23.09 Aligned_cols=30 Identities=20% Similarity=0.038 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 42 (486)
+++..+..|....+.|+|++|.+.+++|-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456667777777788888888887777643
No 372
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.07 E-value=1.4e+02 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011417 13 RAEELKALANEAFRAKKYSQAIDLYSQAI 41 (486)
Q Consensus 13 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al 41 (486)
+++..+..|....+.|+|++|.+.+++|-
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45666777777778888888888777764
Done!