Query 011418
Match_columns 486
No_of_seqs 179 out of 356
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cy7_A Cysteine protease APG4B 100.0 4E-113 1E-117 887.8 29.0 328 102-458 18-372 (396)
2 2p82_A Cysteine protease ATG4A 100.0 1E-112 4E-117 874.5 28.9 316 103-448 15-355 (355)
3 3oqc_A UFSP2, UFM1-specific pr 98.0 4.3E-05 1.5E-09 80.4 12.4 46 328-374 394-445 (481)
4 2z84_A UFSP1, UFM1-specific pr 97.8 7.1E-05 2.4E-09 72.2 10.4 28 345-372 143-175 (218)
5 1v61_A RAC/CDC42 guanine nucle 18.9 1.3E+02 0.0043 26.4 4.7 25 407-431 103-127 (132)
6 2fu4_A Ferric uptake regulatio 14.9 2.7E+02 0.0094 21.0 5.3 49 204-256 17-65 (83)
7 1nxi_A Conserved hypothetical 14.0 36 0.0012 29.9 -0.2 9 169-177 117-125 (132)
8 3u5c_N S27A, YS15, 40S ribosom 13.5 1.4E+02 0.0047 27.2 3.5 27 222-248 121-148 (151)
9 2xzm_O RPS13E; ribosome, trans 13.4 1.4E+02 0.0048 27.2 3.5 27 222-248 123-150 (153)
10 2p82_A Cysteine protease ATG4A 12.1 1E+02 0.0036 31.4 2.6 35 56-94 49-83 (355)
No 1
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A
Probab=100.00 E-value=4e-113 Score=887.81 Aligned_cols=328 Identities=34% Similarity=0.669 Sum_probs=282.9
Q ss_pred CCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHH
Q 011418 102 SRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLV 181 (486)
Q Consensus 102 ~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLL 181 (486)
+..++|.+++||||||++|+..++ .++|++||+||||||||+||+||+++++|||+|||||||||||||
T Consensus 18 ~~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlL 86 (396)
T 2cy7_A 18 EFEDFPETSEPVWILGRKYSIFTE-----------KDEILSDVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIF 86 (396)
T ss_dssp CCCCCCCCSSCEEETTEEECTTTC-----------HHHHHHHHHHSBCCCEEESCCCTTTTSCSBCTTTCHHHHHHHHHH
T ss_pred ccccCCCCCCcEEEeCcEecCCcC-----------HHHHHHHhhhcEEEEccCCCcccCCCCCCCCCCccceeeccHHHH
Confidence 567899999999999999998654 579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhc
Q 011418 182 AQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAET 261 (486)
Q Consensus 182 AqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~ 261 (486)
||||++|||||+|||+..+..+++|.+||+||+|+|+|||||||||++|+++||+||+||||+++|++|++|++.
T Consensus 87 AqaL~~~~LGrdwr~~~~~~~~~~~~~Il~~F~D~~~apFSIH~iv~~G~~~gk~~GeWfGPs~va~~lk~L~~~----- 161 (396)
T 2cy7_A 87 AQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFIDRKDSYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVF----- 161 (396)
T ss_dssp HHHHHHHHTCTTCCCCTTSCCCHHHHHHHHTTSSSTTSTTCHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHhcccccccccccCcHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCcccccCHHHHHHHHHHHhhc-----
Confidence 999999999999999877666778999999999999999999999999999999999999999999999999752
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCCCceEeccccccccccc--------------------c------CCCCCCccEEEEE
Q 011418 262 GLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVF--------------------S------KGQADWTPILLLV 315 (486)
Q Consensus 262 ~~~~~~~~l~vyv~s~~~dge~g~~~vv~~dd~~~~c~~~--------------------~------~~~~~w~plLlLI 315 (486)
..+..++|||++++ +|+++|+.+.|... . .....|+|+||||
T Consensus 162 ---~~~~~l~v~va~D~---------~v~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~plLlli 229 (396)
T 2cy7_A 162 ---DTWSSLAVHIAMDN---------TVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFPAGAEVTNRPSPWRPLVLLI 229 (396)
T ss_dssp ---CTTTCCEEEECCTT---------EEEHHHHHHHHBSSCCC---------------------------CCBCCEEEEE
T ss_pred ---ccccCceEEEecCC---------ceeHHHHHHHhhcccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 23346899998753 67778877665421 0 0124699999999
Q ss_pred eeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCc-c
Q 011418 316 PLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-I 394 (486)
Q Consensus 316 PlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~~~~~~~~~~SyHc~~-~ 394 (486)
|+|||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++...... .+.+||||.. +
T Consensus 230 plRLGld~iNp~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~liYLDPH~~Q~a~~~~~~~~-~~~~s~hc~~~~ 308 (396)
T 2cy7_A 230 PLRLGLTDINEAYVETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPTDGCF-IPDESFHCQHPP 308 (396)
T ss_dssp EEECCSSSCCGGGHHHHHHHTSSTTEEEEEECSTTCCEEEEEEETTEEEEECCCSEEECCC---CCC-CCCGGGBCCSCC
T ss_pred EEeecCCcCCHHHHHHHHHHhCCcccceEecCccCceEEEEEEeCCEEEeeCCCccccccccccccc-CCCcceeecCcc
Confidence 9999999999999999999999999999999999999999999999999999999999998654332 2457999987 5
Q ss_pred ccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCcCCCCC
Q 011418 395 RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETG 458 (486)
Q Consensus 395 rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~~PLF~v~~~~p~~~~~~d~~~~~~ 458 (486)
++|++++|||||+|||||+|++||++||++++++....+++|||+|++++|++..++|++....
T Consensus 309 ~~m~~~~mDPS~~lGFyc~~~~Df~d~~~~~~~~~~~~~~~plF~v~~~~p~~~~~~~~~~~~~ 372 (396)
T 2cy7_A 309 CRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLACPDVLNLSL 372 (396)
T ss_dssp EEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHHHC----CCSEEESCCC------CCCCCCC
T ss_pred cccchhhcCCceEEEEEECCHHHHHHHHHHHHHHhccCCCCceEEeeccCCCcCCCCccccCCC
Confidence 8999999999999999999999999999999999877778999999999999988888766544
No 2
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=100.00 E-value=1.1e-112 Score=874.46 Aligned_cols=316 Identities=34% Similarity=0.685 Sum_probs=282.9
Q ss_pred CCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHHH
Q 011418 103 RTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVA 182 (486)
Q Consensus 103 ~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLA 182 (486)
+.+++++++||||||++|+..++ .++|++||.||||||||+||+||+++++|||+||||||||||||||
T Consensus 15 ~~~~~~~~~pv~iLG~~y~~~~~-----------~~~fl~d~~SriWfTYR~~F~~I~~s~~TSD~GWGCMlRsgQMlLA 83 (355)
T 2p82_A 15 YFQGPDTDELVWILGKQHLLKTE-----------KSKLLSDISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLA 83 (355)
T ss_dssp -------CCEEEETTEEEETTTT-----------HHHHHHHHHTSBCCCEEESSCCTTTTSCSCCTTTCHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEecceecCCcC-----------HHHHHHHhhhcEEEEecCCCccCCCCCccCCCccceeeehhHHHHH
Confidence 45677899999999999998754 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhcc
Q 011418 183 QALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETG 262 (486)
Q Consensus 183 qAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~ 262 (486)
|||++|||||+|||......+++|.+||+||+|+|+|||||||||++|.++||+||+||||+++|++|++|++.
T Consensus 84 qaL~~~~LGr~wr~~~~~~~~~~~~~Il~~F~D~~~apfSIH~iv~~g~~~gk~~GeWfGPs~va~~lk~L~~~------ 157 (355)
T 2p82_A 84 QALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALF------ 157 (355)
T ss_dssp HHHHHHHTCTTCCTTSCSSCCHHHHHHHHTTSSSTTSTTSHHHHHHHHHTTTCCTTCCCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHhcCccccccccccccHHHHHHHHhcCCCCCCCccHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhc------
Confidence 99999999999999877667789999999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCCCceEeccccccccccccC------------------------CCCCCccEEEEEeee
Q 011418 263 LGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSK------------------------GQADWTPILLLVPLV 318 (486)
Q Consensus 263 ~~~~~~~l~vyv~s~~~dge~g~~~vv~~dd~~~~c~~~~~------------------------~~~~w~plLlLIPlR 318 (486)
.+..+++|||++++ +++++|+.+.|..... ....|+|||||||+|
T Consensus 158 --~~~~~l~v~va~D~---------~v~~~di~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plLlliplR 226 (355)
T 2p82_A 158 --DEWNSLAVYVSMDN---------TVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSAWKPLLLIVPLR 226 (355)
T ss_dssp --CTTTCCEEEECBTT---------EEEHHHHHHHHEECCSCC----------------------CCCEECCEEEEEEEE
T ss_pred --ccccCceEEEecCC---------cEeHHHHHHHhhcccccccccccccccccccccccccccccccCCceEEEEEEee
Confidence 23457999998753 7888998887753211 012699999999999
Q ss_pred ecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccCCCCCCCCCCccccCc-cccc
Q 011418 319 LGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEADTSTYHSDV-IRHI 397 (486)
Q Consensus 319 LGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~~~~~~~~~~SyHc~~-~rkm 397 (486)
||+|+|||+|+++||++|++|||+|||||||++|+||||+|+|+|||||||+||+|++..+.+. .+.+||||.. +++|
T Consensus 227 LGld~in~~Y~~~Lk~~l~~pqsvGIiGGkP~~s~YfvG~q~d~l~YLDPH~~Q~a~~~~~~~~-~~~~sfhc~~~~~~m 305 (355)
T 2p82_A 227 LGINQINPVYVDAFKECFKMPQSLGALGGKPNNAYYFIGFLGDELIFLDPHTTQTFVDTEENGT-VNDQTFHCLQSPQRM 305 (355)
T ss_dssp CCSSSCCGGGHHHHHHHHHSTTEEEEEEEETTEEEEEEEEETTEEEEECCCSEEECCCBCTTSC-BCCGGGBCCSSCEEE
T ss_pred cCCCcCCHHHHHHHHHHhCccccceEecCCCCceEEEEEEcCCEEEEeCCCCCcccccccccCc-CCCCceeeCCCcCcC
Confidence 9999999999999999999999999999999999999999999999999999999998765433 2578999999 9999
Q ss_pred cccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Q 011418 398 HLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNGAPLFTVTQTHKKPV 448 (486)
Q Consensus 398 ~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~~PLF~v~~~~p~~~ 448 (486)
++++|||||+|||||+|++||++||+++++++.+ .++|||||++++|.++
T Consensus 306 ~~~~lDPS~~lGF~c~~~~df~d~~~~i~~~~~~-~~~plF~v~~~~p~~~ 355 (355)
T 2p82_A 306 NILNLDPSVALGFFCKEEKDFDNWCSLVQKEILK-ENLRMFELVQKHPSHW 355 (355)
T ss_dssp EGGGSCSEEEEEEEESSHHHHHHHHHHHHHHTTT-SSSCSSEEESSCCCCC
T ss_pred chhhcCcceEEEEEECCHHHHHHHHHHHHHHhcc-CCCCcEEEeccCCCCC
Confidence 9999999999999999999999999999998877 8899999999999763
No 3
>3oqc_A UFSP2, UFM1-specific protease 2; DPH motif Cys protease, hydrolase; 2.60A {Mus musculus}
Probab=97.98 E-value=4.3e-05 Score=80.40 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=32.7
Q ss_pred hHHHHHHHhCCCceeEEecCCCCceEEEEEEecC------ceEeeCCCCcccc
Q 011418 328 YIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEE------SAIYLDPHDVQPV 374 (486)
Q Consensus 328 Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d------~LiYLDPH~vQ~a 374 (486)
..+.|.+-|+-...-=++|| ..+|+=++|+.-+ +|+.|||||+-+.
T Consensus 394 l~~~L~~hF~~~GtPImiGG-~~~S~TIlGVe~~~~tG~~~lLIlDPHytg~~ 445 (481)
T 3oqc_A 394 QGRELANHFQNVGTPVMVGG-GVLAHTILGVAWNETTGQIKFLILDPHYTGAE 445 (481)
T ss_dssp GHHHHHHHHTTTCCCEEEEE-TTEEEEEEEEEECTTTCCEEEEEECTTCCSCS
T ss_pred HHHHHHHHHhccCCCEEecC-CCCCceEEEEEEecCCCeEEEEEECCCCCChH
Confidence 34567777765444456666 6799999999732 5789999997644
No 4
>2z84_A UFSP1, UFM1-specific protease 1; alpha/beta, papain like fold, hydrolase, thiol protease, UBL conjugation pathway; 1.70A {Mus musculus}
Probab=97.84 E-value=7.1e-05 Score=72.21 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.1
Q ss_pred ecCCCCceEEEEEEec-----CceEeeCCCCcc
Q 011418 345 VGGKPGASTYIVGVQE-----ESAIYLDPHDVQ 372 (486)
Q Consensus 345 iGGkP~~SlYFvG~q~-----d~LiYLDPH~vQ 372 (486)
=||...||.=+||+.. -+|+.||||++-
T Consensus 143 gG~~~ghS~tIvGve~~~~g~~~lLIlDPhy~~ 175 (218)
T 2z84_A 143 GGDADAQSKALLGICEGPGSEVYVLILDPHYWG 175 (218)
T ss_dssp CCTTTSCCEEEEEEEECTTCCEEEEEECCCCCS
T ss_pred CCCcccccceEEeEEecCCCcEEEEEECCCcCC
Confidence 3577899999999962 269999999987
No 5
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=18.88 E-value=1.3e+02 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=21.8
Q ss_pred EEEEEeCChhhHHHHHHHHHHHHhh
Q 011418 407 AIGFYCRDKDDFDDFCARASKLAEE 431 (486)
Q Consensus 407 alGFycr~~~Df~df~~~i~~l~~~ 431 (486)
.+-|+|++.+|++.|...+.++++.
T Consensus 103 ~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 103 RIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999887653
No 6
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=14.94 E-value=2.7e+02 Score=20.95 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHHHHhhhcCCCCCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHH
Q 011418 204 REYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 256 (486)
Q Consensus 204 ~e~~~IL~lF~D~~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~ 256 (486)
+....||.++...+..|+|+..|++.-...+.. .+++|+-+.|+.|.+.
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~----is~~TVyR~L~~L~~~ 65 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEE----IGLATVYRVLNQFDDA 65 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCC----CCHhhHHHHHHHHHHC
Confidence 345689999987643589999999877654432 4789999999999875
No 7
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=14.01 E-value=36 Score=29.86 Aligned_cols=9 Identities=33% Similarity=0.940 Sum_probs=7.0
Q ss_pred Cccccccch
Q 011418 169 GWGCMLRSS 177 (486)
Q Consensus 169 GWGCMLRsg 177 (486)
|||||+--.
T Consensus 117 GWGt~~~~~ 125 (132)
T 1nxi_A 117 GWGTYYEGL 125 (132)
T ss_dssp EEEECCCCC
T ss_pred CcceEEEcc
Confidence 999997543
No 8
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=13.53 E-value=1.4e+02 Score=27.15 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHcCCCCccc-cChhHHHH
Q 011418 222 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 248 (486)
Q Consensus 222 SIH~iv~~G~~~gk~pGeW-fGPs~~a~ 248 (486)
-||++++.-+.-|+-|.+| |-|.++..
T Consensus 121 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 148 (151)
T 3u5c_N 121 RIHRLARYYRTVAVLPPNWKYESATASA 148 (151)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999989999999999 88888764
No 9
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=13.42 E-value=1.4e+02 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHcCCCCccc-cChhHHHH
Q 011418 222 SIHNLLQAGKAYGLAAGSW-VGPYAMCR 248 (486)
Q Consensus 222 SIH~iv~~G~~~gk~pGeW-fGPs~~a~ 248 (486)
-||++++.-+.-|+-|.+| |-|.+++.
T Consensus 123 kI~RL~rYYk~~~~LP~~WkY~~~tA~~ 150 (153)
T 2xzm_O 123 RIHRLSRYYKLNQKLPPKWKYNAQTASA 150 (153)
T ss_dssp HHHHHHHHHHHTTSSCTTCCCSSHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCCcCCHHHHHH
Confidence 4899999999999999999 88888764
No 10
>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22
Probab=12.12 E-value=1e+02 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=23.3
Q ss_pred cccccccccccccccccccCCChhHHHHHHhhcchHHHH
Q 011418 56 VFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRI 94 (486)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 94 (486)
+.=|||.-=+.-.....+++.||+|++|. |.|.-.
T Consensus 49 iWfTYR~~F~~I~~s~~TSD~GWGCMlRs----gQMlLA 83 (355)
T 2p82_A 49 LWFTYRRKFSPIGGTGPSSDAGWGCMLRC----GQMMLA 83 (355)
T ss_dssp BCCCEEESSCCTTTTSCSCCTTTCHHHHH----HHHHHH
T ss_pred EEEEecCCCccCCCCCccCCCccceeeeh----hHHHHH
Confidence 34466654443334557899999999998 666544
Done!