Query 011420
Match_columns 486
No_of_seqs 149 out of 379
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 01:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.0 4.7E-10 1E-14 83.0 5.4 48 356-406 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.7 2.9E-08 6.2E-13 69.6 5.6 48 356-407 1-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 9.2E-08 2E-12 66.3 5.4 45 358-406 1-45 (45)
4 PLN03212 Transcription repress 98.5 2.5E-07 5.3E-12 91.3 6.9 65 343-410 12-76 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.3 8E-07 1.7E-11 67.7 4.7 44 359-407 1-44 (60)
6 PLN03091 hypothetical protein; 98.3 1.7E-06 3.7E-11 91.1 7.8 54 353-409 11-64 (459)
7 PLN03212 Transcription repress 97.8 2.8E-05 6.1E-10 77.0 5.6 50 355-409 77-126 (249)
8 KOG0048 Transcription factor, 97.8 5.8E-05 1.3E-09 72.7 7.1 53 356-411 9-61 (238)
9 PLN03091 hypothetical protein; 97.7 6.7E-05 1.5E-09 79.4 5.9 48 356-408 67-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.6 9E-05 1.9E-09 58.5 5.2 46 354-401 1-49 (57)
11 KOG0457 Histone acetyltransfer 97.2 0.00064 1.4E-08 71.9 6.9 47 358-408 74-120 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.2 0.00037 8.1E-09 56.1 3.5 54 356-409 1-67 (90)
13 KOG0048 Transcription factor, 96.7 0.0027 5.9E-08 61.3 5.6 50 355-409 61-110 (238)
14 PF13325 MCRS_N: N-terminal re 96.4 0.0037 8E-08 60.5 4.4 62 354-415 71-135 (199)
15 KOG0051 RNA polymerase I termi 96.2 0.0074 1.6E-07 66.4 6.0 51 355-411 383-433 (607)
16 PF13873 Myb_DNA-bind_5: Myb/S 96.1 0.016 3.5E-07 46.3 5.8 53 357-409 3-72 (78)
17 KOG0049 Transcription factor, 95.9 0.0095 2.1E-07 66.3 5.1 51 355-409 359-409 (939)
18 PF09111 SLIDE: SLIDE; InterP 95.8 0.0098 2.1E-07 53.2 3.8 55 355-409 48-113 (118)
19 KOG0049 Transcription factor, 95.5 0.012 2.5E-07 65.7 3.9 53 352-408 408-460 (939)
20 COG5114 Histone acetyltransfer 95.0 0.1 2.2E-06 54.6 8.6 46 358-407 65-110 (432)
21 PLN03142 Probable chromatin-re 92.7 0.17 3.8E-06 58.9 5.8 55 355-409 925-987 (1033)
22 KOG4282 Transcription factor G 91.3 0.38 8.3E-06 48.5 5.7 54 356-409 54-116 (345)
23 KOG1279 Chromatin remodeling f 90.1 0.37 8.1E-06 52.5 4.7 49 353-406 250-298 (506)
24 COG5147 REB1 Myb superfamily p 89.5 0.19 4.1E-06 54.8 1.9 50 354-409 289-338 (512)
25 COG5147 REB1 Myb superfamily p 87.7 0.78 1.7E-05 50.3 5.0 81 353-450 17-98 (512)
26 COG5259 RSC8 RSC chromatin rem 86.8 0.74 1.6E-05 50.2 4.2 46 356-406 279-324 (531)
27 KOG0051 RNA polymerase I termi 86.1 1.7 3.7E-05 48.6 6.6 57 354-414 434-516 (607)
28 KOG0050 mRNA splicing protein 83.3 0.94 2E-05 50.0 3.1 47 357-407 8-54 (617)
29 PF12776 Myb_DNA-bind_3: Myb/S 82.8 2 4.4E-05 35.0 4.2 51 358-408 1-64 (96)
30 KOG2656 DNA methyltransferase 81.9 0.85 1.8E-05 48.8 2.1 49 357-406 131-181 (445)
31 PF08074 CHDCT2: CHDCT2 (NUC03 77.2 1.7 3.8E-05 41.8 2.4 65 355-419 2-80 (173)
32 PF08914 Myb_DNA-bind_2: Rap1 76.4 5.3 0.00011 32.6 4.6 50 356-408 2-59 (65)
33 PF04504 DUF573: Protein of un 75.6 5.7 0.00012 34.4 4.9 54 355-408 3-64 (98)
34 COG5118 BDP1 Transcription ini 70.7 6.9 0.00015 42.3 5.1 89 349-443 359-450 (507)
35 KOG0384 Chromodomain-helicase 62.3 4.1 9E-05 49.0 1.7 54 355-408 1132-1193(1373)
36 cd01187 INT_SG4 INT_SG4, DNA b 45.3 50 0.0011 31.3 5.7 83 355-440 98-187 (299)
37 KOG0050 mRNA splicing protein 36.9 39 0.00085 38.0 4.0 46 356-407 59-104 (617)
38 PF09420 Nop16: Ribosome bioge 34.0 88 0.0019 29.1 5.3 52 354-406 112-163 (164)
39 PF00984 UDPG_MGDP_dh: UDP-glu 32.0 13 0.00027 32.1 -0.5 45 114-165 19-63 (96)
40 smart00595 MADF subfamily of S 29.6 53 0.0011 26.5 2.8 25 378-407 29-53 (89)
41 PF07128 DUF1380: Protein of u 28.0 57 0.0012 30.8 3.0 20 426-445 87-106 (139)
42 KOG3554 Histone deacetylase co 25.8 43 0.00093 37.4 2.0 55 353-408 282-336 (693)
43 PHA02095 hypothetical protein 23.6 36 0.00078 29.5 0.8 24 49-75 39-62 (84)
44 cd02135 Arsenite_oxidase Nitro 22.6 98 0.0021 26.9 3.3 35 421-455 11-45 (160)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.02 E-value=4.7e-10 Score=82.99 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
+.+||++|++.|+++|.+||.++|..|...++ .+||..+|+.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999988999999886 5999999999999974
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.72 E-value=2.9e-08 Score=69.57 Aligned_cols=48 Identities=33% Similarity=0.637 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+.+||++|++.|+.+|.+||.++|..|...++ +||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 35799999999999999999779999998764 9999999999999874
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.60 E-value=9.2e-08 Score=66.30 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 358 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
+||.+|++.|+.++.+||.++|..|..... +||..+++++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999889999998764 699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.48 E-value=2.5e-07 Score=91.31 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=51.7
Q ss_pred ccCCCcccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 343 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 343 ~Kr~~~~gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
+|++.+--+.--++.+||+||++.|+..|++||.++|+.|..... .+||..+|++||.|.++-..
T Consensus 12 ~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I 76 (249)
T PLN03212 12 KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSV 76 (249)
T ss_pred CCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhc
Confidence 444433333344577899999999999999999999999987643 48999999999999997543
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.32 E-value=8e-07 Score=67.68 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 359 WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
||.+|++.|+.+|.+||. +|+.|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999998875 38999999999999443
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.28 E-value=1.7e-06 Score=91.10 Aligned_cols=54 Identities=26% Similarity=0.530 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
+-++.+||+||++.|+..|++||.++|+.|.+... .+||+.+|++||.|.+.-.
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPD 64 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCc
Confidence 33456799999999999999999999999987643 4899999999999998654
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.80 E-value=2.8e-05 Score=77.03 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
++.+||.||++.|++.+.+||. +|+.|...+ .+||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 4578999999999999999996 999999754 5999999999999988754
No 8
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.77 E-value=5.8e-05 Score=72.66 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhcc
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~ 411 (486)
+-+||+||++.|++-|++||.|+|..|.+.... .|+...|+-||.|.++-.+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCCCcc
Confidence 589999999999999999999999999988752 99999999999999986543
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.65 E-value=6.7e-05 Score=79.42 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
+.+||.||++.|++.+++||. +|+.|...+ .+||..++|.+|+.++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999754 599999999999998865
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.65 E-value=9e-05 Score=58.55 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhCCCCCCCChhhHHHH
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHRTPIDLRDK 401 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkW---k~Il~~~f~vf~~RT~VDLKDK 401 (486)
|+|..||+||-..+++||+.||.|+| +.|+..+.. ...|..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHH
Confidence 46888999999999999999999999 999987642 23388887743
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00064 Score=71.93 Aligned_cols=47 Identities=21% Similarity=0.515 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 358 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
-||.+|+-.|++|+++||.|||.+|.+... .||.-++|+.|.+..--
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhc
Confidence 499999999999999999999999999875 79999999999988753
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.17 E-value=0.00037 Score=56.05 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 356 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeK------yG~-----G--kWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
|..||.+|+.+|++.+.. ++. + -|..|.......=-.||+.+|++||.||.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999887 221 1 59999988521112899999999999999743
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.69 E-value=0.0027 Score=61.27 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
++..||+||++.|+++..+||. +|+.|.... ++||--++|.-|..-+|..
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~L----PGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRL----PGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhC----CCcCHHHHHHHHHHHHHHH
Confidence 3678999999999999999998 999999876 4999999999998877543
No 14
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.40 E-value=0.0037 Score=60.53 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCC-CCCChhhHHHHHHHHhhhhcccccc
Q 011420 354 KNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKN 415 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~vf-~~RT~VDLKDKWRNL~Kas~~p~~~ 415 (486)
..+-+||.+|++.|........ ...+.+|+..+.++| ..||+..|.+.||.|.++...+.|.
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~ 135 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQS 135 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhccc
Confidence 3578899999999999877764 468999999998888 6799999999999999988776553
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.23 E-value=0.0074 Score=66.38 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhcc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~ 411 (486)
++..||++|++.|..-|.++|. .|+.|-+.. +|.+.+++|+||+.++.+..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc
Confidence 5667999999999999999996 999999875 79999999999999998654
No 16
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.06 E-value=0.016 Score=46.27 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhCCCC-CCCChhhHHHHHHHHhhhh
Q 011420 357 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKy-----G~-----------GkWk~Il~~~f~vf-~~RT~VDLKDKWRNL~Kas 409 (486)
..||.+|.+.|++-|++| |. .-|..|...+-... ..||..+||.+|.||....
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 469999999999999998 31 26999999973332 4899999999999998643
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.92 E-value=0.0095 Score=66.33 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
++-+||++|+..|+.+|++||.--|..|...+ .+|+-.+|+++|-|.+..+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV----PNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc----CCccHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999765 4999999999999887543
No 18
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.80 E-value=0.0098 Score=53.20 Aligned_cols=55 Identities=24% Similarity=0.487 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~-------f~v-f~~RT~VDLKDKWRNL~Kas 409 (486)
..+.||.+|+..|+--+.+||. |.|..|+... |+. |..||+.+|+.+-..|+++-
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 4567999999999999999999 9999999883 333 38999999999999999863
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.53 E-value=0.012 Score=65.70 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=44.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 352 rRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++-+.-.||..|++.|+..|++||.|+|.+|.... .+||..++..+-+.++.+
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHHH
Confidence 34566779999999999999999999999999765 589998888777666654
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.05 E-value=0.1 Score=54.62 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 358 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 358 ~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
-|+..|+-.|++|.+.+|.|+|.+|.+... .|+.-++|+.|--+.-
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHh
Confidence 499999999999999999999999997654 7999999999976664
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.72 E-value=0.17 Score=58.93 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------CCC-CCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~-------f~v-f~~RT~VDLKDKWRNL~Kas 409 (486)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.|-..|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999998773 443 48999999999999999864
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.26 E-value=0.38 Score=48.48 Aligned_cols=54 Identities=24% Similarity=0.451 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCC-----hHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 356 QRMWTLSEVMKLIDGISQ----FGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeK----yG~Gk-----Wk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
...|+.+|+.+|++...+ |..|+ |..|.......=-.||+.+||.||.||.|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 688999999999998764 34465 9999985422224899999999999999854
No 23
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.12 E-value=0.37 Score=52.53 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
-..+..||.+|.-.|++||++||- .|.+|..+.. .||.-||=.|+..|=
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 345778999999999999999997 9999998764 899999999998764
No 24
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.51 E-value=0.19 Score=54.82 Aligned_cols=50 Identities=34% Similarity=0.710 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
+.+..||.+|+..|..-|.++|. .|+.|.... +|-+.+|.|+||+.++.+
T Consensus 289 ~~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 289 EQRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhcccc
Confidence 35667999999999999999995 999999764 799999999999999986
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=87.65 E-value=0.78 Score=50.25 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccccCCCCCccccccCCCHHH
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPV 432 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~~r~~~~rK~~~~~iP~~l 432 (486)
.++.-.|+..|++.|.-+|++||.-+|+.|...|. .||+-|++-+|-|-.. .+-+++. .-.+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~ln-----p~lk~~~--------~~~ee 79 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLN-----PQLKKKN--------WSEEE 79 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhc-----hhccccc--------ccHHH
Confidence 33455899999999999999999999999998874 5999999999944332 2222222 35677
Q ss_pred HHHHHHHhhhCCC-CCCcC
Q 011420 433 LCRIRELATIHPY-PRVPY 450 (486)
Q Consensus 433 L~RVreLA~~hpy-p~~~~ 450 (486)
..++..|+..+++ |....
T Consensus 80 d~~li~l~~~~~~~wstia 98 (512)
T COG5147 80 DEQLIDLDKELGTQWSTIA 98 (512)
T ss_pred HHHHHHHHHhcCchhhhhc
Confidence 7888888888877 65443
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=86.80 E-value=0.74 Score=50.21 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
-.+||.+|.-.|++||+.||. .|.+|..+.. ++|.-||=-|+-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg----tKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVG----TKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhC----CCCHHHHHHHHHcCC
Confidence 458999999999999999997 9999998864 899999887776553
No 27
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=86.09 E-value=1.7 Score=48.57 Aligned_cols=57 Identities=26% Similarity=0.515 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh-
Q 011420 354 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 407 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVe-------Ky------------------G~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K- 407 (486)
+.+.+||.||++.|++.|+ .| -.-+|..|-.. +..|+.++|+-||--|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~----~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM----LGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh----hcCCCcchHHHHHHHHHhh
Confidence 5788999999999999996 44 22389999984 359999999999999996
Q ss_pred hhccccc
Q 011420 408 ASYAHQK 414 (486)
Q Consensus 408 as~~p~~ 414 (486)
.++...+
T Consensus 510 ~s~n~~~ 516 (607)
T KOG0051|consen 510 PSFNKRQ 516 (607)
T ss_pred HHhhccc
Confidence 4444443
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=83.30 E-value=0.94 Score=49.99 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
.-|+--|++-|..+|.+||..+|+.|...+ +..|+-+|+-+|--.+-
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLD 54 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhC
Confidence 459999999999999999999999999887 47899999999975553
No 29
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=82.82 E-value=2 Score=35.01 Aligned_cols=51 Identities=25% Similarity=0.484 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhhc---C----CC-----ChHHHHHHhCCCC-CCCChhhHHHHHHHHhhh
Q 011420 358 MWTLSEVMKLIDGISQF---G----VG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 358 ~WT~EEveaLv~GVeKy---G----~G-----kWk~Il~~~f~vf-~~RT~VDLKDKWRNL~Ka 408 (486)
.||+++++.|++.+... | .| .|..|...+...+ ..-|..+||.||+.|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999988544 2 22 4888888864332 466889999999999973
No 30
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=81.89 E-value=0.85 Score=48.83 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh-CCCC-CCCChhhHHHHHHHHh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS-SHRTPIDLRDKWRNLL 406 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~vf-~~RT~VDLKDKWRNL~ 406 (486)
..||.+|++.|.+-.++|-. +|--|.+.| -+.| .+||--||||||...+
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 56999999999999999998 999999987 1223 4699999999995444
No 31
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.23 E-value=1.7 Score=41.85 Aligned_cols=65 Identities=22% Similarity=0.450 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-CCCC--CCCC------hhhHHHHH-----HHHhhhhccccccCCCC
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRT------PIDLRDKW-----RNLLRASYAHQKNKGEV 419 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~vf--~~RT------~VDLKDKW-----RNL~Kas~~p~~~r~~~ 419 (486)
...-|-..-+-.|+.||-+||-|+|.+|.++- |.++ +=++ ..+.|.|+ +-|-.+-.++.|-++.+
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkFLaRRfKLLEQaLvIEEqLrRAa 80 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAA 80 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 34567777888899999999999999999984 4443 1122 34788776 33334444554544443
No 32
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=76.44 E-value=5.3 Score=32.65 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CC--ChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 356 QRMWTLSEVMKLIDGISQF---G---VG--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKy---G---~G--kWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
|.++|.+|+.+|++=|.++ | .| =|+++...+. ..+|-.-++|+|+--++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 5789999999999999654 3 23 3777776654 489999999999665543
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=75.60 E-value=5.7 Score=34.42 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCC---ChHHHHHHhCCCC-CCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQF----GVG---KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKy----G~G---kWk~Il~~~f~vf-~~RT~VDLKDKWRNL~Ka 408 (486)
-.|-||++++-.|++|+-.| |.. .|..........+ ..=|..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999877 754 4444443332222 233778999999999964
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=70.73 E-value=6.9 Score=42.28 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=59.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh---ccccccCCCCCccccc
Q 011420 349 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS---YAHQKNKGEVDPKHAM 425 (486)
Q Consensus 349 ~gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas---~~p~~~r~~~~rK~~~ 425 (486)
.|+ ++..-+||.+|.+.+.+++..+|+ -++.|...|+ +|...++|-||.+--|.. +.+..+-+++-.--.-
T Consensus 359 ~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP----~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY 432 (507)
T COG5118 359 FGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP----NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEY 432 (507)
T ss_pred ccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC----chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHH
Confidence 344 667889999999999999999998 8999997764 899999999998776542 1222222222000000
Q ss_pred cCCCHHHHHHHHHHhhhC
Q 011420 426 RSLPKPVLCRIRELATIH 443 (486)
Q Consensus 426 ~~iP~~lL~RVreLA~~h 443 (486)
-.+-..+++.|-||+.-|
T Consensus 433 ~k~~~~~~e~l~Elq~E~ 450 (507)
T COG5118 433 NKLRSYLLEKLIELQNEH 450 (507)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 113445677777776544
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=62.26 E-value=4.1 Score=48.96 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCC--------CCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS--------SHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf--------~~RT~VDLKDKWRNL~Ka 408 (486)
.---|..+++..|+-||-+||.|+|..|+.+-.--| .-=+++.|.-+=.-|++.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~ 1193 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSL 1193 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHH
Confidence 455699999999999999999999999998842212 233467777776666654
No 36
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=45.29 E-value=50 Score=31.29 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhCCCCCCCChhhHHHHHHHHhhh-hccccccCCCCCccccccC
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-SYAHQKNKGEVDPKHAMRS 427 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~G------kWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka-s~~p~~~r~~~~rK~~~~~ 427 (486)
..+.||.+|+.+|++++..+... .|..|...... ..-|..-=+.=+|..+-.. ....- ...+. .+...+|
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i-~~~K~-~~~r~vp 174 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTV-RDSKF-GKSRLVP 174 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEE-EecCC-CCccEEe
Confidence 34569999999999999877643 25555544311 1355555555556554321 11111 11111 2234689
Q ss_pred CCHHHHHHHHHHh
Q 011420 428 LPKPVLCRIRELA 440 (486)
Q Consensus 428 iP~~lL~RVreLA 440 (486)
||+++.+-+.+..
T Consensus 175 l~~~l~~~l~~~~ 187 (299)
T cd01187 175 LHASTRAALRDYL 187 (299)
T ss_pred CCHHHHHHHHHHH
Confidence 9999887777653
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=36.88 E-value=39 Score=37.98 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+--|+.+|++.|+....-+-. +|..|.... +||+.+|-.+|-+|+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 345999999999999888876 999999754 8999999999999984
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=33.96 E-value=88 Score=29.10 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
+..++=|..|++.+..-|++||. .+..+..+---+.-..|.-+|+.+.+...
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56777899999999999999996 88888877542334789999998877653
No 39
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=32.02 E-value=13 Score=32.12 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=29.7
Q ss_pred ccccccccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCC
Q 011420 114 FHAANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGS 165 (486)
Q Consensus 114 ~~~~~~~s~~c~~~~ld~~~a~~~~~l~~gp~~~s~l~nssses~spg~sgs 165 (486)
|--.|+|+..|+.+ ++++.+.+.-+...|..+.++- -++|||+|+
T Consensus 19 iaf~Nel~~lce~~--giD~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~ 63 (96)
T PF00984_consen 19 IAFANELARLCEKL--GIDVYEVIEAANTDPRIGPHYL-----RPGPGFGGS 63 (96)
T ss_dssp HHHHHHHHHHHHHH--TSBHHHHHHHHHTSTTTTSSS------S-SSS--SS
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHccCcccccccC-----CCCCCCCCc
Confidence 34468999999997 5666676677777788763322 456788988
No 40
>smart00595 MADF subfamily of SANT domain.
Probab=29.59 E-value=53 Score=26.52 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.9
Q ss_pred ChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 378 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 378 kWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
-|..|...... |..+++-||++|-.
T Consensus 29 aW~~Ia~~l~~-----~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELGL-----SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHCc-----CHHHHHHHHHHHHH
Confidence 58888887642 99999999999974
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=27.97 E-value=57 Score=30.82 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.1
Q ss_pred cCCCHHHHHHHHHHhhhCCC
Q 011420 426 RSLPKPVLCRIRELATIHPY 445 (486)
Q Consensus 426 ~~iP~~lL~RVreLA~~hpy 445 (486)
+.+|.++|++|..+|...=+
T Consensus 87 VtVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 87 VTVPADLLERVLRLAEQALW 106 (139)
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 45899999999999987655
No 42
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=25.82 E-value=43 Score=37.45 Aligned_cols=55 Identities=18% Similarity=0.393 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
|-.---||..|...+-++++|||. ...+|..+|.+--.-++-|.-.=-|+.--|+
T Consensus 282 RDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyYYmwKttdRY 336 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYYYMWKTTDRY 336 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHHHHHhhhhHH
Confidence 345667999999999999999998 8999999985422345555555555544444
No 43
>PHA02095 hypothetical protein
Probab=23.61 E-value=36 Score=29.49 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.6
Q ss_pred ccccccccccccCCCccCCCCCccccc
Q 011420 49 SVDGVLSFGRENLGKSSGMDGFSYEFE 75 (486)
Q Consensus 49 svdg~l~~~~~n~~k~~~~~~f~~~f~ 75 (486)
-|||+||.+ -.+-.-|+||.|-.|
T Consensus 39 rvdgilcie---gd~~~pm~~f~~ii~ 62 (84)
T PHA02095 39 RVDGILCIE---GDKEHPMPDFEHIVE 62 (84)
T ss_pred eccEEEEec---CCCCCCchhheeeee
Confidence 489999997 347788999988777
No 44
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=22.63 E-value=98 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=27.9
Q ss_pred ccccccCCCHHHHHHHHHHhhhCCCCCCcCCcccC
Q 011420 421 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 455 (486)
Q Consensus 421 rK~~~~~iP~~lL~RVreLA~~hpyp~~~~~~~~~ 455 (486)
|+....+||.+.|.+|.+.|..-|-+.+.++-+|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 34444679999999999999999988877776654
Done!