Query 011420
Match_columns 486
No_of_seqs 149 out of 379
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 07:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 4.8E-25 1.6E-29 189.1 6.3 96 351-456 8-103 (105)
2 2roh_A RTBP1, telomere binding 99.9 3.3E-23 1.1E-27 182.0 8.4 95 350-454 25-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 6.7E-22 2.3E-26 163.1 9.8 81 357-447 1-81 (83)
4 2juh_A Telomere binding protei 99.9 3.4E-22 1.2E-26 175.3 7.4 96 350-455 11-106 (121)
5 1x58_A Hypothetical protein 49 99.7 1.3E-17 4.4E-22 132.3 6.6 54 354-409 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 1.4E-15 4.8E-20 119.3 6.9 55 354-410 9-63 (64)
7 1w0t_A Telomeric repeat bindin 99.5 8.2E-14 2.8E-18 104.2 6.6 52 355-408 1-52 (53)
8 1ity_A TRF1; helix-turn-helix, 99.5 1.3E-13 4.3E-18 108.1 7.4 59 351-411 5-63 (69)
9 1guu_A C-MYB, MYB proto-oncoge 99.1 9.6E-11 3.3E-15 86.7 5.9 48 356-407 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 99.0 2.5E-10 8.5E-15 86.9 6.0 51 354-408 6-56 (60)
11 1gvd_A MYB proto-oncogene prot 99.0 3.2E-10 1.1E-14 84.0 5.4 48 356-407 3-50 (52)
12 1x41_A Transcriptional adaptor 99.0 6.4E-10 2.2E-14 85.2 6.2 50 355-408 7-56 (60)
13 2dim_A Cell division cycle 5-l 98.9 1.4E-09 4.7E-14 85.2 6.4 52 354-409 7-58 (70)
14 2elk_A SPCC24B10.08C protein; 98.9 1.7E-09 5.9E-14 82.6 6.5 48 356-406 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.8 3.4E-09 1.2E-13 86.3 6.1 52 349-405 11-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.8 1.4E-08 4.8E-13 80.2 7.9 51 355-410 8-58 (72)
17 2din_A Cell division cycle 5-l 98.7 1.2E-08 4.1E-13 79.0 5.9 50 355-410 8-57 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.7 2.1E-08 7.1E-13 79.3 5.5 50 355-408 7-61 (75)
19 1gv2_A C-MYB, MYB proto-oncoge 98.6 2.8E-08 9.6E-13 82.2 5.5 48 356-407 4-51 (105)
20 3osg_A MYB21; transcription-DN 98.6 5.5E-08 1.9E-12 83.6 6.1 50 353-407 8-57 (126)
21 2llk_A Cyclin-D-binding MYB-li 98.6 4.5E-08 1.5E-12 79.1 5.1 48 355-408 22-69 (73)
22 2k9n_A MYB24; R2R3 domain, DNA 98.6 6.4E-08 2.2E-12 81.0 5.9 47 357-407 2-48 (107)
23 1h8a_C AMV V-MYB, MYB transfor 98.5 8E-08 2.7E-12 82.3 6.1 49 355-407 26-74 (128)
24 3osg_A MYB21; transcription-DN 98.5 8.8E-08 3E-12 82.3 6.0 55 355-414 61-115 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.5 9.2E-08 3.1E-12 79.1 5.4 49 355-408 55-103 (105)
26 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.6E-07 5.5E-12 78.5 6.5 49 355-408 52-100 (107)
27 2cqr_A RSGI RUH-043, DNAJ homo 98.5 1.2E-07 4.2E-12 76.5 4.9 52 353-408 15-69 (73)
28 3zqc_A MYB3; transcription-DNA 98.5 2E-07 6.8E-12 80.5 6.4 53 355-412 53-105 (131)
29 3zqc_A MYB3; transcription-DNA 98.4 1.2E-07 3.9E-12 81.9 4.4 49 356-408 2-50 (131)
30 1h8a_C AMV V-MYB, MYB transfor 98.4 2.5E-07 8.7E-12 79.2 4.7 49 355-408 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.3 7.7E-07 2.6E-11 78.6 5.7 49 355-407 57-105 (159)
32 2ltp_A Nuclear receptor corepr 97.6 1.1E-07 3.7E-12 78.4 0.0 50 355-409 15-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.2 1.4E-06 5E-11 76.9 4.7 49 355-408 109-157 (159)
34 2cjj_A Radialis; plant develop 98.1 3.2E-06 1.1E-10 71.1 6.0 49 356-408 8-59 (93)
35 2eqr_A N-COR1, N-COR, nuclear 97.9 2.6E-05 8.9E-10 60.1 6.8 53 350-407 6-58 (61)
36 3hm5_A DNA methyltransferase 1 97.8 3.9E-05 1.3E-09 65.0 6.4 51 357-408 31-82 (93)
37 1ign_A Protein (RAP1); RAP1,ye 97.7 2.4E-05 8.1E-10 76.1 4.5 52 355-410 7-63 (246)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.6 9.2E-05 3.1E-09 59.5 6.4 49 355-408 7-58 (72)
39 1wgx_A KIAA1903 protein; MYB D 97.2 0.00054 1.9E-08 55.8 5.8 50 356-409 8-60 (73)
40 2ebi_A DNA binding protein GT- 97.1 0.00017 5.8E-09 58.2 2.4 55 355-409 3-66 (86)
41 4b4c_A Chromodomain-helicase-D 97.1 0.0007 2.4E-08 61.6 6.3 53 356-408 134-196 (211)
42 2iw5_B Protein corest, REST co 97.1 0.00065 2.2E-08 65.8 6.0 51 353-408 130-180 (235)
43 4iej_A DNA methyltransferase 1 97.0 0.0012 4.1E-08 56.2 6.3 51 357-408 31-82 (93)
44 2crg_A Metastasis associated p 96.6 0.0057 1.9E-07 48.6 7.3 58 353-414 5-62 (70)
45 2yqk_A Arginine-glutamic acid 96.6 0.0052 1.8E-07 47.8 6.9 51 353-407 6-56 (63)
46 4b4c_A Chromodomain-helicase-D 96.3 0.0069 2.4E-07 55.0 6.9 54 353-408 4-59 (211)
47 1ofc_X ISWI protein; nuclear p 96.2 0.0034 1.1E-07 62.5 4.4 54 356-409 212-276 (304)
48 1fex_A TRF2-interacting telome 96.1 0.0061 2.1E-07 47.2 4.5 49 356-407 2-58 (59)
49 2xb0_X Chromo domain-containin 95.8 0.0045 1.5E-07 60.6 3.5 30 357-386 169-198 (270)
50 2y9y_A Imitation switch protei 95.2 0.015 5.3E-07 59.4 5.0 55 356-410 228-293 (374)
51 1irz_A ARR10-B; helix-turn-hel 95.2 0.059 2E-06 43.0 7.1 54 352-407 3-61 (64)
52 2xag_B REST corepressor 1; ami 94.8 0.032 1.1E-06 58.7 6.0 49 354-407 378-426 (482)
53 4eef_G F-HB80.4, designed hema 92.9 0.026 9E-07 46.4 0.9 43 356-402 20-65 (74)
54 4a69_C Nuclear receptor corepr 92.3 0.09 3.1E-06 43.9 3.3 49 352-405 39-87 (94)
55 2xb0_X Chromo domain-containin 89.3 0.63 2.1E-05 45.6 6.6 53 355-409 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 84.0 3.1 0.00011 35.6 7.2 54 353-410 30-85 (95)
57 2lr8_A CAsp8-associated protei 77.2 0.58 2E-05 38.2 0.0 50 355-409 13-64 (70)
58 1ign_A Protein (RAP1); RAP1,ye 75.0 3.8 0.00013 40.1 5.6 29 377-409 172-200 (246)
59 1ofc_X ISWI protein; nuclear p 49.1 17 0.00059 36.2 4.8 48 356-407 110-157 (304)
60 3ukx_C Bimax2 peptide; arm rep 47.5 9.3 0.00032 26.0 1.8 11 324-334 10-20 (28)
61 3ukw_C Bimax1 peptide; arm rep 41.8 7.9 0.00027 26.4 0.8 16 312-331 2-17 (28)
62 2xag_B REST corepressor 1; ami 36.9 7.2 0.00025 41.2 0.0 44 356-404 189-232 (482)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.91 E-value=4.8e-25 Score=189.11 Aligned_cols=96 Identities=26% Similarity=0.572 Sum_probs=81.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccccCCCCCccccccCCCH
Q 011420 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 430 (486)
Q Consensus 351 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~~r~~~~rK~~~~~iP~ 430 (486)
.+||++++||+||+++|++||++||.|+|+.|+..+|..|.+||.+|||||||||+|.+.++.+.+++ .+||+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 45788999999999999999999999999999999988889999999999999999977665443333 35999
Q ss_pred HHHHHHHHHhhhCCCCCCcCCcccCC
Q 011420 431 PVLCRIRELATIHPYPRVPYSKKCNG 456 (486)
Q Consensus 431 ~lL~RVreLA~~hpyp~~~~~~~~~~ 456 (486)
++|+||++ +|+||.+.++|+-.-
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~~ 103 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQQ 103 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhc
Confidence 99999995 677888887776543
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.88 E-value=3.3e-23 Score=181.95 Aligned_cols=95 Identities=28% Similarity=0.557 Sum_probs=81.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccccCCCCCccccccCCC
Q 011420 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 429 (486)
Q Consensus 350 gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~~r~~~~rK~~~~~iP 429 (486)
..+||++++||.||+++|++||++||.|+|+.|+..+|..|.+||++|||||||||+|.+.++.+.++. .++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p 97 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVP 97 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCC
Confidence 346788999999999999999999999999999999888889999999999999999977655443332 3589
Q ss_pred HHHHHHHHHHhhhCCCCCCcCCccc
Q 011420 430 KPVLCRIRELATIHPYPRVPYSKKC 454 (486)
Q Consensus 430 ~~lL~RVreLA~~hpyp~~~~~~~~ 454 (486)
+++++||+ .+|.||.++++++.
T Consensus 98 ~e~~~~v~---~~h~~~g~~~~~~~ 119 (122)
T 2roh_A 98 QELLDRVL---AAQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHH---HHHHHHHSSCSCCC
T ss_pred HHHHHHHH---HHHHHHhhHHhhhh
Confidence 99999999 56777878888765
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.86 E-value=6.7e-22 Score=163.06 Aligned_cols=81 Identities=30% Similarity=0.666 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccccCCCCCccccccCCCHHHHHHH
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLCRI 436 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~~r~~~~rK~~~~~iP~~lL~RV 436 (486)
++||+||+++|++||++||.|+|++|++.+|..|.+||.+|||||||||+|.+..+.+.+++ .|||+++++||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-------~~~p~~~~~rv 73 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVPQDLLDRV 73 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-------SCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999887789999999999999999987765443322 35999999999
Q ss_pred HHHhhhCCCCC
Q 011420 437 RELATIHPYPR 447 (486)
Q Consensus 437 reLA~~hpyp~ 447 (486)
++| |+||+
T Consensus 74 ~~~---~a~~~ 81 (83)
T 2ckx_A 74 LAA---HAYWS 81 (83)
T ss_dssp HHH---HHHHH
T ss_pred HHH---HHHHh
Confidence 955 45553
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.86 E-value=3.4e-22 Score=175.32 Aligned_cols=96 Identities=27% Similarity=0.574 Sum_probs=81.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccccCCCCCccccccCCC
Q 011420 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 429 (486)
Q Consensus 350 gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~~r~~~~rK~~~~~iP 429 (486)
.+.|+++++||+||+++|++||++||.|+|+.|+..++.+|.+||.+|||||||||++.+.++.+.++. +++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~p 83 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVP 83 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCCC
Confidence 456888999999999999999999999999999999988889999999999999999977664443332 3599
Q ss_pred HHHHHHHHHHhhhCCCCCCcCCcccC
Q 011420 430 KPVLCRIRELATIHPYPRVPYSKKCN 455 (486)
Q Consensus 430 ~~lL~RVreLA~~hpyp~~~~~~~~~ 455 (486)
+++++||+ .+|.||.++++|...
T Consensus 84 ~e~~~rv~---~~h~~~gn~~~~~~~ 106 (121)
T 2juh_A 84 QDLLDRVL---AAHAYWSQQQGKQHV 106 (121)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSCC
T ss_pred HHHHHHHH---HHHHHHccchhccCC
Confidence 99999999 667778888888543
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.3e-17 Score=132.31 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
+++++||+||+++|++||++||. +|++|+..|.- |.+||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 47889999999999999999999 99999999843 68999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=1.4e-15 Score=119.30 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
+++++||+||+++|+++|++||.++|+.|...++ |.+||++||+||||||+|.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 3467899999999999999999999999998875 579999999999999998754
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.46 E-value=8.2e-14 Score=104.18 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++.+||+||++.|+++|++||.++|+.|...+. |.+||++||+++|+|++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 367899999999999999999999999998864 4589999999999999985
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.45 E-value=1.3e-13 Score=108.09 Aligned_cols=59 Identities=25% Similarity=0.598 Sum_probs=52.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhcc
Q 011420 351 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 411 (486)
Q Consensus 351 krRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~ 411 (486)
..++++.+||+||+++|+++|++||.++|+.|...+. |.+||.++|+++|+|+++..+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCC
Confidence 3467789999999999999999999999999998764 4599999999999999987654
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.10 E-value=9.6e-11 Score=86.71 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|++++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999999999764 58999999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=2.5e-10 Score=86.86 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.++.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.++++-
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCC
Confidence 456789999999999999999999999999874 589999999999998864
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.01 E-value=3.2e-10 Score=84.04 Aligned_cols=48 Identities=29% Similarity=0.601 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.|.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999999999764 59999999999999874
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.98 E-value=6.4e-10 Score=85.25 Aligned_cols=50 Identities=20% Similarity=0.523 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.+.+||+||++.|+++|++||.++|+.|..... +||..+++++|.+++..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccC
Confidence 467899999999999999999999999998774 89999999999998754
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=85.19 Aligned_cols=52 Identities=21% Similarity=0.504 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
.++.+||+||++.|+++|++||.++|+.|.... .+||..+|+++|.|.++-.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCc
Confidence 356789999999999999999999999999875 4899999999999988643
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.92 E-value=1.7e-09 Score=82.60 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 406 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~ 406 (486)
+.+||++|++.|+++|++||.++|+.|..... .+||..+|+++|.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998764 2899999999999864
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.84 E-value=3.4e-09 Score=86.31 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=46.2
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHH
Q 011420 349 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405 (486)
Q Consensus 349 ~gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL 405 (486)
.+..+..+.+||.+|++.|+++|++|| ++|..|..... +||..+|+.+|.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 444566688999999999999999999 89999998764 89999999999887
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79 E-value=1.4e-08 Score=80.15 Aligned_cols=51 Identities=25% Similarity=0.573 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
++.+||+||++.|+++|++||. +|+.|...+ .+||..++|.+|.++++...
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999999854 48999999999999997643
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=79.03 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
++.+||.||++.|+++|++||. +|+.|.. +. +||..+++++|.++++...
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHh
Confidence 4568999999999999999998 9999998 53 7999999999999997543
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.1e-08 Score=79.28 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~-----GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.+.+||.||++.|+++|++||. ++|..|..... +||..|++++|.++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999996 79999998764 89999999999888754
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.64 E-value=2.8e-08 Score=82.19 Aligned_cols=48 Identities=27% Similarity=0.586 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+.+||+||++.|+.+|++||.++|..|.... .+||+.+|+++|++.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccC
Confidence 5689999999999999999999999998653 59999999999999874
No 20
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.59 E-value=5.5e-08 Score=83.59 Aligned_cols=50 Identities=26% Similarity=0.488 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
..++.+||+||++.|+.+|++||. +|+.|.... .+||..+|+++|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcc
Confidence 445778999999999999999998 999998654 58999999999999885
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.58 E-value=4.5e-08 Score=79.13 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++.+||+||++.|++.|++||. +|+.|.+. | +||..++|++|+.|.+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 4678999999999999999998 69999976 4 89999999999988653
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.57 E-value=6.4e-08 Score=80.96 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
.+||+||++.|+.+|++||.++|..|.... .+||+.+|+++|+|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHc
Confidence 579999999999999999999999999765 48999999999999875
No 23
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.55 E-value=8e-08 Score=82.34 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
++.+||+||++.|+++|++||.++|..|.... .+||..+++++|.+.+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcc
Confidence 45789999999999999999999999999764 59999999999999875
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.54 E-value=8.8e-08 Score=82.34 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 414 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~ 414 (486)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||++|++|++.-..|..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC---
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4568999999999999999995 99999964 3699999999999999987555443
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.52 E-value=9.2e-08 Score=79.11 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++.+||+||++.|+.+|++||. +|+.|... |.+||..++|++|++++|.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999996 99999864 4699999999999999864
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.50 E-value=1.6e-07 Score=78.54 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.+.+||+||++.|+.+|.+||. +|+.|...+ .+||..++|++|++|++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999997 999999764 599999999999999975
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.47 E-value=1.2e-07 Score=76.52 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
+-.+.+||.+|+..|+.+|++||. .+|..|.... .+||..+++.+|.+|++-
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHc
Confidence 445678999999999999999994 5999999765 489999999999999863
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.46 E-value=2e-07 Score=80.45 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 412 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p 412 (486)
.+.+||+||++.|+++|.+||. +|+.|... |.+||..+||++|+++++.....
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhhc
Confidence 3468999999999999999995 99999864 36999999999999999865443
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.44 E-value=1.2e-07 Score=81.94 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
+.+||+||++.|+.+|++||.++|..|.... .+||..+|+++|+|.+.-
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTST
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCc
Confidence 4579999999999999999999999998543 599999999999998853
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.37 E-value=2.5e-07 Score=79.22 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++.+||+||++.|+++|++||. +|+.|... |.+||..++|++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999997 99999964 3599999999999999864
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.28 E-value=7.7e-07 Score=78.63 Aligned_cols=49 Identities=27% Similarity=0.555 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
.+.+||+||++.|+.+|++||.++|+.|.... .+||..+++++|.|++.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998999998653 59999999999999875
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.59 E-value=1.1e-07 Score=78.43 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
.+.+||.||++.|+++|++||. +|+.|.... .+||..+++.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3568999999999999999999 899998653 5999999999999998753
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.15 E-value=1.4e-06 Score=76.86 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
++.+||++|++.|+++|++||. +|+.|... |.+||..++|.+|+.|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999997 99999964 4699999999999998864
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.12 E-value=3.2e-06 Score=71.08 Aligned_cols=49 Identities=18% Similarity=0.514 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG---~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
..+||.||+..|..++.+|| ..+|..|.... .+||..+++.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v----pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV----EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS----TTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 45799999999999999998 45799999876 489999999999999753
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=2.6e-05 Score=60.10 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=45.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 350 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 350 gkrRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
.+.|+...+||++|.+.+++|+.+||. +|..|.... .+||..|+...|....|
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcC
Confidence 345677899999999999999999996 999998543 59999999999976654
No 36
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.76 E-value=3.9e-05 Score=64.99 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhC-CCCCCCChhhHHHHHHHHhhh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~f-~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.+||.||++.|.+-+++||. +|..|.+.|- ..+..||..|||++|..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999997 9999999983 334689999999999988874
No 37
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.69 E-value=2.4e-05 Score=76.10 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 355 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~Gk-----Wk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
.+.+||+||++.|++.|++||..+ |+.|... +.+||.-++|++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 456899999999999999999853 9999964 469999999999999998654
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.63 E-value=9.2e-05 Score=59.54 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
....||.||...|.++|.+|+. .+|..|.... +||..+++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 5799999874 69999999999999875
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.18 E-value=0.00054 Score=55.75 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
...||.+|..+|..++..|+. ++|..|..... +||..+++.+|.-|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhcc
Confidence 357999999999999999986 68999998764 799999999999986653
No 40
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.13 E-value=0.00017 Score=58.17 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----C-----CChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFG----V-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG----~-----GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
....||.+|+.+|+......- . ..|..|.......=-.||+.+|++||.||.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 467799999999999987532 1 279999887421101799999999999999853
No 41
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.09 E-value=0.0007 Score=61.58 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhC---C------C-CCCCChhhHHHHHHHHhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---S------S-SSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f---~------v-f~~RT~VDLKDKWRNL~Ka 408 (486)
...||.+|+..|+.||.+||.|+|..|+++.. . . ...++++.|..+--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999841 1 1 2567788899887777664
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.06 E-value=0.00065 Score=65.77 Aligned_cols=51 Identities=18% Similarity=0.451 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
.|...+||++|.+.+++|+.+||. +|..|.+.. .+||..++|.-|.+..|.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 457888999999999999999997 899999875 489999999999877753
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.99 E-value=0.0012 Score=56.17 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh-CCCCCCCChhhHHHHHHHHhhh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~-f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
..||.||+..|.+-+++|+. +|-.|.+.| +..+..||--|||++|-.+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999997 999999998 3345689999999999877753
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.63 E-value=0.0057 Score=48.59 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhccccc
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 414 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~~p~~ 414 (486)
|+....||++|.+...+|+.+||. +|..|...+ +..||..||..-|-...|.....++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchHHHH
Confidence 567889999999999999999999 899999743 3589999999988866655444333
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0052 Score=47.76 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+.....||++|.+...+|+.+||. +|..|...+. ..||..||..-|-...|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v---~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELL---PNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSC---TTSCHHHHHHHHHHHHC
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHc---CCCcHHHHHHHHhcccC
Confidence 445678999999999999999999 8999987543 58999999887765544
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.32 E-value=0.0069 Score=55.04 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCCCCCChhhHHHHHHHHhhh
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 408 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Ka 408 (486)
|.....||..|...|+.|+.+|| .++|..|..+.. |..+|..++++=.+.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999 689999999853 6799999999877766643
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.19 E-value=0.0034 Score=62.54 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHHhhhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~-------f~v-f~~RT~VDLKDKWRNL~Kas 409 (486)
.+.||.+|+..|+-++.+||. |.|..|+.+. |+. |..||+++|..+-..|+++-
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 347999999999999999999 9999998652 333 38999999999999999863
No 48
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.08 E-value=0.0061 Score=47.18 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKy--------G~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
|.+||+||+.+|++-|.+| |.--|+.|.... +..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 556799987721 369999999999987654
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.84 E-value=0.0045 Score=60.62 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 011420 357 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 386 (486)
Q Consensus 357 r~WT~EEveaLv~GVeKyG~GkWk~Il~~~ 386 (486)
..|+.+|+..|+.||.+||.|+|..|+.+.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 459999999999999999999999999985
No 50
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.24 E-value=0.015 Score=59.42 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHHhhhhc
Q 011420 356 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~---GkWk~Il~~~-------f~v-f~~RT~VDLKDKWRNL~Kas~ 410 (486)
.+.||.+|+..|+-++.+||. |+|..|+.+. |+- |..||+..|..+-..|+++-.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 347999999999999999999 9999998872 333 389999999999999998643
No 51
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.17 E-value=0.059 Score=43.00 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=43.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhCCCCCCCChhhHH---HHHHHHhh
Q 011420 352 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 407 (486)
Q Consensus 352 rRK~rr~WT~EEveaLv~GVeKyG~G--kWk~Il~~~f~vf~~RT~VDLK---DKWRNL~K 407 (486)
.+|+|..||+|.-+.++++|+++|.. .|+.|++... ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999953 3899998865 3688988888 56666554
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.81 E-value=0.032 Score=58.70 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 354 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 354 K~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
+..-+||.+|.+.+++||.+||. +|..|..... .||..++|.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg----TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 46778999999999999999998 9999998864 8999999998866544
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=92.89 E-value=0.026 Score=46.38 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhCCCCCCCChhhHHHHH
Q 011420 356 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 402 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~G---kWk~Il~~~f~vf~~RT~VDLKDKW 402 (486)
-..||.+|..+|..++.+|..+ +|..|.... .+||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V----pGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV----KGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS----CSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc----CCCCHHHHHHHH
Confidence 4579999999999999999976 999998765 489999998765
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.27 E-value=0.09 Score=43.90 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=40.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHH
Q 011420 352 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 405 (486)
Q Consensus 352 rRK~rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL 405 (486)
.|+....||++|.+.+.+|+.+||. +|..|... +..||..+|-.=+-..
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhcc
Confidence 3467889999999999999999998 99999533 4699999998655433
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.29 E-value=0.63 Score=45.61 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG--~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
+++.||..|+..|++++.+|| .++|..|..+. .|..+....|+.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999 48999999885 368999999998888776543
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=84.01 E-value=3.1 Score=35.65 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=46.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhCCCCCCCChhhHHHHHHHHhhhhc
Q 011420 353 RKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 410 (486)
Q Consensus 353 RK~rr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas~ 410 (486)
-.+-.-||.||+..++...++-|. -.|+.|.... .+|+.-++++|++.|++.-+
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999986 4899988775 48999999999999998643
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=77.23 E-value=0.58 Score=38.20 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 355 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 355 ~rr~WT~EEveaLv~GVeKyG~--GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
.-..||.||+..++..+++-|. -.|+.|... + +||+-+++++++.|++.-
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 4667999999999999999986 367766643 5 899999999999998753
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=74.97 E-value=3.8 Score=40.07 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.4
Q ss_pred CChHHHHHHhCCCCCCCChhhHHHHHHHHhhhh
Q 011420 377 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 409 (486)
Q Consensus 377 GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~Kas 409 (486)
+.|+.|.+.+ .+||.+..|||||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3799998775 4999999999999998754
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=49.08 E-value=17 Score=36.24 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHHhh
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 407 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRNL~K 407 (486)
-..||..+-.+++.|+.+||...|..|..... +.|..+++.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~----~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE----GKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST----TCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence 44599999999999999999999999997653 7899999877666664
No 60
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=47.51 E-value=9.3 Score=26.02 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=7.9
Q ss_pred ccccCCCCCCC
Q 011420 324 LGFESDDDIFS 334 (486)
Q Consensus 324 ~t~E~Dd~~d~ 334 (486)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 56799986553
No 61
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=41.76 E-value=7.9 Score=26.36 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.7
Q ss_pred cccCCCCCCCCCccccCCCC
Q 011420 312 LRGGRLKKRSPILGFESDDD 331 (486)
Q Consensus 312 ~R~srm~kn~Sa~t~E~Dd~ 331 (486)
.|+.||+| +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35666777 88999874
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=36.91 E-value=7.2 Score=41.21 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHH
Q 011420 356 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRN 404 (486)
Q Consensus 356 rr~WT~EEveaLv~GVeKyG~GkWk~Il~~~f~vf~~RT~VDLKDKWRN 404 (486)
...||.+|...+.+|+.+||. +|..|... +.+||.-+|-.-|..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFYYS 232 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHhcc
Confidence 357999999999999999998 89999853 357887777654433
Done!