Query 011423
Match_columns 486
No_of_seqs 306 out of 729
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 01:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2480 3-hydroxy-3-methylglut 100.0 1E-149 3E-154 1163.5 34.9 457 24-481 42-521 (602)
2 cd00643 HMG-CoA_reductase_clas 100.0 1E-114 2E-119 894.6 32.0 341 137-481 1-345 (403)
3 TIGR00920 2A060605 3-hydroxy-3 100.0 1E-113 2E-118 941.1 32.1 349 133-481 458-809 (886)
4 TIGR00533 HMG_CoA_R_NADP 3-hyd 100.0 1E-111 3E-116 871.6 32.2 342 134-481 1-349 (402)
5 PF00368 HMG-CoA_red: Hydroxym 100.0 4E-102 8E-107 797.7 16.5 318 161-481 1-320 (373)
6 COG1257 HMG1 Hydroxymethylglut 100.0 1.1E-99 2E-104 784.5 26.5 340 139-481 2-345 (436)
7 TIGR00532 HMG_CoA_R_NAD hydrox 100.0 7.9E-91 1.7E-95 716.7 25.2 312 144-481 3-342 (393)
8 cd00644 HMG-CoA_reductase_clas 100.0 2.6E-89 5.7E-94 709.7 25.3 301 159-481 2-326 (417)
9 cd00365 HMG-CoA_reductase Hydr 100.0 8.1E-87 1.8E-91 684.0 27.7 309 151-481 1-325 (376)
10 COG1257 HMG1 Hydroxymethylglut 93.4 0.021 4.7E-07 61.4 -0.1 29 419-448 273-302 (436)
11 PF14150 YesK: YesK-like prote 71.9 4.2 9.1E-05 34.9 3.2 57 35-95 1-58 (81)
12 PRK09509 fieF ferrous iron eff 64.9 24 0.00052 35.8 7.5 72 283-354 213-285 (299)
13 PF14715 FixP_N: N-terminal do 55.9 13 0.00028 29.2 3.0 25 31-55 18-42 (51)
14 TIGR01297 CDF cation diffusion 54.4 84 0.0018 30.7 9.1 67 283-349 192-259 (268)
15 PF14012 DUF4229: Protein of u 51.6 21 0.00046 29.4 3.7 30 33-62 30-59 (69)
16 COG0053 MMT1 Predicted Co/Zn/C 49.7 73 0.0016 32.9 8.1 80 282-361 214-293 (304)
17 COG1862 YajC Preprotein transl 41.6 21 0.00045 31.6 2.3 27 34-60 6-32 (97)
18 PF01545 Cation_efflux: Cation 41.3 1.1E+02 0.0024 30.0 7.7 65 285-349 207-272 (284)
19 PF09551 Spore_II_R: Stage II 35.5 63 0.0014 30.1 4.6 58 267-328 38-112 (130)
20 PF11947 DUF3464: Protein of u 33.9 94 0.002 29.7 5.6 58 26-97 46-117 (153)
21 TIGR02837 spore_II_R stage II 33.7 65 0.0014 31.3 4.5 56 269-328 75-147 (168)
22 TIGR00782 ccoP cytochrome c ox 31.6 41 0.00088 34.2 3.0 25 31-55 24-48 (285)
23 PF07293 DUF1450: Protein of u 30.7 1.2E+02 0.0025 26.0 5.0 58 328-392 11-70 (78)
24 PRK13669 hypothetical protein; 30.4 1.4E+02 0.0031 25.6 5.5 56 332-392 14-70 (78)
25 PRK14645 hypothetical protein; 30.4 2.8E+02 0.0061 26.2 8.1 94 283-376 6-105 (154)
26 PF01578 Cytochrom_C_asm: Cyto 29.5 99 0.0021 29.5 5.1 49 40-99 163-211 (214)
27 PF13858 DUF4199: Protein of u 28.7 1.8E+02 0.0039 26.4 6.4 48 39-90 34-84 (163)
28 PF02114 Phosducin: Phosducin; 28.3 2.1E+02 0.0045 29.3 7.3 95 270-372 98-209 (265)
29 TIGR03063 srtB_target sortase 27.1 63 0.0014 22.9 2.4 26 25-56 2-27 (29)
30 PF07045 DUF1330: Protein of u 26.9 60 0.0013 25.8 2.6 42 237-282 17-59 (65)
31 PRK13108 prolipoprotein diacyl 26.8 1.2E+02 0.0026 33.6 5.7 43 46-88 228-272 (460)
32 COG5548 Small integral membran 26.5 93 0.002 27.9 3.8 48 36-99 30-77 (105)
33 PF09580 Spore_YhcN_YlaJ: Spor 26.1 4.3E+02 0.0093 24.5 8.5 68 285-356 74-141 (177)
34 PF07074 TRAP-gamma: Transloco 25.2 46 0.00099 32.4 1.9 49 27-82 117-167 (170)
35 PRK13454 F0F1 ATP synthase sub 24.8 67 0.0015 30.7 3.0 21 36-56 30-50 (181)
36 PRK14646 hypothetical protein; 22.6 4.3E+02 0.0094 24.9 7.8 93 286-378 7-105 (155)
37 PF06129 Chordopox_G3: Chordop 21.6 74 0.0016 28.9 2.4 21 36-56 2-22 (109)
38 PRK14630 hypothetical protein; 21.2 4.4E+02 0.0096 24.6 7.5 81 296-376 20-100 (143)
39 TIGR02206 intg_mem_TP0381 cons 20.9 1.7E+02 0.0038 28.9 5.1 41 60-102 63-109 (222)
40 PRK03557 zinc transporter ZitB 20.7 8.6E+02 0.019 25.0 10.2 73 285-360 222-296 (312)
41 cd02987 Phd_like_Phd Phosducin 20.4 5.9E+02 0.013 24.1 8.4 91 274-372 39-146 (175)
No 1
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-149 Score=1163.52 Aligned_cols=457 Identities=62% Similarity=0.928 Sum_probs=429.5
Q ss_pred CCCCCCCccchhhhhhhhHHHHHHHHHHHHHHHhH--hhhccCCCccccchhHHHHHHHH-HHHHHHHHhhcCccccccc
Q 011423 24 TPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWR--EKIRNSTPLHVVTLSEIAAIVSL-IASFIYLLGFFGIDFVQSF 100 (486)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (486)
..++++.+|||+|+++..|+.|||+++|+++++|+ +|+|.|+|||++++++..+.... +++++|+++|++|+++|++
T Consensus 42 ~~~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (602)
T KOG2480|consen 42 VCKASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSV 121 (602)
T ss_pred cchhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhc
Confidence 45689999999999999999999999999999999 99999999999999999998888 9999999999999999999
Q ss_pred cCCCCCccccc----ccCCCCCCC--CCCC---Cc-------c-cccCCCCCHHHHHHHHHcCCCCcccccccCCChhHh
Q 011423 101 ISRATPEAWDL----EEDDSDIIS--RPPA---PI-------S-ITTLSSAQDEDVVQSVIDGSIPSYALESKLGDCRRA 163 (486)
Q Consensus 101 ~~~~~~~~~~~----~~~~~~~~~--~~~~---~~-------~-~~~~~~~~~~ei~~~v~~g~~~~~~les~l~d~~ra 163 (486)
+++...+.|.. ...+.+..+ .+|. +. . -...-+.+|+||+++|..|++|+|+|||+|+|++||
T Consensus 122 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~l~~~~~~~~~g~~~~~~~d~Eiv~lv~~G~~p~y~lEs~l~d~~Ra 201 (602)
T KOG2480|consen 122 ISDDDVESWVTDRTILCVSGRLVTFPSIPKPIRPLLEILNLFPSGQEVKSLSDEEIVQLVIAGKIPLYALESKLGDAERA 201 (602)
T ss_pred cccccccccccccccccCCCcccccCCCCCCccchhhhcccCccccccccCChHHHHHHhhcCcccceeccccccchhhh
Confidence 98888887743 222222211 1111 11 0 111245689999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC---CCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhhhh
Q 011423 164 AAIRREALQKMTGRSLQ---GLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGC 240 (486)
Q Consensus 164 ~~~RR~~l~~~tg~sl~---~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtEgsLVASanRGa 240 (486)
+.+||++|.+.++.+.. .+|+++|||+++.++||||+|||+||||||||||+|||++|||||||||||||||+||||
T Consensus 202 v~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~VPMATTEGaLVAStnRGc 281 (602)
T KOG2480|consen 202 VSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYYVPMATTEGALVASTNRGC 281 (602)
T ss_pred HHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEEeeeccccchhhHhhccch
Confidence 99999999999998766 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEee
Q 011423 241 KAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCT 320 (486)
Q Consensus 241 Kai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~d 320 (486)
|+|+.+||+++++.+|+|||+||++|+++++|.++|.||+.||||+.|+++||++|||+|||+|++.++|+++|+||...
T Consensus 282 KaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq~i~~~iaG~~lyiRF~~~ 361 (602)
T KOG2480|consen 282 KAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQSIHTTIAGRNLYIRFCTS 361 (602)
T ss_pred hheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhheeeEEeecceeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEecccchHHHHHHHHcCCHHHHHh
Q 011423 321 TGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVE 400 (486)
Q Consensus 321 TgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLkts~~al~e 400 (486)
||||||||||+|++|+++.+|.++||+|++++||||||+||||+|+|||+||||+|+||++||.++|+++|||++++|+|
T Consensus 362 TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~Ip~~vvr~VLkt~v~aLve 441 (602)
T KOG2480|consen 362 TGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATIPGEVVRKVLKTTVEALVE 441 (602)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEeccHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeeeEEecCCCcEEEEEEeCceeeEeeeccccc
Q 011423 401 LNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVELNL 480 (486)
Q Consensus 401 ln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l 480 (486)
+|..||+.|||||||+||||+|++|+|+|||||||||+||+||||||+|.||... ++|||+|||||||+||||||||.|
T Consensus 442 ln~~KnliGSAmAGSvGGfNAHAANiVtAvFlAtGQDpAQnVeSSnCiT~Me~~~-d~DL~iSvtMPsIEVGTVGGGT~L 520 (602)
T KOG2480|consen 442 LNILKNLIGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLMEAST-DGDLYISVTMPSIEVGTVGGGTVL 520 (602)
T ss_pred HHhhhhhhhhhhhccccCcchhHHHHHHHHHHHhCCChHHhcccchhhhhheecc-CCCeEEEEecccEEEEeecCcccc
Confidence 9999999999999999999999999999999999999999999999999999864 469999999999999999999988
Q ss_pred c
Q 011423 481 L 481 (486)
Q Consensus 481 ~ 481 (486)
.
T Consensus 521 ~ 521 (602)
T KOG2480|consen 521 E 521 (602)
T ss_pred C
Confidence 5
No 2
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=1e-114 Score=894.63 Aligned_cols=341 Identities=60% Similarity=0.899 Sum_probs=333.0
Q ss_pred HHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEE
Q 011423 137 EDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLL 216 (486)
Q Consensus 137 ~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlI 216 (486)
+||++++.+|++++|+||+.+.|++|++.+||+++++.+|.+++++|++++||+++.++||||+|||+|||+||||||+|
T Consensus 1 ~ei~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~~~~~~~~~l~~~~~~~~d~~~~~~~~iEN~IG~~~vPlGvAgpl~I 80 (403)
T cd00643 1 EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRNIENVIGYVQVPVGVAGPLLI 80 (403)
T ss_pred ChHHHhhhcCCCCchhccccccChHHHHHHHHHHHHhccccccccCCCCCcCHHHHhccccccceeeEeeceEEecceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----CeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHH
Q 011423 217 D----GFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVF 292 (486)
Q Consensus 217 n----G~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~a 292 (486)
| |++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.||.++++|+++ |+++|+++|
T Consensus 81 nG~~a~~~~~VPmATtEgslVAS~srGak~i~~~GG~~~~v~~~~Mtrap~~~~~~~~~a~~~~~wi~~--~~~~i~~~a 158 (403)
T cd00643 81 NGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTRVLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVA 158 (403)
T ss_pred ecccCCcEEEEEeeechhHHHHHHHHHHHHHHhcCCceEEEcCCcceeccEEEECchhhHHHHHHHHHH--HHHHHHHHH
Confidence 9 7799999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred hhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeecc
Q 011423 293 NRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGR 372 (486)
Q Consensus 293 n~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gR 372 (486)
|++||||||++|++++.|+++||||.|+|||||||||||+++|++|+||+++||++.+++||||||+||||+|+|||+||
T Consensus 159 ~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK~sa~n~~~gR 238 (403)
T cd00643 159 ESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238 (403)
T ss_pred HhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeeeE
Q 011423 373 GKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMME 452 (486)
Q Consensus 373 GksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~e 452 (486)
||+|+||+.||+++++++++++++++++++..|+++||+||| .+|||+|+||+|+||||||||||||++|||+|+|+||
T Consensus 239 Gk~V~Ae~~I~~~v~~~il~~s~~a~~~~~~~K~~igs~mag-~~g~Nah~aNgi~Av~iATGQD~A~v~ess~~lT~~e 317 (403)
T cd00643 239 GKSVVAEATIPREVVKEVLKTTPEALVEVNIAKNLIGSAMAG-SGGFNAHAANIVAAIFIATGQDAAQVVESSNCITTME 317 (403)
T ss_pred ceEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHHHHhhc-cccccccHHHHHHHHHhhcCCcHHHHHHHhccceeEE
Confidence 999999999999999999999999999999899999999999 6669999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEEeCceeeEeeecccccc
Q 011423 453 AINDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 453 ~~~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
..+ ++|||+|||||||+||||||||+|+
T Consensus 318 ~~~-~~~L~~svtlPsL~VGTVGGgT~lp 345 (403)
T cd00643 318 LTA-DGDLYISVTMPSLEVGTVGGGTGLP 345 (403)
T ss_pred EcC-CCeEEEEEEeCCceEEEecCccCCH
Confidence 864 4689999999999999999999984
No 3
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=100.00 E-value=1.1e-113 Score=941.12 Aligned_cols=349 Identities=58% Similarity=0.937 Sum_probs=339.1
Q ss_pred CCCHHHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHHhC--CCCCCCCCCCCChhhhhccccccceEEeeeceee
Q 011423 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTG--RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (486)
Q Consensus 133 ~~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg--~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGV 210 (486)
..+|+||++++.+|+++.|+||+.++|++||+++||++|++.+| .+++++|+++|||+++.++||||+|||+|||+||
T Consensus 458 ~l~~~ei~~~~~~g~~~~~~le~~~~~~~~av~~Rr~~l~~~~~~~~~l~~l~~~~~d~~~v~~~~iEN~IG~~~vPvGV 537 (886)
T TIGR00920 458 ALSDAEVISLVNAKHIPAYKLETVLDNPERGVAIRRQILSKKLPMPDALDVLPYKNYDYSKVMGACCENVIGYMPIPVGV 537 (886)
T ss_pred cCCHHHHHHHHhcCCCCccchhhhccCHHHHHHHHHHHHHhhcCCchhhhcCCcCCcCHHHHHhcccceeeeeeecceee
Confidence 45899999999999999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 011423 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (486)
Q Consensus 211 AGPLlInG~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~ 290 (486)
||||+|||++|+|||||||||||||+|||||+++.+||+++++.+|+|||+|+|+|+++.+|.++++|++++++++.+++
T Consensus 538 AGpL~InG~~y~VPMATtEgsLVAS~nRGaK~i~~~GG~~a~v~~d~MtRapvv~f~~~~~A~~~~~wi~~~e~~~~ik~ 617 (886)
T TIGR00920 538 AGPLLLDGKEYQVPMATTEGCLVASTNRGCRALMLGGGVRSRVLADGMTRGPVVRLPSACRAAEAKAWLEVPENFAVIKD 617 (886)
T ss_pred eccEEECCeEEEEeeeeccchHHHHHhHHHHHHHhcCCeEEEEccCceeeeeeEEeCcHHhHHHHHHHHhChHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeee
Q 011423 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIE 370 (486)
Q Consensus 291 ~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~ 370 (486)
++++++|||||++|++++.|+++|+||.|+|||||||||||+++|++|++|+++||++++++||||||+||||+|+|||+
T Consensus 618 ~~~StsR~g~L~~I~~~i~g~~v~lrf~~~TGDAMG~NMVn~atEa~~~~i~~~~~~~~~~sIsgN~ctDKK~sAiN~i~ 697 (886)
T TIGR00920 618 AFDSTSRFARLKKIHIAMAGRNLYIRFQAKTGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIE 697 (886)
T ss_pred hhhccCcccceeeEEEEeeCCEEEEEEEEEcCchhcchHHHHHHHHHHHHHHHhCCCCeEEEEecccccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeee
Q 011423 371 GRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITM 450 (486)
Q Consensus 371 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~ 450 (486)
||||+|+||++||+++++++++++++++++++..||++||++||++||||+|+||||+||||||||||||++|||+|+|.
T Consensus 698 gRGk~Vvae~~Ip~evv~~ilkts~~alvd~~~~KnliGsa~aGs~gg~Nah~aNgIaAifIATGQD~Ahv~eSs~~~t~ 777 (886)
T TIGR00920 698 GRGKSVVCEATIPAKIVRSVLKTSAEALVDVNINKNLIGSAMAGSIGGFNAHAANIVTAIYIATGQDAAQNVGSSNCMTL 777 (886)
T ss_pred cCCcEEEEEEEECHHHHHHHHcCCHHHHHHHHHhhhhHhhhhccccccccCcHHHHHHHHHhhcCCcHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEec-CCCcEEEEEEeCceeeEeeecccccc
Q 011423 451 MEAIN-DGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 451 ~e~~~-dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
+|... ++++||+|+|||||+||||||||+|+
T Consensus 778 me~~~~~~~~L~~SvtlPsL~VGTVGGGT~L~ 809 (886)
T TIGR00920 778 MEAWGPTGEDLYISCTMPSIEIGTVGGGTVLP 809 (886)
T ss_pred eeeeeccCCeEEEEEEcCCceEEeecCccCCh
Confidence 77653 34689999999999999999999984
No 4
>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP). This model represents archaeal examples of the enzyme hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34) and the catalytic domain of eukaryotic examples, which also contain a hydrophobic N-terminal domain. This enzyme synthesizes mevalonate, a precursor of isopentenyl pyrophosphate (IPP), a building block for the synthesis of cholesterol, isoprenoids, and other molecules. A related hydroxymethylglutaryl-CoA reductase, typified by an example from Pseudomonas mevalonii, is NAD-dependent and catabolic.
Probab=100.00 E-value=1.4e-111 Score=871.58 Aligned_cols=342 Identities=49% Similarity=0.762 Sum_probs=330.6
Q ss_pred CCHHHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecc
Q 011423 134 AQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGP 213 (486)
Q Consensus 134 ~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGP 213 (486)
++|+||++++.+|+++.|+||+.+ +++||+++||++|++.++.++++++.+.+|++++.++||||+||++|||+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~a~~~R~~~l~~~~~~~~~~l~~~~~d~~~~~~~~iEN~IG~~~vPlGvagp 79 (402)
T TIGR00533 1 MENNEILELVLNGKIKLYQLEKKL-GTTRAVEIRRKFIEKLAGLESEHLPNYSIDYERAFGANIENVIGYMQIPLGVAGP 79 (402)
T ss_pred CChHHHHHHHhcCCCCchhhhhhc-CcHHHHHHHHHHHHHhcCCChhhccccCCCHHHHhhcCceeccceeeeceeEecc
Confidence 479999999999999999999977 5899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcC----eEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHH
Q 011423 214 LLLDG----FEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLA 289 (486)
Q Consensus 214 LlInG----~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~ 289 (486)
|+||| ++|+|||||||||||||+|||||+++.+||+++++++|+|+|||+|+|+++.|+.++.+|+++ |+++|+
T Consensus 80 l~InG~~a~~~~~VPmAT~E~slVAS~srGak~i~~~GG~~~~v~~~~M~r~~~~~~~~~~da~~~~~~i~~--~~~~i~ 157 (402)
T TIGR00533 80 LKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAGGGATVRVTKDGMTRAPVVRTPSVVRAGACRIWIDE--NQNAIK 157 (402)
T ss_pred EEEcCcccCceEEEeeeechhhHHHHHhHHHHHHHhcCCeEEEECCCcEEccEEEEeCChhhHHHHHHHHHH--HHHHHH
Confidence 99999 899999999999999999999999999999999999999999999999999999999999986 999999
Q ss_pred HHHhhcCCCcceeeEEE-EecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCC--CCeEEEEecCCCCCccceEE
Q 011423 290 VVFNRSSRFARLQHIQC-SIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFP--DMDVIGISGNFCSDKKPAAV 366 (486)
Q Consensus 290 ~~an~tsR~g~L~~I~~-~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~--~~~vi~IsgN~ctDKK~sA~ 366 (486)
++||+++|||||++|++ .+.|+++|+||.|||||||||||||+++|++|++|++++| ++++++||||||+||||+|+
T Consensus 158 ~~a~~tsr~g~l~~i~~~~~~g~~v~l~f~~~tgDAMG~Nmvn~a~e~v~~~i~~~~~~~~~~~~~I~sN~~tdkk~sa~ 237 (402)
T TIGR00533 158 EAAESTTRHGKLQKIQPICLAGDLLYPRFVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAI 237 (402)
T ss_pred HHHHhhCCCCceeeeEEEeccCCEEEEEEEEEccccccchHHHHHHHHHHHHHHHHcCCCCceEEEEeccCccchhhhhh
Confidence 99999999999999998 6789999999999999999999999999999999999886 55789999999999999999
Q ss_pred eeeeccceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccc
Q 011423 367 NWIEGRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSH 446 (486)
Q Consensus 367 n~I~gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESSh 446 (486)
||++||||+|+||+.||.++++++++++++++++++..||+.||+++|++| ||||+||||+|||||||||||+++||++
T Consensus 238 n~~~gRGk~V~A~~~Ip~~v~~~il~~s~~a~~d~~rak~~~gs~~tg~~g-~N~~iaNgI~Av~lATGqD~A~v~ess~ 316 (402)
T TIGR00533 238 NLIEGRGKSIVAEATIPGDVVNKVLKTTVSALVEVNIAKNLIGSAMAGSMG-FNAHYANIIGAIFLATGQDEAHIVEGSL 316 (402)
T ss_pred cccccCCeEEEEEEEECHHHHHHHHCCCHHHHHhHHHHhhhHHHHHhcCCc-cCCcHHHHHHHHHhhcCCcHHHHHHhcc
Confidence 999999999999999999999999999999999988889999999999997 9999999999999999999999999999
Q ss_pred eeeeeEEecCCCcEEEEEEeCceeeEeeecccccc
Q 011423 447 CITMMEAINDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 447 alT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
|+|+||. .+ ++||+|||||||+||||||||+++
T Consensus 317 ~lt~~e~-~~-~~L~~sitlPsL~VGtVGGgt~l~ 349 (402)
T TIGR00533 317 GITLAEE-VD-GDLYFSVSLPDVPVGTVGGGTVLE 349 (402)
T ss_pred ccceEEE-cC-CEEEEEEEcCCceEEeecCccCCh
Confidence 9999997 44 589999999999999999999984
No 5
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=100.00 E-value=3.6e-102 Score=797.72 Aligned_cols=318 Identities=44% Similarity=0.647 Sum_probs=294.0
Q ss_pred hHhHHHHHHHHHHHhCCC--CCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhHHHHhhh
Q 011423 161 RRAAAIRREALQKMTGRS--LQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNR 238 (486)
Q Consensus 161 ~ra~~~RR~~l~~~tg~s--l~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtEgsLVASanR 238 (486)
+|++++||++|++.++.+ +++++..++|++++.++||||+||+++||+||||||+|||++|+|||||||||||||+||
T Consensus 1 ~ka~~~Rr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lPlGvagpl~InG~~y~VPmATeE~svVAsasr 80 (373)
T PF00368_consen 1 KKAIEERREFLEELTGTSEQLEHLPNYSLDPEEVADQMIENVIGYVQLPLGVAGPLLINGKDYYVPMATEEPSVVASASR 80 (373)
T ss_dssp -CHHHHHHHHHHTTSSCCCHHHHCTTTTS-HHTHHHHHSSSEEEEEEEEEEEEEEEEETTEEEEEEEE-SSTTHHHHHHH
T ss_pred CchHHHHHHHHHhhhCcchhHHhCCccCCCHHHHhccCCceeeeEEEEeeEEEccEEEcCEEEEeeeceechhHHHhhhh
Confidence 478999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEE
Q 011423 239 GCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFC 318 (486)
Q Consensus 239 GaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~ 318 (486)
|||+++.+||+++.+.++.|+|||+|.|+++.|+.++++|+++ |+++|+++||.+||||||++|++++.|+++|+||.
T Consensus 81 Gak~i~~sGG~~t~v~~~~m~rq~~~~f~~~~~a~~~~~~i~~--~~~~l~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~ 158 (373)
T PF00368_consen 81 GAKAINESGGFTTSVLEDGMTRQPVFVFDDVEDAAAFKQWIEE--NFEELKEIANSTSRGGGLRDIEVRIVGRFVHLRFH 158 (373)
T ss_dssp HHHHHHHTTSBEEEEEEEEEEEEEEEE-SSHSHHHHHHHHHHH--THHHHHHHHHHHCCTEEEEEEEEEECSTEEEEEEE
T ss_pred HHHHHhhcCCeEEEEcCCceeeeeEEEeCCHhhHHHHHHHHHH--HHHHHHHhhhhcCCceeeeEEEEEecCCEEEEEEE
Confidence 9999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEecccchHHHHHHHHcCCHHHH
Q 011423 319 CTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLKTNVATL 398 (486)
Q Consensus 319 ~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLkts~~al 398 (486)
|||||||||||||+++|++|+||++++++..+++|+||||+||||++.||++||||+|.||+.||.++++++++++++++
T Consensus 159 ~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK~s~~n~~~grG~~v~A~~~ip~~~l~~~~~~~~~~v 238 (373)
T PF00368_consen 159 YDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKKPSAINWIEGRGKLVTAEATIPVEVLARVLGTTGEQV 238 (373)
T ss_dssp EEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS--HHHHHH--ECEEEEEEEEEHHHHHCSSSSHHHHH
T ss_pred EEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhhhhhhheeccCCEEEEEEEEECHHHHhhhcCCCHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeeeEEecCCCcEEEEEEeCceeeEeeeccc
Q 011423 399 VELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVVLSEVEL 478 (486)
Q Consensus 399 ~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt 478 (486)
++++..+++.|+.++|+.+ ||||+||||+|||||||||||++.|||||++.++...++++||+|+|||||+||||||||
T Consensus 239 ~~i~~a~~~a~~~~~ra~t-~Nkg~~Ngi~Av~lATGqD~raV~~ssha~a~~~~~~~~~~L~~sitlPsL~VGtVGGgt 317 (373)
T PF00368_consen 239 AEINQASNLAGSDPYRAVT-HNKGIMNGIAAVFLATGQDWRAVEESSHAYASMEGQYDGGDLYGSITLPSLPVGTVGGGT 317 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHCTTTSSSTTTEEEEEEEEEEE---SBSCHH
T ss_pred HHHHHHHHHHhhhHhhccc-cCCChHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCceEEEecCCc
Confidence 9999999999999999995 999999999999999999998888888999999988776799999999999999999999
Q ss_pred ccc
Q 011423 479 NLL 481 (486)
Q Consensus 479 ~l~ 481 (486)
+++
T Consensus 318 ~lp 320 (373)
T PF00368_consen 318 GLP 320 (373)
T ss_dssp HHH
T ss_pred cCh
Confidence 984
No 6
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=100.00 E-value=1.1e-99 Score=784.48 Aligned_cols=340 Identities=46% Similarity=0.619 Sum_probs=328.3
Q ss_pred HHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHHhCCCCCCCCCCCCChh---hhhccccccceEEeeeceeeecceE
Q 011423 139 VVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYD---SILGQCCEMPVGYVQIPVGIAGPLL 215 (486)
Q Consensus 139 i~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~---~i~~~~iEN~IG~v~IPvGVAGPLl 215 (486)
+++++.+|++++|++|+..+ .++++++||++|++.++++++++.....|++ +++++||||+||++|+|+||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~f~~-~~~a~~~Rr~~l~~~~~l~~~~~~~~~~d~~~~~~~~~~~iENvIG~~~lPlGia~~l~ 80 (436)
T COG1257 2 VVQKVLAGEIKLSELEKFYK-ANKAVEERRQALERFTGLSLEEIGSLSIDGSLPIDVANRNIENVIGTVQLPLGIAGPLL 80 (436)
T ss_pred hhhhhhcccchhhhhhhhcc-ccccHHHHHHHHHHHhCCChhhhhhhccCcchhHHHHHHhhhhhhceeeeecccccceE
Confidence 68899999999999999884 6789999999999999999999988777776 9999999999999999999999999
Q ss_pred EcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhc
Q 011423 216 LDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRS 295 (486)
Q Consensus 216 InG~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~t 295 (486)
|||++|||||||||||||||+|||||+|+.+||+++++.+|+|||||+|+|.+..++.+++.|++.+++++.++++++++
T Consensus 81 InG~~Y~iPmATtEgalVAs~~rgaK~i~~~GG~~~~~~~~~Mtr~~v~~~~~~~~a~~~~~w~~~~e~~e~~k~~~~s~ 160 (436)
T COG1257 81 INGKEYYIPMATTEGALVASASRGAKLITASGGATARVTEDGMTRQPVFRFVSLPEAAKFAIWVKKKEIIELAKEAAPST 160 (436)
T ss_pred EcCceeEEeeeccchHHHHHHHhHHHHHHhcCCcEEEEeccccccccEEecCchHHHHHHHHHhhhHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred CCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhC-CCCeEEEEecCCCCCccceEEeeeeccce
Q 011423 296 SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDF-PDMDVIGISGNFCSDKKPAAVNWIEGRGK 374 (486)
Q Consensus 296 sR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f-~~~~vi~IsgN~ctDKK~sA~n~I~gRGk 374 (486)
+||+|+++|++.+.|+++|+||.+||||||||||||+++|+++++|+++| ++..+++|||||||||||+|+||++||||
T Consensus 161 ~~~~kl~~i~~~~~g~~l~l~~~~dT~DAMGmNMvn~~~E~v~~~i~~~~~~~~~~~~issN~ctdkk~~a~~~~~grgk 240 (436)
T COG1257 161 GRGGKLIHIEPFVEGNLLYLRFYVDTGDAMGMNMVNIATEAVAPFIEEETFGGAVLLAISSNLCTDKKPAAINSIEGRGK 240 (436)
T ss_pred CCcceeeeeeeeccCcEEEEEEEEecchhhhhHHHHHHHHHHHHHHHHhccCCceEEEEecccccccchhheEEEEeccc
Confidence 99999999999999999999999999999999999999999999999996 78888999999999999999999999999
Q ss_pred EEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeeeeEEe
Q 011423 375 SVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAI 454 (486)
Q Consensus 375 sVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~~e~~ 454 (486)
+|++|..+|+|+|++|+++|+++++|+|..||+.||+|+|+.| ||+|.+|.+.|+|+|||||.||++|+|.|+|+++..
T Consensus 241 ~v~ae~~~~~evv~~il~at~~a~~d~~rakt~~ggamnG~~g-fna~~aN~~~Ai~~a~gqdaA~~~e~s~~~t~~~~~ 319 (436)
T COG1257 241 TVVAEATIPEEVVKKILKATPEAIVDVNRAKTLNGGAMNGIDG-FNAHTANDVRAIEAATGQDAAQVGEYSPLITWMEDQ 319 (436)
T ss_pred eeeccccchHHHHHHHHhcCHHHHhhHHHHHhhhhhhhhhHHH-HHHHHhhHHHHHHHHhCccHHhhcccCCceEEEEec
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999998865
Q ss_pred cCCCcEEEEEEeCceeeEeeecccccc
Q 011423 455 NDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 455 ~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
++ +|||+|+||||++|||+||||.++
T Consensus 320 ~~-~~L~~svtlP~~~vgt~Gggt~lp 345 (436)
T COG1257 320 RD-GDLYGSVTLPSLVVGTGGGGTVLP 345 (436)
T ss_pred CC-CcEEEEEEeccceeEeecCCCcCh
Confidence 54 699999999999999999999876
No 7
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative. Most known examples of hydroxymethylglutaryl-CoA reductase are NADP-dependent (EC 1.1.1.34) from eukaryotes and archaea, involved in the biosynthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA. This model, in contrast, is built from the two examples in completed genomes of sequences closely related to the degradative, NAD-dependent hydroxymethylglutaryl-CoA reductase of Pseudomonas mevalonii, a bacterium that can use mevalonate as its sole carbon source.
Probab=100.00 E-value=7.9e-91 Score=716.66 Aligned_cols=312 Identities=20% Similarity=0.212 Sum_probs=280.3
Q ss_pred HcCCCCcccccccCCChhH-hHHHHHHHHHHHhCCC---CCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCe
Q 011423 144 IDGSIPSYALESKLGDCRR-AAAIRREALQKMTGRS---LQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGF 219 (486)
Q Consensus 144 ~~g~~~~~~les~l~d~~r-a~~~RR~~l~~~tg~s---l~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ 219 (486)
.+|++++|++|. +.+|++ ++++||++|++.++++ ++.++.+.+|++...++||||+||+++||+||||||+|||+
T Consensus 3 ~~~~~~~~~~~~-~~~f~~~s~~eR~~~l~~~~~l~~~~~~~l~~~~l~~~~a~~~~iEN~Ig~~~vPlGvAg~l~InG~ 81 (393)
T TIGR00532 3 KEGKIRFAELSK-IFGFYHKSVEEKLKEIAEFAELSDEEVKAFFSNGANEDFAFDRMIENVIGTFEFPIGIAKNFKIDGK 81 (393)
T ss_pred cccccchhhhcc-ccChhhcCHHHHHHHHHHhcCCCHHHHHHHhhCCCCHHHHhccCcccccceeeeceeEeccEEECCe
Confidence 469999999977 558666 9999999999999954 55677778898766699999999999999999999999999
Q ss_pred EEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeece-EEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC--
Q 011423 220 EYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAP-IVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-- 296 (486)
Q Consensus 220 ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRap-v~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~ts-- 296 (486)
+|+|||||||||||||+|||||+++.+||+++.+.+++|+||+ ++.+++..++. ..|++ ++++|++.+|+++
T Consensus 82 ~y~VPMATeE~svVAs~srGak~~~~~GG~~~~v~~~~M~gqi~~~~~~~~~~a~--~~~~~---~~~~i~~~a~~~~~~ 156 (393)
T TIGR00532 82 DYLIPIAIEEPSVVAAANFAAKIAEEADGFTSDGEGLGIIGQIQQIKIKNEKAAK--FEFLD---LGDEIIERAEECDPM 156 (393)
T ss_pred EEEEEeeeccccHHHHHHHHHHHHHhcCCeEEEEcCCceEEEEEEEecCCHHHHH--HHHHH---HHHHHHHHHHHhCHH
Confidence 9999999999999999999999999999999999999999877 66677654433 44454 8999999999986
Q ss_pred ---CCcceeeEEEE----ecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeee
Q 011423 297 ---RFARLQHIQCS----IAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWI 369 (486)
Q Consensus 297 ---R~g~L~~I~~~----i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I 369 (486)
|||++++|+++ +.|+++|+||.|||||||||||||+++|++|++|++++|+..+++|+||||+|||+
T Consensus 157 ~~~rggg~~~i~~r~~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~Eav~~~i~~~~~~~~~~~IlsN~~~dk~~------ 230 (393)
T TIGR00532 157 LNNLGGGCKDIEARVIDIIEGGILILHIIVDTCDAMGANALNSIAEKVAEFIELEFGGECVLKIISNDAAEFTA------ 230 (393)
T ss_pred HHhhcCCeEEEEEEeeecccCCEEEEEEEEecccccccHHHHHHHHHHHHHHHHhCCCceEEEEecCccccceE------
Confidence 99999999986 56899999999999999999999999999999999999887779999999999977
Q ss_pred eccceEEEecccchHH----HHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCcccccccc
Q 011423 370 EGRGKSVVCEATIKEE----VVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESS 445 (486)
Q Consensus 370 ~gRGksVvaea~i~~e----Vv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESS 445 (486)
++|||.++++..++.+ +++|++++++++.+ |+||++| ||||+||||+|||||||||||++.||+
T Consensus 231 ~arg~~~~a~~~i~~~~~~~v~~ki~~~s~~a~~--d~~ra~t----------~Nkgi~NgI~Av~lATGqD~raVea~~ 298 (393)
T TIGR00532 231 KARAKADFDHDLIGGEDSWNLAEGIELASAFAAA--DEERAAT----------HNKGIMNGISALCIATFNDFRAIEAGA 298 (393)
T ss_pred EEEEEEEhheeecCchhhHHHHHHHHHHHHHhhc--ChHhhhc----------ccchHHHHHHHHHhhcCCcHHHHHHhh
Confidence 6789999999999877 89999999996554 6999888 999999999999999999997777777
Q ss_pred c----------eeeeeEEecCCCcEEEEEEeCceeeEeeecccccc
Q 011423 446 H----------CITMMEAINDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 446 h----------alT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
| |||+||.++| ++||+|+||| |+||||||||+++
T Consensus 299 hayAa~~G~Y~~lt~~e~~~~-g~L~gsitlP-L~VGtVGGgt~l~ 342 (393)
T TIGR00532 299 HKFAAIGGKYFPLSKFEVDRD-GALVGEIEIP-LAVGTIGGAIKFN 342 (393)
T ss_pred hHHHHhcCCcccceEEEEcCC-CEEEEEEEEc-ceEEEecCccccC
Confidence 7 6999998544 6899999999 9999999999997
No 8
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class II, prokaryotic enzyme is a homodimer. Class II enzymes are found primarily in prokaryotes and Archaeoglobus fulgidus and are soluble as they lack the membrane region. Enzymes catalyze the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. Human and bacterial HMGR differ in their active site architecture.
Probab=100.00 E-value=2.6e-89 Score=709.71 Aligned_cols=301 Identities=21% Similarity=0.250 Sum_probs=267.9
Q ss_pred ChhH-hHHHHHHHHHHH---hCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccchhHHH
Q 011423 159 DCRR-AAAIRREALQKM---TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVA 234 (486)
Q Consensus 159 d~~r-a~~~RR~~l~~~---tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtEgsLVA 234 (486)
+|++ ++++||++|++. ++..++.++.++.|+++++++||||+||+++||+||||||+|||++|+||||||||||||
T Consensus 2 ~fy~~s~~eR~~~l~~~~~lt~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~vP~Gvag~l~InG~~y~VPMATeE~svVA 81 (417)
T cd00644 2 GFYKLSPEERLQILAEFAGLSEEDVQLLKSGGALPLELADQMIENVIGTFSLPLGVATNFLVNGKDYLVPMATEEPSVVA 81 (417)
T ss_pred CccccCHHHHHHHHHHhcCCCHHHHHHHhccCCChHHHHhcCcccccceeecceeEeccEEECCeEEEEeeeeccchHHH
Confidence 4556 999999999997 445566777788999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC-----CCcceeeEEEEec
Q 011423 235 STNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQHIQCSIA 309 (486)
Q Consensus 235 SanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~ts-----R~g~L~~I~~~i~ 309 (486)
|+|||||+++.+||+++.+.+++|+|||+| .++.|+.++.+|+++ ++++|+++||+++ |||||++|++++.
T Consensus 82 s~srGak~i~~~GG~~~~~~~~~m~~q~~~--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~ps~~~rgggl~~i~~~~~ 157 (417)
T cd00644 82 AASNAAKIARKSGGFKTSSSDRLMIGQIQL--VDVSDPAKARAFILA--HKDEILEIANEAHPSLVKRGGGARDIEVRVL 157 (417)
T ss_pred HHhHHHHHHHhcCCEEEEECCCceEeccEE--CcccCHHHHHHHHHH--hHHHHHHHHHhhChhHHhcCCceeEEEEEec
Confidence 999999999999999999999999999986 667899999999996 8999999999984 9999999999999
Q ss_pred C----CeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEecccchHH
Q 011423 310 G----KNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEE 385 (486)
Q Consensus 310 G----~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~e 385 (486)
| +++|+||.|||||||||||||+++|++|++|+++||+..+++|+||||+||+++|.+.|+.+-..- ....+++
T Consensus 158 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~l~~~~~~~~~~~IlsN~~tdk~v~A~~~ip~~~l~~--~~~~g~~ 235 (417)
T cd00644 158 DADLGDFLSVHLLVDTKDAMGANIVNTMLEAVAPLLEEITGGEVLLRILSNYATERLVRAKVSIPVEALGT--KGGSGEE 235 (417)
T ss_pred CCCCCCeEEEEEEEEccchhcchhHHHHHHHHHHHHHHhCCcceeEEEeccCCCCceEEEEEEEcHHHhhh--cccchhH
Confidence 8 999999999999999999999999999999999999888899999999999999877544321100 0112458
Q ss_pred HHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCcccccccc-c----------eeeeeEEe
Q 011423 386 VVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESS-H----------CITMMEAI 454 (486)
Q Consensus 386 Vv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESS-h----------alT~~e~~ 454 (486)
++++|++++.. +++|+||+.| ||||+||||+|||||||||| |+|||+ | |||+||..
T Consensus 236 va~~i~~~~~~--a~~d~~rA~t----------~Nkgi~NgI~Av~lATGqD~-raVea~ahayA~~~g~y~~lt~~~~~ 302 (417)
T cd00644 236 VAKKIALASAF--AQVDPYRAAT----------HNKGIMNGIDAVVLATGNDW-RAVEAGAHAYAARSGQYRSLSTWEID 302 (417)
T ss_pred HHHHHHHHHHH--HhhhHHHhhh----------ccccHHHHHHHHHhhCCCcH-HHHHhhhhhhhhhcCCcccceEEEEc
Confidence 88888888885 4467888766 99999999999999999999 568886 7 79999985
Q ss_pred cCCCcEEEEEEeCceeeEeeecccccc
Q 011423 455 NDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 455 ~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
+++||+|+||| |+||||||||++|
T Consensus 303 --~~~L~~sitlP-l~VGtVGGgt~l~ 326 (417)
T cd00644 303 --DGKLVGELELP-LAVGTVGGSTKVH 326 (417)
T ss_pred --CCEEEEEEEEe-eeeEeecCccCcC
Confidence 36899999999 9999999999974
No 9
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=100.00 E-value=8.1e-87 Score=684.03 Aligned_cols=309 Identities=20% Similarity=0.203 Sum_probs=281.1
Q ss_pred ccccccCCChhHhHHHHHHHHHHHhCCCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccch
Q 011423 151 YALESKLGDCRRAAAIRREALQKMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEG 230 (486)
Q Consensus 151 ~~les~l~d~~ra~~~RR~~l~~~tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtEg 230 (486)
|.+|+.. +.+|+++.|++++. .++.+++.++...+|++.. ++||||+||+++||+||||||+|||++|+||||||||
T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~-lt~~~~~~l~~~~l~~~~~-~~~iEN~IG~~~vPlGva~~l~InG~~y~VPmATeE~ 77 (376)
T cd00365 1 PAFRTLS-PHAARLDHIGQLLG-LSHDDVQLLANAALPMDIA-NGMIENVIGTFELPYAVASNFQIDGRDVLVPLVTEEP 77 (376)
T ss_pred Cchhhhc-CHHHHHHHHHHHhc-cChHHHhhccccCCCHHHH-hcccccccceeeeeeEEecCEEEcCcEEEEEeEecch
Confidence 4556655 68999999999985 5788888999888999766 9999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCC-----cceeeEE
Q 011423 231 CLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRF-----ARLQHIQ 305 (486)
Q Consensus 231 sLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~tsR~-----g~L~~I~ 305 (486)
|||||+|||||+++.+||+++++.++.|+|||+|.|.+ |+.++++|+++ +|+++|+++||+++++ |||++|+
T Consensus 78 svVAs~srgak~i~~~GG~~~~~~~~~m~~q~~~~~~~--d~~~~~~~i~~-~~~~~i~~~a~~~~~~~~~rgggl~~i~ 154 (376)
T cd00365 78 SIVAAASYMAKLARAGGGFTTSSSAPLMHAQVQIVLIQ--DPLNAKLSLLR-SGKDEIIELANRKDQLLNSLGGGCRDIE 154 (376)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEECCCcEEeeeEEEeCC--CHHHHHHHHHh-hhHHHHHHHHhhhCcchhccCccceEEE
Confidence 99999999999999999999999999999999999987 89999999984 3999999999999777 9999999
Q ss_pred EEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEecccchHH
Q 011423 306 CSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEE 385 (486)
Q Consensus 306 ~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~e 385 (486)
+++.|+++++||.|||||||||||||+++|++|++|++.+++.++..+++|+|+ +|||.|+||+.||.+
T Consensus 155 ~~~~~~~v~l~~~~dtgDAMGaNmvn~~~eav~~~i~~~~~~~~~~~~si~~n~-----------~~g~~v~A~~~I~~~ 223 (376)
T cd00365 155 VHTFGPMLVAHLIVDVGDAMGANMINTMAEAVAPLMEAYTGGMQVRLRSLSNLT-----------GDGRLARAQARITPQ 223 (376)
T ss_pred EEeeCCEEEEEEEEEccchhhchhHHHHHHHHHHHHHHHcCCCceEEEEEeccc-----------CCCcEEEEEEEEcHH
Confidence 999999999999999999999999999999999999998887654445555555 899999999999999
Q ss_pred HHHHHH---cCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCcccc-ccccc-------eeeeeEEe
Q 011423 386 VVTKVL---KTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQN-VESSH-------CITMMEAI 454 (486)
Q Consensus 386 Vv~kiL---kts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~-VESSh-------alT~~e~~ 454 (486)
++++.+ +++++.+++++..||..|+.+|| +||||+||||+|||||||||||++ +|++. |+|+||..
T Consensus 224 ~l~~~~~~g~~~a~~i~~~~~~~a~~d~~rA~---t~Nkgi~NgI~Av~iATGqD~raVea~~h~yA~~~Y~~lt~~e~~ 300 (376)
T cd00365 224 QLETAEFSGEAVIEGILDAYAFKAAVDSYRAA---THNKGIMNGVDPLIVACGQDWRAVEVGAHAYACRHYGSLTTWEKD 300 (376)
T ss_pred HHhhhccccccHHHHHHHHHHHHHhhhhHhhc---cccccHHHHHHHHHhhcCCcHHHHHHHHHHHhhccCCcceEEEEc
Confidence 999999 99999999999889999999999 599999999999999999999554 56667 89999985
Q ss_pred cCCCcEEEEEEeCceeeEeeecccccc
Q 011423 455 NDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 455 ~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
++ ++||+|+||| |+||||||||++|
T Consensus 301 ~~-~~L~~sitlp-l~VGtVGGgt~~l 325 (376)
T cd00365 301 NN-GHLVITLEMS-MPVGLVGGATKTH 325 (376)
T ss_pred CC-CeEEEEEEEe-EEEEeecCcccCC
Confidence 44 5899999997 9999999999954
No 10
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]
Probab=93.39 E-value=0.021 Score=61.36 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=27.1
Q ss_pred cchhhhhhHHHHHHHhCCCcccccccc-cee
Q 011423 419 FNAHAANIVSAIFIATGQDPAQNVESS-HCI 448 (486)
Q Consensus 419 ~NkhiaNgIaAvfIATGQD~Ar~VESS-hal 448 (486)
||+++|||++|+.+|||||| +++|++ |..
T Consensus 273 ~~ggamnG~~gfna~~aN~~-~Ai~~a~gqd 302 (436)
T COG1257 273 LNGGAMNGIDGFNAHTANDV-RAIEAATGQD 302 (436)
T ss_pred hhhhhhhhHHHHHHHHhhHH-HHHHHHhCcc
Confidence 79999999999999999999 999998 763
No 11
>PF14150 YesK: YesK-like protein
Probab=71.94 E-value=4.2 Score=34.90 Aligned_cols=57 Identities=21% Similarity=0.475 Sum_probs=36.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhHhhhccCCCccccc-hhHHHHHHHHHHHHHHHHhhcCcc
Q 011423 35 LYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVT-LSEIAAIVSLIASFIYLLGFFGID 95 (486)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (486)
+|+.-++++.+.|+++|++=+||++|- |--.++ ..=+..+..++-|.++.=|+.|++
T Consensus 1 f~llg~~~~ii~f~~S~~lr~r~p~k~----~~~il~~ililis~~~v~~S~f~vGGweGmg 58 (81)
T PF14150_consen 1 FYLLGIVTFIIVFGVSVLLRKRFPKKQ----PEIILPLILILISLLTVLISIFLVGGWEGMG 58 (81)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHHHHHHHHHHheEcchhhhh
Confidence 367778899999999999999999984 444443 222233334444444545555544
No 12
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=64.87 E-value=24 Score=35.79 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeE-EEEe
Q 011423 283 NNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGIS 354 (486)
Q Consensus 283 ~n~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~v-i~Is 354 (486)
+..+++++..++....-++.+++.+..|+..++.+.+...+.|-..=.....+++-+.|++++|+.++ +-+.
T Consensus 213 ~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihve 285 (299)
T PRK09509 213 EERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQD 285 (299)
T ss_pred HHHHHHHHHHHhCCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 34567777777776666778999999999988888888877665444455677788888888887765 4444
No 13
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=55.92 E-value=13 Score=29.24 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHH
Q 011423 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (486)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (486)
=|||-...-.++.+.+|++.|+++.
T Consensus 18 nplP~ww~~~f~~tivfa~~Y~~~y 42 (51)
T PF14715_consen 18 NPLPRWWLWLFYGTIVFAVGYLVLY 42 (51)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999874
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=54.41 E-value=84 Score=30.68 Aligned_cols=67 Identities=6% Similarity=0.156 Sum_probs=48.5
Q ss_pred CCHHHHHHHHhhcCCCcceeeEEEEecCC-eEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCe
Q 011423 283 NNFETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349 (486)
Q Consensus 283 ~n~~~L~~~an~tsR~g~L~~I~~~i~G~-~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~ 349 (486)
+..+++++..++....-++.+++.+..|+ .+++.+.+...+.|-..-..+.++.+-+.+++++|+.+
T Consensus 192 ~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~ 259 (268)
T TIGR01297 192 EDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIE 259 (268)
T ss_pred ccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCC
Confidence 45677777777555556778899999998 88888888887766554456667777777766677753
No 15
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=51.64 E-value=21 Score=29.44 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=22.5
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHhHhhhc
Q 011423 33 LPLYLTNAIFFTLFFSVAYYLLHRWREKIR 62 (486)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (486)
.|+.+.=.+-..+=+..+|++++|||++.-
T Consensus 30 ~p~~~~~l~A~vis~~lS~~ll~~~R~~~~ 59 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVLLRRLRDRAS 59 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666656666667789999999999863
No 16
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=49.71 E-value=73 Score=32.94 Aligned_cols=80 Identities=11% Similarity=0.272 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCc
Q 011423 282 PNNFETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDK 361 (486)
Q Consensus 282 p~n~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDK 361 (486)
|+..+++++...+....-++.+++.+..|+..++++.....+.|--==.-..++++-+.|++.+|...-+.|.-+=+.++
T Consensus 214 ~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~ 293 (304)
T COG0053 214 PEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEK 293 (304)
T ss_pred HHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 44567777777777777788999999999999999999999888776667777788888888888544455544444443
No 17
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=41.55 E-value=21 Score=31.61 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=21.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhHhh
Q 011423 34 PLYLTNAIFFTLFFSVAYYLLHRWREK 60 (486)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (486)
+-.++..+.|.++|.+.|||+.|=..|
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrK 32 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRK 32 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 456788899999999999998765443
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=41.30 E-value=1.1e+02 Score=30.00 Aligned_cols=65 Identities=9% Similarity=0.215 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCC-eEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCe
Q 011423 285 FETLAVVFNRSSRFARLQHIQCSIAGK-NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMD 349 (486)
Q Consensus 285 ~~~L~~~an~tsR~g~L~~I~~~i~G~-~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~ 349 (486)
.+++++..++....-++.+++++..|+ .+++.+.+..-..|-.-=.....+++.+.+++++++..
T Consensus 207 ~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~ 272 (284)
T PF01545_consen 207 VEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIY 272 (284)
T ss_dssp HHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred hhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcE
Confidence 467777777777778999999999998 89999988877777555555678888889988898876
No 19
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=35.53 E-value=63 Score=30.07 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=40.0
Q ss_pred CChhcHHHHHHHhcCCCCHHHHHHHHhhc-CCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 011423 267 ASAMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (486)
Q Consensus 267 ~~~~dA~~~~~wi~~p~n~~~L~~~an~t-sR~g~L~~I~~~i----------------~G~~v~lrf~~dTgDAMG~N 328 (486)
....+..+.++|+++ |.++|.++|++. ...|.-.++++.+ +|.+=.+| +.-|++-|.|
T Consensus 38 ~~~~~~~ea~~~i~~--~~~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlr--I~IG~g~G~N 112 (130)
T PF09551_consen 38 SQAKSKEEAREVIRE--NLPEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALR--ITIGEGKGHN 112 (130)
T ss_pred ccCCCHHHHHHHHHH--hHHHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEE--EEecCccCcc
Confidence 345677888999987 999999999986 3334334444433 35555555 4568888988
No 20
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=33.94 E-value=94 Score=29.68 Aligned_cols=58 Identities=28% Similarity=0.594 Sum_probs=35.8
Q ss_pred CCCCCccchhhhhhh------hHH-------HHHHHHHHHHHHHhHhhhccCCCccccchhHHHHHHH-HHHHHHHHHhh
Q 011423 26 KASDALPLPLYLTNA------IFF-------TLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVS-LIASFIYLLGF 91 (486)
Q Consensus 26 ~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 91 (486)
...+...+|.+++|= +|. ..+|.+.|||+.+ |.+ |+-..+. ++..+.|.+|+
T Consensus 46 ~~~~~~~IP~~Vs~RM~rRm~~~~GiP~~lG~~~f~~~y~l~~~-----------~~~---dvP~~~~~~~S~~~Fg~gl 111 (153)
T PF11947_consen 46 RDEDDSAIPEVVSNRMLRRMAVFVGIPTALGVAVFVVFYYLKSR-----------QIV---DVPPWAVLLVSLVFFGLGL 111 (153)
T ss_pred ccccccccCHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhc-----------ccc---ccCchHHHHHHHHHHHHHH
Confidence 356777888899883 222 2366777887764 122 2323333 34445688999
Q ss_pred cCcccc
Q 011423 92 FGIDFV 97 (486)
Q Consensus 92 ~~~~~~ 97 (486)
.||.|-
T Consensus 112 lGisYG 117 (153)
T PF11947_consen 112 LGISYG 117 (153)
T ss_pred Hhhhhh
Confidence 999984
No 21
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=33.70 E-value=65 Score=31.27 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=36.8
Q ss_pred hhcHHHHHHHhcCCCCHHHHHHHHhhc-CCCcceeeEEEEe----------------cCCeEEEEEEeeccccccch
Q 011423 269 AMRASELKFFLEDPNNFETLAVVFNRS-SRFARLQHIQCSI----------------AGKNLYIRFCCTTGDAMGMN 328 (486)
Q Consensus 269 ~~dA~~~~~wi~~p~n~~~L~~~an~t-sR~g~L~~I~~~i----------------~G~~v~lrf~~dTgDAMG~N 328 (486)
..+..+.++|+++ |.++|+++|+++ .+-|.=.++++.+ +|.+=-+| +.-|++-|.|
T Consensus 75 ~~s~~ea~~~i~~--~l~~Ie~~a~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlr--I~IG~g~G~N 147 (168)
T TIGR02837 75 LKSLEEARRVIRE--NLPEIERIAESVIKAEGADYKVRVELGKYSFPTKLYGNIVLPAGEYEALR--ILIGEGAGAN 147 (168)
T ss_pred CCCHHHHHHHHHH--hhHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCCcccCCEeccCCceEEEE--EEecCcCCcc
Confidence 3455677888886 899999999886 3333334444433 35555555 5678888998
No 22
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=31.64 E-value=41 Score=34.18 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.9
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHH
Q 011423 31 LPLPLYLTNAIFFTLFFSVAYYLLH 55 (486)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (486)
=|||-+..-.++.|+.|+++|+++.
T Consensus 24 n~~P~ww~~~f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 24 NPLPRWWLWTFYATIVWGFGYLVAY 48 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999998875
No 23
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.73 E-value=1.2e+02 Score=25.98 Aligned_cols=58 Identities=29% Similarity=0.555 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHhhCCCCeEE--EEecCCCCCccceEEeeeeccceEEEecccchHHHHHHHHc
Q 011423 328 NMVSKGVQNVLDFLQNDFPDMDVI--GISGNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLK 392 (486)
Q Consensus 328 NMVn~~~E~v~~~I~~~f~~~~vi--~IsgN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLk 392 (486)
|+. ++++.+.+.|++ .|+.+++ .=+ ++|...+-..-..+. |+.|.|+. +++.+++|.+
T Consensus 11 Nl~-~g~~~~~~~Le~-~p~~~Vie~gCl-~~Cg~C~~~pFAlVn--G~~V~A~t--~eeL~~kI~~ 70 (78)
T PF07293_consen 11 NLA-SGTDQVYEKLEK-DPDIDVIEYGCL-SYCGPCAKKPFALVN--GEIVAAET--AEELLEKIKE 70 (78)
T ss_pred Cch-hhhHHHHHHHhc-CCCccEEEcChh-hhCcCCCCCccEEEC--CEEEecCC--HHHHHHHHHH
Confidence 555 478889999987 6998874 333 456665555555555 55775554 8999988854
No 24
>PRK13669 hypothetical protein; Provisional
Probab=30.40 E-value=1.4e+02 Score=25.62 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEe-cCCCCCccceEEeeeeccceEEEecccchHHHHHHHHc
Q 011423 332 KGVQNVLDFLQNDFPDMDVIGIS-GNFCSDKKPAAVNWIEGRGKSVVCEATIKEEVVTKVLK 392 (486)
Q Consensus 332 ~~~E~v~~~I~~~f~~~~vi~Is-gN~ctDKK~sA~n~I~gRGksVvaea~i~~eVv~kiLk 392 (486)
++++.+.+.+++ .|+.+++-.- -+||.-.+-+.-..+.|| .|.++ -+++.+++|.+
T Consensus 14 ~G~~~~~~~Le~-dP~~dVie~gCls~CG~C~~~~FAlVng~--~V~a~--t~eeL~~kI~~ 70 (78)
T PRK13669 14 SGSQAAFEKLEK-DPNLDVLEYGCLGYCGICSEGLFALVNGE--VVEGE--TPEELVENIYA 70 (78)
T ss_pred hhHHHHHHHHHh-CCCceEEEcchhhhCcCcccCceEEECCe--EeecC--CHHHHHHHHHH
Confidence 456777777765 8999974332 246666555555555555 77444 48999999864
No 25
>PRK14645 hypothetical protein; Provisional
Probab=30.40 E-value=2.8e+02 Score=26.23 Aligned_cols=94 Identities=7% Similarity=-0.037 Sum_probs=61.6
Q ss_pred CCHHHHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeecc--ccccchhhHHHHHHHHHHHHhh--CCCCeEEEEecC
Q 011423 283 NNFETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTG--DAMGMNMVSKGVQNVLDFLQND--FPDMDVIGISGN 356 (486)
Q Consensus 283 ~n~~~L~~~an~t--sR~g~L~~I~~~i~G~~v~lrf~~dTg--DAMG~NMVn~~~E~v~~~I~~~--f~~~~vi~IsgN 356 (486)
++.++|.+..+.. ..+-.|.+|+..-.|+.-+||+.+|.. +.++..-.....+++.++|... +++.-.+=+||=
T Consensus 6 ~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 85 (154)
T PRK14645 6 ENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVESP 85 (154)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence 3566677766664 567888899988778888899999973 3477666666777776666432 223223666666
Q ss_pred CCCCccceEEeeeeccceEE
Q 011423 357 FCSDKKPAAVNWIEGRGKSV 376 (486)
Q Consensus 357 ~ctDKK~sA~n~I~gRGksV 376 (486)
=-....-+...|..-.|+.|
T Consensus 86 GldRpL~~~~df~r~~G~~v 105 (154)
T PRK14645 86 GPKRPLFTARHFERFAGLKA 105 (154)
T ss_pred CCCCCCCCHHHHHHhCCCEE
Confidence 66666555555555555555
No 26
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=29.52 E-value=99 Score=29.51 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHhHhhhccCCCccccchhHHHHHHHHHHHHHHHHhhcCcccccc
Q 011423 40 AIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (486)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (486)
.-+++.++-.+|+.+|.++ +-| ...++..+.++.++-++++||+.++..
T Consensus 163 ~sli~Wl~y~~~lh~r~~~-~~~----------gr~~a~~~i~gf~~~~~~~~gv~~~~~ 211 (214)
T PF01578_consen 163 WSLITWLVYGAYLHLRSWK-GWR----------GRRAAYLSIIGFLLLLLSYFGVNLLLE 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHhh-chh----------hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555556666666554 444 235678888888999999999998764
No 27
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=28.70 E-value=1.8e+02 Score=26.41 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHhHhhhccCCCccccchhHH---HHHHHHHHHHHHHHh
Q 011423 39 NAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEI---AAIVSLIASFIYLLG 90 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 90 (486)
+-+.+.+.+...|+.+++-|||..+. ..++.+- .-.++++|++++.+.
T Consensus 34 ~~~~~~~~~~~i~~~i~~~R~~~~~g----~isf~~a~~~g~~~~~ia~li~~v~ 84 (163)
T PF13858_consen 34 GILSMVITIIFIYFAIRRYRKKYNGG----FISFGQAFKVGFLISLIAGLISAVF 84 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC----CeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677777899999999987655 5677773 445666677666543
No 28
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=28.35 E-value=2.1e+02 Score=29.31 Aligned_cols=95 Identities=16% Similarity=0.312 Sum_probs=49.9
Q ss_pred hcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEEE------e--c--CCeEEEEEEeeccccccchhhHHHHHHHHH
Q 011423 270 MRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQCS------I--A--GKNLYIRFCCTTGDAMGMNMVSKGVQNVLD 339 (486)
Q Consensus 270 ~dA~~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~~------i--~--G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~ 339 (486)
+|-..+.+|-+. ..++|++......|||.+..|.-. + . +..|.|||+=+.- -+-..+|. .+.
T Consensus 98 eDeefL~~yR~q--Rm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~--~~C~~mn~----~L~ 169 (265)
T PF02114_consen 98 EDEEFLEQYREQ--RMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGF--PRCEIMNS----CLE 169 (265)
T ss_dssp --HHHHHHHHHH--HHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTS--CCHHHHHH----HHH
T ss_pred ccHHHHHHHHHH--HHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCC--chHHHHHH----HHH
Confidence 344556777654 556676666666899999988641 1 1 3457777654443 33444444 444
Q ss_pred HHHhhCCCCeEEEEec-------CCCCCccceEEeeeecc
Q 011423 340 FLQNDFPDMDVIGISG-------NFCSDKKPAAVNWIEGR 372 (486)
Q Consensus 340 ~I~~~f~~~~vi~Isg-------N~ctDKK~sA~n~I~gR 372 (486)
.|...||..+.+.|.+ ||...-.|+-..|..|.
T Consensus 170 ~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~ 209 (265)
T PF02114_consen 170 CLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGD 209 (265)
T ss_dssp HHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTE
T ss_pred HHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCE
Confidence 5555689888877654 67778899999888653
No 29
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=27.06 E-value=63 Score=22.94 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=16.5
Q ss_pred CCCCCCccchhhhhhhhHHHHHHHHHHHHHHH
Q 011423 25 PKASDALPLPLYLTNAIFFTLFFSVAYYLLHR 56 (486)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (486)
+|-||.-|+=+| .++|-....||++|
T Consensus 2 PkT~D~a~i~ly------~~l~~~s~~~Li~k 27 (29)
T TIGR03063 2 PKTGDSAQIGLY------AVLFLGSGLFLIRK 27 (29)
T ss_pred CCCccchhHHHH------HHHHHHHHHHHhhc
Confidence 467787776444 45666666777755
No 30
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=26.90 E-value=60 Score=25.75 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=25.6
Q ss_pred hhhhhhhhccCCeEEEEcc-ceeeeceEEEeCChhcHHHHHHHhcCC
Q 011423 237 NRGCKAIYASGGAASMLLR-DGMTRAPIVRFASAMRASELKFFLEDP 282 (486)
Q Consensus 237 nRGaKai~~sGG~~t~v~~-d~MtRapv~~f~~~~dA~~~~~wi~~p 282 (486)
..|.|++...+.. .++.+ ..-.+-.++.|+|.+ .++.|.++|
T Consensus 17 ~~GG~~l~~~~~~-~~leG~~~~~~~viieFPs~~---aa~~~~~sp 59 (65)
T PF07045_consen 17 KYGGRVLARGGEP-EVLEGDWDPDRVVIIEFPSME---AAKAWYNSP 59 (65)
T ss_dssp HTT-EEEEECEEE-EEEEST-SSSEEEEEEESSHH---HHHHHHCSH
T ss_pred HcCCEEEEECCce-eEEecCCCCCeEEEEECCCHH---HHHHHHCCH
Confidence 3577766654433 34444 455677899999843 357888875
No 31
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=26.78 E-value=1.2e+02 Score=33.57 Aligned_cols=43 Identities=14% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhHhhhccCCCcc--ccchhHHHHHHHHHHHHHHH
Q 011423 46 FFSVAYYLLHRWREKIRNSTPLH--VVTLSEIAAIVSLIASFIYL 88 (486)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 88 (486)
+|.+.|.+.|=|-|-+|...... -++.+.+.+++.++..++|+
T Consensus 228 lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~ 272 (460)
T PRK13108 228 FYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYI 272 (460)
T ss_pred HHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHH
Confidence 34566777788889999876322 37888888888888877665
No 32
>COG5548 Small integral membrane protein [Function unknown]
Probab=26.47 E-value=93 Score=27.88 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=34.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHhhhccCCCccccchhHHHHHHHHHHHHHHHHhhcCcccccc
Q 011423 36 YLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLHVVTLSEIAAIVSLIASFIYLLGFFGIDFVQS 99 (486)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (486)
.|-.++||.+-|.++-||++|=|+. --+.++.+|. -||+||++-|+-|
T Consensus 30 SL~sG~~~G~~~~~A~yL~~~g~~~---------------Gl~~A~~~s~-~Ll~~~~~R~~~s 77 (105)
T COG5548 30 SLLSGVFSGLLLFVAAYLQLQGQTW---------------GLILATVVSA-ALLVFFALRLVRS 77 (105)
T ss_pred hhHHHHHHhHHHHHHHHHHHcCccc---------------CeehHHHHHH-HHHHhcchhcccc
Confidence 3567889999888998999875542 1134455554 3889999999876
No 33
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=26.06 E-value=4.3e+02 Score=24.49 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=52.7
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecC
Q 011423 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGN 356 (486)
Q Consensus 285 ~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN 356 (486)
.+.-..+++...+--++.+..+.+.|+.+||=+..+ .+ .....+.-+.|.+.+++.+|++.-+.+++|
T Consensus 74 ~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~-~~---~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D 141 (177)
T PF09580_consen 74 QQLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLD-FN---RFNTKKIKKKVEKAVKSADPRIYNVYVSTD 141 (177)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEec-cc---ccchhHHHHHHHHHHHHhCCCccEEEEEcC
Confidence 334455666678888999999999999999998887 44 567788888999999988887666655554
No 34
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=25.25 E-value=46 Score=32.35 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=35.0
Q ss_pred CCCCccchhhhhhhhHHHHHHHHHHHHHHHhHhhhccCCCcc--ccchhHHHHHHHHH
Q 011423 27 ASDALPLPLYLTNAIFFTLFFSVAYYLLHRWREKIRNSTPLH--VVTLSEIAAIVSLI 82 (486)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (486)
.-.|.-+.+..+|++|.++..-.++|+|++|- |-- +++..--+.+++|+
T Consensus 117 d~Ea~~~SifynNalFl~l~i~~SF~~lk~~~-------p~~Nyi~S~~~asgl~all 167 (170)
T PF07074_consen 117 DYEATTFSIFYNNALFLALVIVFSFYLLKNFS-------PVFNYIFSMSGASGLVALL 167 (170)
T ss_pred hhhheeeehhhhchHHHHHHHHHHHHHHccCC-------ccceeeehHHHHHHHHHHH
Confidence 34577788899999999999999999998774 433 44444444455544
No 35
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.78 E-value=67 Score=30.69 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=16.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 011423 36 YLTNAIFFTLFFSVAYYLLHR 56 (486)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (486)
|..+.++|.++|.++||+|.+
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k 50 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTR 50 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 445777888889999999877
No 36
>PRK14646 hypothetical protein; Provisional
Probab=22.57 E-value=4.3e+02 Score=24.91 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeecccc--ccchhhHHHHHHHHHHHHh--hCCCCeEEEEecCCCC
Q 011423 286 ETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTGDA--MGMNMVSKGVQNVLDFLQN--DFPDMDVIGISGNFCS 359 (486)
Q Consensus 286 ~~L~~~an~t--sR~g~L~~I~~~i~G~~v~lrf~~dTgDA--MG~NMVn~~~E~v~~~I~~--~f~~~~vi~IsgN~ct 359 (486)
++|.+.++.. +.+-.|.+|+..-.|+.-+||+.+|.-|- ++..-.....+++.++|.. -+++.-.+=+||==-.
T Consensus 7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGld 86 (155)
T PRK14646 7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVS 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCC
Confidence 3444444443 66788999999988888899999997443 5566666666666666642 2334334667776666
Q ss_pred CccceEEeeeeccceEEEe
Q 011423 360 DKKPAAVNWIEGRGKSVVC 378 (486)
Q Consensus 360 DKK~sA~n~I~gRGksVva 378 (486)
...-+...|..-.|+.|..
T Consensus 87 RpL~~~~df~r~~G~~v~V 105 (155)
T PRK14646 87 DELTSERDFKTFKGFPVNV 105 (155)
T ss_pred CcCCCHHHHHHhCCCEEEE
Confidence 6666666666666666533
No 37
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=21.59 E-value=74 Score=28.90 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 011423 36 YLTNAIFFTLFFSVAYYLLHR 56 (486)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ 56 (486)
++.|-+||.+|...+||+..-
T Consensus 2 ~ll~l~ffi~Fl~~~Y~~~y~ 22 (109)
T PF06129_consen 2 WLLYLIFFILFLVLCYFFNYY 22 (109)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 567889999999999998754
No 38
>PRK14630 hypothetical protein; Provisional
Probab=21.17 E-value=4.4e+02 Score=24.56 Aligned_cols=81 Identities=14% Similarity=0.027 Sum_probs=55.3
Q ss_pred CCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceE
Q 011423 296 SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKS 375 (486)
Q Consensus 296 sR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGks 375 (486)
..+-.|-+|+..-.|+.-++|+.+|..+-++..-......++.+.+.+-+++.-.+=+||==-....-+...|..-.|+.
T Consensus 20 ~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~ 99 (143)
T PRK14630 20 RLGIEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLILEAVLKYNFSLEISTPGINRKIKSDREFKIFEGKK 99 (143)
T ss_pred HcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCE
Confidence 56778999998777777789999998777777777777777777765533333236666665555555555555555555
Q ss_pred E
Q 011423 376 V 376 (486)
Q Consensus 376 V 376 (486)
|
T Consensus 100 v 100 (143)
T PRK14630 100 I 100 (143)
T ss_pred E
Confidence 5
No 39
>TIGR02206 intg_mem_TP0381 conserved hypothetical integral membrane protein TIGR02206. This model represents a family of hydrophobic proteins with seven predicted transmembrane alpha helices. Members are found in Bacillus subtilis (ywaF), TP0381 from Treponema pallidum (TP0381), Streptococcus pyogenes, Rhodococcus erythropolis, etc.
Probab=20.87 E-value=1.7e+02 Score=28.87 Aligned_cols=41 Identities=29% Similarity=0.520 Sum_probs=34.3
Q ss_pred hhccCCCccccchhHHHHHHHHH------HHHHHHHhhcCccccccccC
Q 011423 60 KIRNSTPLHVVTLSEIAAIVSLI------ASFIYLLGFFGIDFVQSFIS 102 (486)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 102 (486)
-++++-|||.-+++-+++++.++ -.+.|.+|+.| -+|+++.
T Consensus 63 ~~~e~LPLhlC~ia~~~~~~~l~~~~~~~~~~~~~~gi~G--a~~Ali~ 109 (222)
T TIGR02206 63 TLDESLPLHLCDIAIILAAIMLITKRRWFFQLTYFWGIGG--SFQALLT 109 (222)
T ss_pred chhhcCChhhccHHHHHHHHHHHcCcHHHHHHHHHHHHHH--HHHHHhc
Confidence 57789999999999999888885 46788888877 7888874
No 40
>PRK03557 zinc transporter ZitB; Provisional
Probab=20.71 E-value=8.6e+02 Score=25.00 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=43.5
Q ss_pred HHHHHHHH-hhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeE-EEEecCCCCC
Q 011423 285 FETLAVVF-NRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGISGNFCSD 360 (486)
Q Consensus 285 ~~~L~~~a-n~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~v-i~IsgN~ctD 360 (486)
.+++++.. ++....-++.+++.+..|+..++.+.+...+.+ =..+..+.+-+.|+++++-.++ +-++-+-|.+
T Consensus 222 ~~~i~~~i~~~~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~ 296 (312)
T PRK03557 222 IAELKRRLCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHG 296 (312)
T ss_pred HHHHHHHHHhcCCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCC
Confidence 45555443 223333467778888889888877777654433 2345666777777776654444 5555554443
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.42 E-value=5.9e+02 Score=24.05 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEE-E-----e--cC--CeEEEEEEeeccccccchhhHHHHHHHHHHHHh
Q 011423 274 ELKFFLEDPNNFETLAVVFNRSSRFARLQHIQC-S-----I--AG--KNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQN 343 (486)
Q Consensus 274 ~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~-~-----i--~G--~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~ 343 (486)
.+.+|-+. ..++|++.+.+..+||.+..|.. . + .+ ..+.|+|+-+.|-.. .+++. +++.|.+
T Consensus 39 ~l~~~R~~--R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~C--k~m~~----~l~~LA~ 110 (175)
T cd02987 39 FLQQYREQ--RMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGC--AALNS----SLLCLAA 110 (175)
T ss_pred HHHHHHHH--HHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchH--HHHHH----HHHHHHH
Confidence 44555443 45566666666789999999876 1 1 12 378889886654322 23333 4444445
Q ss_pred hCCCCeEEEEec-------CCCCCccceEEeeeecc
Q 011423 344 DFPDMDVIGISG-------NFCSDKKPAAVNWIEGR 372 (486)
Q Consensus 344 ~f~~~~vi~Isg-------N~ctDKK~sA~n~I~gR 372 (486)
.+|+.+.+.|.. +|-....|+-.-+-.|+
T Consensus 111 ~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~ 146 (175)
T cd02987 111 EYPAVKFCKIRASATGASDEFDTDALPALLVYKGGE 146 (175)
T ss_pred HCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCE
Confidence 577776655544 46677788877766543
Done!