Query 011423
Match_columns 486
No_of_seqs 306 out of 729
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 07:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r4f_A 3-hydroxy-3-methylgluta 100.0 6E-120 2E-124 940.2 28.9 349 133-481 27-378 (441)
2 1r31_A 3-hydroxy-3-methylgluta 100.0 1.5E-96 5E-101 764.3 21.2 305 153-481 3-335 (428)
3 3qae_A 3-hydroxy-3-methylgluta 100.0 1.3E-93 4.4E-98 746.0 20.0 303 155-481 37-366 (458)
4 3byp_A CZRB protein; membrane 73.4 18 0.0006 28.8 8.4 71 285-355 12-85 (94)
5 3h90_A Ferrous-iron efflux pum 61.2 30 0.001 33.1 8.7 66 285-350 208-273 (283)
6 2zzt_A Putative uncharacterize 56.8 53 0.0018 27.1 8.5 69 286-354 13-83 (107)
7 3j1z_P YIIP, cation efflux fam 40.9 30 0.001 33.8 5.2 66 285-350 217-282 (306)
8 2rdd_B UPF0092 membrane protei 39.2 21 0.00072 25.0 2.7 22 38-59 4-25 (37)
9 1v54_C Cytochrome C oxidase po 19.0 1.2E+02 0.004 29.4 4.9 21 49-69 50-72 (261)
10 3hhl_A RPA0582; alpha-beta-bar 18.7 75 0.0026 28.2 3.2 65 237-306 64-131 (143)
No 1
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=100.00 E-value=6.4e-120 Score=940.19 Aligned_cols=349 Identities=55% Similarity=0.902 Sum_probs=341.5
Q ss_pred CCCHHHHHHHHHcCCCCcccccccCCChhHhHHHHHHHHHHH--hCCCCCCCCCCCCChhhhhccccccceEEeeeceee
Q 011423 133 SAQDEDVVQSVIDGSIPSYALESKLGDCRRAAAIRREALQKM--TGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGI 210 (486)
Q Consensus 133 ~~~~~ei~~~v~~g~~~~~~les~l~d~~ra~~~RR~~l~~~--tg~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGV 210 (486)
.++||||++++.+|++|+|+||+.++|++||+.+||++|++. ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv 106 (441)
T 2r4f_A 27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV 106 (441)
T ss_dssp SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence 458999999999999999999999999999999999999999 778899999999999999999999999999999999
Q ss_pred ecceEEcCeEEeeeccccchhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHH
Q 011423 211 AGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAV 290 (486)
Q Consensus 211 AGPLlInG~ey~VPMATtEgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~ 290 (486)
||||+|||++|+|||||||||||||+|||||+++.+||+++++++|+|||+|+|+|+++.+|.++++|+++|++|++|++
T Consensus 107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~ 186 (441)
T 2r4f_A 107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE 186 (441)
T ss_dssp EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeee
Q 011423 291 VFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIE 370 (486)
Q Consensus 291 ~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~ 370 (486)
+++++||||||++|++++.|+++|+||.|||||||||||||+++|++|+||+++||++++++||||||+||||+|+|||+
T Consensus 187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~ 266 (441)
T 2r4f_A 187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE 266 (441)
T ss_dssp HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEecccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcccccchhhhhhHHHHHHHhCCCccccccccceeee
Q 011423 371 GRGKSVVCEATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALGGFNAHAANIVSAIFIATGQDPAQNVESSHCITM 450 (486)
Q Consensus 371 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~Ar~VESShalT~ 450 (486)
||||+|+||+++|++|++++++|++++++++|..||++|||+||++||||||+||||+||||||||||||+||||+|+|.
T Consensus 267 gRGk~V~ae~~i~~~vv~~vl~ts~~a~vd~~~aknl~gsa~ag~~gt~Nkh~aNgI~Av~lATGqD~a~~vEss~~~t~ 346 (441)
T 2r4f_A 267 GRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL 346 (441)
T ss_dssp CCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEE
T ss_pred CCceEEEEEEecHHHHHHHHHCcCHHHHHHHHHHhhhhHHHhhccCCcCCCChHHHhHHHhhhcCCcHHHHHhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec-CCCcEEEEEEeCceeeEeeecccccc
Q 011423 451 MEAIN-DGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 451 ~e~~~-dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
||..+ ||+|||+|||||||+||||||||+|+
T Consensus 347 le~~~~~~~dL~~svtlPsL~VGTVGGgT~lp 378 (441)
T 2r4f_A 347 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLL 378 (441)
T ss_dssp EEEESTTSCEEEEEEEEEEECCCSBSGGGGSH
T ss_pred eeeeccCCCeEEEEEECCCceEEeecCcCCCH
Confidence 99886 55699999999999999999999974
No 2
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*
Probab=100.00 E-value=1.5e-96 Score=764.32 Aligned_cols=305 Identities=19% Similarity=0.185 Sum_probs=288.6
Q ss_pred ccccCCChhH-hHHHHHHHHHHHhC---CCCCCCCCCCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeecccc
Q 011423 153 LESKLGDCRR-AAAIRREALQKMTG---RSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATT 228 (486)
Q Consensus 153 les~l~d~~r-a~~~RR~~l~~~tg---~sl~~l~~~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATt 228 (486)
..|++.+|++ ++++||++|++.++ .++++|+.+++|+++++++||||+|||+|||+||||||+|||++|+||||||
T Consensus 3 m~s~~~~f~~~s~~~Rr~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~iEN~IG~~~lP~GvAgpl~InG~~y~VPMATe 82 (428)
T 1r31_A 3 LDSRLPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDVLVPLVVE 82 (428)
T ss_dssp CCCCCTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHSSCCSCHHHHHHHSSSEEEEEEEEEEEECSCEETTEECCEEEECS
T ss_pred CCCcccccccccHHHHHHHHHHhcCCCHHHHHhccccCCChHHHHhcccccccceeecceeEecCEEECCeEEEeeeeec
Confidence 3567888988 99999999999999 4567788889999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcC-----CCcceee
Q 011423 229 EGCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSS-----RFARLQH 303 (486)
Q Consensus 229 EgsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~ts-----R~g~L~~ 303 (486)
|||||||+|||||+++.+||+++++++|+|||||+|.+ +.|+.++++|+++ ||++|+++||+++ |||||++
T Consensus 83 E~slVAs~srgaK~i~~~GG~~t~~~~~~M~r~~~~~~--~~~a~~~~~~i~~--~~~~l~~~a~~ts~~~~kr~ggl~~ 158 (428)
T 1r31_A 83 EPSIVAAASYMAKLARANGGFTTSSSAPLMHAQVQIVG--IQDPLNARLSLLR--RKDEIIELANRKDQLLNSLGGGCRD 158 (428)
T ss_dssp CTTHHHHHHHHHHHHHTTTCBEEEECCCEEEEEEEEES--CSCHHHHHHHHHH--THHHHHHHHHTTCHHHHHTTCEEEE
T ss_pred cccHHHHhhHHHHHHHhCCCEEEEECCCcEEeeeEEcc--ccCHHHHHHHHHH--HHHHHHHHHHhhCHHHHhCCcccce
Confidence 99999999999999999999999999999999999876 7899999999997 9999999999998 9999999
Q ss_pred EEEEecCC-----eEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEe
Q 011423 304 IQCSIAGK-----NLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVC 378 (486)
Q Consensus 304 I~~~i~G~-----~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVva 378 (486)
|++++.|+ ++|+||.|||||||||||||+++|++|+||+++||++.+++||||||+| |+|+|
T Consensus 159 i~~~~~g~~~~g~~l~l~~~~~tgDAMGaNmvn~~~E~v~~~l~~~~~~~~~~~I~sN~~td-------------k~V~A 225 (428)
T 1r31_A 159 IEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADL-------------RLARA 225 (428)
T ss_dssp EEEEEECCCTTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECSCCTT-------------SEEEE
T ss_pred EEEEecCCcCcCcEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCCEEEEEcCccCCC-------------ceEEE
Confidence 99999986 9999999999999999999999999999999999999999999999999 46788
Q ss_pred cccchHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhcc----cccchhhhhhHHHHHHHhCCCcccccccc---------
Q 011423 379 EATIKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGAL----GGFNAHAANIVSAIFIATGQDPAQNVESS--------- 445 (486)
Q Consensus 379 ea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~----gG~NkhiaNgIaAvfIATGQD~Ar~VESS--------- 445 (486)
|+.||.++++++ +++++++++ |++.||++||+. +|||||+||||+|||||||||||+++|||
T Consensus 226 e~~ip~~~l~~~-~~~~~~~~~----k~~~~s~~A~~~~~RA~t~Nk~~~Ngi~Av~lATGqD~ravea~sHayA~~~g~ 300 (428)
T 1r31_A 226 QVRITPQQLETA-EFSGEAVIE----GILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDWRAVEAGAHAYACRSGH 300 (428)
T ss_dssp EEEECHHHHCCS-SSCHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTSS
T ss_pred EEEEcHHHHhcC-CCCHHHHHH----HHHHHHHHhcchHHhhccCCCCHHHHHHHHHHHcCCCHHHHHhhhhHhHhhcCC
Confidence 999999999999 999999997 899999999997 88999999999999999999999888888
Q ss_pred -ceeeeeEEecCCCcEEEEEEeCceeeEeeecccccc
Q 011423 446 -HCITMMEAINDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 446 -halT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
+|||+||.+++| |||+||||| |+||||||||+||
T Consensus 301 y~~lt~~e~~~~g-~L~~svtlP-l~VGtVGGgt~l~ 335 (428)
T 1r31_A 301 YGSLTTWEKDNNG-HLVGTLEMP-MPVGLVGGATKTH 335 (428)
T ss_dssp CCCSEEEEECTTS-CEEEEEEEE-CCCCSBSTHHHHC
T ss_pred cccceEEEEcCCC-eEEEEEEee-eeEEEecCccccC
Confidence 679999997654 999999999 9999999999984
No 3
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A
Probab=100.00 E-value=1.3e-93 Score=746.01 Aligned_cols=303 Identities=21% Similarity=0.229 Sum_probs=279.8
Q ss_pred ccCCChhH-hHHHHHHHHHHHhCCCCCC---CCC-CCCChhhhhccccccceEEeeeceeeecceEEcCeEEeeeccccc
Q 011423 155 SKLGDCRR-AAAIRREALQKMTGRSLQG---LPL-DGFDYDSILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTE 229 (486)
Q Consensus 155 s~l~d~~r-a~~~RR~~l~~~tg~sl~~---l~~-~~~d~~~i~~~~iEN~IG~v~IPvGVAGPLlInG~ey~VPMATtE 229 (486)
+.+.+|++ ++++|+++|++.++.+.++ |.. ..+|. +++++||||+|||+|||+||||||+|||++|+|||||||
T Consensus 37 ~~~~~F~k~s~~eR~~~l~~~~~l~~~~~~~l~~~~~l~~-~~~~~~iEN~IG~~~lPvGvAgpl~InG~~y~VPMATeE 115 (458)
T 3qae_A 37 ISWNGFSKKSYQERLELLKAQALLSPERQASLEKDEQMSV-TVADQLSENVVGTFSLPYSLVPEVLVNGQEYTVPYVTEE 115 (458)
T ss_dssp CCCTTTTTSCHHHHHHHHHHHTCSCHHHHHHHHTTCCCCH-HHHHHHSSSCCCCCCCCCEEEEEEEETTEEEEEEECCCS
T ss_pred CCCcCccccCHHHHHHHHHHhcCCCHHHHHHHhccCCCCH-HHHhcccceeeeeeecceeeecCEEECCEEEEeeceecc
Confidence 56889999 9999999999999876543 333 45674 799999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhhhhccCCeEEEEccceeeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhc-----CCCcceeeE
Q 011423 230 GCLVASTNRGCKAIYASGGAASMLLRDGMTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRS-----SRFARLQHI 304 (486)
Q Consensus 230 gsLVASanRGaKai~~sGG~~t~v~~d~MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~t-----sR~g~L~~I 304 (486)
||||||+|||||+++.+||+++++++|+|||||+| +++.|+.++++|+++ ++++|+++||++ +|||||++|
T Consensus 116 ~slVASasrGaK~i~~~GG~~t~v~~~~Mtrqv~f--~~~~~a~~~~~~i~~--~~~~l~~~a~~~~~s~~~rgggl~~i 191 (458)
T 3qae_A 116 PSVVAAASYASKIIKRAGGFTTQVHQRQMIGQVAL--YQVANPKLAQEKIAS--KKAELLELANQAYPSIVKRGGGARDL 191 (458)
T ss_dssp TTHHHHHHHHHHHHHHTTCBEEEECCCCEEEEEEE--ECCSCHHHHHHHHHH--THHHHHHHHHHHCHHHHTTTCEEEEE
T ss_pred ccHHHHhhHHHHHHHhcCCEEEEEcCCceEeeeEe--cchhhHHHHHHHHHH--HHHHHHHHHHhhCchhhhcccceeEE
Confidence 99999999999999999999999999999999774 788999999999997 999999999963 799999999
Q ss_pred EEEe---cCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeEEEEecCCCCCccceEEeeeeccceEEEeccc
Q 011423 305 QCSI---AGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAT 381 (486)
Q Consensus 305 ~~~i---~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~vi~IsgN~ctDKK~sA~n~I~gRGksVvaea~ 381 (486)
++++ .|+++|+||.||||||||||||||++|++|++|+++||++.+++||||||+||| |+||++
T Consensus 192 ~~~~~~~~g~~l~lrf~~~TgDAMGaNMvn~~~E~v~~~l~~~~~~~~~~~I~sN~~tdk~-------------V~Ae~~ 258 (458)
T 3qae_A 192 HVEQIKGEPDFLVVYIHVDTQEAMGANMLNTMLEALKPVLEELSQGQSLMGILSNYATDSL-------------VTASCR 258 (458)
T ss_dssp EEEEECSSSCEEEEEEEEECTTSCCHHHHHHHHHHHHHHHHHHHTSEEEEEEECSCCGGGE-------------EEEEEE
T ss_pred EEEEecCCCCEEEEEEEEeccccccchHHHHHHHHHHHHHHHhCCCceEEEEeCcCCCCce-------------EEEEEE
Confidence 9998 899999999999999999999999999999999999999888999999999985 577888
Q ss_pred chHHHHHHHHcCCHHHHHhhhhhhhhhHHhhhhccc----ccchhhhhhHHHHHHHhCCCccccccccce----------
Q 011423 382 IKEEVVTKVLKTNVATLVELNTLKNLAGSAVAGALG----GFNAHAANIVSAIFIATGQDPAQNVESSHC---------- 447 (486)
Q Consensus 382 i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~g----G~NkhiaNgIaAvfIATGQD~Ar~VESSha---------- 447 (486)
||.++++++ ++++++++| |++.||++||+.+ +||||+||||+|||||||||||+++|||||
T Consensus 259 ip~~~l~~~-~~~~~~~ae----k~~~~s~~A~~~~yRA~t~NkgiaNgI~Av~lATGqD~aaveesshayAar~G~Y~~ 333 (458)
T 3qae_A 259 IAFRYLSRQ-KDQGREIAE----KIALASQFAQADPYRAATHNKGIFNGIDAILIATGNDWRAIEAGAHAFASRDGRYQG 333 (458)
T ss_dssp EEHHHHCSS-TTHHHHHHH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSSCCC
T ss_pred EcHHHHhhc-CCCHHHHHH----HHHHHHHHhccchhhhhhcchhhHhhhhHHHhhcCCchhHhHHHhhHHHhhcCCccc
Confidence 899999988 999999987 7889999999987 899999999999999999999888888875
Q ss_pred eeeeEEecCCCcEEEEEEeCceeeEeeecccccc
Q 011423 448 ITMMEAINDGKDLHISVTMPSIEVVLSEVELNLL 481 (486)
Q Consensus 448 lT~~e~~~dg~dL~~SvtLPSL~VGTVGGgt~l~ 481 (486)
||+||.+++++|||+||||| |+||||||||+|+
T Consensus 334 lT~~e~~~~~g~L~~svtlP-L~VGTVGGgT~l~ 366 (458)
T 3qae_A 334 LSCWTLDLEREELVGEMTLP-MPVATKGSSIGLN 366 (458)
T ss_dssp SEEEEEETTTTEEEEEEEEE-CCCCSCSHHHHHC
T ss_pred ceeEEEecCCCEEEEEEEec-ceeeeecCccccC
Confidence 89999875667999999999 9999999999984
No 4
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=73.39 E-value=18 Score=28.79 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHhhc--CCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeE-EEEec
Q 011423 285 FETLAVVFNRS--SRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV-IGISG 355 (486)
Q Consensus 285 ~~~L~~~an~t--sR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~v-i~Isg 355 (486)
.++|++...+. ...-++.+++.+..|...++.+.+...+.|-..-....++.+-+.|++.||...+ +-+..
T Consensus 12 ~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~vtIh~ep 85 (94)
T 3byp_A 12 VERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQATIHVEP 85 (94)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45666666666 6677888999998898888888888776664333456677777778777987655 55553
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=61.21 E-value=30 Score=33.11 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeE
Q 011423 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (486)
Q Consensus 285 ~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~v 350 (486)
.+++++..++....-++.+++.+..|+..++.+.+...+-|-..-.....+.+-+.|+++||..++
T Consensus 208 ~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v 273 (283)
T 3h90_A 208 RQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDV 273 (283)
T ss_dssp HHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 456677776666667888999998999888888888877665445567777888888878987655
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=56.83 E-value=53 Score=27.12 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCC-eE-EEEe
Q 011423 286 ETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDM-DV-IGIS 354 (486)
Q Consensus 286 ~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~-~v-i~Is 354 (486)
++|++..++....-++.++.++..|+.+++.+.+...+.|-..-.-..++.+-..|++.||.. .+ +-+.
T Consensus 13 ~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvE 83 (107)
T 2zzt_A 13 DDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVE 83 (107)
T ss_dssp HHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 567777766666667778888888988888888877666643344466777777787779854 33 5554
No 7
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=40.93 E-value=30 Score=33.77 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCCcceeeEEEEecCCeEEEEEEeeccccccchhhHHHHHHHHHHHHhhCCCCeE
Q 011423 285 FETLAVVFNRSSRFARLQHIQCSIAGKNLYIRFCCTTGDAMGMNMVSKGVQNVLDFLQNDFPDMDV 350 (486)
Q Consensus 285 ~~~L~~~an~tsR~g~L~~I~~~i~G~~v~lrf~~dTgDAMG~NMVn~~~E~v~~~I~~~f~~~~v 350 (486)
.+++++..++....-++.+++.+..|+..++.+.+..-+-|-..=.-..+|.+-+.|++.||..++
T Consensus 217 ~~~I~~~i~~~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v 282 (306)
T 3j1z_P 217 RQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEV 282 (306)
T ss_dssp HHHHHHHHHHSTTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHhcCCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 456677777777777788889988999998888888776665444455677777788888887665
No 8
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=39.21 E-value=21 Score=24.97 Aligned_cols=22 Identities=14% Similarity=0.393 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhHh
Q 011423 38 TNAIFFTLFFSVAYYLLHRWRE 59 (486)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~ 59 (486)
+.-+.+.++|.+.||++-|=..
T Consensus 4 ~~~l~~v~~~~ifYFl~iRPQ~ 25 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQ 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH
Confidence 4456788899999999977443
No 9
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=18.99 E-value=1.2e+02 Score=29.41 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred HHHHHHHHhHhhhccCC--Cccc
Q 011423 49 VAYYLLHRWREKIRNST--PLHV 69 (486)
Q Consensus 49 ~~~~~~~~~~~~~~~~~--~~~~ 69 (486)
+.+-++.-|||-+|.+| |+|-
T Consensus 50 ~~~~~~~W~~dv~~e~~~~g~ht 72 (261)
T 1v54_C 50 NMLTMYQWWRDVIRESTFQGHHT 72 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhccccccccccCCCCc
Confidence 33444555699999986 7774
No 10
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=18.68 E-value=75 Score=28.21 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=37.0
Q ss_pred hhhhhhhhccCCeEEEEccce---eeeceEEEeCChhcHHHHHHHhcCCCCHHHHHHHHhhcCCCcceeeEEE
Q 011423 237 NRGCKAIYASGGAASMLLRDG---MTRAPIVRFASAMRASELKFFLEDPNNFETLAVVFNRSSRFARLQHIQC 306 (486)
Q Consensus 237 nRGaKai~~sGG~~t~v~~d~---MtRapv~~f~~~~dA~~~~~wi~~p~n~~~L~~~an~tsR~g~L~~I~~ 306 (486)
-.|.|.+-. ||....+..+. -.|..+++|+|.+ .+..|.++|+ .++++..-......-+|.-.+.
T Consensus 64 ~~GG~~l~r-G~~~~~lEG~~~e~~~~~viieFPS~~---aa~a~y~Spe-Yq~a~~~R~~a~~~~rli~~~~ 131 (143)
T 3hhl_A 64 RLGGXVVWQ-GQFELMLIGPQDEHWDHVFIAEYPSVA---AFVEMIRDPV-YREAVKHRQAAVEDSRLIRLXP 131 (143)
T ss_dssp HTTCEEEEE-EEEEEEEESCTTCCCSEEEEEEESCHH---HHHHHHHCHH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HcCCEEEee-cCCceeEECCCCCCCCeEEEEECCCHH---HHHHHHcCHH-HHHHHHHHHHhhccceeEEecC
Confidence 446666644 44444445543 4677899999854 4578998864 4555544444444334444333
Done!