Query 011424
Match_columns 486
No_of_seqs 461 out of 1378
Neff 11.2
Searched_HMMs 13730
Date Mon Mar 25 07:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 1.8E-38 1.3E-42 305.7 29.7 400 39-478 23-429 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 1.1E-29 8.2E-34 240.7 28.6 383 41-478 7-398 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 5.9E-15 4.3E-19 138.2 8.2 140 84-239 261-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 7.2E-13 5.2E-17 125.4 12.8 149 41-195 249-405 (447)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 17.2 2.7E+02 0.019 23.1 11.4 46 144-189 284-330 (383)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 12.0 80 0.0058 14.4 3.6 11 231-241 18-28 (30)
7 d3proc1 d.52.1.1 (C:6-85) Alph 11.3 1.7E+02 0.013 17.9 4.7 14 64-77 4-17 (80)
8 d2iuba2 f.17.3.1 (A:286-349) M 4.5 2.5E+02 0.018 15.9 2.4 15 464-478 45-59 (64)
9 d3b45a1 f.51.1.1 (A:91-270) Gl 4.3 5.8E+02 0.042 17.7 7.9 31 341-371 69-99 (180)
10 d1u69a_ d.32.1.7 (A:) Hypothet 3.4 80 0.0059 22.5 -0.8 17 101-117 102-118 (156)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.8e-38 Score=305.67 Aligned_cols=400 Identities=12% Similarity=0.032 Sum_probs=283.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhcccHHHHHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHH
Q 011424 39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG 118 (486)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~ 118 (486)
+|..+..++++.+..+++...+..+.|.+. |+|.|.+| .|++.+++.+++.++++++|+++||+|||+++.++
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 444555666677777777777887778665 68999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc----hHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhhhhhh
Q 011424 119 TASVVIFNTLFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193 (486)
Q Consensus 119 ~~~~~~~~~~~~~a~----~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l 193 (486)
.++.+++.+++++++ +++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 999999999988764 7789999999999998888775 99999999999999999999999999999999999887
Q ss_pred cccCccCCcccccccccccCCChhhHHHHHHHHHHH-HHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
.+. ..+||+.+ .+.++..++. ++...+.+|+|+..+....++... +..++..++.+++.....
T Consensus 176 ~~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 239 (447)
T d1pw4a_ 176 MAW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ 239 (447)
T ss_dssp HHH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred hhh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhh
Confidence 761 22455444 4544444443 444555666655433222111111 111111111111122223
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
...+..++++.++......++..........+.+.|+.+. .+++..+.+.......+..+++.+ ..+++.||.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~ 313 (447)
T d1pw4a_ 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF 313 (447)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhcc
Confidence 3456678889988888888887777777777888877655 788999999999999999999988 5566666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHHHHHHHH-
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF- 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g- 431 (486)
+++........................ .......+..+..++......+....+..|.+|++.||++.|+.+...+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 314 RGNRGATGVFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 544333322222222222211111111 122223333344455556667778888899999999999999999988875
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++|.+.|.+.|.. |+...|++.+++.+++.++...
T Consensus 393 ~~~~~~~~g~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFF----------GWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHSS----------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----------ChHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999887 7888888887777777665544
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.1e-29 Score=240.70 Aligned_cols=383 Identities=11% Similarity=0.083 Sum_probs=256.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHH-HHHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
++++.+.+..++..+..+...|.+|. +.+++|.|+.+ .|++.+++.++..++++++|+++||+||||+++++.
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 56778888888888888999999986 55678999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHH----HHHHHhhccchhh-HHHHHhhhcc--chhhhhHhhHHHHHhhhhHHHHhhhhhh
Q 011424 120 ASVVIFNTLFGLSVNFWMAVLT----RFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~~~~~~~~a~~~~~l~~~----r~l~G~~~g~~~~-~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~l~~~ 192 (486)
.+..++..+..+.++....... +.+.+.+.+.... ......+..+ .+++.+..+........+..++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (417)
T d1pv7a_ 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI 160 (417)
T ss_dssp HHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccc
Confidence 9999999888887766655443 3443433333332 3333333332 2345567778888889999999999999
Q ss_pred hcccCccCCcccccccccccCCChhhHHHHHHHHHHHHHHHHhcCCcccCCCCCCCcccchhhhccccccchhhhcccCC
Q 011424 193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA 272 (486)
Q Consensus 193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (486)
+.+ ...++..........+...+..+..+|+++..++++++++.. ++...
T Consensus 161 l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 210 (417)
T d1pv7a_ 161 MFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFSL 210 (417)
T ss_dssp HHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCCH
T ss_pred ccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccccc
Confidence 886 111222223333334444555556666655443322111110 01111
Q ss_pred CcccccccchhhHHHHHHHHHHHhhhhhhhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011424 273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG 352 (486)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (486)
....+..+++..+......................+... .....+.+....+.......++..++.. ..+++.||.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~ 287 (417)
T d1pv7a_ 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS--FFATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG 287 (417)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHC
T ss_pred cccccccccccccchhhhhHHHHHHHHhhhccccccccc--cccccccchhhhcccccccccccccchh-hhhhhhcccc
Confidence 112233344443333333333333323333333333322 2223456677778888888888888887 6666777779
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccCchhhHHhHHH-HHHHHH
Q 011424 353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLF 431 (486)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g 431 (486)
+++.+..+..+..+....+.+... .+ ...+..++.+++.....+....+..|.+|++.|+++.|+.. ....+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 288 GKNALLLAGTIMSVRIIGSSFATS-----AL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred cccchhhhHHHHHHhhhccccccc-----cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 999888887777766665544321 12 23344445555666777888899999999999999999865 557799
Q ss_pred HHHHhhhHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011424 432 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 478 (486)
Q Consensus 432 ~~~~~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 478 (486)
..++|.+.|++.|.. |++.+|++.+++.++..++..+
T Consensus 362 ~~i~~~~~G~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 362 MIFMSVLAGNMYESI----------GFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 8999999988888887776665
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.52 E-value=5.9e-15 Score=138.21 Aligned_cols=140 Identities=18% Similarity=0.136 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccchhhH-HHHHhhh
Q 011424 84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 162 (486)
Q Consensus 84 ~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 162 (486)
.+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 340 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888889999999999999999999999999999999999999999999999999999999998888776 9999999
Q ss_pred ccchhhhhHhhHH-HHHhhhhHHHHhhhhhhhcccCccCCcccccccccccCCChhhHHHHHHHHHHHHH-HHHhcCCc
Q 011424 163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPET 239 (486)
Q Consensus 163 ~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~ 239 (486)
+|+++|++..+.. +....+|..++|.++|++.+ .+| ++..+.+.++..++..+ ..+.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g---------~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIG---------FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHC---------HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999975 55677999999999999998 344 44444666665555443 44445443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.40 E-value=7.2e-13 Score=125.42 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhcccHHHH-HHHhcccccchhhhhHhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhhhHHH
Q 011424 41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT 119 (486)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~s~~~~~~~i~~~~~G~l~dr~Grr~~l~~~~ 119 (486)
+.++.+....++............|.+ .+.++.+..+ .++..+...++..++.++.|++.||++||+......
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 322 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 322 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence 444445555555555555555556654 4557888888 899999999999999999999999999876544433
Q ss_pred HHHHH---HHHHHhc--cchHHHHHHHHHHHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhh-hHHHHhhhhhh
Q 011424 120 ASVVI---FNTLFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF 192 (486)
Q Consensus 120 ~~~~~---~~~~~~~--a~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~ig~~l~~~ 192 (486)
....+ +..+... ..+.+...+.-++.|++.+...+. ..+..|.+|+++|+++.|+.+....+ |.+++|.+.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~ 402 (447)
T d1pw4a_ 323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402 (447)
T ss_dssp HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2222222 457788888888889887776665 88999999999999999998877766 56778999999
Q ss_pred hcc
Q 011424 193 LAQ 195 (486)
Q Consensus 193 l~~ 195 (486)
+.+
T Consensus 403 ~~~ 405 (447)
T d1pw4a_ 403 TVD 405 (447)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=17.18 E-value=2.7e+02 Score=23.11 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=23.8
Q ss_pred HHHhhccchhhH-HHHHhhhccchhhhhHhhHHHHHhhhhHHHHhhh
Q 011424 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL 189 (486)
Q Consensus 144 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l 189 (486)
+.|+..|..... ..++.+..+-++---+.++...+.-.|.+..++.
T Consensus 284 ~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 284 IIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 445544444443 4555445555555556666655555555554444
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.04 E-value=80 Score=14.44 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHhcCCccc
Q 011424 231 IAAFWLPETLH 241 (486)
Q Consensus 231 ~~~~~~~e~~~ 241 (486)
....+.+|+|+
T Consensus 18 ffaiffreppr 28 (30)
T d2axtt1 18 FFAIFFREPPR 28 (30)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHHhcCCCC
Confidence 34456677654
No 7
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=11.32 E-value=1.7e+02 Score=17.90 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.5
Q ss_pred HHHHHHHhcccccc
Q 011424 64 LYFMIKDFQIAKRE 77 (486)
Q Consensus 64 ~~~~~~~~~~~~~~ 77 (486)
+..+.+|+|+++.|
T Consensus 4 ~~AmqRDLgLt~~q 17 (80)
T d3proc1 4 KFAMQRDLGIFPTQ 17 (80)
T ss_dssp HHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCHHH
Confidence 34678999999988
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.51 E-value=2.5e+02 Score=15.92 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhc
Q 011424 464 VLNVVEAIGVLMTFK 478 (486)
Q Consensus 464 ~~~~~~~~~~~~~~~ 478 (486)
+.++...++.+..+.
T Consensus 45 ~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 45 VLAVMGVIAVIMVVY 59 (64)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=5.8e+02 Score=17.66 Aligned_cols=31 Identities=16% Similarity=-0.057 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 011424 341 LSLYPFLERILGPIMVARIAGVLTIPLLTSY 371 (486)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (486)
...+..+.++.|+++...........+....
T Consensus 69 ~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~ 99 (180)
T d3b45a1 69 WYLGGAVEKRLGSGKLIVITLISALLSGYVQ 99 (180)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhheeeeeHHHHHHHHHH
Confidence 3367788888898887766555544444433
No 10
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.44 E-value=80 Score=22.49 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.9
Q ss_pred hhhhhhhhcCCchhhhH
Q 011424 101 FWGLVADRYGRKPVIIM 117 (486)
Q Consensus 101 ~~G~l~dr~Grr~~l~~ 117 (486)
+.|++.||||-++.+.-
T Consensus 102 ~~G~v~DkFGV~Wqi~~ 118 (156)
T d1u69a_ 102 ACGWCRDKWGISWQITP 118 (156)
T ss_dssp STTEEECTTSCEEEEEE
T ss_pred CCeEEECCCCCEEEeCh
Confidence 46999999999887653
Done!