BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011427
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|1 Chain 1, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|1 Chain 1, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|B Chain B, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 438
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/377 (50%), Positives = 254/377 (67%), Gaps = 10/377 (2%)
Query: 94 KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREI 153
K D ++ EVK+SGLRGRGGAGFP+GLKWSFMPK DG+ YL+ NADESEPG+ KDR I
Sbjct: 48 KTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYI 106
Query: 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213
+ PH L+EG ++AG +RA+ YIY+RGEY LE+A +EA A G LGKN G+
Sbjct: 107 LEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTD 166
Query: 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAV 273
+ FD+H+H GAGAYICGEETAL+ SLEG + PRLKPPFPA +GL+G PTT+ NVET+A
Sbjct: 167 FSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAS 226
Query: 274 SPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333
I+ RG DWFA G + + G KL+ +SG V +P E M +ELI GG
Sbjct: 227 VVPIMERGADWFAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP--- 283
Query: 334 WDNLLAVIPGGSSVPLLPKHICDDVL---MDYDALKAVQSGLGTAAVIVMDKSTDVVDAI 390
+ + A+IPGGSS P LP ++VL M Y+ L+A S LGT VI++ + +VDA+
Sbjct: 284 LEPIQAIIPGGSSTPPLP--FTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAM 341
Query: 391 ARLSYFYKHESCGQCTPCREGT-GWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICA 449
L+ FY HESCG+CTPCREG G++ + ++ G + ++++ L+ + IEG + C
Sbjct: 342 WNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCP 401
Query: 450 LGDAAAWPVQGLIRHFR 466
L DAA WPV+G +RHF+
Sbjct: 402 LADAAVWPVKGSLRHFK 418
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 80 MKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDG 131
++ GD K+L+ K DW+++E+K L G PS L+WS P G
Sbjct: 455 LETGD-SSVKNLIKKWVDWVMSEIK---LYDDGTFAIPSDLEWSGQPDTWTG 502
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 363 DALK-AVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMER 421
DAL+ A + + A+ + + + D+ + + RL +FY +SC C GT L E
Sbjct: 78 DALQIATAAAVNCASEVDLCRKYDI-NFVPRLFFFYPRDSCRSNEEC--GTSSL----EH 130
Query: 422 LKVGNAKLEEIDMLQEVTKQIEGHTI 447
+ N+ LE ++ EV + + H +
Sbjct: 131 VAFENSHLEVDELESEVRRLVNKHMV 156
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 363 DALK-AVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMER 421
DAL+ A + + A+ + + + D+ + + RL +FY +SC C GT L E
Sbjct: 78 DALQIATAAAVNCASEVDLCRKYDI-NFVPRLFFFYPRDSCRSNEEC--GTSSL----EH 130
Query: 422 LKVGNAKLEEIDMLQEVTKQIEGHTI 447
+ N+ LE ++ EV + + H +
Sbjct: 131 VAFENSHLEVDELESEVRRLVNKHMV 156
>pdb|3TTB|A Chain A, Structure Of The Thioalkalivibrio Paradoxus Cytochrome C
Nitrite Reductase In Complex With Sulfite
pdb|3TTB|B Chain B, Structure Of The Thioalkalivibrio Paradoxus Cytochrome C
Nitrite Reductase In Complex With Sulfite
pdb|3SXQ|A Chain A, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Paradoxus
pdb|3SXQ|B Chain B, Structure Of A Hexameric Multiheme C Nitrite Reductase
From The Extremophile Bacterium Thiolkalivibrio
Paradoxus
Length = 525
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 215 DFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVS 274
DF +H+ Y+C + S E + + L + GL P E V ++
Sbjct: 216 DFARDLHHPVNCYMCHDP----HSTEPRVVRDALIHAV-VDQGLGTYPYDEAKSEHVTLT 270
Query: 275 PTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCT 310
P +RG + F G N + + L C HV C
Sbjct: 271 PVTFQRGGEDFRKIGLLNVADSNLMCGQCHVEYNCN 306
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The
Molecular Chaperonin Groel Apical Domain
Length = 193
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 304 HVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYD 363
+NKP T E E+ P L+D+ +R L AV G PLL I +DV + +
Sbjct: 21 FINKPETGEVELESPFILLVDKKISNIRELLPVLEAVAKAGK--PLL--IIAEDV--EGE 74
Query: 364 ALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERL- 422
AL A +V++ +V A + + TG +I E L
Sbjct: 75 AL----------ATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGG-TVISEELG 123
Query: 423 -KVGNAKLEEIDMLQEVTKQIEGHTIC-ALGDAAAWPVQGLIRHFRPELERRIKEHAERE 480
K+ A LE++ + V + TI +G+ AA +QG + R ++E ++ +
Sbjct: 124 MKLEKATLEDLGQAKRVVITKDTTTIIDGVGEEAA--IQGRVAQIRQQIEEATSDYDREK 181
Query: 481 LLEATA 486
L E A
Sbjct: 182 LQERVA 187
>pdb|3O9Z|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3O9Z|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And
Alpha-Ketoglutarate At 1.45 Angstrom Resolution
pdb|3OA0|A Chain A, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|B Chain B, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|C Chain C, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
pdb|3OA0|D Chain D, Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From
Thermus Thermophilus In Complex With Nad And Udp-Glcnaca
Length = 312
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 70 GMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS 129
G D L RG W+ G W V+E K GL G F L W F
Sbjct: 150 GAKDVVLTYVTGRGKWY--------GKSWKVDEAKSGGLATNIGIHFFDLLAWLF----- 196
Query: 130 DGRPSYL-------VVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIR 182
GR ++ VNA E + R + DP + E G + + I +
Sbjct: 197 -GRALHVEVHARTPTVNAGYLELEGARVRWFLSIDPSFVPEPLRRQG---KRTYRSIAVD 252
Query: 183 GEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGK 242
GE V + E Y K G G+ D A ALL +L
Sbjct: 253 GEEVEFSEGFTDLHTEVYR-----KTLAGEGFGLD-------EAAEAIRVAALLRTLPLS 300
Query: 243 QGKPRLKPPF 252
Q P + PF
Sbjct: 301 QPSPENRHPF 310
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 88 TKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS----DGRPSYLVVNADE 142
T D + K D ++ E +R G GF ++ P+V+ DG +YLV +E
Sbjct: 370 TSDFLGKDRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTYLVRQREE 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,170,319
Number of Sequences: 62578
Number of extensions: 678203
Number of successful extensions: 1425
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 9
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)