Your job contains 1 sequence.
>011428
MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS
DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI
LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL
KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS
RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL
VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES
RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC
KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH
KKKKSL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011428
(486 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116920 - symbol:AT4G34910 species:3702 "Arabi... 1574 1.2e-161 1
DICTYBASE|DDB_G0280407 - symbol:ddx56 "DEAD/DEAH box heli... 432 1.4e-74 2
SGD|S000004266 - symbol:DBP9 "DEAD-box protein required f... 406 5.4e-73 2
ZFIN|ZDB-GENE-040825-3 - symbol:ddx56 "DEAD (Asp-Glu-Ala-... 732 2.0e-72 1
ASPGD|ASPL0000000390 - symbol:AN6374 species:162425 "Emer... 435 3.7e-72 2
MGI|MGI:1277172 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) bo... 705 1.4e-69 1
RGD|1303195 - symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box he... 701 3.8e-69 1
UNIPROTKB|G3V6M5 - symbol:Ddx56 "Protein Ddx56" species:1... 701 3.8e-69 1
UNIPROTKB|Q3SZ40 - symbol:DDX56 "Probable ATP-dependent R... 683 3.1e-67 1
UNIPROTKB|F1SSH6 - symbol:DDX56 "Uncharacterized protein"... 679 8.2e-67 1
UNIPROTKB|Q9NY93 - symbol:DDX56 "Probable ATP-dependent R... 670 7.4e-66 1
UNIPROTKB|J9NSI3 - symbol:DDX56 "Uncharacterized protein"... 669 9.4e-66 1
FB|FBgn0001565 - symbol:Hlc "Helicase" species:7227 "Dros... 632 7.9e-62 1
UNIPROTKB|H7C3E9 - symbol:DDX56 "Probable ATP-dependent R... 537 9.2e-52 1
WB|WBGene00016073 - symbol:C24H12.4 species:6239 "Caenorh... 537 9.2e-52 1
CGD|CAL0004220 - symbol:orf19.3393 species:5476 "Candida ... 534 1.9e-51 1
UNIPROTKB|Q5A4P9 - symbol:DBP9 "ATP-dependent RNA helicas... 534 1.9e-51 1
UNIPROTKB|G3V0G3 - symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) b... 484 3.8e-46 1
POMBASE|SPCC1494.06c - symbol:SPCC1494.06c "ATP-dependent... 438 2.8e-41 1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 203 1.0e-26 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 206 5.4e-26 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 206 5.4e-26 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 223 1.1e-24 2
UNIPROTKB|Q8EDC4 - symbol:SO_2838 "ATP-dependent RNA heli... 199 1.8e-24 2
TIGR_CMR|SO_2838 - symbol:SO_2838 "ATP-dependent RNA heli... 199 1.8e-24 2
GENEDB_PFALCIPARUM|PFL2010c - symbol:PFL2010c "DEAD/DEAH ... 181 3.8e-24 3
UNIPROTKB|Q8I511 - symbol:PFL2010c "DEAD/DEAH box helicas... 181 3.8e-24 3
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 188 5.8e-24 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 188 5.8e-24 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 203 8.7e-24 2
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 195 1.4e-23 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 215 1.5e-23 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 183 1.6e-23 3
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 183 1.7e-23 3
UNIPROTKB|Q4K4H4 - symbol:rhlE_2 "Putative ATP-dependent ... 198 1.8e-23 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 194 3.5e-23 3
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 191 5.9e-23 3
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 189 6.2e-23 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 189 6.2e-23 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 211 7.6e-23 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 201 8.5e-23 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 193 1.3e-22 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 195 2.0e-22 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 194 2.7e-22 2
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 194 2.7e-22 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 197 2.8e-22 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 197 2.8e-22 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 197 3.4e-22 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 194 3.5e-22 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 184 5.2e-22 3
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 177 6.7e-22 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 198 6.8e-22 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 176 7.8e-22 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 186 1.0e-21 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 186 1.0e-21 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 186 1.0e-21 2
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 195 1.1e-21 2
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 195 1.1e-21 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 182 1.2e-21 3
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 184 1.2e-21 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 192 1.3e-21 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 189 1.3e-21 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 189 1.3e-21 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 182 1.4e-21 2
UNIPROTKB|Q9KNA4 - symbol:VC_A0061 "ATP-dependent RNA hel... 173 1.9e-21 2
TIGR_CMR|VC_A0061 - symbol:VC_A0061 "ATP-dependent RNA he... 173 1.9e-21 2
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 193 1.9e-21 2
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 193 1.9e-21 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 181 2.0e-21 2
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 182 2.1e-21 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 182 2.3e-21 3
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 181 2.6e-21 3
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 181 3.4e-21 3
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 179 3.5e-21 2
UNIPROTKB|Q81JK1 - symbol:BAS5307 "ATP-dependent RNA heli... 163 3.8e-21 2
TIGR_CMR|BA_5703 - symbol:BA_5703 "ATP-dependent RNA heli... 163 3.8e-21 2
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 186 5.1e-21 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 182 7.8e-21 2
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 180 8.3e-21 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 209 1.1e-20 3
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 209 1.1e-20 3
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 192 1.3e-20 2
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 179 1.3e-20 3
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 182 1.6e-20 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 182 1.6e-20 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 181 1.8e-20 2
WB|WBGene00000479 - symbol:cgh-1 species:6239 "Caenorhabd... 185 2.0e-20 2
UNIPROTKB|Q95YF3 - symbol:cgh-1 "ATP-dependent RNA helica... 185 2.0e-20 2
UNIPROTKB|B4DRZ7 - symbol:DDX19A "ATP-dependent RNA helic... 199 3.0e-20 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 190 3.1e-20 2
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 172 3.2e-20 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 172 3.2e-20 2
UNIPROTKB|I3L352 - symbol:DDX19A "ATP-dependent RNA helic... 199 3.5e-20 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 168 3.6e-20 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 168 3.6e-20 2
GENEDB_PFALCIPARUM|PFB0860c - symbol:PFB0860c "RNA helica... 205 3.7e-20 2
UNIPROTKB|O96264 - symbol:PFB0860c "DEAD/DEAH box helicas... 205 3.7e-20 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 175 3.9e-20 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 178 4.5e-20 2
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 175 5.6e-20 2
WARNING: Descriptions of 685 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 1574 (559.1 bits), Expect = 1.2e-161, P = 1.2e-161
Identities = 318/488 (65%), Positives = 384/488 (78%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LIELC+ VQLK VQLTSSM ASD+R ALAG P+I+++TP C+PKC + GVL+ + S+
Sbjct: 142 SLIELCR--VQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSE 199
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL ILVLDEADLLLSYGYED+L++++++IPR CQCLLMSAT+SSDV+KLKKLILHNP +L
Sbjct: 200 SLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 259
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
TL E D K+E +P NVQQFWISCS +DK VQKK LIF NTIDM FRLK
Sbjct: 260 TLTEDND-KEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLK 318
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEG-GHVD 239
LFLEKFGIKSAILN ELPQNSRLHILE+FNAGLFDYLIATDD +QTK++ + +G + +
Sbjct: 319 LFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKE 378
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
++K+ K K KLD+EFGVVRGIDFK VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVS
Sbjct: 379 NKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVS 438
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
L+SPDEM+ FE+IKSF+ D+N+D +II PFPLL +NAVESLRYRAEDVAKSVTKIAVRE
Sbjct: 439 LISPDEMEGFEDIKSFLASDKNKDIDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRE 498
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEA 419
SRAQDLRNEI+NSEKLKAHFE NP PA HL+D+P+YL+DAKTQEA
Sbjct: 499 SRAQDLRNEIINSEKLKAHFEANPRDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEA 558
Query: 420 CKMVKLARAAMGNKNSSRRQGPR-----RKFRK-SDPLKSFSAEPTKRAGKGRMKREGRN 473
KMVKLARAAMGN S G R ++ RK SDPLK+F+ +KR G+ ++G++
Sbjct: 559 SKMVKLARAAMGNTRRSGGGGGRNNKNKKRSRKGSDPLKTFNPNGSKRGAVGQ--KDGKD 616
Query: 474 GDDTGKHK 481
T K K
Sbjct: 617 SSSTKKQK 624
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 432 (157.1 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 90/225 (40%), Positives = 140/225 (62%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 69
Q + VVQL + + + L PD++++TP + + L +Q +S +L ILV+D
Sbjct: 124 QQLVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENKTIQLQS---TLDILVID 180
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EADL+L+YG+++D+ + + +P+ CQC LMSAT + +V++LKKL+LH P +L L E
Sbjct: 181 EADLVLNYGHQNDINIIKSFLPKVCQCFLMSATLTKEVEELKKLVLHTPAVLKLEE---- 236
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D+ I N+ ++ I C+E DK +Q K L F N + ++LKLF E+F I
Sbjct: 237 -DKAIQTNLSEYSIKCAEVDKFLLVFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFHI 295
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
K A+LN+ELP NSR I+ +FN GLFDYLIATD++ + ++ +E
Sbjct: 296 KCAVLNSELPINSRHDIILQFNKGLFDYLIATDESFKSDSNKKEE 340
Score = 348 (127.6 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 84/244 (34%), Positives = 132/244 (54%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSK--KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 279
+D + +E D +E D +K+K K +K D E+GV RGIDF+NV V+NF+ P+
Sbjct: 390 EDEENEEDDDEEENEEDDDKKNKNKKINNSKGDKEYGVARGIDFRNVDIVVNFDFPRTIK 449
Query: 280 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVE 339
Y+HRIGRT R N G ++S V+ ++ +++ GD N+ PF NA+E
Sbjct: 450 NYIHRIGRTARGTNKGIALSFVTYHNEELLKKVSKTRGD---AGYNL-KPFEF-KMNAIE 504
Query: 340 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXXXXXXXXXXXP 399
RYR EDV +++ A++E++ +L+ E+LN+EKLK+HF NP
Sbjct: 505 GFRYRVEDVLRTIGIRAIKEAKKTELKQELLNNEKLKSHFSENPQDLLALKHDTTLIKKQ 564
Query: 400 PASHLRDVPDYLLDAKTQE-ACKMVKL--ARAAMGNKNSSRRQ-GPRRKF----RKSDPL 451
HLR VP+YLL + + A + +++ +R G+ ++ R G +K RK D L
Sbjct: 565 VPLHLRVVPEYLLPTQFKNHADQKLEIIPSRPQSGHHGTTGRSLGVNKKLEQKKRKKDIL 624
Query: 452 KSFS 455
K+ S
Sbjct: 625 KTLS 628
Score = 45 (20.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 444 KFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 480
++R D L++ K A K +K+E N + H
Sbjct: 507 RYRVEDVLRTIGIRAIKEAKKTELKQELLNNEKLKSH 543
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 406 (148.0 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 95/239 (39%), Positives = 138/239 (57%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK ++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKK 245
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK 355
Score = 352 (129.0 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 91/250 (36%), Positives = 131/250 (52%)
Query: 223 DTQTKEKDQSDEGGHVDSRK--SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
+T+ +E ++S EG + +K KK + K D E+GV RG+DFKNV V+NF++P A
Sbjct: 348 NTENQE-EKSLEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKS 406
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA------------ 328
YVHR+GRT R TG ++S V P +K F + K + +D I++
Sbjct: 407 YVHRVGRTARGGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLE 464
Query: 329 --PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXX 386
P+ Q VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP
Sbjct: 465 LQPYKF-DQKQVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKEL 523
Query: 387 XXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRK 444
HL+ VPDYLL + VK K S ++G + K
Sbjct: 524 QSLRHDKELHPARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPK 583
Query: 445 FRKSDPLKSF 454
K DPLK+F
Sbjct: 584 NGKVDPLKNF 593
>ZFIN|ZDB-GENE-040825-3 [details] [associations]
symbol:ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
56" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040825-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14810 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
EMBL:CR394525 EMBL:AY648812 IPI:IPI00491475 RefSeq:NP_001003876.1
UniGene:Dr.79779 STRING:Q6DRE7 Ensembl:ENSDART00000034555
GeneID:445399 KEGG:dre:445399 InParanoid:Q6DRE7 NextBio:20832104
Uniprot:Q6DRE7
Length = 557
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 165/453 (36%), Positives = 250/453 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++ S + L PDIV++TP + ++ LQ S SL++LV+DEAD
Sbjct: 110 VRVADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQNLQLHS---SLEMLVIDEAD 166
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E DLK L +P+ Q LMSAT + DV LK+L+LHNP L L + + D
Sbjct: 167 LLFSFGFEADLKNLLCHLPKIYQAFLMSATLNDDVQALKELVLHNPVTLKL-QGSQLPDS 225
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+QQF I C E DK +Q K L+F + +D ++RLKLFLE+F I +
Sbjct: 226 ---SQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVDRSYRLKLFLEQFSIPAC 282
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+LN+ELP +SR HI+ +FN G ++Y+IA+D+ + S + +K K K D
Sbjct: 283 VLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKD 342
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
E+GV RGIDF NV VINF+ P + Y+HR+GRT RA N G ++S +S E+ + E+
Sbjct: 343 KEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPGTALSFISHAELSMLSEV 402
Query: 313 KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 372
++ + D N + ++ P+ + +E RYR D +SVTK AV+E+R ++++ E+LNS
Sbjct: 403 ENALTGDSN--NCVLKPYEFRMEE-IEGFRYRCRDGMRSVTKQAVKEARLKEIKQELLNS 459
Query: 373 EKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGN 432
EKLK +FE NP H+++VP+YL+ + + R
Sbjct: 460 EKLKTYFEDNPRDLQLLRHDKDLHPAIIKPHMKNVPEYLIPTALKSLVNPLNQRRKRKKV 519
Query: 433 KNSSRRQGPRRK-FRKSDPLKSFSAEPTKRAGK 464
K+S +K +R +PLKSF +R K
Sbjct: 520 KSSGVMLSSFKKNYRGRNPLKSFRYAKKRRGEK 552
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 435 (158.2 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 97/213 (45%), Positives = 134/213 (62%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + +A LA PDIV++TP + L T L ++L LV+DEAD
Sbjct: 133 VRSVNLTQKVSDAVQKAMLADYPDIVVSTPARVIANLGTSALSL----ENLTHLVIDEAD 188
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYEDD+ ALS IPRG Q LMSAT +++VD LK L +P IL L + KD+
Sbjct: 189 LVLSYGYEDDINALSKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLED----KDD 244
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K ++ K +IF ID ++RLKLFLE+FGIKS
Sbjct: 245 H-GAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRSYRLKLFLEQFGIKSC 303
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 225
ILN+ELP NSR+H++EEFN G++D +IA D+ +
Sbjct: 304 ILNSELPVNSRIHVVEEFNKGVYDIIIAADEQE 336
Score = 313 (115.2 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 77/259 (29%), Positives = 128/259 (49%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
DD ++D+ +R K+ + + ++G+ RGIDF+NV V+NF++P ++ Y
Sbjct: 353 DDELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSY 412
Query: 282 VHRIGRTGRAYNTGASVSLVSP-DEMKIFEEIK-SFVGDDENEDSNIIAPFPLLAQNA-- 337
HRIGRTGR TG ++S V P D+ + S DE + II L
Sbjct: 413 THRIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIKRQAKLGHEVKP 472
Query: 338 -------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXXX 390
V++ RYR D +++T++A++E+RA+++R E++ SEKLK HFE NP
Sbjct: 473 YHFDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRHFEENPEELRQLR 532
Query: 391 XXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAM---GNKNSSRRQGPRRKFRK 447
HL+ +P+YL+ AK ++ + ++ G +N R+ R + R
Sbjct: 533 HDGELRAARIQPHLKHIPEYLMPAKGKKGISNEDVGFVSLRKTGPENRIRKARDRNRGRG 592
Query: 448 SDPLKSFSAEPTKRAGKGR 466
P + +P K +GR
Sbjct: 593 KKPGRKI--DPLKTFNRGR 609
Score = 56 (24.8 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 46/230 (20%), Positives = 88/230 (38%)
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
++N E+P N+ +H + +N G +++ DE ++ KS D E +
Sbjct: 304 ILNSELPVNSR--IHVV----EEFNKGVYDIIIAADEQEVLGVSKSRKSKDATEGDD--- 354
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRE-----SRAQDLRNE--ILN-----SEKLK 376
LL+ E+ A K++ +E SR D +N +LN S K
Sbjct: 355 --ELLSDEDEETSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSY 412
Query: 377 AHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEA--CKMVKLARAAMGNK- 433
H + P + + P + AK EA K++K +A +G++
Sbjct: 413 TH-RIGRTGRGGKTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIK-RQAKLGHEV 470
Query: 434 ---NSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 480
+ Q ++R SD L++ + + A +++E + +H
Sbjct: 471 KPYHFDMTQVDAFRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRH 520
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 171/450 (38%), Positives = 249/450 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ + DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLKLR---DSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 170 LLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLPG- 227
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 228 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN GL+D +IATD + + G R SK + KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGN-KAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +
Sbjct: 340 DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + E E + I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEDLLSG-EGE-APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP HL VPDYL+ A + K R
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPAALRGLVHPRKKRRKVPF 516
Query: 432 NKNSSR--RQGPRRKFRKSDPLKSFSAEPT 459
++ + + Q P R F+ +A+P+
Sbjct: 517 SRKAKKVKAQNPLRDFKHRGKKPKPAAKPS 546
>RGD|1303195 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box helicase 56"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005730 "nucleolus" evidence=ISO;TAS] [GO:0006364
"rRNA processing" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14810 HOGENOM:HOG000253015 CTD:54606
HOVERGEN:HBG051334 OrthoDB:EOG47H5PT UniGene:Rn.39458 EMBL:BC078919
IPI:IPI00949738 RefSeq:NP_001004211.1 STRING:Q6AYT6
Ensembl:ENSRNOT00000065205 GeneID:289780 KEGG:rno:289780
UCSC:RGD:1303195 InParanoid:Q6AYT6 NextBio:630330
Genevestigator:Q6AYT6 Uniprot:Q6AYT6
Length = 482
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 169/452 (37%), Positives = 250/452 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDE 70
++V ++++ ++ RA L PD+V+ TP + L+ LQ K+ DSL++LV+DE
Sbjct: 49 VRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILNH--LQQKNLKLRDSLELLVVDE 103
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
ADLL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 104 ADLLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLP 162
Query: 131 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
P +QQF + C +E DK ++ KAL+F NT++ +RL+LFLE+F I
Sbjct: 163 G---PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSI 219
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
S +LN ELP SR HI+ +FN GL+D +IATD + ++ G + K KA
Sbjct: 220 PSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG-----RGSKGDKA 274
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E
Sbjct: 275 S-DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSL 333
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + + I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+
Sbjct: 334 GKIEELLSGEGQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEEL 390
Query: 370 LNSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP HL +VPDYL+ A + K R
Sbjct: 391 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLVHPRKKRRKM 450
Query: 430 MGNKNSSR--RQGPRRKFRKSDPLKSFSAEPT 459
++ + + Q P R F+ +A+P+
Sbjct: 451 PFSRKAKKVKTQNPLRDFKHRGKKPKPTAKPS 482
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 169/452 (37%), Positives = 250/452 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS--DSLKILVLDE 70
++V ++++ ++ RA L PD+V+ TP + L+ LQ K+ DSL++LV+DE
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILNH--LQQKNLKLRDSLELLVVDE 167
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
ADLL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 168 ADLLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE-SQLP 226
Query: 131 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
P +QQF + C +E DK ++ KAL+F NT++ +RL+LFLE+F I
Sbjct: 227 G---PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSI 283
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
S +LN ELP SR HI+ +FN GL+D +IATD + ++ G + K KA
Sbjct: 284 PSCVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG-----RGSKGDKA 338
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E
Sbjct: 339 S-DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + + I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGEGQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP HL +VPDYL+ A + K R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPAALRGLVHPRKKRRKM 514
Query: 430 MGNKNSSR--RQGPRRKFRKSDPLKSFSAEPT 459
++ + + Q P R F+ +A+P+
Sbjct: 515 PFSRKAKKVKTQNPLRDFKHRGKKPKPTAKPS 546
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 158/437 (36%), Positives = 242/437 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ + DS+++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLR---DSMELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG- 227
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 228 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + +G H K K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATD---AEVLGPPVKGKH--RGKGPKRDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 340 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSGDSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP HL +VPDYL+ + K + +
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVHPHKKRKKPLA 516
Query: 432 NKNS--SRRQGPRRKFR 446
+K + ++ Q P R F+
Sbjct: 517 SKKAKKAKTQNPLRSFK 533
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 161/450 (35%), Positives = 245/450 (54%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L L+ + DSL++LV+DEAD
Sbjct: 112 IRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLR---DSLELLVVDEAD 168
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 169 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG- 226
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 227 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 284
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN GL+D +IATD + +G K K +A
Sbjct: 285 CVLNGELPLRSRCHIISQFNQGLYDCVIATD---AEVLGPPVKGKGKQRGKGPKGERAS- 340
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 341 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGK 400
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + + P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 401 IEELLSGENGAPA--LLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 457
Query: 372 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP HL +VPDYL+ + + K + +
Sbjct: 458 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVRPHKKRKKPLS 517
Query: 432 NKNSSRRQGPRRKFRKSDPLKSFSAEPTKR 461
K + +K + +PL+SF KR
Sbjct: 518 AKKA-------KKVKTQNPLRSFKHRGEKR 540
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 163/451 (36%), Positives = 241/451 (53%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E +
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-SQLPG- 227
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 228 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G + K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGPKGDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 340 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + EN I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSG-ENRGP-ILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP HL VPDYL+ + + K +
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRKKLSS 516
Query: 432 NKNSSRR---QGPRRKFRKSDPLKSFSAEPT 459
+ ++R Q P R F+ +A+P+
Sbjct: 517 SCRKAKRAKSQNPLRSFKHKGKKFRPTAKPS 547
>UNIPROTKB|J9NSI3 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00550000074946
Ensembl:ENSCAFT00000050014 OMA:YGYEDDL Uniprot:J9NSI3
Length = 445
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 163/449 (36%), Positives = 243/449 (54%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L+ S DSL++LVLDEAD
Sbjct: 13 IRVADVSAAEDSASQRAVLMEKPDIVVGTPS---RILNHLQQDSLVLRDSLELLVLDEAD 69
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E +
Sbjct: 70 LLFSFGFEEELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE-SQLPG- 127
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P ++QF + C +E DK ++ K L+F NT++ ++RL+LFLE+F I +
Sbjct: 128 --PDQLRQFQVVCETEEDKFLLLYALLKLSLIRGKCLLFVNTLERSYRLRLFLEQFSIPA 185
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD E S G R S+ +A
Sbjct: 186 CVLNGELPLCSRCHIISQFNQGFYDCVIATD----AEVLGSLVKGRRRGRGSRG-TRAS- 239
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V +V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 240 DPEAGVARGIDFHHVSSVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLDT 299
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + EN + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 300 IEELLSG-ENR-APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 356
Query: 372 SEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SE+LK +FE NP HL VPDYL+ + + K +
Sbjct: 357 SERLKTYFEDNPRDLQLLRHDLPLHPAIVKPHLGHVPDYLVPPALRGLVRPHKKRKKLAS 416
Query: 432 NK-NSSRRQGPRRKFRKSDPLKSFSAEPT 459
K ++ Q P R FR + +A P+
Sbjct: 417 KKVKKAKTQNPLRSFRHRKERRRPTAVPS 445
>FB|FBgn0001565 [details] [associations]
symbol:Hlc "Helicase" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0022008
EMBL:AE014298 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AF017777 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 GeneTree:ENSGT00550000074946 HSSP:P10081
FlyBase:FBgn0001565 EMBL:AY070624 PIR:T08433 RefSeq:NP_523434.2
UniGene:Dm.2805 SMR:Q9VRI0 STRING:Q9VRI0 EnsemblMetazoa:FBtr0077221
GeneID:33118 KEGG:dme:Dmel_CG1666 UCSC:CG1666-RA CTD:33118
InParanoid:Q9VRI0 OMA:THRIGRA GenomeRNAi:33118 NextBio:781998
Uniprot:Q9VRI0
Length = 560
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 164/477 (34%), Positives = 260/477 (54%)
Query: 3 LIELCKGQVQLKVVQLT-SSMPASDLRAALAGPPDIVIATPGCMPKCLSTG-VLQSKSFS 60
L+E C G+V ++V + SS R AL+ PDIV+ATP + G V+ K
Sbjct: 105 LVESC-GKV-VRVADIADSSNDTVTQRHALSESPDIVVATPANLLAYAEAGSVVDLKH-- 160
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
++ LV+DEADL+ +YGYE D K L +P Q +L+SAT + DV ++K L L+NP
Sbjct: 161 --VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVT 218
Query: 121 LTLPEVGDVKDEVIPKN-VQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFR 179
L L E E++P++ + I E DK ++ K++IF N+ID ++
Sbjct: 219 LKLEE-----PELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYK 273
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
++LFLE+FGI++ +LN+ELP N R+H + +FN G +D +IA+D+ EK GG
Sbjct: 274 VRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHM-EKP----GGK-- 326
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
S ++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S
Sbjct: 327 SATNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLS 385
Query: 300 LVSPDEMKIFEEIKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 357
VS E K+ + ++ + D E II + + VES RYRA+D ++ T++AV
Sbjct: 386 FVSMKESKVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAV 444
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQ 417
++R ++++ EILN EKLKA FE N SHL D+P+Y++ +
Sbjct: 445 HDTRIREIKIEILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALK 504
Query: 418 EACKMVKLARAAMGNKNSS--RRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKRE 470
++V + + +G + R+ + F + +DPL + + KR R K++
Sbjct: 505 ---RVVGTSSSPVGASEAKQPRQSAAKAAFERQVNDPLMASQVDFGKRRPAHRRKKK 558
>UNIPROTKB|H7C3E9 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC004938 HGNC:HGNC:18193 ProteinModelPortal:H7C3E9
Ensembl:ENST00000433257 Uniprot:H7C3E9
Length = 396
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 128/333 (38%), Positives = 185/333 (55%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 67 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 123
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E +
Sbjct: 124 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-SQLPG- 181
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 182 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 239
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G + K KA
Sbjct: 240 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGPKGDKAS- 293
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 294 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGK 353
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR 344
I+ + EN I+ P+ + +E RYR
Sbjct: 354 IEELLSG-ENRGP-ILLPYQFRMEE-IEGFRYR 383
>WB|WBGene00016073 [details] [associations]
symbol:C24H12.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0040007 GO:GO:0002119
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P10081 EMBL:FO080318 PIR:T32328
RefSeq:NP_740966.1 ProteinModelPortal:O17157 SMR:O17157
STRING:O17157 PaxDb:O17157 PRIDE:O17157 EnsemblMetazoa:C24H12.4a
GeneID:173432 KEGG:cel:CELE_C24H12.4 UCSC:C24H12.4a CTD:173432
WormBase:C24H12.4a InParanoid:O17157 NextBio:879633
ArrayExpress:O17157 Uniprot:O17157
Length = 634
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 135/432 (31%), Positives = 223/432 (51%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 216 VVVTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQC 271
Query: 97 LLMSATSSSDVDKLKKLILHNPYI-LTLPEVGDVKDEVIPKNVQQFWISC-SERDKXXXX 154
L+ SAT D+ LKKL + P I + L E GD+ + + Q+ ++C S+ ++
Sbjct: 272 LMTSATLKDDMTTLKKLFMTGPVITIKLTE-GDLPNS---DQLTQYQLTCGSDEERFAIL 327
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ ++++F NTID ++L L L FG+KS ILN+ +P NSR H++ +FN G
Sbjct: 328 VAMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGS 387
Query: 215 FDYLIATD--DTQ-TKEKDQ----SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+ +IA+D D +K K++ SDE D +K KK +KLD E GV RGIDF +V
Sbjct: 388 YQIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKESGVSRGIDFHHVS 445
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
V+NF+ P+ Y+HR+GRT R +N G ++S P E E+I+ + ++ ++
Sbjct: 446 NVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEI--NQQMGRKVL 503
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXX 387
P+ + +++ R + TK ++++R +++R E++ S L+ F N
Sbjct: 504 QPYEFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKL 562
Query: 388 XXXXX---XXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 444
PA + DV Y++ + A+ N RQ + K
Sbjct: 563 LMQTDCHPVMLKINSPA--IADVTSYMVPEALRGMDFSAPGAKNRRYNMGQKHRQKLKHK 620
Query: 445 FRKS--DPLKSF 454
F+K DPLK+F
Sbjct: 621 FQKKGKDPLKTF 632
>CGD|CAL0004220 [details] [associations]
symbol:orf19.3393 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0033680 "ATP-dependent DNA/RNA helicase activity" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064
EMBL:AACQ01000065 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_716643.1
RefSeq:XP_716703.1 ProteinModelPortal:Q5A4P9 STRING:Q5A4P9
GeneID:3641598 GeneID:3641657 KEGG:cal:CaO19.10896
KEGG:cal:CaO19.3393 KO:K14810 Uniprot:Q5A4P9
Length = 574
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 123/304 (40%), Positives = 176/304 (57%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+SS L + L P+I+I+TP + + L + ++K L +DE
Sbjct: 115 KINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEV 172
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L + +P + Q LMSAT + D+D LK+ P IL L E
Sbjct: 173 DLVLSFGYLDDLKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE---- 228
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D N+ Q++ +E DK ++ K + F N ID +RLKLFLE+FGI
Sbjct: 229 -DSANQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGI 287
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR------- 241
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T ++Q D E G D++
Sbjct: 288 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAET 347
Query: 242 KSKKHPKAKL--DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K KK K+K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S
Sbjct: 348 KPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Query: 300 LVSP 303
V P
Sbjct: 408 FVLP 411
Score = 361 (132.1 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 87/245 (35%), Positives = 128/245 (52%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
DD + ++D D+G K K K K D E+GV RG+DF+NV V+NF++P ++ Y
Sbjct: 330 DDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAY 389
Query: 282 VHRIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENEDSNIIAP 329
+HRIGRT RA G ++S V P E K E++ + ++++ I P
Sbjct: 390 IHRIGRTARAGKAGMALSFVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKP 449
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXX 389
+ VE RYRA+D ++VT+ AVRE+R ++L+NE++NSEKLK FE NP
Sbjct: 450 YQF-DMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASL 508
Query: 390 XXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSD 449
S L++VP YLL ++ K + NK R+G + +K D
Sbjct: 509 RHDKELHPARIQSQLKNVPQYLLPESARQDVKNIGFVPFHK-NKIHKHRKGKGKGRKKVD 567
Query: 450 PLKSF 454
PLKSF
Sbjct: 568 PLKSF 572
>UNIPROTKB|Q5A4P9 [details] [associations]
symbol:DBP9 "ATP-dependent RNA helicase DBP9"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004220 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL033391 EMBL:AACQ01000064 EMBL:AACQ01000065
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_716643.1 RefSeq:XP_716703.1
ProteinModelPortal:Q5A4P9 STRING:Q5A4P9 GeneID:3641598
GeneID:3641657 KEGG:cal:CaO19.10896 KEGG:cal:CaO19.3393 KO:K14810
Uniprot:Q5A4P9
Length = 574
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 123/304 (40%), Positives = 176/304 (57%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+SS L + L P+I+I+TP + + L + ++K L +DE
Sbjct: 115 KINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEV 172
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L + +P + Q LMSAT + D+D LK+ P IL L E
Sbjct: 173 DLVLSFGYLDDLKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE---- 228
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D N+ Q++ +E DK ++ K + F N ID +RLKLFLE+FGI
Sbjct: 229 -DSANQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGI 287
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR------- 241
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T ++Q D E G D++
Sbjct: 288 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAET 347
Query: 242 KSKKHPKAKL--DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K KK K+K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S
Sbjct: 348 KPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Query: 300 LVSP 303
V P
Sbjct: 408 FVLP 411
Score = 361 (132.1 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 87/245 (35%), Positives = 128/245 (52%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
DD + ++D D+G K K K K D E+GV RG+DF+NV V+NF++P ++ Y
Sbjct: 330 DDNEDGDEDTKDKGNAETKPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAY 389
Query: 282 VHRIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENEDSNIIAP 329
+HRIGRT RA G ++S V P E K E++ + ++++ I P
Sbjct: 390 IHRIGRTARAGKAGMALSFVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKP 449
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXXXXXX 389
+ VE RYRA+D ++VT+ AVRE+R ++L+NE++NSEKLK FE NP
Sbjct: 450 YQF-DMKQVEGFRYRADDAFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASL 508
Query: 390 XXXXXXXXXPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSD 449
S L++VP YLL ++ K + NK R+G + +K D
Sbjct: 509 RHDKELHPARIQSQLKNVPQYLLPESARQDVKNIGFVPFHK-NKIHKHRKGKGKGRKKVD 567
Query: 450 PLKSF 454
PLKSF
Sbjct: 568 PLKSF 572
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 111/276 (40%), Positives = 159/276 (57%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E +
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE-SQLPG- 227
Query: 133 VIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK ++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 228 --PDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G + K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKRRG-----RGPKGDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
D E GV RGIDF +V V+NF++P Y+HR GR
Sbjct: 340 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
>POMBASE|SPCC1494.06c [details] [associations]
symbol:SPCC1494.06c "ATP-dependent RNA helicase Dbp9
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1494.06c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ PIR:T41007
RefSeq:NP_588531.1 ProteinModelPortal:O60080 SMR:O60080
STRING:O60080 EnsemblFungi:SPCC1494.06c.1 GeneID:2538776
KEGG:spo:SPCC1494.06c NextBio:20799959 Uniprot:O60080
Length = 595
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 99/222 (44%), Positives = 134/222 (60%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L C ++ V SS R L PDIVIATP +++GVL D
Sbjct: 111 LTAFCSKHIRFINVATNSSDTVQ--RPLLLDLPDIVIATPSRCVVHVASGVLPL----DK 164
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LV+DEADL+LS+GY +D+K LS +PRG Q LMSAT S ++ L+KL+ NP+IL
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILA 224
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKL 182
VKD+ + Q+ + CSE+DK ++ K LIF N I+ +RLKL
Sbjct: 225 ------VKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKL 278
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
FLE+FG+KS +LN+ELP NSRLHILE++N GL+ +IATD++
Sbjct: 279 FLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDES 320
Score = 332 (121.9 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 101/310 (32%), Positives = 157/310 (50%)
Query: 166 KALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGL-F--DYLIA 220
K+L+ + + + RL + LE++ G+ I+ + ++ + +EE + F + +I+
Sbjct: 286 KSLVLNSELPVNSRLHI-LEQYNKGLYQIIIATD--ESGMMGEIEELENNVDFVEEEVIS 342
Query: 221 TDD-TQTKEKDQ-----SDEGGHVDSR-KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
TD T K KDQ +DE ++ KSKK + K D E+GV RG+DF+NV V+NF+
Sbjct: 343 TDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFD 402
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DEMKIFE--EIKSFVGDDEN----EDSNI 326
MP N Y+HRIGRT RA G ++S V P E+ + ++S D+ E I
Sbjct: 403 MPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQI 462
Query: 327 -IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPXX 385
+ P+ +N +++ RYR ED ++VT +AV +RA +L+ E+L SEKLK++F NP
Sbjct: 463 SLQPYSF-DKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLISEKLKSYFAENPDE 521
Query: 386 XXXXXXXXXXXXX--PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 443
HLR VP+YLL Q K + N+ +
Sbjct: 522 LLSLTHDTVSSVRLGHTQRHLRHVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKNP 581
Query: 444 KFRKSDPLKS 453
K R DPL+S
Sbjct: 582 KHRH-DPLRS 590
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 203 (76.5 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 57/213 (26%), Positives = 96/213 (45%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+QL+V + AAL PD+V+ATPG + L S SF+ ++++LVLD
Sbjct: 246 IQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHN----SPSFNLSNIEVLVLD 301
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L + D + L + + Q LL SAT + ++D+L + L P + + E D
Sbjct: 302 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 361
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
++ + ++ I Q ++F T R+++ L GI
Sbjct: 362 ALKLRQEFIR---IRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGI 418
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
K + + L Q R+ L +F D L++TD
Sbjct: 419 KVGQMQSSLTQGQRIESLSKFKKAEIDVLVSTD 451
Score = 177 (67.4 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 48/151 (31%), Positives = 78/151 (51%)
Query: 234 EGGHVDSRKSKKHPKAKLD---SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+G ++S K KA++D S RG+D + V TVIN MP++ Y+HR+GRT R
Sbjct: 429 QGQRIESLS--KFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTAR 486
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAK 350
A G S+SLV DE K+ +EI + D ++AP VE+ R R +++ +
Sbjct: 487 AGKAGRSISLVGEDERKLLKEIVNS-NADRTLKQRLVAP------EVVEAYRRRIDELEE 539
Query: 351 SVTKIAVRESRAQDLRNEILNSEKLKAHFEV 381
++ +I + ++LR + K + EV
Sbjct: 540 TIQQIDEEDRAEKELRIAEASMAKTQNALEV 570
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 206 (77.6 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 60/187 (32%), Positives = 95/187 (50%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + L T +S S S+ ++ LV DEAD +L G+++++ ++ +P+ Q
Sbjct: 128 DILIATPGRLLDLLRT---ESVSLSN-IETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT + D+ K+ K IL P ++ + E D+V +Q + + D+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-----EQL-VYGVDADRKRELT 237
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K+ L+FT T A L + K G+KS ++ + Q +R L EF G
Sbjct: 238 SFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 216 DYLIATD 222
LIATD
Sbjct: 298 RALIATD 304
Score = 157 (60.3 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RGID K + VIN+E+P NA YVHRIGRT RA N+G +VSLVSP E + I+ +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELL 365
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 206 (77.6 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 60/187 (32%), Positives = 95/187 (50%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + L T +S S S+ ++ LV DEAD +L G+++++ ++ +P+ Q
Sbjct: 128 DILIATPGRLLDLLRT---ESVSLSN-IETLVFDEADRMLDMGFKEEIDQITQYLPKTKQ 183
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT + D+ K+ K IL P ++ + E D+V +Q + + D+
Sbjct: 184 TLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDV-----EQL-VYGVDADRKRELT 237
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K+ L+FT T A L + K G+KS ++ + Q +R L EF G
Sbjct: 238 SFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKV 297
Query: 216 DYLIATD 222
LIATD
Sbjct: 298 RALIATD 304
Score = 157 (60.3 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RGID K + VIN+E+P NA YVHRIGRT RA N+G +VSLVSP E + I+ +
Sbjct: 308 RGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELL 365
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 223 (83.6 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 64/208 (30%), Positives = 101/208 (48%)
Query: 17 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 75
QL + L PD++IATPG + + + S SF+ D+L+ILVLDEAD +L
Sbjct: 402 QLVGGFSLREQENVLKKRPDVIIATPG---RFIDH-MRNSASFTVDTLEILVLDEADRML 457
Query: 76 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 135
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 458 EDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTKKNTAV 513
Query: 136 KNVQQFW-ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
VQ+F + DK + ++F A R+++ G+K+A L
Sbjct: 514 TLVQEFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAEL 573
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + Q R+ +E F G ++L+ATD
Sbjct: 574 HGSMSQEQRIKSVESFRDGNVNFLLATD 601
Score = 137 (53.3 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+ +K+ V
Sbjct: 605 RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV---VKAAVKA 661
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN---EILNSEKL 375
+ + + I++ ++ + + +A+D+ + + + E + L ++ E L
Sbjct: 662 GKAQGAKIVSR--VVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQAEMQVTKGENL 719
Query: 376 KAH 378
H
Sbjct: 720 IKH 722
Score = 43 (20.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 221 TDDTQTKEKDQSDEGGHVDS 240
+DD + +E+D ++ G +DS
Sbjct: 85 SDDEEEEEQDAGEDDGALDS 104
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 199 (75.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 63/221 (28%), Positives = 100/221 (45%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K + + +D ALA P ++ATPG + L Q F + L
Sbjct: 93 LRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLE----QKNLFLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ LKA++ A + Q L+ SAT S+++++ +L NP +
Sbjct: 149 ELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
+G E +++ Q C D K+ +IFT T RL
Sbjct: 209 A---IGTAHAE--HQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G +A L+ EL Q +R I+++F G L+ TD
Sbjct: 264 AKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTD 304
Score = 152 (58.6 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFL 365
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 199 (75.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 63/221 (28%), Positives = 100/221 (45%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K + + +D ALA P ++ATPG + L Q F + L
Sbjct: 93 LRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLE----QKNLFLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ LKA++ A + Q L+ SAT S+++++ +L NP +
Sbjct: 149 ELLILDEADRMLDLGFAPQLKAINEAADHKRRQTLMFSATLDHSEINEIAAALLKNPLHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
+G E +++ Q C D K+ +IFT T RL
Sbjct: 209 A---IGTAHAE--HQDISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G +A L+ EL Q +R I+++F G L+ TD
Sbjct: 264 AKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTD 304
Score = 152 (58.6 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 30/58 (51%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV P + F++++ F+
Sbjct: 308 RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFKKVQLFL 365
>GENEDB_PFALCIPARUM|PFL2010c [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014188
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195 KO:K01509
RefSeq:XP_001350806.2 ProteinModelPortal:Q8I511 IntAct:Q8I511
MINT:MINT-1630263 EnsemblProtists:PFL2010c:mRNA GeneID:811454
KEGG:pfa:PFL2010c EuPathDB:PlasmoDB:PF3D7_1241800
HOGENOM:HOG000283512 ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 181 (68.8 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 55/168 (32%), Positives = 79/168 (47%)
Query: 222 DDTQTKEKDQSDEGG----HVDSRKSKKHPKAKLDSE--FGVVRGIDFKNVHTVINFEMP 275
+D QT + SD + D K KL+ E F RG+DF +V V+NF+MP
Sbjct: 551 NDDQTLNEPLSDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMP 610
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 335
++ ++HRIGRT R N G +S V+ E+ E K F+ ED NI Q
Sbjct: 611 SDSETFIHRIGRTCRLNNKGKCISFVN--ELNYGE--KEFL-QKLIEDKNICTMIKKNIQ 665
Query: 336 -NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 382
N VE RYR E T ++ +++ + L S++LK F N
Sbjct: 666 YNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKELKDFFNTN 713
Score = 118 (46.6 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 34/96 (35%), Positives = 57/96 (59%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSD-----SLKILVLDEADLLLSYGYEDDLKALSAV 89
P I+I+TP K L T +++ K ++ +LKIL+LDEAD+L + ++ LK L++
Sbjct: 233 PTILISTP----KDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLKTLTSY 288
Query: 90 IPRGC----QCLLMSATSSSDVDKLKKLILHNP-YI 120
+P+ Q ++ SAT ++ + KL LHNP Y+
Sbjct: 289 LPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYV 324
Score = 103 (41.3 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219
K++IFT TI A+++K+FL + S+ILN P R +I+ FN F +LI
Sbjct: 404 KSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
>UNIPROTKB|Q8I511 [details] [associations]
symbol:PFL2010c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE014188 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K01509 RefSeq:XP_001350806.2
ProteinModelPortal:Q8I511 IntAct:Q8I511 MINT:MINT-1630263
EnsemblProtists:PFL2010c:mRNA GeneID:811454 KEGG:pfa:PFL2010c
EuPathDB:PlasmoDB:PF3D7_1241800 HOGENOM:HOG000283512
ProtClustDB:CLSZ2848517 Uniprot:Q8I511
Length = 878
Score = 181 (68.8 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 55/168 (32%), Positives = 79/168 (47%)
Query: 222 DDTQTKEKDQSDEGG----HVDSRKSKKHPKAKLDSE--FGVVRGIDFKNVHTVINFEMP 275
+D QT + SD + D K KL+ E F RG+DF +V V+NF+MP
Sbjct: 551 NDDQTLNEPLSDNNSCRTYNSDDENEKTDDTTKLNEEKDFLYSRGLDFYDVKCVVNFDMP 610
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 335
++ ++HRIGRT R N G +S V+ E+ E K F+ ED NI Q
Sbjct: 611 SDSETFIHRIGRTCRLNNKGKCISFVN--ELNYGE--KEFL-QKLIEDKNICTMIKKNIQ 665
Query: 336 -NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 382
N VE RYR E T ++ +++ + L S++LK F N
Sbjct: 666 YNIVEKYRYRVESTLNKCTNKKIKLFIQKEILYQSLKSKELKDFFNTN 713
Score = 118 (46.6 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 34/96 (35%), Positives = 57/96 (59%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSD-----SLKILVLDEADLLLSYGYEDDLKALSAV 89
P I+I+TP K L T +++ K ++ +LKIL+LDEAD+L + ++ LK L++
Sbjct: 233 PTILISTP----KDLCTHIIEKKKKNNLDILMNLKILILDEADVLHTQEFQSYLKTLTSY 288
Query: 90 IPRGC----QCLLMSATSSSDVDKLKKLILHNP-YI 120
+P+ Q ++ SAT ++ + KL LHNP Y+
Sbjct: 289 LPKKFNKKYQIVMASATLKRNILEKTKLFLHNPIYV 324
Score = 103 (41.3 bits), Expect = 3.8e-24, Sum P(3) = 3.8e-24
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219
K++IFT TI A+++K+FL + S+ILN P R +I+ FN F +LI
Sbjct: 404 KSIIFTTTIHDAYKIKIFLTYLNVSSSILNPNHPILIRQNIISAFNNSKFHFLI 457
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 188 (71.2 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 54/187 (28%), Positives = 90/187 (48%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + ++ GVL ++ VLDEAD +L G+ D++ + ++P Q
Sbjct: 138 DILVATPGRLLDLVNQGVLNLSR----VEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S ++ +L +LH+P ++ EV + + + +R +
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALI---EVA--RRNTAAARITHV-VHPVDRQRKRELL 247
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+FT T A RL LE G+ SA ++ Q +R+ L +F G
Sbjct: 248 SFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKI 307
Query: 216 DYLIATD 222
L+ATD
Sbjct: 308 RVLVATD 314
Score = 158 (60.7 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D + VINFE+P A YVHR+GRTGRA N G ++SLVS DE+++ +I+ +
Sbjct: 318 RGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLL 375
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 188 (71.2 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 54/187 (28%), Positives = 90/187 (48%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + ++ GVL ++ VLDEAD +L G+ D++ + ++P Q
Sbjct: 138 DILVATPGRLLDLVNQGVLNLSR----VEFFVLDEADRMLDMGFLPDIRRILKLLPESRQ 193
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S ++ +L +LH+P ++ EV + + + +R +
Sbjct: 194 NLLFSATFSKEIKELTDKLLHSPALI---EVA--RRNTAAARITHV-VHPVDRQRKRELL 247
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+FT T A RL LE G+ SA ++ Q +R+ L +F G
Sbjct: 248 SFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKI 307
Query: 216 DYLIATD 222
L+ATD
Sbjct: 308 RVLVATD 314
Score = 158 (60.7 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D + VINFE+P A YVHR+GRTGRA N G ++SLVS DE+++ +I+ +
Sbjct: 318 RGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLL 375
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 203 (76.5 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 62/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 139 ALAKKPHIIIATPGRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILK 194
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 195 VIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 249
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ QN RL L
Sbjct: 250 FKDSYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 308
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 309 KFKAKARSILLATD 322
Score = 141 (54.7 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 326 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 384
Score = 38 (18.4 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 167 ALIFTNTIDMAFRLKLFLE----KFGIKSAIL 194
AL+ T T ++AF++ E G+ SA++
Sbjct: 96 ALVLTPTRELAFQISEQFEALGSSIGVHSAVI 127
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 195 (73.7 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 64/220 (29%), Positives = 100/220 (45%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 63
E + L+ L + AL P +++ATPG + +S +K FS SL
Sbjct: 110 EALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSL 165
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K LVLDEAD LL+ +E L + IP + L SAT + V KL++ L NP +
Sbjct: 166 KYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI-- 223
Query: 124 PEVGDVKDEVIPKNVQQF-WISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKL 182
E K + QQ+ +++ +D + ++IFT T D L L
Sbjct: 224 -EAAS-KYSTVDTLKQQYRFVAAKYKD---CYLVYILSEMPESTSMIFTRTCDGTRFLAL 278
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G ++ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 279 VLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTD 318
Score = 148 (57.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 36/110 (32%), Positives = 63/110 (57%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ + +I+ +G
Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGK 381
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
E +P ++ V SL R + AK ++ + ++ES + R E
Sbjct: 382 KLPE-------YPA-EEDEVLSLLERVAE-AKKLSAMNMKESGGRKRRGE 422
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 227 KEKDQSDEGGHVDSRKSKK 245
K++ + GG+ D + SKK
Sbjct: 435 KDRGNKERGGNKDKKSSKK 453
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 215 (80.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 67/211 (31%), Positives = 106/211 (50%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K + + + + AL G DI++ATPG + +S+ ++ D +K LVLDEA
Sbjct: 115 EIKTLAVFGGVSVNIQMLALRGGVDILVATPGRLLDLISSNAIKL----DKVKTLVLDEA 170
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+ ++L AL A+ P+ Q LL SAT V L + +L+NP + L + D
Sbjct: 171 DRMLSLGFTEELTALLALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQL-QSADAST 229
Query: 132 EVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
V + V F ++ E+ ++ALIF N L L K GI +
Sbjct: 230 LV--QRV--FTVNKGEK---TAVLAHLIQQEQWRQALIFVNAKHHCEHLAEKLAKRGITA 282
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A+ + + Q+ R +L+ F AG + LIATD
Sbjct: 283 AVFHGDKGQSERSRVLDGFKAGDIEVLIATD 313
Score = 124 (48.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D + + VINF +P++ + Y+HRIGR+GRA G ++SL+ ++ F I+
Sbjct: 317 RGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIE 371
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 183 (69.5 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 59/196 (30%), Positives = 89/196 (45%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 296 AALRSGPDILIATPGRLIDHLHN----CPSFHLSSVEVLILDEADRMLDEYFEEQMKEII 351
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ R Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 352 RLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFV----NSNTDVAPFLRQEFIRIRPN 407
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 408 REGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEA 467
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 468 LRRFKDEQIDILVATD 483
Score = 159 (61.0 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 487 RGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 544
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
+ + A +L Q+ + R + E++ K V + E ++++ K K
Sbjct: 545 ----KTPVKAR--ILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQ 598
Query: 379 FE 380
E
Sbjct: 599 LE 600
Score = 51 (23.0 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 421 KMVKLARAAMGNKNSSRRQGPRRKFRKS--DP---------LKSFSAEPT----KRAGKG 465
+ VK ARA + ++ +GP+RK + S D LK + A P+ KR G
Sbjct: 682 RRVKRARALPEEEPAAAPKGPKRKKKVSVFDEELTNTSRKALKQYRAGPSFEDRKRLGMA 741
Query: 466 RMKREGRNGDDTGKHKKK 483
+ +R+G N ++K+K
Sbjct: 742 Q-RRKGGNFKSKSRYKRK 758
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 462
+T+E K KLA+A + R + R+KF + D + P +R+
Sbjct: 617 QTREERKKEKLAKALQEFDLALRGKKKRKKFMQ-DTQRKAQMTPEERS 663
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 183 (69.5 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 59/196 (30%), Positives = 89/196 (45%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 297 AALRSGPDILIATPGRLIDHLHN----CPSFHLSSVEVLILDEADRMLDEYFEEQMKEII 352
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ R Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 353 RLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFV----NSNTDVAPFLRQEFIRIRPN 408
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 409 REGDREAIVSALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEA 468
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 469 LRRFKDEQIDILVATD 484
Score = 159 (61.0 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 488 RGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 545
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
+ + A +L Q+ + R + E++ K V + E ++++ K K
Sbjct: 546 ----KTPVKAR--ILPQDVILKFREKIENLEKDVYAVLCLEREEREMQQSEAQINKAKKQ 599
Query: 379 FE 380
E
Sbjct: 600 LE 601
Score = 51 (23.0 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 421 KMVKLARAAMGNKNSSRRQGPRRKFRKS--DP---------LKSFSAEPT----KRAGKG 465
+ VK ARA + ++ +GP+RK + S D LK + A P+ KR G
Sbjct: 683 RRVKRARALPEEEPAAAPKGPKRKKKVSVFDEELTNTSRKALKQYRAGPSFEDRKRLGMA 742
Query: 466 RMKREGRNGDDTGKHKKK 483
+ +R+G N ++K+K
Sbjct: 743 Q-RRKGGNFKSKSRYKRK 759
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 462
+T+E K KLA+A + R + R+KF + D + P +R+
Sbjct: 618 QTREERKKEKLAKALQEFDLALRGKKKRKKFMQ-DTQRKAQMTPEERS 664
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 198 (74.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 65/194 (33%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G S S ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AMARGVDVLVACPGRLLDLAGQG---SVDLSH-VEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+P Q LL SAT S D+ L +LHNP I P V E I + V F + S +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRV--FRLPASHK 236
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
++ L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 ---RALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALA 293
Query: 209 EFNAGLFDYLIATD 222
+F AG L+ATD
Sbjct: 294 DFKAGEVRILVATD 307
Score = 149 (57.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 194 (73.4 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 308 KFKAKARSILLATD 321
Score = 137 (53.3 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
Score = 46 (21.3 bits), Expect = 3.5e-23, Sum P(3) = 3.5e-23
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 400 PASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPT 459
P +D +L + EA + ++ G K +R+ P D +
Sbjct: 387 PVFPTQDEEVMMLTERVSEAQRFARMELREHGEKKKRKREDPG----DDDDTEGAIGVRN 442
Query: 460 KRAGKGRMK-REGR 472
K AG G+MK R+GR
Sbjct: 443 KVAG-GKMKKRKGR 455
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 167 ALIFTNTIDMAFRLKLFLEKFG 188
AL+ T T ++AF++ E G
Sbjct: 95 ALVLTPTRELAFQISEQFEALG 116
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 191 (72.3 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 60/193 (31%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A++ D+++A PG + G S S ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AMSRGVDVLVACPGRLLDLAGQG---SVDLSH-VEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT S+D+ L +LHNP + EV V + ++Q +
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERI---EVTPPNTTV--ERIEQRVFRLAANH 235
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K ++ L+FT T A RL +L+K G+ + ++ QN+R L +
Sbjct: 236 KRSLLAHLITVGAWEQ-VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALAD 294
Query: 210 FNAGLFDYLIATD 222
F AG ++ATD
Sbjct: 295 FKAGDVRIMVATD 307
Score = 150 (57.9 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 311 RGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT-K 369
Query: 319 DENEDSNIIAPFPLLAQNAVE-SLRYRAEDVAKS 351
+ D +++ F + A A + +R R DV S
Sbjct: 370 QKIADGDLMG-FDITAVEAEKPEVRERP-DVRNS 401
Score = 42 (19.8 bits), Expect = 5.9e-23, Sum P(3) = 5.9e-23
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 450 PLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 485
P +A P A GR RNG TG K+ S
Sbjct: 511 PAAGGAARP---ANSGRPAGGARNGSGTGAPKRNGS 543
Score = 41 (19.5 bits), Expect = 7.4e-23, Sum P(3) = 7.4e-23
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 419 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGR 472
A + R A G +N S P+R S S+ P R G+ R +R R
Sbjct: 516 AARPANSGRPAGGARNGSGTGAPKRN-------GSGSSAPRSRDGQPRGRRPAR 562
Score = 40 (19.1 bits), Expect = 9.4e-23, Sum P(3) = 9.4e-23
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 426 ARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREG 471
AR A N RR + K ++ + + E R + + REG
Sbjct: 404 ARPAGDKNNGGRRDKGKDKGKEKPAAAAATGERPARQPREKKPREG 449
Score = 39 (18.8 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 427 RAAMGNKNSSRRQG-PR--RKFRKSDPLKSFSAEPTKRA 462
R G+ R G PR R R+ PL EP RA
Sbjct: 540 RNGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAVRA 578
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 189 (71.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 60/212 (28%), Positives = 102/212 (48%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L + +T +P + AL G DI++ATPG + + L G K ++S+ IL++DEAD
Sbjct: 102 LNIAIITGGVPYAPQEEALKGNIDILVATPGRLMEYLDKG----KFSAESVDILIIDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+L G+ +KA++ Q +L SAT S V + + +L++P + +V +
Sbjct: 158 RMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVIRFAREVLNDPIEI---DVDAPRK 214
Query: 132 EVIPKNVQQFWISCSE-RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E + Q WI ++ +D K+A++F T D+ L+ L + GI
Sbjct: 215 E--KAKIHQ-WIHLADDKDHKFALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIP 271
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A + ++ Q R L F G + L+ATD
Sbjct: 272 CAFMRGDMEQKKRFQALSRFTKGEVNVLLATD 303
Score = 147 (56.8 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
SR +K L ++ RGID ++ VINF+MP++A Y+HRIGRTGRA G ++S
Sbjct: 289 SRFTKGEVNVLLATDVAA-RGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS 347
Query: 300 LVSPDEMKIFEEIKSFV 316
L +M+I +I+ ++
Sbjct: 348 LAEAHDMRIVGKIERYI 364
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 189 (71.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 60/212 (28%), Positives = 102/212 (48%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L + +T +P + AL G DI++ATPG + + L G K ++S+ IL++DEAD
Sbjct: 102 LNIAIITGGVPYAPQEEALKGNIDILVATPGRLMEYLDKG----KFSAESVDILIIDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+L G+ +KA++ Q +L SAT S V + + +L++P + +V +
Sbjct: 158 RMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVIRFAREVLNDPIEI---DVDAPRK 214
Query: 132 EVIPKNVQQFWISCSE-RDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E + Q WI ++ +D K+A++F T D+ L+ L + GI
Sbjct: 215 E--KAKIHQ-WIHLADDKDHKFALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQLLQAGIP 271
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A + ++ Q R L F G + L+ATD
Sbjct: 272 CAFMRGDMEQKKRFQALSRFTKGEVNVLLATD 303
Score = 147 (56.8 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
SR +K L ++ RGID ++ VINF+MP++A Y+HRIGRTGRA G ++S
Sbjct: 289 SRFTKGEVNVLLATDVAA-RGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAIS 347
Query: 300 LVSPDEMKIFEEIKSFV 316
L +M+I +I+ ++
Sbjct: 348 LAEAHDMRIVGKIERYI 364
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 211 (79.3 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 65/210 (30%), Positives = 98/210 (46%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K + + + L PDIV+ATPG M L + S D L +L+LDEAD
Sbjct: 267 IKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSM--SVDLDD-LAVLILDEAD 323
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL G+ ++ L + P+ Q +L SAT + +V +L KL L+ P L+ + +
Sbjct: 324 RLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA-DPSARRPP 382
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + V + I + + K +IF+ T A RLK+ G+K+A
Sbjct: 383 GLTEEVVR--IRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAA 440
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L+ L Q RL LE F D+LIATD
Sbjct: 441 ELHGNLTQAQRLDSLELFRKQEVDFLIATD 470
Score = 132 (51.5 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 63/233 (27%), Positives = 94/233 (40%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V TVIN+ P+ YVHR+GRT RA G +V+ V+ + + + I VG
Sbjct: 474 RGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGS 533
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA-QDLRNEILNSEKLKA 377
S +I ++ + + ED +V A R+ RA + E +E +
Sbjct: 534 KLK--SRVIPEQSIVKWSQIID---EMEDQYSAVIS-AERDERALRKAEMEFAKAENMLE 587
Query: 378 HFE---VNPXXXXXXXXXXXXXXXPPASHLRDVP--DYLLDAKTQEACKMVKLARAAMGN 432
H + P P L+ A E KM K R
Sbjct: 588 HRDEIYARPKRTWFMTEKEKKLVAQAEKDSAGNPAGGELVSADRAEDLKM-KEKRKRERE 646
Query: 433 KNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 484
KN R++ RRK + + L+ E + +G KR GR+ GK KKK+
Sbjct: 647 KNLPRKK--RRKLEAAREMLEDNEGEEEEEDEEGDEKR-GRS---RGKDKKKQ 693
Score = 43 (20.2 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 102 TSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
T+S D +K+ K I H P +++ E + ++E
Sbjct: 91 TTSID-EKISKAIQHRPVPISINEEEEEEEE 120
Score = 41 (19.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
+D + +E+++ +EG D ++ + K K E +G+ K++
Sbjct: 665 EDNEGEEEEEDEEG---DEKRGRSRGKDKKKQETDK-KGLTLKDL 705
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 201 (75.8 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 63/211 (29%), Positives = 103/211 (48%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
+ + + + + A + + L DI++ATPG + VL F D L +LVLDE
Sbjct: 105 LDISSMAMYGGVDAQEQKQRLIWGVDILVATPGRLLDMTHQRVLH---F-DELDMLVLDE 160
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ DD+ + +P Q LL SAT S +V L K +H P ++ +G
Sbjct: 161 ADRMLDMGFIDDINKIIERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEIS---IG--A 215
Query: 131 DEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
D+ ++Q+ ++ + +K Q+ ALIF T A +L LEK GI
Sbjct: 216 DKASKPKIEQWLVTVDKANKSALLSHIITTQNWQQ-ALIFIETKHGAAKLVSQLEKRGIV 274
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
+ +++ Q+ R IL +F +G +L+AT
Sbjct: 275 AESIHSGRAQDIREKILNDFKSGKIKFLVAT 305
Score = 131 (51.2 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D + VIN+++P Y+HRIGRTGRA +G ++SLVS D + I+S +G
Sbjct: 310 RGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFRELCAIESRLG 368
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 193 (73.0 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 61/192 (31%), Positives = 90/192 (46%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G D+++ATPG + L Q+ D ++ILVLDEAD +L G+ D++ + +
Sbjct: 122 LRGGVDVLVATPG---RLLDLEH-QNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL 177
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q LL SAT S D+ L + +LHNP + + D+V Q +R +
Sbjct: 178 PAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQV----TQHVHFVDKKRKR 233
Query: 151 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
Q L+FT T A L L K GI+SA ++ Q +R L +F
Sbjct: 234 ELLSHMIGKGNWQQ--VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291
Query: 211 NAGLFDYLIATD 222
+G L+ATD
Sbjct: 292 KSGDIRVLVATD 303
Score = 141 (54.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D + + V+N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLL 364
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 195 (73.7 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 308 KFKAKARSILLATD 321
Score = 137 (53.3 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
Score = 40 (19.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 167 ALIFTNTIDMAFRLKLFLE----KFGIKSAIL 194
AL+ T T ++AF++ E G++SA++
Sbjct: 95 ALVLTPTRELAFQISEQFEALGSSIGVQSAVI 126
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 194 (73.4 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 308 KFKAKARSILLATD 321
Score = 137 (53.3 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 167 ALIFTNTIDMAFRLKLFLEKFG 188
AL+ T T ++AF++ E G
Sbjct: 95 ALVLTPTRELAFQISEQFEALG 116
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 194 (73.4 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 250
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 251 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 309
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 310 KFKAKARSILLATD 323
Score = 137 (53.3 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 327 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 385
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 167 ALIFTNTIDMAFRLKLFLEKFG 188
AL+ T T ++AF++ E G
Sbjct: 97 ALVLTPTRELAFQISEQFEALG 118
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 197 (74.4 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 62/213 (29%), Positives = 97/213 (45%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
QLK+V + + +L D+++ATPG + L++ L+ S VLDEA
Sbjct: 113 QLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVS----AFVLDEA 168
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDV 129
D +LS G+ ++L+ + A +PR Q LL SAT +V L +LH P Y L + +
Sbjct: 169 DRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTI 228
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ VI N R++ +ALIF + + L L K GI
Sbjct: 229 EQRVITVN----------REQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGI 278
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + + + Q +R +L+ F G LIATD
Sbjct: 279 SAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311
Score = 132 (51.5 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RGID + VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 315 RGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 197 (74.4 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 62/213 (29%), Positives = 97/213 (45%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
QLK+V + + +L D+++ATPG + L++ L+ S VLDEA
Sbjct: 113 QLKIVAAFGGVSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVS----AFVLDEA 168
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP--YILTLPEVGDV 129
D +LS G+ ++L+ + A +PR Q LL SAT +V L +LH P Y L + +
Sbjct: 169 DRMLSLGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTI 228
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ VI N R++ +ALIF + + L L K GI
Sbjct: 229 EQRVITVN----------REQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGI 278
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + + + Q +R +L+ F G LIATD
Sbjct: 279 SAEVFHGDKAQGARTRVLDGFKNGEISVLIATD 311
Score = 132 (51.5 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RGID + VINF++P++ A Y+HRIGR+GRA G +V+L+S +E F I+
Sbjct: 315 RGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIE 369
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 197 (74.4 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 59/219 (26%), Positives = 100/219 (45%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 63
E G + ++ V + M AL+ P +++ TPG + L +K FS +L
Sbjct: 135 EAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLEN----TKGFSLKNL 190
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K L++DEAD LL + + + +IP + LL SAT +S V+KL++ LH P + +
Sbjct: 191 KYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAV 250
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
D +I + + + +D +IF T++ RL +
Sbjct: 251 SSKFSTVDTLIQRYL---FFPFKHKDTYLVYLVNELAG---NSIIIFARTVNDTQRLAIL 304
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G + L+ +L Q++RL L +F +G L+ATD
Sbjct: 305 LRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATD 343
Score = 133 (51.9 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 231 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
QS+ G ++ K K ++ L + RG+D V VIN+++P ++ Y+HR+GRT R
Sbjct: 321 QSNRLGALN--KFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTAR 378
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
A G S++LV+ +++ F I++ +G E
Sbjct: 379 AGRAGKSIALVTQYDLEPFLRIEATIGKKMQE 410
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 194 (73.4 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 164 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 219
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 220 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 274
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 275 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 333
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 334 KFKAKARSILLATD 347
Score = 137 (53.3 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 21/59 (35%), Positives = 42/59 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 351 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 409
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 167 ALIFTNTIDMAFRLKLFLE----KFGIKSAIL 194
AL+ T T ++AF++ E G++SA++
Sbjct: 121 ALVLTPTRELAFQISEQFEALGSSIGVQSAVI 152
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 184 (69.8 bits), Expect = 5.2e-22, Sum P(3) = 5.2e-22
Identities = 57/189 (30%), Positives = 89/189 (47%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG L +L + D L+IL+LDEAD LL G++D++ + P
Sbjct: 312 PDVVIATPGR----LIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTN 367
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
Q +L SAT + +V L KL L P + + + V + + V+ S+R
Sbjct: 368 RQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILL 427
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
Q +IF + RL++ +K+A L+ L Q R L++F G
Sbjct: 428 SLCTRVFN--QGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDG 485
Query: 214 LFDYLIATD 222
+YL+A+D
Sbjct: 486 QVNYLLASD 494
Score = 158 (60.7 bits), Expect = 5.2e-22, Sum P(3) = 5.2e-22
Identities = 42/127 (33%), Positives = 69/127 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V TVIN+ MP N A Y+HR+GRT RA G S S ++ ++ K+ ++I V
Sbjct: 498 RGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI---VTK 554
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN--EILN-SEKL 375
N+ A ++Q+ V R R E++ + + I E + DLR + L+ +EK+
Sbjct: 555 ARNK-----AKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKI 609
Query: 376 KAHFEVN 382
++ + N
Sbjct: 610 ISNADAN 616
Score = 37 (18.1 bits), Expect = 5.2e-22, Sum P(3) = 5.2e-22
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 446 RKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 476
RK + F E + + R ++ G +GDD
Sbjct: 680 RKQRRHRQFKEEFEREQQEERKRKGGDDGDD 710
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 177 (67.4 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 55/187 (29%), Positives = 93/187 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + L+ L++ S +K LVLDEAD +L G+ D++ L + Q
Sbjct: 143 DVLVATPGRLLEHLA---LRNVDLSQ-VKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQ 198
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
L+ SAT S V L +L +P +++ + ++ K +W++ ER +
Sbjct: 199 TLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKI--KQAV-YWVT-EERKRELLSE 254
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
Q L+F T + A L L+ GIK+A+ + + Q +R LE+F+ G
Sbjct: 255 LIGVNNWQQ--VLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKV 312
Query: 216 DYLIATD 222
L+ATD
Sbjct: 313 RVLVATD 319
Score = 152 (58.6 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
Identities = 37/118 (31%), Positives = 63/118 (53%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D ++ V+NF +P YVHR+GRTGRA +G ++SLVSP + + E I+ +
Sbjct: 323 RGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLI-- 380
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAK-SVTKIAVRESRAQDLRNEILNSEKL 375
E + I+AP N +E+ Y+ V + S + + + Q+L + + + L
Sbjct: 381 -ERKFERIVAPG--YEFNRLEASEYQEATVKRDSKNRYRAAQEKNQNLAKKDVKIKSL 435
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 198 (74.8 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 61/212 (28%), Positives = 104/212 (49%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L V L+ + S+LR PD++IATPG + + + S SF+ D+++ILVLDEA
Sbjct: 359 LAVGGLSLKVQESELRLR----PDVIIATPG---RFIDH-MRNSASFAVDTVEILVLDEA 410
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + +P+ Q +L SAT +S VD L ++ L+ P L + D +
Sbjct: 411 DRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMV----DSQK 466
Query: 132 EVIPKNVQQFW-ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ + Q+F + +K ++ +IF +A ++ G+
Sbjct: 467 KTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLYTERVIIFFRQKKIAHHARIIFGLLGLS 526
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A L+ + Q R+ +E F G +L+ATD
Sbjct: 527 CAELHGSMSQIQRIQSVEAFRDGKVSFLLATD 558
Score = 137 (53.3 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVG 317
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G +++L + PD + +K+
Sbjct: 562 RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKA 621
Query: 318 DDENEDSNIIAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESRAQDLR---NEILNSE 373
S II + A ++ L E V + + V ++R N I +
Sbjct: 622 QGAKISSRIIDAADADSWQAKIDELEDEVEAVMREEKEEKVLAQADMEMRKGENMIRYED 681
Query: 374 KLKA 377
+KA
Sbjct: 682 DIKA 685
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 176 (67.0 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 55/187 (29%), Positives = 93/187 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + L V Q+ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DVLVATPG---RLLDL-VQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
L+ SAT S ++ +L K ++++P E+ V+Q WI ++ +
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPV-----EISVTPRNAAATTVKQ-WICPVDKTQKSALL 234
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+F+ T A RL L + I +A ++ Q +R L +F +G
Sbjct: 235 IQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEV 294
Query: 216 DYLIATD 222
L+ATD
Sbjct: 295 RVLVATD 301
Score = 155 (59.6 bits), Expect = 7.8e-22, Sum P(2) = 7.8e-22
Identities = 57/220 (25%), Positives = 92/220 (41%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V+NF++P YVHRIGRTGRA TG +VSLVS +E+K+ ++I+ +
Sbjct: 305 RGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLINR 364
Query: 319 D-ENEDSNIIAPFPLLAQNAV--ESLRYRAEDVA-----KSVTKIAVRESRAQDLRNEIL 370
E ++ +P L + + + + + VA +S K A R +D +
Sbjct: 365 VLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSGSGRDTQGNRE 424
Query: 371 NSEKLKAHFEVNPXXXXXXXXXXXXXXXPPASH-LRD-------VPDYLLDAKTQEACKM 422
NS++ + N P + H RD AK +
Sbjct: 425 NSQRQNSASSRNSNEHNNTEAAVARSPKPKSKHPQRDGGTANSATAGNNAKAKPHSGAQQ 484
Query: 423 VKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRA 462
A + + N RRQ + K R K S +P + +
Sbjct: 485 RSHAERSEKSNNDGRRQ-EQPKGRNPQSAKPASNQPKQHS 523
Score = 54 (24.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 164 QKKALIFTNTIDMAFRLKLFLEKFG----IKSAILNAELPQNSRLHILEEFNAGLFDYLI 219
Q +AL+ T T ++A ++ +E +G ++SA++ +P N +++ L G+ D L+
Sbjct: 73 QTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRH---GV-DVLV 128
Query: 220 AT 221
AT
Sbjct: 129 AT 130
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 186 (70.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 60/196 (30%), Positives = 90/196 (45%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 87
AAL PD++IATPG + L + SF S ++IL+LDEAD +L +E+ +K +
Sbjct: 317 AALRAGPDVLIATPGRLIDHLHN----TPSFELSQIEILILDEADRMLDEYFEEQMKEII 372
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT S +V L + L P + + + +V P Q+F I +
Sbjct: 373 RMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFV----NSNTDVAPYLRQEFVRIRPN 428
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ Q ++FT T A R+ + L G+K L+ L Q RL
Sbjct: 429 KEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLES 488
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 489 LRRFKDEQIDILVATD 504
Score = 148 (57.2 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/54 (55%), Positives = 35/54 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D + V TVINF MP YVHR+GRT RA G SVSLV E K+ +EI
Sbjct: 508 RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEI 561
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 186 (70.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 55/187 (29%), Positives = 87/187 (46%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + L G L + L LV DEAD +L G+ D+++A+ +P Q
Sbjct: 127 DVLIATPGRLLDHLRQGALNL----NQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQ 182
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT + K +L +P + EV K ++Q + + D+
Sbjct: 183 TLLFSATLDDSIFSFSKNLLRDPKRI---EVA--KPNTTAAQIEQR-VYAIDSDRKTEFV 236
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ LIF+ T +L L K G+ + + +L Q +R +L+EF GL
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 216 DYLIATD 222
L+ATD
Sbjct: 297 QVLVATD 303
Score = 138 (53.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D + VINFE+P A Y+HRIGRTGRA + G +++L S ++ + EE+++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 186 (70.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 55/187 (29%), Positives = 87/187 (46%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + L G L + L LV DEAD +L G+ D+++A+ +P Q
Sbjct: 127 DVLIATPGRLLDHLRQGALNL----NQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQ 182
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT + K +L +P + EV K ++Q + + D+
Sbjct: 183 TLLFSATLDDSIFSFSKNLLRDPKRI---EVA--KPNTTAAQIEQR-VYAIDSDRKTEFV 236
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ LIF+ T +L L K G+ + + +L Q +R +L+EF GL
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 216 DYLIATD 222
L+ATD
Sbjct: 297 QVLVATD 303
Score = 138 (53.6 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D + VINFE+P A Y+HRIGRTGRA + G +++L S ++ + EE+++ +
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLL 364
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 195 (73.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 58/189 (30%), Positives = 100/189 (52%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P Q
Sbjct: 142 IVVGTPG---RVFDN--IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 196
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 197 VVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKYECL 251
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT L KL +KF + SAI + +LPQ R I++EF +G
Sbjct: 252 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIYS-DLPQQERDTIMKEFRSG 309
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 310 SSRILISTD 318
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 317 GDDENEDSNIIA 328
E + IA
Sbjct: 380 STQIEELPSDIA 391
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 195 (73.7 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 58/189 (30%), Positives = 100/189 (52%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P Q
Sbjct: 142 IVVGTPG---RVFDN--IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 196
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 197 VVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKYECL 251
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT L KL +KF + SAI + +LPQ R I++EF +G
Sbjct: 252 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIYS-DLPQQERDTIMKEFRSG 309
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 310 SSRILISTD 318
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 379
Query: 317 GDDENEDSNIIA 328
E + IA
Sbjct: 380 STQIEELPSDIA 391
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 182 (69.1 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 58/196 (29%), Positives = 88/196 (44%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 334 AALRAAPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 389
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 390 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPN 445
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 446 REGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 505
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 506 LRRFKDEQIDILVATD 521
Score = 154 (59.3 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 31/54 (57%), Positives = 36/54 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D + V TVINF MP YVHR+GRT RA G SVSLV DE K+ +EI
Sbjct: 525 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Score = 40 (19.1 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 457
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 654 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 697
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 184 (69.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 55/199 (27%), Positives = 100/199 (50%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
D++A GP +V+ TPG + + L++ D +K+ VLDEAD +LS G+ + +
Sbjct: 134 DMKALQDGP-QVVVGTPGRVHDMIQRRFLKT----DGMKMFVLDEADEMLSRGFTEQIYD 188
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ ++P+ Q +L+SAT DV ++ + +P + + KDE+ + ++QF+I+
Sbjct: 189 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVK-----KDELTLEGIKQFYIAV 243
Query: 146 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSR 203
+ + +A+IF NT L KL F + + ++ ++ Q R
Sbjct: 244 EKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSA--MHGDMDQAQR 301
Query: 204 LHILEEFNAGLFDYLIATD 222
I++EF +G LIATD
Sbjct: 302 DLIMKEFRSGSSRVLIATD 320
Score = 139 (54.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ D++++ EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 380
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 192 (72.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 54/187 (28%), Positives = 93/187 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + L ++ FS L++ +LDEAD +L G+ D+K L +P+ Q
Sbjct: 132 DVLVATPG---RLLDLYNQRAVKFSQ-LEVFILDEADRMLDMGFIRDIKKLMTALPKDRQ 187
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S ++ L K +++NP +++ D ++ K Q W++ ++ +
Sbjct: 188 NLLFSATFSPEIRALAKGMVNNPLEISV----DAENSTAEKVTQ--WLTAVDKKRKPAVL 241
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+FT T A +L LE G+ +A ++ Q +R L F G
Sbjct: 242 THLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSV 301
Query: 216 DYLIATD 222
L+ATD
Sbjct: 302 KILVATD 308
Score = 133 (51.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+NF++P YVHRIGRT RA NTG ++SLV DE+ + I+ +
Sbjct: 312 RGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVI-- 369
Query: 319 DENEDSNIIAPF 330
++ + +I F
Sbjct: 370 QQHIERKVIEKF 381
Score = 37 (18.1 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFG 188
+ALI T T ++A ++ +E +G
Sbjct: 82 RALILTPTRELAAQISESIEVYG 104
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 189 (71.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 53/186 (28%), Positives = 89/186 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + Q + + ++++VLDEAD +L G+ + + + +P Q
Sbjct: 125 DVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S V +L K + +P+ E+ ++ N+ Q W+ ++D
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPH-----EISIAANQASKSNISQ-WLITVDKDTKSALL 234
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ALIF T A +L LEK GI + ++ Q R +LE+F +G
Sbjct: 235 SHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 216 DYLIAT 221
YL+AT
Sbjct: 295 KYLVAT 300
Score = 133 (51.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 245 KHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K K GV RGID + V+N+++P A YVHRIGRTGRA G ++S VS
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSK 349
Query: 304 DEMKIFEEIKSFVG 317
D K I+S +G
Sbjct: 350 DNFKNLCMIESRLG 363
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 189 (71.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 53/186 (28%), Positives = 89/186 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + Q + + ++++VLDEAD +L G+ + + + +P Q
Sbjct: 125 DVLVATPGRLMDLYG----QRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S V +L K + +P+ E+ ++ N+ Q W+ ++D
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPH-----EISIAANQASKSNISQ-WLITVDKDTKSALL 234
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ALIF T A +L LEK GI + ++ Q R +LE+F +G
Sbjct: 235 SHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294
Query: 216 DYLIAT 221
YL+AT
Sbjct: 295 KYLVAT 300
Score = 133 (51.9 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 33/74 (44%), Positives = 42/74 (56%)
Query: 245 KHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K K GV RGID + V+N+++P A YVHRIGRTGRA G ++S VS
Sbjct: 290 KSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSK 349
Query: 304 DEMKIFEEIKSFVG 317
D K I+S +G
Sbjct: 350 DNFKNLCMIESRLG 363
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 182 (69.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 58/196 (29%), Positives = 88/196 (44%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 303 AALRAAPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFVRIRPN 414
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 415 REGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 474
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 475 LRRFKDEQIDILVATD 490
Score = 151 (58.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 494 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 551
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+ + A +L Q+ + R + E + K V + E+ ++L+
Sbjct: 552 ----KAPVKAR--ILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQ 593
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 173 (66.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 61/216 (28%), Positives = 98/216 (45%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
G + +T +D ALA P ++ATPG + L L F + L+ LVL
Sbjct: 102 GGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVL 157
Query: 69 DEADLLLSYGYEDDLKAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEV 126
DEAD +L G+ +L+ + +A R Q L+ SAT +DV+ + +L+ P + + V
Sbjct: 158 DEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIG-V 216
Query: 127 GDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK 186
G + + I Q F++ C D ++ +IFT T RL L +
Sbjct: 217 GSEEHKDI---TQHFYL-CDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQ 272
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+K+ L+ L Q R I+ +F +F L+ TD
Sbjct: 273 NNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTD 308
Score = 152 (58.6 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 173 (66.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 61/216 (28%), Positives = 98/216 (45%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
G + +T +D ALA P ++ATPG + L L F + L+ LVL
Sbjct: 102 GGLSYTATLITGGENFNDQVKALARGPRFIVATPGRLADHLDHRSL----FLEGLETLVL 157
Query: 69 DEADLLLSYGYEDDLKAL-SAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEV 126
DEAD +L G+ +L+ + +A R Q L+ SAT +DV+ + +L+ P + + V
Sbjct: 158 DEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIG-V 216
Query: 127 GDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK 186
G + + I Q F++ C D ++ +IFT T RL L +
Sbjct: 217 GSEEHKDI---TQHFYL-CDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQ 272
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+K+ L+ L Q R I+ +F +F L+ TD
Sbjct: 273 NNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTD 308
Score = 152 (58.6 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D V VINF+MP++ YVHR+GRTGRA N G ++SLV P + + F+ +++F+
Sbjct: 312 RGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 193 (73.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 62/205 (30%), Positives = 108/205 (52%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYG 78
+SM + D+ A +G IV+ TPG + L +++ + F +D +K+ +LDEAD +LS G
Sbjct: 129 TSM-SDDIEAFRSGV-QIVVGTPG---RVLD--MIERRYFKTDKVKMFILDEADEMLSSG 181
Query: 79 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 138
+++ + + ++P Q +L+SAT DV ++ ++NP + + KDE+ + +
Sbjct: 182 FKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVK-----KDELTLEGI 236
Query: 139 QQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTID-MAFRLKLFLEKFGIKSAILNAE 197
+QF+I+ D +A+IF NT + F E+ SAI +A+
Sbjct: 237 KQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAI-HAD 295
Query: 198 LPQNSRLHILEEFNAGLFDYLIATD 222
LPQ R I++EF +G LI+TD
Sbjct: 296 LPQAERDTIMKEFRSGSSRILISTD 320
Score = 127 (49.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ + EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 193 (73.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 62/205 (30%), Positives = 108/205 (52%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYG 78
+SM + D+ A +G IV+ TPG + L +++ + F +D +K+ +LDEAD +LS G
Sbjct: 129 TSM-SDDIEAFRSGV-QIVVGTPG---RVLD--MIERRYFKTDKVKMFILDEADEMLSSG 181
Query: 79 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 138
+++ + + ++P Q +L+SAT DV ++ ++NP + + KDE+ + +
Sbjct: 182 FKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVK-----KDELTLEGI 236
Query: 139 QQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTID-MAFRLKLFLEKFGIKSAILNAE 197
+QF+I+ D +A+IF NT + F E+ SAI +A+
Sbjct: 237 KQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAI-HAD 295
Query: 198 LPQNSRLHILEEFNAGLFDYLIATD 222
LPQ R I++EF +G LI+TD
Sbjct: 296 LPQAERDTIMKEFRSGSSRILISTD 320
Score = 127 (49.8 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ + EI+ F
Sbjct: 322 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 181 (68.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 56/214 (26%), Positives = 100/214 (46%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K L + + ALA P +V+ +PG + L +K F+ S+K ++D
Sbjct: 214 IGVKTCVLVGGIDSMSQSLALAKKPHVVVGSPGRVLHHLE----HTKGFNLRSIKYFIMD 269
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD L S +E+++ + VIP+ L SAT +S V KL++ L NP + +
Sbjct: 270 EADRLFSADFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQVAS---- 325
Query: 130 KDEVIPKNVQQF-WISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFG 188
K + + +QQ+ ++ +D + +IFT+T + ++ + L G
Sbjct: 326 KYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNL---TIIFTSTCASSTKIAMMLRNLG 382
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ +N ++ Q RL L +F G L+ATD
Sbjct: 383 FGAIPINGDMDQGKRLASLNKFKQGTKSILVATD 416
Score = 146 (56.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 31/85 (36%), Positives = 56/85 (65%)
Query: 233 DEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
D+G + S K K+ K+ L + RG+D +V VIN+++P N+ YVHR+GRT RA
Sbjct: 393 DQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARA 452
Query: 292 YNTGASVSLVSPDEMKIFEEIKSFV 316
N+G ++++V+ ++++++ I+ FV
Sbjct: 453 GNSGRAITIVTQYDVEMYQRIE-FV 476
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 182 (69.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 55/199 (27%), Positives = 99/199 (49%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
D+ A GP IV+ TPG + + VL++ D +K+ +LDEAD +LS G+ + +
Sbjct: 136 DMNALREGP-QIVVGTPGRIHDMIQRRVLKT----DQMKMFILDEADEMLSRGFTEQIYD 190
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ ++P+ Q +L+SAT DV ++ + +P + + K E+ + ++QF+I+
Sbjct: 191 IFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVK-----KQELTLEGIKQFYIAV 245
Query: 146 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSR 203
+ + +A+IF NT L KL F + + ++ ++ Q R
Sbjct: 246 EKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSA--MHGDMEQAQR 303
Query: 204 LHILEEFNAGLFDYLIATD 222
I++EF +G LIATD
Sbjct: 304 DVIMKEFRSGSSRVLIATD 322
Score = 139 (54.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ D++++ EI+ F
Sbjct: 324 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 382
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 182 (69.1 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 58/196 (29%), Positives = 88/196 (44%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 324 AALRAAPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 379
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 380 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFVRIRPN 435
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 436 REGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 495
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 496 LRRFKDEQIDILVATD 511
Score = 151 (58.2 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 39/108 (36%), Positives = 57/108 (52%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 515 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAA-- 572
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+ + A +L Q+ + R + E + K V + E+ ++L+
Sbjct: 573 ----KAPVKAR--ILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQ 614
Score = 40 (19.1 bits), Expect = 2.3e-21, Sum P(3) = 2.3e-21
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 457
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 646 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 689
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 181 (68.8 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 58/196 (29%), Positives = 88/196 (44%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 300 AALRAAPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 355
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 356 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPN 411
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 412 REGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEA 471
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 472 LRRFKDEQIDILVATD 487
Score = 151 (58.2 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 491 RGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
Score = 40 (19.1 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 457
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 620 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKDAKKKGEMTAE 663
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 181 (68.8 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 58/196 (29%), Positives = 88/196 (44%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 303 AALRAAPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEII 358
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+ Q +L SAT + +V L + L NP + + + +V P Q+F I +
Sbjct: 359 RMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRPN 414
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++FT T A R+ + L G++ L+ L Q RL
Sbjct: 415 REGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEA 474
Query: 207 LEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 475 LRRFKDEQIDILVATD 490
Score = 150 (57.9 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D + V TVINF MP YVHR+GRT RA G SVSLV +E K+ +EI
Sbjct: 494 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Score = 41 (19.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 223 DTQTKEKDQSDEGGHVDSRKSK---KHPKAKLDSEF 255
+ +T +D+ +EG V RK K K+ A + +F
Sbjct: 20 EPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDF 55
Score = 40 (19.1 bits), Expect = 3.4e-21, Sum P(3) = 3.4e-21
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS-FSAE 457
+T+E K K+A+A + R + R+KF K K +AE
Sbjct: 623 QTKEERKKEKIAKALQEFDLALRGKKKRKKFMKEAKKKGEMTAE 666
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 179 (68.1 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 61/187 (32%), Positives = 89/187 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + L+ L S S S+ LVLDEAD +L G+ D++ + + + Q
Sbjct: 126 DIIVATPGRLLEHLTACNL---SLS-SVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT SS V KL ++ P +++ + D V Q +R K
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTAD-----TVSQVVYPVEQRRKRELLS 236
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
Q+ L+FT T D A L L GI S +++ E Q SR L EF +G
Sbjct: 237 ELIGKKNWQQ-VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKV 295
Query: 216 DYLIATD 222
L+AT+
Sbjct: 296 RVLVATE 302
Score = 142 (55.0 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D ++ V+NF++P A YVHRIGRTGRA +G ++S VS +E + +I+ +G
Sbjct: 306 RGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLIG 364
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 163 (62.4 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 49/211 (23%), Positives = 91/211 (43%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K + P + + L IV+ TPG + + G L + LK LV+DEA
Sbjct: 100 RIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIEKGTLSL----ERLKYLVIDEA 155
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L+ G+ D ++A+ +P +L SAT DV++L + ++ P + + G D
Sbjct: 156 DEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTD 215
Query: 132 EVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ + E +K +IF T + + L++
Sbjct: 216 KI-----EHTLFEVREEEKLSLLKDVTTIENPDS-CIIFCRTQENVDHVYRQLDRVNYPC 269
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
++ + Q R ++++F G F YL+ATD
Sbjct: 270 DKIHGGMVQEDRFGVMDDFRKGKFRYLVATD 300
Score = 161 (61.7 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 231 QSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
Q D G +D RK K D RGID N+ VIN+++P YVHR GRTG
Sbjct: 278 QEDRFGVMDDFRKGKFRYLVATDV---AARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RA N+G +++ ++P E + EEI++++G
Sbjct: 335 RAGNSGKAITFITPYEDRFLEEIEAYIG 362
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 163 (62.4 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 49/211 (23%), Positives = 91/211 (43%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K + P + + L IV+ TPG + + G L + LK LV+DEA
Sbjct: 100 RIKAAAIYGKSPFARQKLELKQKTHIVVGTPGRVLDHIEKGTLSL----ERLKYLVIDEA 155
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L+ G+ D ++A+ +P +L SAT DV++L + ++ P + + G D
Sbjct: 156 DEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTD 215
Query: 132 EVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ + E +K +IF T + + L++
Sbjct: 216 KI-----EHTLFEVREEEKLSLLKDVTTIENPDS-CIIFCRTQENVDHVYRQLDRVNYPC 269
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
++ + Q R ++++F G F YL+ATD
Sbjct: 270 DKIHGGMVQEDRFGVMDDFRKGKFRYLVATD 300
Score = 161 (61.7 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 231 QSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
Q D G +D RK K D RGID N+ VIN+++P YVHR GRTG
Sbjct: 278 QEDRFGVMDDFRKGKFRYLVATDV---AARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RA N+G +++ ++P E + EEI++++G
Sbjct: 335 RAGNSGKAITFITPYEDRFLEEIEAYIG 362
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 186 (70.5 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 56/220 (25%), Positives = 107/220 (48%)
Query: 5 ELCK-GQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
EL K G V+ ++V+ + AL P +++ TPG + ++ G L+ +
Sbjct: 89 ELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTLRL----EH 144
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+ +VLDEAD +L+ G+ +D++A+ + +P Q LL SAT + ++ + ++ P ++
Sbjct: 145 VHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVK 204
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKL 182
+ K+ +P N+QQ+++ E+ K + A++F T L
Sbjct: 205 VK----AKEMTVP-NIQQYYLEVHEKKKFDILTRLLDIQAPEL-AIVFGRTKRRVDELAE 258
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G + ++ +L Q RL +L +F G + L+ATD
Sbjct: 259 ALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATD 298
Score = 134 (52.2 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
RG+D V V NF++PQ+ YVHRIGRTGRA TG +++ V+P E+
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 182 (69.1 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 59/206 (28%), Positives = 93/206 (45%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 76
+ M D L P +++ATPG + L +K FS +LK LV+DEAD LL
Sbjct: 225 IVGGMDMMDQARDLMRKPHVIVATPGRIMDHLE----HTKGFSLKNLKYLVMDEADRLLD 280
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
+ L + VIP L SAT ++ ++KL++ LHNP + + D
Sbjct: 281 MDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTAD----- 335
Query: 137 NVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 196
N+ Q + ++ K + K ++FT T+ A R L G + L+
Sbjct: 336 NLVQSMMLVNDGYKNTILIHLLNEF-MGKSIIVFTRTVAHAQRTALLARILGFNAVPLHG 394
Query: 197 ELPQNSRLHILEEFNAGLFDYLIATD 222
+L Q+ RL L +F + + L+ATD
Sbjct: 395 QLSQSQRLGSLNKFKSNQANILVATD 420
Score = 139 (54.0 bits), Expect = 7.8e-21, Sum P(2) = 7.8e-21
Identities = 23/59 (38%), Positives = 43/59 (72%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S+SL++ +++++ I+S +G
Sbjct: 424 RGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLG 482
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 180 (68.4 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 77
+ MP L+ P D ++ATPG + L +S S L++LVLDEAD +L
Sbjct: 107 ILGGMPYHAQLRLLSAPVDFIVATPGRLVDLLDR---RSLDLS-RLELLVLDEADRMLDM 162
Query: 78 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137
G+ DD+ ++A P Q LL +AT S + +L +L P + + + +
Sbjct: 163 GFSDDVDRIAAASPATRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHI---- 218
Query: 138 VQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
Q+ ++ K + ++A+IF+ T A L L L+ G +A L+ +
Sbjct: 219 EQRLHVADDLHHKNRLLRHLITDESL-RRAIIFSATKRDAENLALELKAQGHSAAALHGD 277
Query: 198 LPQNSRLHILEEFNAGLFDYLIATD 222
+PQN+R + G L+ATD
Sbjct: 278 MPQNARNRTIAAMKQGRIRLLVATD 302
Score = 138 (53.6 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D + VINF++P+ A YVHRIGRTGRA +G ++S S +E+ I+ ++G
Sbjct: 306 RGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIG 364
Score = 44 (20.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 78 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 127
GY + +A +PR + + + AT+ + K +L L+ P G
Sbjct: 20 GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQG 69
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 209 (78.6 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 62/190 (32%), Positives = 97/190 (51%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG L + S SFS +++LV+DEAD +L G++D+L + ++IP+
Sbjct: 251 PDIVIATPGR----LIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKH 306
Query: 94 C-QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q LL SAT ++ + L +L L P + + D V K +QQF + +RD+
Sbjct: 307 KRQTLLFSATMNTRIQDLIQLSLQKPVRIMI----DPPKSVASKLLQQF-VRIRKRDQLK 361
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
V + ++F + A RL++ L G+K + L+ L Q RL ++ F +
Sbjct: 362 PALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKS 421
Query: 213 GLFDYLIATD 222
LI TD
Sbjct: 422 LEVPVLICTD 431
Score = 108 (43.1 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D + VIN++MP+ Y+HR+GRT RA G S++ V
Sbjct: 435 RGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 441 PRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 485
P+R + K + ++ + K K R E R D+ +KK K+
Sbjct: 557 PKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRK-DEGRSYKKTKT 600
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 209 (78.6 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 62/190 (32%), Positives = 97/190 (51%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG L + S SFS +++LV+DEAD +L G++D+L + ++IP+
Sbjct: 251 PDIVIATPGR----LIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKH 306
Query: 94 C-QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q LL SAT ++ + L +L L P + + D V K +QQF + +RD+
Sbjct: 307 KRQTLLFSATMNTRIQDLIQLSLQKPVRIMI----DPPKSVASKLLQQF-VRIRKRDQLK 361
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
V + ++F + A RL++ L G+K + L+ L Q RL ++ F +
Sbjct: 362 PALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKS 421
Query: 213 GLFDYLIATD 222
LI TD
Sbjct: 422 LEVPVLICTD 431
Score = 108 (43.1 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D + VIN++MP+ Y+HR+GRT RA G S++ V
Sbjct: 435 RGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
Score = 41 (19.5 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 441 PRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKKS 485
P+R + K + ++ + K K R E R D+ +KK K+
Sbjct: 557 PKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRK-DEGRSYKKTKT 600
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 192 (72.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 59/221 (26%), Positives = 102/221 (46%)
Query: 5 ELCK--GQ-VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
++CK G+ ++++V+ T D L P +++ TPG + GV K S
Sbjct: 217 QVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCS- 275
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+LV+DEAD LLS ++ ++ L + +P Q L+ SAT V K L NPY++
Sbjct: 276 ---VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVI 332
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
L DE+ K + QF+ ER K + + ++IF N+++ L
Sbjct: 333 NL------MDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQ-SIIFCNSVNRVELLA 385
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q+ R + +F G L+ TD
Sbjct: 386 KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 426
Score = 125 (49.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+NA Y+HR+GR+GR + G +V+L++ ++ I+ +G
Sbjct: 430 RGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGT 489
Query: 319 D 319
+
Sbjct: 490 E 490
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 179 (68.1 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 61/198 (30%), Positives = 93/198 (46%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PDIVIATPG L + + SF+ DS+++L+LDEAD +L + + +K +
Sbjct: 274 AVLRQNPDIVIATPGR----LIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEII 329
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+ Q +L SAT S V L + L P +V ++ + N++Q +I E
Sbjct: 330 NSCCKTRQTMLFSATMSEQVKDLAAVSLDKPI-----KVFVNNNQQVAFNLRQEFIRIRE 384
Query: 148 RDKXXXXXXXXXXXXVQK---KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
DK + ++F T A RL + L G+++ L+ L Q RL
Sbjct: 385 -DKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRL 443
Query: 205 HILEEFNAGLFDYLIATD 222
L++F D LIATD
Sbjct: 444 ESLKKFKEEQIDVLIATD 461
Score = 142 (55.0 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 35/92 (38%), Positives = 49/92 (53%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V TVINF MP Y+HR+GRT RA G SVSL E KI +K + +
Sbjct: 465 RGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKI---VKDIIKN 521
Query: 319 DENEDSNIIAPFPLLAQ--NAVESLRYRAEDV 348
E+ N I P ++ + N + SL +++
Sbjct: 522 AESTIKNRIIPPEIIEKYRNKLTSLEPEIQNI 553
Score = 45 (20.9 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 452 KSFSAEPTKRAGKGRMKREGRN--GDDTGKHKKKK 484
K+ S + T +AGK + + G+N G K KKK
Sbjct: 749 KASSVKLTNKAGKNKFNK-GKNFGGPRHAKKDKKK 782
Score = 40 (19.1 bits), Expect = 4.2e-20, Sum P(3) = 4.2e-20
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 414 AKTQEACKMVKLARAAMGNKNSSRR--QGPRRKFRKSDPLKSFSAEPTKRAG-KGRMKRE 470
AKT++ ++ K R +G N R Q +++ + D L + + K +G KG+ K
Sbjct: 564 AKTEQ--QLSKTERKLLGQTNERRGWFQTKQQREAEKDRLALTTGDEDKASGGKGKGKTA 621
Query: 471 GR--------NGDD 476
G+ +G+D
Sbjct: 622 GKRKRPEYGGDGED 635
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 182 (69.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 55/187 (29%), Positives = 92/187 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ F D L+ILVLDEAD +L G+ D+ + ++P Q
Sbjct: 125 DILVATPGRLMDLYNQNAVK---F-DQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S+++ +L K +++NP +++ + V+Q + K
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA-----RTVEQCIYPADVKKKPDMLV 235
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
Q+ L+F T A RL +L + G+ +A ++ Q +R L +F AG
Sbjct: 236 KLVKEGNWQQ-VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
Query: 216 DYLIATD 222
L+ATD
Sbjct: 295 RILVATD 301
Score = 133 (51.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RGID + V+NFE+P+ A YVHRIGRTGRA G ++SLVS E
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 182 (69.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 55/187 (29%), Positives = 92/187 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ F D L+ILVLDEAD +L G+ D+ + ++P Q
Sbjct: 125 DILVATPGRLMDLYNQNAVK---F-DQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT S+++ +L K +++NP +++ + V+Q + K
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA-----RTVEQCIYPADVKKKPDMLV 235
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
Q+ L+F T A RL +L + G+ +A ++ Q +R L +F AG
Sbjct: 236 KLVKEGNWQQ-VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
Query: 216 DYLIATD 222
L+ATD
Sbjct: 295 RILVATD 301
Score = 133 (51.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RGID + V+NFE+P+ A YVHRIGRTGRA G ++SLVS E
Sbjct: 305 RGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 181 (68.8 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 54/194 (27%), Positives = 95/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I++ATPG + L +K F+ +LK L++DEAD +L+ +E +L +
Sbjct: 158 ALARRPHIIVATPGRLVDHLEN----TKGFNLKALKFLIMDEADRILNMDFEVELDKILK 213
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P +++ D N++Q +I +
Sbjct: 214 VIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVD-----NLKQHYIFVPNK 268
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K A++F T ++ + L + G+++ L+ ++ Q RL L
Sbjct: 269 YKETYLVYLLNEHA-GNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLN 327
Query: 209 EFNAGLFDYLIATD 222
+F + + L+ TD
Sbjct: 328 KFKSKAREILVCTD 341
Score = 135 (52.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 29/93 (31%), Positives = 56/93 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V VIN++MP + YVHR+GRT RA +G ++++V+ +++ +++I++ +G
Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEANLGK 404
Query: 319 --DENED-SNIIAPFPLLAQNAVESLRYRAEDV 348
DE + N + Q A E+ R +++
Sbjct: 405 KLDEYKCVENEVMVLVERTQEATENARIEMKEM 437
Score = 57 (25.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 411 LLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKRE 470
+L +TQEA + AR M + ++ G +R R++D + E R G
Sbjct: 418 VLVERTQEATEN---ARIEMKEMDEKKKSGKKR--RQNDDFGD-TEESGGRFKMGIKSMG 471
Query: 471 GRNGDDTGKHKKKKSL 486
GR G G+ KKK +
Sbjct: 472 GRGGSGGGRGGKKKKM 487
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 185 (70.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 61/219 (27%), Positives = 98/219 (44%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+EL K +QLKV+ T D L G +VIATPG + + GV + +
Sbjct: 132 VELSK-HIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKM----EHC 186
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K LVLDEAD LLS ++ L L +P+ Q +L SAT + V + +H PY + L
Sbjct: 187 KTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINL 246
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ V Q++ E+ K + + ++IF N+ L
Sbjct: 247 ME------ELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQ-SIIFCNSTQRVELLAKK 299
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G +++++ QN R + +F G L+ +D
Sbjct: 300 ITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Score = 128 (50.1 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
+ RGID + V+ VINF+ P+NA Y+HRIGR+GR + G +++L++ ++ I+
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIE 396
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 185 (70.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 61/219 (27%), Positives = 98/219 (44%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+EL K +QLKV+ T D L G +VIATPG + + GV + +
Sbjct: 132 VELSK-HIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKM----EHC 186
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K LVLDEAD LLS ++ L L +P+ Q +L SAT + V + +H PY + L
Sbjct: 187 KTLVLDEADKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINL 246
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ V Q++ E+ K + + ++IF N+ L
Sbjct: 247 ME------ELTLLGVTQYYAFVQEKQKVHCLNTLFRKLQINQ-SIIFCNSTQRVELLAKK 299
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G +++++ QN R + +F G L+ +D
Sbjct: 300 ITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSD 338
Score = 128 (50.1 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
+ RGID + V+ VINF+ P+NA Y+HRIGR+GR + G +++L++ ++ I+
Sbjct: 340 LTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIE 396
>UNIPROTKB|B4DRZ7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
UniGene:Hs.656037 HGNC:HGNC:25628 EMBL:AC012184 EMBL:AK299504
IPI:IPI01009735 SMR:B4DRZ7 STRING:B4DRZ7 Ensembl:ENST00000443119
UCSC:uc002eys.3 Uniprot:B4DRZ7
Length = 388
Score = 199 (75.1 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 122 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 177
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 178 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 232
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 233 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 292
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 293 EKVLVTTN 300
Score = 108 (43.1 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 304 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 363
Query: 312 IK 313
I+
Sbjct: 364 IQ 365
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 190 (71.9 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 59/194 (30%), Positives = 93/194 (47%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK L +DEAD LL + + L +
Sbjct: 160 ALGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIR 215
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++PR L SAT S+ V+ L++ L NP +++ K + + +Q +I +
Sbjct: 216 ILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSS----KYQTV-STLQSSYICIPHK 270
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Q A+IFT T+ R+ L G + L+ +L Q++RL L
Sbjct: 271 HKNLYLVYLLNEFAGQS-AIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALG 329
Query: 209 EFNAGLFDYLIATD 222
+F + D L+ATD
Sbjct: 330 KFRSRSRDILVATD 343
Score = 122 (48.0 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D +V V NF++P ++ Y+HR+GRT RA +G ++S V+ +++++ I+
Sbjct: 347 RGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIE 401
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 172 (65.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 58/209 (27%), Positives = 97/209 (46%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L + + + A+ + L D+++ATPG + L ++ F D + +LVLDEAD
Sbjct: 102 LTAMAMYGGVDAAPQKKRLIEGVDLLVATPG---RLLDMYTQRAIRF-DEVSVLVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ +D+ + +P Q LL SAT S V L K + P + + E+ +
Sbjct: 158 RMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKTAI--PDAIEI-EIS--RKN 212
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q W++ ++D+ +ALIF T A +L LEK GI +
Sbjct: 213 AASTQIDQ-WLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAE 271
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++ Q R +L +F AG +L+AT
Sbjct: 272 AFHSGRSQAIREQLLIDFKAGKVPFLVAT 300
Score = 142 (55.0 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
GVV RGID + VIN+++P A Y+HRIGRTGRA N G ++S VS D+ +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFR 353
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 172 (65.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 58/209 (27%), Positives = 97/209 (46%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L + + + A+ + L D+++ATPG + L ++ F D + +LVLDEAD
Sbjct: 102 LTAMAMYGGVDAAPQKKRLIEGVDLLVATPG---RLLDMYTQRAIRF-DEVSVLVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ +D+ + +P Q LL SAT S V L K + P + + E+ +
Sbjct: 158 RMLDMGFIEDINNIIEKLPEQRQNLLFSATLSKQVKALAKTAI--PDAIEI-EIS--RKN 212
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q W++ ++D+ +ALIF T A +L LEK GI +
Sbjct: 213 AASTQIDQ-WLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAE 271
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++ Q R +L +F AG +L+AT
Sbjct: 272 AFHSGRSQAIREQLLIDFKAGKVPFLVAT 300
Score = 142 (55.0 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
GVV RGID + VIN+++P A Y+HRIGRTGRA N G ++S VS D+ +
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFR 353
>UNIPROTKB|I3L352 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:25628 EMBL:AC012184
Ensembl:ENST00000575878 Uniprot:I3L352
Length = 396
Score = 199 (75.1 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 130 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 185
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 186 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 240
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 241 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 300
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 301 EKVLVTTN 308
Score = 108 (43.1 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 312 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 371
Query: 312 IK 313
I+
Sbjct: 372 IQ 373
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 168 (64.2 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 66/216 (30%), Positives = 97/216 (44%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 67
KG +LK+V + L G DI+IATPG + L ++S F +++LV
Sbjct: 106 KG-TELKIVAVYGGTSMKVQLNHLRGGVDILIATPG---RLLDHAHVKSL-FLGKVEVLV 160
Query: 68 LDEADLLLSYGYEDDL-KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
LDEAD +L G+ DL + L + P Q L SAT S + + I+ +P EV
Sbjct: 161 LDEADRMLDMGFMPDLQRVLRRLSPLR-QTLFFSATFDSKIKAVAYRIMRDPI-----EV 214
Query: 127 GDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK 186
+ VQQ ++ K Q+ L+FT T + L L+
Sbjct: 215 QVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQ-VLVFTKTRQGSDALAEELKL 273
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
GIK+ +N + Q +R L++F AG LIATD
Sbjct: 274 DGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309
Score = 144 (55.7 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 42/141 (29%), Positives = 68/141 (48%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+K Q +D K+ K +A + ++ RG+D + V+N++MP A YVHRIGR
Sbjct: 284 DKSQGARQKALDDFKAGK-VRALIATDVAA-RGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD-ENEDSNIIAPFPLL-AQNAVESLRYRA 345
TGRA G +VSL+S DE E I+ + E P P++ +N+ R+
Sbjct: 342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRS 401
Query: 346 EDVAKSVTKIAVRESRAQDLR 366
+ K ++ + R + R
Sbjct: 402 SEKRKLKAQLKIHAQRGKKAR 422
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 168 (64.2 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 66/216 (30%), Positives = 97/216 (44%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILV 67
KG +LK+V + L G DI+IATPG + L ++S F +++LV
Sbjct: 106 KG-TELKIVAVYGGTSMKVQLNHLRGGVDILIATPG---RLLDHAHVKSL-FLGKVEVLV 160
Query: 68 LDEADLLLSYGYEDDL-KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
LDEAD +L G+ DL + L + P Q L SAT S + + I+ +P EV
Sbjct: 161 LDEADRMLDMGFMPDLQRVLRRLSPLR-QTLFFSATFDSKIKAVAYRIMRDPI-----EV 214
Query: 127 GDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEK 186
+ VQQ ++ K Q+ L+FT T + L L+
Sbjct: 215 QVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQ-VLVFTKTRQGSDALAEELKL 273
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
GIK+ +N + Q +R L++F AG LIATD
Sbjct: 274 DGIKAVSINGDKSQGARQKALDDFKAGKVRALIATD 309
Score = 144 (55.7 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 42/141 (29%), Positives = 68/141 (48%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+K Q +D K+ K +A + ++ RG+D + V+N++MP A YVHRIGR
Sbjct: 284 DKSQGARQKALDDFKAGK-VRALIATDVAA-RGLDIAQLEQVVNYDMPFKAEDYVHRIGR 341
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD-ENEDSNIIAPFPLL-AQNAVESLRYRA 345
TGRA G +VSL+S DE E I+ + E P P++ +N+ R+
Sbjct: 342 TGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRS 401
Query: 346 EDVAKSVTKIAVRESRAQDLR 366
+ K ++ + R + R
Sbjct: 402 SEKRKLKAQLKIHAQRGKKAR 422
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 205 (77.2 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 62/192 (32%), Positives = 94/192 (48%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P+++++TPG + L+ +K F+ +LK LV DEAD LLS +E + L +
Sbjct: 271 LAKKPNVIVSTPGRILDHLNN----TKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLI 326
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P L SAT + +V KLKK L NP + EV + K + ++ + I +
Sbjct: 327 LPPNRITFLFSATMTKNVAKLKKACLKNPVKV---EVSN-KYSTVSTLIETY-IFLPLKY 381
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + +IFTNT A +L F G+KS L+ +L QN RL L
Sbjct: 382 KYTYLSSLCFHYQT-RNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNS 440
Query: 210 FNAGLFDYLIAT 221
F ++ LI+T
Sbjct: 441 FKVNKYNILIST 452
Score = 108 (43.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 231 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
Q+ ++S K K+ + ++ G RG+D +++ VINF++ + Y+HR+GRT R
Sbjct: 431 QNQRLSSLNSFKVNKY-NILISTQVGA-RGLDLQDIKIVINFDIC-SCKEYIHRVGRTAR 487
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV-A 349
A +G S++ V+ +++ F I E + + I F L +N V L Y + + A
Sbjct: 488 AGRSGKSITFVTQYDVENFLAI-------EKQLNKKIDKFTDLDENDV--LLYHEQTIEA 538
Query: 350 KSVTKIAVRESRAQDLRNE 368
+++I ++E++ +N+
Sbjct: 539 LRLSEIEMKENQELYKKNK 557
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 205 (77.2 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 62/192 (32%), Positives = 94/192 (48%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P+++++TPG + L+ +K F+ +LK LV DEAD LLS +E + L +
Sbjct: 271 LAKKPNVIVSTPGRILDHLNN----TKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLI 326
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P L SAT + +V KLKK L NP + EV + K + ++ + I +
Sbjct: 327 LPPNRITFLFSATMTKNVAKLKKACLKNPVKV---EVSN-KYSTVSTLIETY-IFLPLKY 381
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + +IFTNT A +L F G+KS L+ +L QN RL L
Sbjct: 382 KYTYLSSLCFHYQT-RNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNS 440
Query: 210 FNAGLFDYLIAT 221
F ++ LI+T
Sbjct: 441 FKVNKYNILIST 452
Score = 108 (43.1 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 37/139 (26%), Positives = 74/139 (53%)
Query: 231 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
Q+ ++S K K+ + ++ G RG+D +++ VINF++ + Y+HR+GRT R
Sbjct: 431 QNQRLSSLNSFKVNKY-NILISTQVGA-RGLDLQDIKIVINFDIC-SCKEYIHRVGRTAR 487
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV-A 349
A +G S++ V+ +++ F I E + + I F L +N V L Y + + A
Sbjct: 488 AGRSGKSITFVTQYDVENFLAI-------EKQLNKKIDKFTDLDENDV--LLYHEQTIEA 538
Query: 350 KSVTKIAVRESRAQDLRNE 368
+++I ++E++ +N+
Sbjct: 539 LRLSEIEMKENQELYKKNK 557
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 175 (66.7 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 58/193 (30%), Positives = 95/193 (49%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L K F+ ++K LV+DEAD +L+ +E +L + V
Sbjct: 176 LAKKPHIIIATPGRLVDHLEN----MKGFNLKAIKYLVMDEADRILNMDFEVELDKILKV 231
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+PR + L SAT + V KL++ L +P + EV + K + + + +QQ ++ +
Sbjct: 232 LPRERRTFLFSATMTKKVKKLQRASLKDPVKV---EVSN-KYQTV-EQLQQSYLFIPVKY 286
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K +IF +T + + L L G+ + L+ ++ QN RL L +
Sbjct: 287 KDVYLVHILNELA-GNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNK 345
Query: 210 FNAGLFDYLIATD 222
F A LI+TD
Sbjct: 346 FKAKNRSILISTD 358
Score = 139 (54.0 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 22/59 (37%), Positives = 43/59 (72%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NF++P ++ Y+HR+GRT RA +G +++LVS ++++++ I+ +G
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+ TQ + D+ ++ G + ++ + + + DSE + G D K
Sbjct: 8 EQTQLQTSDEEEDLGSEEEQEDEDNNHKEGDSE-AALSGEDDK 49
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 178 (67.7 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 64/213 (30%), Positives = 96/213 (45%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 69
Q +L+ V + + + L ++V+A PG + ++ G + L++LVLD
Sbjct: 96 QTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRLLDHIAQGTIDLSR----LEVLVLD 151
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD + G+ D++ + +P Q LL SAT D+ L + IL +P +T+ +VG V
Sbjct: 152 EADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQDILVDP--VTV-QVGTV 208
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
V V + K + LIFT T A RL LEK G
Sbjct: 209 APAV---TVAHALYPVEQHLKTPLLLELLRHTDTES-VLIFTRTKHRAKRLGEQLEKAGY 264
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
++A L L QN R L+ F G F L+ATD
Sbjct: 265 RAASLQGNLSQNRRQAALDGFRDGTFQILVATD 297
Score = 133 (51.9 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RGID V VIN+++P A Y+HRIGRTGRA +G + +LV+ D+ + I+ +G
Sbjct: 301 RGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIERSLG 359
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 175 (66.7 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 62/218 (28%), Positives = 96/218 (44%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V +T LAG P +V+ATPG + ++T + + ++++VLDEAD
Sbjct: 192 MKPVLITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEAD 251
Query: 73 LLLSYGYED---DLKALSAVIPRGCQ--CLLMSATSSSDVDKLKKL--ILHNPYILTLPE 125
LLS G D++ + +P Q LL +AT + +V LK + P I
Sbjct: 252 RLLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEI 311
Query: 126 VGDVKDEVIPK-NVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFL 184
+ KD V P + + R+ + K A++FTNT A L+ L
Sbjct: 312 STEAKDTVPPTLRTTYVQVPLTHRE-AFLHVLLSTESNITKSAIVFTNTTKSADLLERLL 370
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
G + L++ LPQ+ R L F A L+ATD
Sbjct: 371 RSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATD 408
Score = 138 (53.6 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D +V V+NFE+P+N YVHR+GRT RA TG +V+LV ++++ I+ +G
Sbjct: 412 RGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEERIG 470
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 171 (65.3 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 60/199 (30%), Positives = 92/199 (46%)
Query: 24 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 83
A LR L G IV+ATPG + L ++ S+ L +VLDEAD +L +G+ D+
Sbjct: 115 AQQLRK-LKGNTHIVVATPG---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDI 169
Query: 84 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 143
+ + P Q +L SAT D+ KL K + P ++ + +EV ++Q I
Sbjct: 170 EDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQS-----EEVTVDTIEQRVI 224
Query: 144 SCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
++R K A+IF T A +L L+ G A L+ ++PQ R
Sbjct: 225 ETTDRAKPDALRFVMDRDQ-PFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKR 283
Query: 204 LHILEEFNAGLFDYLIATD 222
+++ F YLIATD
Sbjct: 284 ERVMKSFREAKIQYLIATD 302
Score = 133 (51.9 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D V V N+++P++ Y+HRIGRTGRA +G +++ V+ + K EEI+ +G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364
Score = 45 (20.9 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 403 HLRDVPDYLLDAKTQ-EACKMVKLARAAMGNKNSSRRQGPRR--KFRKSDPLKSFSAEPT 459
HL ++ + L A Q E + K+ R K + P++ ++R+ D S E +
Sbjct: 355 HLEEI-EKTLGAPIQREIIEQPKIKRVDENGKPLPK-PAPKKSGEYRQRD-----SREGS 407
Query: 460 KRAGKGRMKREGRN 473
+ KGR + + RN
Sbjct: 408 RSGSKGRTRNDSRN 421
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 171 (65.3 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 60/199 (30%), Positives = 92/199 (46%)
Query: 24 ASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 83
A LR L G IV+ATPG + L ++ S+ L +VLDEAD +L +G+ D+
Sbjct: 115 AQQLRK-LKGNTHIVVATPG---RLLDHIRRETIDLSN-LSTIVLDEADQMLYFGFLYDI 169
Query: 84 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI 143
+ + P Q +L SAT D+ KL K + P ++ + +EV ++Q I
Sbjct: 170 EDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQS-----EEVTVDTIEQRVI 224
Query: 144 SCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
++R K A+IF T A +L L+ G A L+ ++PQ R
Sbjct: 225 ETTDRAKPDALRFVMDRDQ-PFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKR 283
Query: 204 LHILEEFNAGLFDYLIATD 222
+++ F YLIATD
Sbjct: 284 ERVMKSFREAKIQYLIATD 302
Score = 133 (51.9 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D V V N+++P++ Y+HRIGRTGRA +G +++ V+ + K EEI+ +G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLG 364
Score = 45 (20.9 bits), Expect = 5.9e-20, Sum P(3) = 5.9e-20
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 403 HLRDVPDYLLDAKTQ-EACKMVKLARAAMGNKNSSRRQGPRR--KFRKSDPLKSFSAEPT 459
HL ++ + L A Q E + K+ R K + P++ ++R+ D S E +
Sbjct: 355 HLEEI-EKTLGAPIQREIIEQPKIKRVDENGKPLPK-PAPKKSGEYRQRD-----SREGS 407
Query: 460 KRAGKGRMKREGRN 473
+ KGR + + RN
Sbjct: 408 RSGSKGRTRNDSRN 421
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 183 (69.5 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 53/190 (27%), Positives = 95/190 (50%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG + + + S+ F+ ++++I+V+DEAD +L G+ D+L + P+
Sbjct: 381 PDIVIATPG---RFIDH-MRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
Q +L SAT + VD L +L L+ P + + D K Q+F +R+
Sbjct: 437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFV----DNKKTTAKLLTQEFVRVRPQRELLRP 492
Query: 154 XXXXXXXXXV-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+ ++ +IF + A ++++ + + ++ L Q R+ LE+F
Sbjct: 493 AMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRD 552
Query: 213 GLFDYLIATD 222
G +YL+ATD
Sbjct: 553 GKCNYLLATD 562
Score = 134 (52.2 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 48/196 (24%), Positives = 82/196 (41%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID K + VIN+E P Y+HR+GRT RA +G +++L + K+ +K +
Sbjct: 566 RGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKV---LKGVFKN 622
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR---NEILNSEKL 375
+++ ++ L N VE E++ V K+ E + ++L+ ++ E +
Sbjct: 623 SSAQNTKLVNRN--LDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENI 680
Query: 376 -KAHFEVNPXXXXXXXXXXXXXXXPPASHLRDVPDYLLDAKTQE------ACKMVKLARA 428
K E+ AS +D K E A K K R
Sbjct: 681 MKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDR- 739
Query: 429 AMGNKNSSRRQGPRRK 444
+ NK S+++ +RK
Sbjct: 740 -LSNKKSTKKSKSKRK 754
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 183 (69.5 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 55/187 (29%), Positives = 88/187 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+ + TPG + + G L + S+ ++ +VLDEAD +L G+ +D++ + +P Q
Sbjct: 240 DVAVGTPGRIIDLMKRGAL---NLSE-VQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQ 295
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
++ SAT S + L K L+NP LT+ VGD D+ + + + I+ +
Sbjct: 296 SMMFSATMPSWIRSLTKKYLNNP--LTIDLVGD-SDQKLADGITMYSIAADSYGRASIIG 352
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K ++FT T A RL L K K L+ ++ Q R L F G F
Sbjct: 353 PLVKEHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNF 411
Query: 216 DYLIATD 222
L+ATD
Sbjct: 412 SILVATD 418
Score = 131 (51.2 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D NV VI++E+P N +VHR GRTGRA G+++ + D+ + + I+ VG
Sbjct: 422 RGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGS 481
Query: 319 DENE 322
NE
Sbjct: 482 RFNE 485
>UNIPROTKB|I3L0H8 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:25628 EMBL:AC012184 ProteinModelPortal:I3L0H8 SMR:I3L0H8
PRIDE:I3L0H8 Ensembl:ENST00000417604 Bgee:I3L0H8 Uniprot:I3L0H8
Length = 447
Score = 199 (75.1 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 181 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 236
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 237 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 291
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 292 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 351
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 352 EKVLVTTN 359
Score = 108 (43.1 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 363 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 422
Query: 312 IK 313
I+
Sbjct: 423 IQ 424
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 178 (67.7 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
Identities = 56/194 (28%), Positives = 91/194 (46%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
+L P IVI TPG + L FS + K LVLDEAD +L G++D+L+ +
Sbjct: 172 SLVSRPHIVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGFQDELRTIFQC 230
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-R 148
+P+ Q LL SAT +S++ L + + Y E D + QQF + +
Sbjct: 231 LPKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTL----TQQFIFEDKDAK 286
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+ + A+IF +T RL L L++ +++ +++ Q+ RL L
Sbjct: 287 ELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALS 346
Query: 209 EFNAGLFDYLIATD 222
+F +G L+ATD
Sbjct: 347 KFKSGKVPILLATD 360
Score = 134 (52.2 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
Identities = 24/59 (40%), Positives = 40/59 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D V VIN+++P++ YVHR+GRT RA G +VS+++ ++K+ +I+ VG
Sbjct: 364 RGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEEEVG 422
Score = 43 (20.2 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 227 KEKDQSDEGGHVDSRKSKKHPK 248
+E +EGG KS+K+PK
Sbjct: 2 EEPTPEEEGGITIMSKSRKNPK 23
Score = 37 (18.1 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 424 KLARAAMGNKNSSRRQGPRRK 444
KL R + +K +++G R+K
Sbjct: 467 KLKRKTLADKGLLKKRGKRQK 487
Score = 37 (18.1 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 167 ALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
AL+ T T ++AF+L E+F + LN
Sbjct: 129 ALVVTPTRELAFQLA---EQFKALGSCLN 154
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 168 (64.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 48 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 103
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 104 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 158
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 159 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 215
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 216 ERDVIMREFRSGSSRVLITTD 236
Score = 134 (52.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 238 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 296
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 168 (64.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 48 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 103
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 104 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 158
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 159 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 215
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 216 ERDVIMREFRSGSSRVLITTD 236
Score = 134 (52.2 bits), Expect = 7.7e-20, Sum P(2) = 7.7e-20
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 238 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 296
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 175 (66.7 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 59/221 (26%), Positives = 105/221 (47%)
Query: 5 ELCK-GQ-VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
EL K GQ + KV+ + AL P+I++ TPG + ++ ++ ++
Sbjct: 90 ELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTIRL----NN 145
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+ +V+DEAD +L+ G+ DD++++ + +P Q LL SAT + + ++ + + T
Sbjct: 146 VNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFM------T 199
Query: 123 LPEVGDVK-DEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
PE VK E+ N+QQF++ ER K + A++F T L
Sbjct: 200 EPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPEL-AIVFGRTKRRVDELA 258
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L G + ++ +L Q R+ L +F G + L+ATD
Sbjct: 259 EALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATD 299
Score = 135 (52.6 bits), Expect = 9.2e-20, Sum P(2) = 9.2e-20
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D V V NF++PQ+ YVHRIGRTGRA TG +++ ++P E + I+
Sbjct: 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIE 357
>UNIPROTKB|Q9NUU7 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965
"nuclear membrane" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:AK001988 EMBL:AK223262
EMBL:AL832970 EMBL:CH471241 EMBL:BC005162 EMBL:BC006544
EMBL:BC137496 EMBL:BC137497 IPI:IPI00019918 RefSeq:NP_060802.1
UniGene:Hs.656037 ProteinModelPortal:Q9NUU7 SMR:Q9NUU7
IntAct:Q9NUU7 MINT:MINT-1450935 STRING:Q9NUU7 PhosphoSite:Q9NUU7
DMDM:73919226 PaxDb:Q9NUU7 PeptideAtlas:Q9NUU7 PRIDE:Q9NUU7
DNASU:55308 Ensembl:ENST00000302243 GeneID:55308 KEGG:hsa:55308
UCSC:uc002eyv.3 GeneCards:GC16P070380 H-InvDB:HIX0038837
HGNC:HGNC:25628 HPA:HPA045252 neXtProt:NX_Q9NUU7
PharmGKB:PA134894996 InParanoid:Q9NUU7 PhylomeDB:Q9NUU7
GenomeRNAi:55308 NextBio:59538 ArrayExpress:Q9NUU7 Bgee:Q9NUU7
CleanEx:HS_DDX19A Genevestigator:Q9NUU7 GermOnline:ENSG00000168872
Uniprot:Q9NUU7
Length = 478
Score = 199 (75.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>UNIPROTKB|Q9UMR2 [details] [associations]
symbol:DDX19B "ATP-dependent RNA helicase DDX19B"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0015031
GO:GO:0031965 GO:GO:0005643 GO:GO:0003723 GO:GO:0004386
GO:GO:0006406 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
OrthoDB:EOG46MBJK EMBL:CH471241 EMBL:AJ237946 EMBL:AF353720
EMBL:AL136639 EMBL:CR457215 EMBL:CR533509 EMBL:AK027378
EMBL:AK301938 EMBL:AK302107 EMBL:AK316346 EMBL:AC012184
EMBL:BC003626 EMBL:BC010008 IPI:IPI00008943 IPI:IPI00027599
IPI:IPI00556368 IPI:IPI00939593 RefSeq:NP_001014449.1
RefSeq:NP_001014451.1 RefSeq:NP_001244101.1 RefSeq:NP_001244102.1
RefSeq:NP_001244103.1 RefSeq:NP_009173.1 UniGene:Hs.221761 PDB:3EWS
PDB:3FHC PDB:3FHT PDB:3FMO PDB:3FMP PDB:3G0H PDBsum:3EWS
PDBsum:3FHC PDBsum:3FHT PDBsum:3FMO PDBsum:3FMP PDBsum:3G0H
ProteinModelPortal:Q9UMR2 SMR:Q9UMR2 DIP:DIP-48486N IntAct:Q9UMR2
MINT:MINT-1387516 STRING:Q9UMR2 PhosphoSite:Q9UMR2 DMDM:10719979
PaxDb:Q9UMR2 PRIDE:Q9UMR2 DNASU:11269 Ensembl:ENST00000288071
Ensembl:ENST00000355992 Ensembl:ENST00000393657
Ensembl:ENST00000451014 Ensembl:ENST00000563392
Ensembl:ENST00000568625 GeneID:11269 KEGG:hsa:11269 UCSC:uc002eyo.3
UCSC:uc002eyp.3 CTD:11269 GeneCards:GC16P070328 HGNC:HGNC:2742
HPA:CAB037284 MIM:605812 neXtProt:NX_Q9UMR2 PharmGKB:PA27208
InParanoid:Q9UMR2 OMA:HETIFEV PhylomeDB:Q9UMR2 ChiTaRS:DDX19B
EvolutionaryTrace:Q9UMR2 GenomeRNAi:11269 NextBio:42879
ArrayExpress:Q9UMR2 Bgee:Q9UMR2 CleanEx:HS_DDX19B
Genevestigator:Q9UMR2 GermOnline:ENSG00000157349 Uniprot:Q9UMR2
Length = 479
Score = 199 (75.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 268
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 323
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 383
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 384 EKVLVTTN 391
Score = 108 (43.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 454
Query: 312 IK 313
I+
Sbjct: 455 IQ 456
>UNIPROTKB|H3BQK0 [details] [associations]
symbol:DDX19B "HCG1998531, isoform CRA_g" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:CH471241 EMBL:AC012184 HGNC:HGNC:2742
ChiTaRS:DDX19B SMR:H3BQK0 Ensembl:ENST00000563206 Uniprot:H3BQK0
Length = 484
Score = 199 (75.1 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 218 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L + D ++Q+++ CS RD+
Sbjct: 274 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLD-----TIKQYYVLCSSRDEKFQA 328
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 329 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 388
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 389 EKVLVTTN 396
Score = 108 (43.1 bits), Expect = 9.8e-20, Sum P(2) = 9.8e-20
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 400 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 459
Query: 312 IK 313
I+
Sbjct: 460 IQ 461
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 184 (69.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 54/187 (28%), Positives = 89/187 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+ + TPG + + G L + S+ ++ +VLDEAD +L G+ +D++ + +P Q
Sbjct: 228 DVAVGTPGRVIDLMKRGAL---NLSE-VQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQ 283
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
++ SAT S + L K L+NP LT+ VGD D+ + + + I +
Sbjct: 284 SMMFSATMPSWIRSLTKKYLNNP--LTVDLVGD-SDQKLADGITTYSIIADSYGRASIIG 340
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K ++FT T A RL L + K L+ ++ Q+ R L F G F
Sbjct: 341 PLVTEHAKGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHF 399
Query: 216 DYLIATD 222
+ L+ATD
Sbjct: 400 NILVATD 406
Score = 128 (50.1 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D NV +I++E+P N +VHR GRTGRA G+++ + S D+ + + I+ VG
Sbjct: 410 RGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 185 (70.2 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 61/219 (27%), Positives = 97/219 (44%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 184 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHI 239
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L L PY + L
Sbjct: 240 QMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHLQKPYEINL 299
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 300 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 352
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 353 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 391
Score = 123 (48.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 395 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 454
Query: 319 D 319
+
Sbjct: 455 E 455
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 165 (63.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 52/200 (26%), Positives = 96/200 (48%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
D AAL +V+ TPG + + L + D++++ VLDEAD +LS G++D +
Sbjct: 129 DDMAALQAGVHVVVGTPGRVHDMIQRRALPT----DAVQMFVLDEADEMLSRGFKDQIYD 184
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ ++P Q +L+SAT DV ++ + +P + + KDE+ + ++QF+++
Sbjct: 185 IFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVK-----KDELTLEGIKQFYVAV 239
Query: 146 SERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNS 202
+ + +A+IF NT +D +L F + S ++ ++ Q
Sbjct: 240 EKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTE-QLTERDFTVSS--MHGDMDQAQ 296
Query: 203 RLHILEEFNAGLFDYLIATD 222
R ++ EF G LI TD
Sbjct: 297 RDTLMHEFRTGSSRILITTD 316
Score = 141 (54.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G S++ V+ D++++ EI+ F
Sbjct: 318 LARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQF 376
>UNIPROTKB|Q3ZBV2 [details] [associations]
symbol:DDX19A "ATP-dependent RNA helicase DDX19A"
species:9913 "Bos taurus" [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005643
"nuclear pore" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0015031 GO:GO:0031965 GO:GO:0005643
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000063236 EMBL:BC103093 IPI:IPI00788586
RefSeq:NP_001029743.1 UniGene:Bt.49612 HSSP:Q9UHL0
ProteinModelPortal:Q3ZBV2 SMR:Q3ZBV2 PRIDE:Q3ZBV2
Ensembl:ENSBTAT00000004645 GeneID:529929 KEGG:bta:529929 CTD:55308
HOVERGEN:HBG107989 InParanoid:Q3ZBV2 OMA:MMAINTI OrthoDB:EOG46MBJK
NextBio:20875139 ArrayExpress:Q3ZBV2 Uniprot:Q3ZBV2
Length = 478
Score = 197 (74.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNSRDEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>UNIPROTKB|I3LC00 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236
EMBL:CU929739 RefSeq:XP_003126917.1 Ensembl:ENSSSCT00000029799
GeneID:100524144 KEGG:ssc:100524144 Uniprot:I3LC00
Length = 478
Score = 197 (74.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNRDEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>UNIPROTKB|F1S432 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:HETIFEV
EMBL:CU929739 Ensembl:ENSSSCT00000003016 Uniprot:F1S432
Length = 481
Score = 197 (74.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 215 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 270
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 271 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNRDEKFQA 325
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 326 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGK 385
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 386 EKVLVTTN 393
Score = 108 (43.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 397 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 456
Query: 312 IK 313
I+
Sbjct: 457 IQ 458
>UNIPROTKB|F1MUT6 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 EMBL:DAAA02045970
IPI:IPI00704706 UniGene:Bt.37736 Ensembl:ENSBTAT00000004644
OMA:KMSMNIL Uniprot:F1MUT6
Length = 484
Score = 197 (74.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 218 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 274 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNSRDEKFQA 328
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 329 LCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGK 388
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 389 EKVLVTTN 396
Score = 108 (43.1 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 400 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 459
Query: 312 IK 313
I+
Sbjct: 460 IQ 461
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 190 (71.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 66/222 (29%), Positives = 100/222 (45%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
AL L + L + A L+ P +V+ATPG + L T QS D
Sbjct: 117 ALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLD-LCT---QSHISLD 172
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK-KLILHNPYI 120
++K LVLDEAD LL G+ D++ L A++P+ Q LL SAT +D L KL+ ++P
Sbjct: 173 AIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP-- 230
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL 180
L ++ V+ + +Q ++ + + L+F + D A +
Sbjct: 231 --LKVEASTRNAVVGEIEEQLYLV--NKGSKAQALIALLKQYQWPQVLVFISARDDADAI 286
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L K GI +A L+ E Q R L +F A L+ATD
Sbjct: 287 AKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATD 328
Score = 114 (45.2 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 40/121 (33%), Positives = 59/121 (48%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGI + VIN ++P +A YVHRIGRT RA G ++SLV EM I++
Sbjct: 330 MARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLT 389
Query: 317 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
+A FP+ + + E + AE+ K + K R+ +A R I N +K
Sbjct: 390 A--RALPLVFLADFPVTDKPS-EKIIDGAEN--KVIPKRPPRDKQAN--RRSI-NKHSVK 441
Query: 377 A 377
A
Sbjct: 442 A 442
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 190 (71.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 66/222 (29%), Positives = 100/222 (45%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
AL L + L + A L+ P +V+ATPG + L T QS D
Sbjct: 117 ALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGRLLD-LCT---QSHISLD 172
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK-KLILHNPYI 120
++K LVLDEAD LL G+ D++ L A++P+ Q LL SAT +D L KL+ ++P
Sbjct: 173 AIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDP-- 230
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL 180
L ++ V+ + +Q ++ + + L+F + D A +
Sbjct: 231 --LKVEASTRNAVVGEIEEQLYLV--NKGSKAQALIALLKQYQWPQVLVFISARDDADAI 286
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L K GI +A L+ E Q R L +F A L+ATD
Sbjct: 287 AKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATD 328
Score = 114 (45.2 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 40/121 (33%), Positives = 59/121 (48%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGI + VIN ++P +A YVHRIGRT RA G ++SLV EM I++
Sbjct: 330 MARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHGEMPNLTAIRNLT 389
Query: 317 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
+A FP+ + + E + AE+ K + K R+ +A R I N +K
Sbjct: 390 A--RALPLVFLADFPVTDKPS-EKIIDGAEN--KVIPKRPPRDKQAN--RRSI-NKHSVK 441
Query: 377 A 377
A
Sbjct: 442 A 442
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 194 (73.4 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 61/197 (30%), Positives = 95/197 (48%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
L PDIVIATPG + + + S SF+ DS++ILV+DEAD +L G++D+L + +
Sbjct: 350 LKSRPDIVIATPG---RFIDH-IRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGL 405
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT +S + L L L P + + D + K Q+F + +RD
Sbjct: 406 LPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMI----DPPKKAATKLTQEF-VRIRKRD 460
Query: 150 KXXXXXXXXXXXXV----QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+ QK+ ++F + A RL++ + G+ L+ L Q RL
Sbjct: 461 HLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLD 520
Query: 206 ILEEFNAGLFDYLIATD 222
+ +F LI TD
Sbjct: 521 SVNKFKNLEVPVLICTD 537
Score = 118 (46.6 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 37/119 (31%), Positives = 58/119 (48%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV---SPDEMKIFEEIKSF 315
RG+D + VIN++MP++ Y+HR+GRT RA G SV+ V S D + IKS
Sbjct: 541 RGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSV 600
Query: 316 VGDDENEDSNIIAPFPLLAQNA----VESLRYRAEDVAKSVTKIAVRESRAQD-LRNEI 369
+EN+ + L +N +E E + ++ I V E ++ LR E+
Sbjct: 601 ---EENKS---LTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEM 653
Score = 40 (19.1 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 421 KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 480
K K+ A NK + + +R+ K+D + S TK +R + T +
Sbjct: 684 KNSKVLGALSRNKKVTNSKKRKREEAKADGNGARSYRKTKTDRIADQERTFKKQKSTNSN 743
Query: 481 KKK 483
KKK
Sbjct: 744 KKK 746
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 166 (63.5 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 44/186 (23%), Positives = 95/186 (51%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG + ++ VL+++ +K+ VLDEAD +LS G++D ++ + ++P Q
Sbjct: 151 VVVGTPGRVYDMINRKVLRTQY----IKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQV 206
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT DV ++ + + +P + + K+E+ + ++QF+++ + +
Sbjct: 207 ILLSATMPPDVLEVSRCFMRDPVSILVK-----KEELTLEGIKQFYVNVKQENWKLGTLC 261
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+++IF NT +L + + ++ ++ Q R I+++F +G
Sbjct: 262 DLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSR 321
Query: 217 YLIATD 222
LI TD
Sbjct: 322 VLITTD 327
Score = 138 (53.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ ++ D+ +I ++I+ F
Sbjct: 329 LARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQF 387
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 175 (66.7 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 48 (22.0 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 431 GNKNSSR--RQGP-RRKFRKSDPLKSFSAEPTKRAGKGRMKR---EGRNGDDTG----KH 480
GN+N SR R G R + R D R G R +R +GR G G KH
Sbjct: 459 GNRNRSRDGRGGDGRNRDRNRDGRNRDGNRDRNRDGGNRGRRGEGQGRPGSSNGRGERKH 518
Query: 481 KKKK 484
+K
Sbjct: 519 HSRK 522
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 189 (71.6 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 59/211 (27%), Positives = 97/211 (45%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
LKV+++ D AL IV+ TPG + K L T + + D +LDEAD
Sbjct: 124 LKVLEIYGGASILDQMRALKSGAHIVVGTPGRV-KDLIT---RDRLHLDECHTFILDEAD 179
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ DD+ + P Q +L SAT V ++ + L NP + + G ++
Sbjct: 180 EMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQ 235
Query: 133 VIPKNVQQFWISCS-ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K QQ+W+ E+D+ +++F T RL +L G K+
Sbjct: 236 TVAKVEQQYWVVKGVEKDEAMARLLETEETDA---SIVFVRTRQDTERLADWLCARGFKA 292
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A L+ ++PQ+ R ++ G+ D L+ATD
Sbjct: 293 AALHGDIPQSLRERTVDHIKQGVIDILVATD 323
Score = 117 (46.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
V RG+D + V N+++P + Y+HRIGRTGRA G ++ LV +++++ I+
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Score = 43 (20.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 484
R GN+ R G R R+ + P R G+ R +R R+G+ +G ++ ++
Sbjct: 600 RRPEGNREGGFRGG-REGGREGGRGRGGEGRPF-REGERRFERN-RSGESSGSYRGER 654
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 189 (71.6 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 59/211 (27%), Positives = 97/211 (45%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
LKV+++ D AL IV+ TPG + K L T + + D +LDEAD
Sbjct: 124 LKVLEIYGGASILDQMRALKSGAHIVVGTPGRV-KDLIT---RDRLHLDECHTFILDEAD 179
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ DD+ + P Q +L SAT V ++ + L NP + + G ++
Sbjct: 180 EMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDV--AGS--NQ 235
Query: 133 VIPKNVQQFWISCS-ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K QQ+W+ E+D+ +++F T RL +L G K+
Sbjct: 236 TVAKVEQQYWVVKGVEKDEAMARLLETEETDA---SIVFVRTRQDTERLADWLCARGFKA 292
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A L+ ++PQ+ R ++ G+ D L+ATD
Sbjct: 293 AALHGDIPQSLRERTVDHIKQGVIDILVATD 323
Score = 117 (46.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
V RG+D + V N+++P + Y+HRIGRTGRA G ++ LV +++++ I+
Sbjct: 325 VARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 381
Score = 43 (20.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKKK 484
R GN+ R G R R+ + P R G+ R +R R+G+ +G ++ ++
Sbjct: 600 RRPEGNREGGFRGG-REGGREGGRGRGGEGRPF-REGERRFERN-RSGESSGSYRGER 654
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 179 (68.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 179 (68.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 179 (68.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 179 (68.1 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 160 (61.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 59/221 (26%), Positives = 97/221 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K V + +D L P+ ++ATPG + L+ G + L
Sbjct: 93 LRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLADHLTQGHFHL----NGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ +L ++ A R Q LL SAT + V++ +L P +
Sbjct: 149 ELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRI 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
+ G + I K +F+++ + K Q+ +IFT T RL
Sbjct: 209 AI-NAGHSEHVDIAK---RFYLADNLTQKEALLQHFLVTEKSQQ-IIIFTATRSDTDRLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L + + + L+ EL Q R I+E F+ G L+ TD
Sbjct: 264 KLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTD 304
Score = 145 (56.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D NV VINF+MP++ +VHRIGRTGRA G ++SLV P++ + +++F+
Sbjct: 308 RGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFL 365
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 160 (61.4 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 59/221 (26%), Positives = 97/221 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K V + +D L P+ ++ATPG + L+ G + L
Sbjct: 93 LRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPGRLADHLTQGHFHL----NGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ +L ++ A R Q LL SAT + V++ +L P +
Sbjct: 149 ELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHAQVNEFATELLTKPKRI 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
+ G + I K +F+++ + K Q+ +IFT T RL
Sbjct: 209 AI-NAGHSEHVDIAK---RFYLADNLTQKEALLQHFLVTEKSQQ-IIIFTATRSDTDRLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
L + + + L+ EL Q R I+E F+ G L+ TD
Sbjct: 264 KLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTD 304
Score = 145 (56.1 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+D NV VINF+MP++ +VHRIGRTGRA G ++SLV P++ + +++F+
Sbjct: 308 RGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFL 365
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 175 (66.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 47 (21.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM-KREGRNGDDTG----KHK 481
R+ G R + R R D + + E ++ +GR + +GR G G KH
Sbjct: 463 RSRDGRGGDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGRGERKHH 522
Query: 482 KKK 484
+K
Sbjct: 523 SRK 525
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 175 (66.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 47 (21.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM-KREGRNGDDTG----KHK 481
R+ G R + R R D + + E ++ +GR + +GR G G KH
Sbjct: 463 RSRDGRGGDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGRGERKHH 522
Query: 482 KKK 484
+K
Sbjct: 523 SRK 525
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 175 (66.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 47 (21.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM-KREGRNGDDTG----KHK 481
R+ G R + R R D + + E ++ +GR + +GR G G KH
Sbjct: 463 RSRDGRGGDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGRGERKHH 522
Query: 482 KKK 484
+K
Sbjct: 523 SRK 525
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 175 (66.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 47 (21.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM-KREGRNGDDTG----KHK 481
R+ G R + R R D + + E ++ +GR + +GR G G KH
Sbjct: 463 RSRDGRGGDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGRGERKHH 522
Query: 482 KKK 484
+K
Sbjct: 523 SRK 525
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 175 (66.7 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 47 (21.6 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 427 RAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM-KREGRNGDDTG----KHK 481
R+ G R + R R D + + E ++ +GR + +GR G G KH
Sbjct: 463 RSRDGRGGDGRNRDRNRDGRNRDGNRDRNREGSRDGNRGRRGEGQGRPGSSNGRGERKHH 522
Query: 482 KKK 484
+K
Sbjct: 523 SRK 525
Score = 39 (18.8 bits), Expect = 2.1e-18, Sum P(3) = 2.1e-18
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR GD + + +
Sbjct: 457 RDGNRNRSRDGRGGDGRNRDRNR 479
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 188 (71.2 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 64/222 (28%), Positives = 92/222 (41%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPAS-DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
A+ + K + VV L LRA GP IV+ TPG + L G L S
Sbjct: 93 AMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP-QIVVGTPGRLLDHLKRGTLDLSKLS 151
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LVLDEAD +L G+ +D++ + A IP G Q L SAT + ++ + + P
Sbjct: 152 G----LVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQE 207
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL 180
+ + + ++ Q +W R A+IF T + +
Sbjct: 208 VRIQSSVTTRPDIS----QSYWTVWGMRKNEALVRFLEAEDF--DAAIIFVRTKNATLEV 261
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
LE+ G SA LN ++ Q R LE G D LIATD
Sbjct: 262 AEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 303
Score = 121 (47.7 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D + + V+N+++P ++ YVHRIGRTGRA G ++ V E ++ I+
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Score = 38 (18.4 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 438 RQGPRRKF--RKSDPLKSFSAEPTKRA-GKGRM----KREGR---NGDDTGKHK 481
R+G R F + + ++FS E + G GR +REGR D TG+ +
Sbjct: 571 RRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 168 (64.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 54/201 (26%), Positives = 97/201 (48%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 144 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 199
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ K + +P + + K+E+ + ++QF+I+
Sbjct: 200 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK-----KEELTLEGIKQFYIN 254
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 255 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 311
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 312 ERDVIMREFRSGSSRVLITTD 332
Score = 134 (52.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 334 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 392
>UNIPROTKB|E2RR50 [details] [associations]
symbol:DDX19A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
EMBL:AAEX03004077 RefSeq:XP_536790.2 ProteinModelPortal:E2RR50
Ensembl:ENSCAFT00000032061 GeneID:479658 KEGG:cfa:479658
NextBio:20854805 Uniprot:E2RR50
Length = 478
Score = 194 (73.4 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++P+ C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPKNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNRDEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>UNIPROTKB|Q9DGP9 [details] [associations]
symbol:deadsouth "ATP-dependent RNA helicase DDX25"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0032019 "mitochondrial cloud" evidence=IDA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0016887 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0045495 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032019 HSSP:Q9UHL0 HOVERGEN:HBG107989 CTD:29118
EMBL:AF190623 RefSeq:NP_001082017.1 UniGene:Xl.670
ProteinModelPortal:Q9DGP9 SMR:Q9DGP9 PRIDE:Q9DGP9 GeneID:398180
KEGG:xla:398180 Xenbase:XB-GENE-958142 Uniprot:Q9DGP9
Length = 483
Score = 190 (71.9 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 54/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-GYEDDLKALSAVIPRGC 94
IVI TPG + C ++ ++ S + VLDEAD++++ G+ D + +P+ C
Sbjct: 218 IVIGTPGTVLDWCFKLRLITVENIS----VFVLDEADVMINVQGHSDHSVRVKRSMPKSC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V + I+ +P I+ L K+E+ KN+QQF+ C +++
Sbjct: 274 QMLLFSATFEDSVWAFAERIVPDPNIIKLK-----KEELTLKNIQQFYDQCENKEQKYSA 328
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A++F T +A L L G + A+L+ ELP R +++ F G
Sbjct: 329 LCNLYGVITIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQRFREGR 388
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 389 EKVLVTTN 396
Score = 112 (44.5 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RGID + V V+NF++P N G Y+HRIGRTGR G +VSL+ + + +EI
Sbjct: 400 RGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLIENFFVYMLKEI 459
Query: 313 K 313
+
Sbjct: 460 E 460
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 170 (64.9 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ ++ ++ + +VLDEAD +L+ G+ +D++++ +
Sbjct: 117 ALKKNPHIIVGTPGRLLDHINRRTMRLQT----VNTVVLDEADEMLNMGFIEDIESILSN 172
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK-DEVIPKNVQQFWISCSER 148
+P Q LL SAT + + ++ + + NP E VK E+ N+QQF++ ER
Sbjct: 173 VPAEHQTLLFSATMPAPIKRIAERFMTNP------EHVKVKAKEMTVSNIQQFYLEVHER 226
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K + A++F T L L G + ++ +L Q R+ L
Sbjct: 227 KKFDTLTRLLDIQSPEL-AIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALR 285
Query: 209 EFNAGLFDYLIATD 222
+F G + L+ATD
Sbjct: 286 KFKQGAIEVLVATD 299
Score = 134 (52.2 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D V V NF++PQ+ YVHRIGRTGRA TG +++ ++P E + I+
Sbjct: 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIE 357
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 167 (63.8 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 57/196 (29%), Positives = 95/196 (48%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L+ P +V+ATPG + + + ++ + +K LV+DEAD LLS + DDL +V+
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 91 PRG--CQCLLMSATSSSDVDKLK-KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
P Q LL +AT + + +LK + +N L L EV + + +P +QQ +I S
Sbjct: 182 PASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEV-ETDNISVPSTLQQSYIFVSS 240
Query: 148 RDKXXXXXXXXXX-XXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + +K A+IF N A + L ++ L++E+ Q R++
Sbjct: 241 QVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINS 300
Query: 207 LEEFNAGLFDYLIATD 222
L F A L+ATD
Sbjct: 301 LGRFRAEAAKILVATD 316
Score = 136 (52.9 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V VINF++P++ Y+HR+GRT RA +G S+S+V+ ++ + I+ VG
Sbjct: 320 RGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGT 379
Query: 319 DENEDSNI 326
+E ++
Sbjct: 380 KLSEYEHV 387
>UNIPROTKB|Q5ZMC1 [details] [associations]
symbol:DDX19B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K01529 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:PQAICLA
GeneTree:ENSGT00530000063236 HOVERGEN:HBG107989 CTD:11269
EMBL:AADN02040672 UniGene:Gga.7753 EMBL:AJ719463 IPI:IPI00571485
RefSeq:NP_001006568.1 SMR:Q5ZMC1 Ensembl:ENSGALT00000039619
GeneID:426504 KEGG:gga:426504 InParanoid:Q5ZMC1 NextBio:20828056
Uniprot:Q5ZMC1
Length = 479
Score = 194 (73.4 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRDC 268
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ RD+
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNSRDEKFRA 323
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A++F +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 324 LCNIYGAITIAQAMVFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 383
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 384 EKVLVTTN 391
Score = 107 (42.7 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G ++++V S M I
Sbjct: 395 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKHSMNILNR 454
Query: 312 IK 313
I+
Sbjct: 455 IQ 456
>MGI|MGI:99526 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0006917 "induction of apoptosis"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:99526
GO:GO:0005524 GO:GO:0005737 GO:GO:0015031 GO:GO:0031965
GO:GO:0005643 GO:GO:0003723 EMBL:CH466525 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 OMA:PQAICLA GeneTree:ENSGT00530000063236 CTD:55308
HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:L25125 EMBL:AK049467
EMBL:AK146548 EMBL:BC011270 IPI:IPI00123651 PIR:I49731
RefSeq:NP_031942.2 UniGene:Mm.287901 ProteinModelPortal:Q61655
SMR:Q61655 IntAct:Q61655 PhosphoSite:Q61655
REPRODUCTION-2DPAGE:Q61655 PaxDb:Q61655 PRIDE:Q61655
Ensembl:ENSMUST00000040416 GeneID:13680 KEGG:mmu:13680
InParanoid:Q543M2 ChiTaRS:DDX19A NextBio:284434 Bgee:Q61655
CleanEx:MM_DDX19A Genevestigator:Q61655
GermOnline:ENSMUSG00000015023 Uniprot:Q61655
Length = 478
Score = 193 (73.0 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ R++
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNREEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>RGD|1303136 [details] [associations]
symbol:Ddx19a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010043
"response to zinc ion" evidence=IEP] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524 GO:GO:0006917
GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 193 (73.0 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ R++
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNREEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>RGD|1593382 [details] [associations]
symbol:Ddx19b "DEAD (Asp-Glu-Ala-As) box polypeptide 19B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1303136 RGD:1593382 GO:GO:0005524
GO:GO:0006917 GO:GO:0010043 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
CTD:55308 HOVERGEN:HBG107989 OrthoDB:EOG46MBJK EMBL:BC079094
IPI:IPI00476885 RefSeq:NP_001005381.2 UniGene:Rn.228949 SMR:Q68FX3
Ensembl:ENSRNOT00000024793 GeneID:292022 KEGG:rno:292022
UCSC:RGD:1303136 NextBio:633623 Genevestigator:Q68FX3
Uniprot:Q68FX3
Length = 478
Score = 193 (73.0 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 212 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 267
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ R++
Sbjct: 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNREEKFQA 322
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 323 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 382
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 383 EKVLVTTN 390
Score = 108 (43.1 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 394 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 453
Query: 312 IK 313
I+
Sbjct: 454 IQ 455
>UNIPROTKB|E9PTL9 [details] [associations]
symbol:Ddx19b "Protein Ddx19b" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1593382 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00959699
Ensembl:ENSRNOT00000059034 ArrayExpress:E9PTL9 Uniprot:E9PTL9
Length = 482
Score = 193 (73.0 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 53/188 (28%), Positives = 91/188 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD++++ G++D + ++PR C
Sbjct: 216 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 271
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C+ R++
Sbjct: 272 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLD-----TIKQYYVLCNNREEKFQA 326
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 327 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 386
Query: 215 FDYLIATD 222
L+ T+
Sbjct: 387 EKVLVTTN 394
Score = 108 (43.1 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEE 311
RGID + V VINF++P + G Y+HRIGRTGR G +V++V S M I
Sbjct: 398 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNR 457
Query: 312 IK 313
I+
Sbjct: 458 IQ 459
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 195 (73.7 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 57/196 (29%), Positives = 98/196 (50%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 86
++AL D+V+ TPG + +++ +S ++ LVLDEAD +L+ G+E+ ++++
Sbjct: 222 QSALTRGVDVVVGTPGRI-----IDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESI 276
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 146
+P Q +L SAT + V KL + L NP L + VGD +DE + + ++ + I+ +
Sbjct: 277 LENLPTKRQSMLFSATMPTWVKKLARKYLDNP--LNIDLVGD-QDEKLAEGIKLYAIATT 333
Query: 147 ERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
K K ++FT T A + L L I + L+ ++ Q+ R
Sbjct: 334 STSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERT 392
Query: 207 LEEFNAGLFDYLIATD 222
L F G F L+ATD
Sbjct: 393 LNAFRQGKFTVLVATD 408
Score = 112 (44.5 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D NV VI++E+P + +VHR GRTGRA G+++ + + + + ++ VG
Sbjct: 412 RGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVG 470
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 179 (68.1 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 123 (48.4 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 D 319
+
Sbjct: 456 E 456
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 179 (68.1 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 60/219 (27%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + D +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----DHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 123 (48.4 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 24/61 (39%), Positives = 41/61 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 D 319
+
Sbjct: 456 E 456
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 175 (66.7 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 50/193 (25%), Positives = 94/193 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ ++ ++ +VLDEAD +L+ G+ +D++A+
Sbjct: 116 ALKKHPHIIVGTPGRILDHINRKTLRLQN----VETVVLDEADEMLNMGFIEDIEAILTD 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P + + K+ +P N+QQF++ E+
Sbjct: 172 VPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVK----AKEVTMP-NIQQFYLEVQEKK 226
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 227 KFDVLTRLLDIQSPEL-AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRK 285
Query: 210 FNAGLFDYLIATD 222
F G + L+ATD
Sbjct: 286 FKEGSIEVLVATD 298
Score = 123 (48.4 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D V V NF++PQ+ YVHRIGRTGRA G ++ V+P E
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRE 348
Score = 45 (20.9 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 432 NKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKKK 483
N++ R G R + R + ++ R G+G +GR G G+ ++K
Sbjct: 479 NRDGRNRDGNRDRNRDGNRDRNRDGGSRGRRGEG----QGRPGSSNGRGERK 526
Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 461 RAGKGRMKREGRNGDDTGKHKKK 483
R G R+GR G D G+++ +
Sbjct: 457 RDGNRNRSRDGRGGGD-GRNRDR 478
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 166 (63.5 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 54/201 (26%), Positives = 95/201 (47%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 143 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 198
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT DV ++ K + P + + K+E+ + ++QF+I+
Sbjct: 199 EIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVK-----KEELTLEGIKQFYIN 253
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 254 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 310
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 311 ERDVIMREFRSGSSRVLITTD 331
Score = 134 (52.2 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 391
>ZFIN|ZDB-GENE-080721-12 [details] [associations]
symbol:zgc:193690 "zgc:193690" species:7955 "Danio
rerio" [GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-080721-12 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
EMBL:CR846089 IPI:IPI00928637 ProteinModelPortal:F1Q5T4
Ensembl:ENSDART00000134461 ArrayExpress:F1Q5T4 Bgee:F1Q5T4
Uniprot:F1Q5T4
Length = 492
Score = 198 (74.8 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 56/189 (29%), Positives = 96/189 (50%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
IVI TPG + C+ ++ K +K+ VLDEAD++++ G++D + ++P+GC
Sbjct: 205 IVIGTPGTVLDWCIKLKLIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPKGC 260
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKXXX 153
Q LL SAT V K + ++ +P I+ L + D ++Q+++ C S+ DK
Sbjct: 261 QMLLFSATFEDSVWKFAERVVPDPNIIKLKREEETLD-----TIKQYYVLCNSKEDKFNA 315
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF +T MA L + K G + A+L+ E+ R ++E F G
Sbjct: 316 LCNIYGAITIAQ-AMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAAVIERFRDG 374
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 375 KEKVLITTN 383
Score = 102 (41.0 bits), Expect = 5.8e-19, Sum P(2) = 5.8e-19
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RGID + V VINF++P + Y+HRIGRTGR G ++++V D + E +
Sbjct: 387 RGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRFGKRGLAINMV--DSQRSMEIL 444
Query: 313 KSF 315
K++
Sbjct: 445 KTY 447
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 158 (60.7 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 37/121 (30%), Positives = 63/121 (52%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGIDF V VINF+ PQ+ Y+HRIGRTGRA NTG +V+ + ++ + + I +
Sbjct: 348 LARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVM 407
Query: 317 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
E N + P ++ + L+ ++ K +T A + + + + E + K +
Sbjct: 408 RSSGCEVPNWVMALPKPSKEMKKKLK-KSPPKRKRITTRASYDRQKEQRKKEYIKKVKKE 466
Query: 377 A 377
A
Sbjct: 467 A 467
Score = 145 (56.1 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
Identities = 61/212 (28%), Positives = 94/212 (44%)
Query: 13 LKVVQLTSSMPASDLRAA-LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
LK+++L+ S +A L D+ I TP + + + TG+ SF + ++ V+DEA
Sbjct: 144 LKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTGL----SF-EKVEFFVMDEA 198
Query: 72 DLLLSYGY-EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
D L G+ E LSA L SAT S V++L K++ +P + VG +K
Sbjct: 199 DRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRII---VG-LK 254
Query: 131 DEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
D Q+ S+ K ++ + +IF I+ A L L I
Sbjct: 255 DAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKALYTELLFDEIH 314
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+++ ELPQ R L +F G LIATD
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATD 346
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 175 (66.7 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
Identities = 59/219 (26%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + + +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----EHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 164 (62.8 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 57/200 (28%), Positives = 99/200 (49%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
D R AG +V+ TPG + ++ L + +K+ VLDEAD +LS G++D +
Sbjct: 140 DQRKLEAGI-HVVVGTPGRVGDMINRNALDTSR----IKMFVLDEADEMLSRGFKDQIYE 194
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ +P+ Q +L+SAT S+V + + NP + + KDE+ + ++QF+I+
Sbjct: 195 VFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVK-----KDELTLEGIRQFYINV 249
Query: 146 SERDKXXXXXXXXXXXXVQ-KKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNS 202
++D+ V +A+IF NT L K+ +F + + L+ ++ Q
Sbjct: 250 -QKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTV--SCLHGDMDQAE 306
Query: 203 RLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 307 RDTIMREFRSGSSRVLITTD 326
Score = 134 (52.2 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 23/59 (38%), Positives = 40/59 (67%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR+GR G +++ V+ ++ + +EI+S+
Sbjct: 328 LARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIESY 386
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 163 (62.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 53/201 (26%), Positives = 96/201 (47%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L SK +K+ VLDEAD +LS G++D +
Sbjct: 165 NEVQKLQAEAPHIVVGTPGRVYDMLNRKFLSSKY----IKMFVLDEADEMLSRGFKDQIY 220
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT ++V + + P + + K+E+ + ++QF+I+
Sbjct: 221 EIFQKLSTSIQVVLLSATMPAEVLDVTTKFMREPVRILVK-----KEELTLEGIRQFYIN 275
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ + +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 276 VEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 332
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 333 DRDLIMREFRSGSSRVLITTD 353
Score = 135 (52.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ D+ + +I++F
Sbjct: 355 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLRDIETF 413
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 157 (60.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 53/187 (28%), Positives = 88/187 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I Q
Sbjct: 124 DILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L SAT S D +K+L H +L P+ +V + V+Q +R K
Sbjct: 180 TMLFSATYS---DAVKQLS-HK--MLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLS 233
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+F +T + A L L GI + + + + Q +R +L++F AG
Sbjct: 234 ELVGRNN-WRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKL 292
Query: 216 DYLIATD 222
L+ATD
Sbjct: 293 RVLVATD 299
Score = 142 (55.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + + VIN E+P A YVHRIGRTGRA +G ++S VSP + ++ EI++ +G+
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 157 (60.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 53/187 (28%), Positives = 88/187 (47%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q S+ LV+DEAD +L G+ D++ + +I Q
Sbjct: 124 DILVATPGRLFDIIG----QFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L SAT S D +K+L H +L P+ +V + V+Q +R K
Sbjct: 180 TMLFSATYS---DAVKQLS-HK--MLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLS 233
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++ L+F +T + A L L GI + + + + Q +R +L++F AG
Sbjct: 234 ELVGRNN-WRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKL 292
Query: 216 DYLIATD 222
L+ATD
Sbjct: 293 RVLVATD 299
Score = 142 (55.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + + VIN E+P A YVHRIGRTGRA +G ++S VSP + ++ EI++ +G+
Sbjct: 303 RGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALIGE 362
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 153 (58.9 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 51/194 (26%), Positives = 89/194 (45%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + G K ++I+V+DEAD +L G+ D++ + ++ P Q
Sbjct: 125 DVLIATPGRLLDHFERG----KLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
L SAT + +++++ L P + + E I + V F S RD+
Sbjct: 181 TLFFSATMAPEIERITNTFLSAPARIEVARQATAS-ETIEQGVVLF--KGSRRDREASEK 237
Query: 156 XXXXXXXVQKK------ALIFTNT-IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+ + A+IF N D+ K L+K+G +A ++ +L Q+ R L+
Sbjct: 238 RAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKS-LQKYGYDAAPIHGDLDQSQRTRTLD 296
Query: 209 EFNAGLFDYLIATD 222
F G L+A+D
Sbjct: 297 GFREGKLRLLVASD 310
Score = 128 (50.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V V NF++P + YVHRIGRTGRA G +++L P + K + I+ +
Sbjct: 314 RGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRDEKALDAIEKLIQK 373
Query: 319 D 319
D
Sbjct: 374 D 374
Score = 58 (25.5 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 405 RDVPDYLLDAKTQEA--CKMVKLARAAMGNK----NSSRRQGPRRKFRKSDPLKSFSAEP 458
+D+P A+T+E K + + A +K ++ +R+ +R+ K DP+K E
Sbjct: 373 KDIPRLENPARTEEKPEAKPRREEKPARADKPARSDADKREPVKREADKRDPVKR---EA 429
Query: 459 TKRAGKGRMKREGRNGDDTG 478
KR KG +R+ + DD G
Sbjct: 430 DKRDRKGGERRDRK--DDRG 447
Score = 41 (19.5 bits), Expect = 6.7e-07, Sum P(3) = 6.7e-07
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
RA P +V+ C + L+ V +++F K L L +A L+ +++
Sbjct: 68 RARARMPRSLVL----CPTRELAAQV--AENFDTYTKHLKLTKALLIGGVSFKEQ----D 117
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
A+I RG L+ + D + KL+L I+ + E + D
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLD 161
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 194 (73.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 61/194 (31%), Positives = 94/194 (48%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 137 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 192
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 193 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 247
Query: 149 DKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 248 FKDTYLVYILNELA-GNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 306
Query: 209 EFNAGLFDYLIATD 222
+F A L+ATD
Sbjct: 307 KFKAKARSILLATD 320
Score = 101 (40.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
RG+D +V V+NF++P ++ Y+HR+GRT RA
Sbjct: 324 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARA 356
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 165 (63.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 262
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 263 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 319
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 320 SGSSRVLITTD 330
Score = 131 (51.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 390
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 167 (63.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 55/201 (27%), Positives = 100/201 (49%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
D++A +G +V+ TPG + + LS G++ D+++I LDEAD +LS G++D +
Sbjct: 135 DIQALQSGV-HVVVGTPGRVFEMLSRGIINR----DTIRIFCLDEADEMLSRGFKDQIYE 189
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ +P+ Q L SAT + + + + NP + + KDE+ + ++QF+++
Sbjct: 190 IFRFLPKTIQVGLFSATMTDETLGITSKFMQNPVSILVK-----KDELTLEGIRQFYVNV 244
Query: 146 S-ERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
E+ K + + ++IF NT +D K+ +KF + S + + Q
Sbjct: 245 GVEQGKFEVLTDLYETLSITQ-SVIFCNTRRKVDW-LTSKMTEQKFTVSST--HGD--QK 298
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R IL+ F +G LI TD
Sbjct: 299 DRDGILQAFRSGATRVLITTD 319
Score = 128 (50.1 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
DQ D G + + +S + + ++ + RGID + V VINF++P N Y+HRIGR+G
Sbjct: 296 DQKDRDGILQAFRSGA-TRVLITTDL-LARGIDVQQVSLVINFDLPTNIENYIHRIGRSG 353
Query: 290 RAYNTGASVSLVSPDEMKIFEEI 312
R G +++ ++ E +E+
Sbjct: 354 RFGRKGVAINFITDAERGQIDEL 376
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 162 (62.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 53/201 (26%), Positives = 95/201 (47%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
++++ A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D +
Sbjct: 147 NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIY 202
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +DV ++ + P + + K+E+ + ++QF+I+
Sbjct: 203 EIFQKLSTNIQVVLLSATMPADVLEVTTKFMREPVRILVK-----KEELTLEGIKQFYIN 257
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 258 VEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTE-KMHARDFTVSA--LHGDMDQK 314
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I+ EF +G LI TD
Sbjct: 315 ERDIIMREFRSGSSRVLITTD 335
Score = 134 (52.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ ++ +I +I++F
Sbjct: 337 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF 395
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 171 (65.3 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 56/218 (25%), Positives = 96/218 (44%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL K ++++V+ T D L P +++ TPG + GV K +
Sbjct: 244 ELSK-YLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCA---- 298
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
+LV+DEAD LLS ++ ++ L +P Q L+ SAT V K L PYI+ L
Sbjct: 299 MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINL- 357
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFL 184
D++ V Q++ ER K + + ++IF N+++ L +
Sbjct: 358 -----MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQ-SIIFCNSVNRVELLAKKI 411
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ G ++A++ Q+ R + +F G L+ TD
Sbjct: 412 TELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Score = 128 (50.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVG 317
RGID + V+ VINF+ P+ + Y+HR+GR+GR + G +V+LV+ D K+++
Sbjct: 453 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQT------ 506
Query: 318 DDENEDSNIIAPFPLLAQNAV 338
E E I P P L A+
Sbjct: 507 --EQELGTEIKPIPSLIDKAI 525
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 165 (63.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 52/191 (27%), Positives = 92/191 (48%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 169 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 224
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 225 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 279
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 280 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 336
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 337 SGSSRVLITTD 347
Score = 131 (51.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 349 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 407
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 160 (61.4 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 49/189 (25%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IV TPG + + VL++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 147 IVSGTPGRVFDMIKRRVLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 202
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 203 VLISATLPHEILEMTSKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 257
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF AG
Sbjct: 258 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERDEIMKEFRAG 314
Query: 214 LFDYLIATD 222
LI TD
Sbjct: 315 QSRVLITTD 323
Score = 135 (52.6 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V VIN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 327 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 386
Query: 319 DENE 322
+E
Sbjct: 387 QIDE 390
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 166 (63.5 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 48/186 (25%), Positives = 88/186 (47%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IV TPG + ++ L ++ +K+++LDEAD +LS G++ + + +P G Q
Sbjct: 153 IVSGTPGRVLDMITRKSLPTRH----IKMMILDEADEMLSLGFQQQINDVYRYLPNGTQI 208
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT + DV + + + P + L +DE+ ++QF++S + D
Sbjct: 209 VLVSATLTQDVVSMTEKFMTKPVRILLK-----RDELTLDGIKQFFVSVEKEDWKFGTLC 263
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT +L + A ++ ++ Q R I++ F +G
Sbjct: 264 DIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENR 323
Query: 217 YLIATD 222
LI TD
Sbjct: 324 VLITTD 329
Score = 128 (50.1 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ RGID + V VIN+++P + Y+HRIGR+GR G +++ V +++I +I+ F
Sbjct: 331 LARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFY 390
Query: 317 GDDENE 322
+E
Sbjct: 391 STQIDE 396
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 190 (71.9 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 66/200 (33%), Positives = 94/200 (47%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKAL 86
L+ P +VIATPG + L + S +FS LK LVLDEAD LL G D DL+ +
Sbjct: 117 LSRKPHVVIATPGRLADHLRS----SNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVI 172
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-TLPEVGDVKDEVIPKNVQQFWISC 145
+P Q LL SAT + +++LK L ++ P+ EV V DE+ Q ++
Sbjct: 173 LEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTV-DEL-----DQRYLLV 226
Query: 146 SERDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
E K + + +IFT T L + L KF S L++ + Q
Sbjct: 227 PEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQ 286
Query: 203 RLHILEEFNAGLFDYLIATD 222
R L +F + +F LIATD
Sbjct: 287 RFAALAKFKSSIFKILIATD 306
Score = 101 (40.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D V VIN P Y+HR+GRT RA G S+++V+ ++ + I+
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIE 364
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 173 (66.0 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 57/190 (30%), Positives = 87/190 (45%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP--R 92
P I++ATPG + L+ G+ + F K LVLDEAD LL +E ++ ++ +P
Sbjct: 123 PHIIVATPGRLASHLNNGLKIALKFC---KFLVLDEADRLLGEDFELEIASILEHLPPPE 179
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q LL SAT + ++ KL + L+ P+I E D V + ++ +D
Sbjct: 180 KRQTLLFSATMTKNLTKLDSIALNKPFIF---EDNSKYDTVDTLKQEYIYMPAPTKDCYL 236
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
A++F N +K L K I S L++ L Q SRL L+ F +
Sbjct: 237 VYILKKHEGS---SAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKS 293
Query: 213 GLFDYLIATD 222
G L+ATD
Sbjct: 294 GKVKVLVATD 303
Score = 124 (48.7 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 233 DEGGHVDSRKSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
D+ + + K+ K K K+ V RG+D +V VIN+++ ++ Y+HR+GRT R
Sbjct: 280 DQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARF 339
Query: 292 YNTGASVSLVSPDEMKIFEEIKSFV 316
+G ++S ++P ++ + + I+ +
Sbjct: 340 GRSGRAISFITPHDVSLIKGIEEII 364
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 177 (67.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 56/189 (29%), Positives = 93/189 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+I T G + + G++ ++++ +VLDEAD + G+ D++ L +P Q
Sbjct: 136 DILIGTTGRIIDYVRQGIINL----NAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 96 CL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
L L SAT S V +L +++P +V +E KN+++ S+ DK
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPV-----KVEIAPEEKTSKNIKEEIFYPSQEDKMRL 246
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+K A++F+NT L +LE G + +L ++PQ R+ ILE+F G
Sbjct: 247 LLTLIEEDWPEK-AIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305
Query: 214 LFDYLIATD 222
D L+ATD
Sbjct: 306 QLDILVATD 314
Score = 117 (46.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+ +V V N+++P + YVHRIGRTGRA N G SVS + I++++
Sbjct: 318 RGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYI 375
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 177 (67.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 56/189 (29%), Positives = 93/189 (49%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+I T G + + G++ ++++ +VLDEAD + G+ D++ L +P Q
Sbjct: 136 DILIGTTGRIIDYVRQGIINL----NAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQ 191
Query: 96 CL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
L L SAT S V +L +++P +V +E KN+++ S+ DK
Sbjct: 192 RLNMLFSATLSMKVQELAYDHMNDPV-----KVEIAPEEKTSKNIKEEIFYPSQEDKMRL 246
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+K A++F+NT L +LE G + +L ++PQ R+ ILE+F G
Sbjct: 247 LLTLIEEDWPEK-AIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQG 305
Query: 214 LFDYLIATD 222
D L+ATD
Sbjct: 306 QLDILVATD 314
Score = 117 (46.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RG+ +V V N+++P + YVHRIGRTGRA N G SVS + I++++
Sbjct: 318 RGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIETYI 375
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 177 (67.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 64/198 (32%), Positives = 89/198 (44%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P VIATPG + + ++ S +K LVLDEAD LLS + DL+ V
Sbjct: 115 ALQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDV 174
Query: 90 IPRGC--QCLLMSATSSSDVDKLKKL--ILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+P Q LL +AT + V LK+ P + + EV V IP +Q ++
Sbjct: 175 LPTSDKRQTLLFTATITDAVRALKEKPPTPGKPPVF-MHEVETVDKVAIPSTLQISYVFV 233
Query: 146 SERDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
K + A+IF N A L+ L K + A L++E+PQ+ R
Sbjct: 234 PSYVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERT 293
Query: 205 HILEEFNAGLFDYLIATD 222
+ L F AG LIATD
Sbjct: 294 NSLHRFKAGAARILIATD 311
Score = 117 (46.2 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG- 317
RG+D V VINF++P + ++HR+GRT RA G +VS++ ++ + I+ +
Sbjct: 315 RGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGEKDIDRIQSIEERINK 374
Query: 318 -----DDENEDSNII 327
+D N+D N+I
Sbjct: 375 KMELLEDVNDD-NVI 388
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 170 (64.9 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 58/219 (26%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K KV+ T D L +VIATPG + + GV + + +
Sbjct: 185 IQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV----EHV 240
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEA+ LLS + ++ + +P+ Q LL SAT V K L PY + L
Sbjct: 241 QMIVLDEANKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 300
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 301 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 353
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 354 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Score = 126 (49.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 396 RGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGT 455
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I P P ++ Y +E V
Sbjct: 456 E-------IKPIPSNIDKSLYVAEYHSEPV 478
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 190 (71.9 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 66/200 (33%), Positives = 94/200 (47%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKAL 86
L+ P +VIATPG + L + S +FS LK LVLDEAD LL G D DL+ +
Sbjct: 120 LSRKPHVVIATPGRLADHLRS----SNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVI 175
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-TLPEVGDVKDEVIPKNVQQFWISC 145
+P Q LL SAT + +++LK L ++ P+ EV V DE+ Q ++
Sbjct: 176 LEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTV-DEL-----DQRYLLV 229
Query: 146 SERDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
E K + + +IFT T L + L KF S L++ + Q
Sbjct: 230 PEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQ 289
Query: 203 RLHILEEFNAGLFDYLIATD 222
R L +F + +F LIATD
Sbjct: 290 RFAALAKFKSSIFKILIATD 309
Score = 104 (41.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 33/119 (27%), Positives = 54/119 (45%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 314
RG+D V VIN P Y+HR+GRT RA G S+++V+ ++ + EEIK
Sbjct: 313 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIHLVHAIEEEIKL 372
Query: 315 FVGDDENEDS---NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA--VRESRAQDLRNE 368
+ + E+ +I+ + + L Y D K + K + E + DL +
Sbjct: 373 KLQEFSVEEKLVLDILTHVNVTRRECEIELEYMDFDEKKEINKRKQMILEGKDPDLEEK 431
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 160 (61.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 52/201 (25%), Positives = 96/201 (47%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
+D++ A P IV+ TPG + L+ L K +K+ LDEAD +LS G++D +
Sbjct: 142 NDVQKLQADVPHIVVGTPGRVFDMLNRRYLSPKY----IKMFALDEADEMLSRGFKDQIY 197
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ + Q +L+SAT +V ++ + +P + + K+E+ + ++QF+I+
Sbjct: 198 EIFQKLATDTQVILLSATMPQEVLEVTTKFMRDPVRILVK-----KEELTLEGIRQFYIN 252
Query: 145 CSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ + +A+IF NT +D K+ F + + L+ ++ Q
Sbjct: 253 VEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--LHGDMEQK 309
Query: 202 SRLHILEEFNAGLFDYLIATD 222
R I++EF +G LI TD
Sbjct: 310 ERDVIMKEFRSGSSRVLITTD 330
Score = 134 (52.2 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++++ D+ + +I++F
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITEDDKRTLRDIETF 390
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 171 (65.3 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 57/218 (26%), Positives = 96/218 (44%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL K + ++V+ T D L P +++ TPG + GV K +
Sbjct: 214 ELSK-YLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCA---- 268
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
+LV+DEAD LLS ++ L+ L +P+ Q L+ SAT V K L PY++ L
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINL- 327
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFL 184
D++ V Q++ ER K + + ++IF N+++ L +
Sbjct: 328 -----MDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQ-SIIFCNSVNRVELLAKKI 381
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ G ++A++ Q+ R + EF G L+ TD
Sbjct: 382 TELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Score = 124 (48.7 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFE 310
RGID + V+ VINF+ P+ + Y+HR+GR+GR + G +V+LV+ D K+++
Sbjct: 423 RGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQ 475
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 176 (67.0 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 52/189 (27%), Positives = 93/189 (49%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
I+I TPG + C ++ +++ VLDEAD+++ + G+ D + +P GC
Sbjct: 114 IIIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFSDQSIRIQRALPSGC 169
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 170 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLNNIRQYYVLCGNRKDKYQA 224
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL + R I++ F G
Sbjct: 225 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRAAIIQRFRDG 283
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 284 KEKVLITTN 292
Score = 112 (44.5 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 296 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 355
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 356 QDHFNSNIKQLDPEDMDEI 374
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 165 (63.1 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 60/218 (27%), Positives = 98/218 (44%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
V +++ + P + L+ P IV+ TPG + + +G L K+ S LV+DE
Sbjct: 239 VNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNIS----FLVVDE 294
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD L+ G+E + + I Q L SAT V + + P L ++G
Sbjct: 295 ADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRL---QIGS-S 350
Query: 131 DEVIPKNV-QQFWISCSERDKXXXXXXXXXXX-XVQKKA--LIFTNTIDMAFRLKLFLEK 186
KN+ Q+F I ++ DK +KA LIFT T A LK +++
Sbjct: 351 QLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQS 410
Query: 187 FG--IKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
G ++ L+ ++ QN R I+++F D ++ATD
Sbjct: 411 NGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATD 448
Score = 131 (51.2 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP---DEMKIFEEIKSF 315
RG+D K + VINF +P + YVHRIGRTGRA G S S++S D+M++ ++ +
Sbjct: 452 RGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNL 511
Query: 316 VGDDENE 322
+ E E
Sbjct: 512 LQRSEQE 518
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 175 (66.7 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 63/222 (28%), Positives = 108/222 (48%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL G ++K V L +P L ++IATPG + L + QS +K
Sbjct: 293 ELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPG---RLLDI-IKQSSVELCGVK 348
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTL 123
I+V+DEAD +L G++ + + IP CQ +L+SAT + +++L +LHNP I+T
Sbjct: 349 IVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIIT- 407
Query: 124 PEVGDVKDEVIP-KNVQQF--WISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL 180
G+ K+ +P NV+Q W+ + K + L+F + A L
Sbjct: 408 ---GE-KN--LPCANVRQIILWVEDPAKKKKLFEILNDKKLF-KPPVLVFVDCKLGADLL 460
Query: 181 KLFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++K G+KS +++E Q R +IL+ G ++ +++T
Sbjct: 461 SEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
Score = 121 (47.7 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 314
GV+ RG+D +V V+NF+MP + YVH+IGR GR G +++ ++ + ++F +I
Sbjct: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAK 562
Query: 315 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEILNS 372
V + + I P LL + + + + K V + D+ +++ NS
Sbjct: 563 RV-----KPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANLMDIIRKHDKSNS 617
Query: 373 EK 374
+K
Sbjct: 618 QK 619
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 149 (57.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 242 KSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
KS K K +L V RG+D +V VINF++PQN Y+HRIGRTGRA G +++L
Sbjct: 283 KSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITL 342
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR--AEDVAKSVTK 354
++ E K+ + I+ + + I P P+ +E R++ A+ + ++TK
Sbjct: 343 INYRERKLLKAIEEAINKRLKRE---ILPEPV----DLEEARFKKIAKKILDTITK 391
Score = 144 (55.7 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 49/188 (26%), Positives = 91/188 (48%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
++++ TPG + L + K+F + +KI++LDEAD +L G+ DD++A+ +
Sbjct: 121 EVIVGTPG---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT + + + K L Y T+ VG +++ +P ++Q + E +K
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGG-Y-KTVKLVG--REKTVPA-IRQVYYELPETEKIEGL 230
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ +A++F T + L G + L+ ++ Q R ++ F AG
Sbjct: 231 VSILNSE-LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 215 FDYLIATD 222
+ L+ATD
Sbjct: 290 TELLVATD 297
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 149 (57.5 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 40/116 (34%), Positives = 64/116 (55%)
Query: 242 KSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
KS K K +L V RG+D +V VINF++PQN Y+HRIGRTGRA G +++L
Sbjct: 283 KSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITL 342
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYR--AEDVAKSVTK 354
++ E K+ + I+ + + I P P+ +E R++ A+ + ++TK
Sbjct: 343 INYRERKLLKAIEEAINKRLKRE---ILPEPV----DLEEARFKKIAKKILDTITK 391
Score = 144 (55.7 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 49/188 (26%), Positives = 91/188 (48%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
++++ TPG + L + K+F + +KI++LDEAD +L G+ DD++A+ +
Sbjct: 121 EVIVGTPG---RILDH--IGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ 175
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT + + + K L Y T+ VG +++ +P ++Q + E +K
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGG-Y-KTVKLVG--REKTVPA-IRQVYYELPETEKIEGL 230
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ +A++F T + L G + L+ ++ Q R ++ F AG
Sbjct: 231 VSILNSE-LPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGK 289
Query: 215 FDYLIATD 222
+ L+ATD
Sbjct: 290 TELLVATD 297
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 157 (60.3 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 60/213 (28%), Positives = 88/213 (41%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+L VV + P AL D+V+ TPG + G LQ L +LVLDEA
Sbjct: 126 RLSVVSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQL----GGLSVLVLDEA 181
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP-YILT-LPEVGDV 129
D +L G+ D++ + IP Q +L SAT + L + + P +I P V
Sbjct: 182 DEMLDLGFLPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAV 241
Query: 130 KDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D +QF DK + +IFT T A ++ L + G
Sbjct: 242 HDAT-----EQFVYRAHALDKVELVSRVLQARD-RGATMIFTRTKRTAQKVADELTERGF 295
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
++ +L Q +R L+ F G D L+ATD
Sbjct: 296 AVGAVHGDLGQLAREKALKAFRTGGIDVLVATD 328
Score = 138 (53.6 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID +V VIN++ P++ YVHRIGRTGRA TG +V+LV DE+ + I +G
Sbjct: 332 RGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELPRWSMIDQALGL 391
Query: 319 DENEDSNIIAPFP-LLAQNAV 338
+ + + P L A+ A+
Sbjct: 392 GSPDPAETYSNSPHLYAELAI 412
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 162 (62.1 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 52/187 (27%), Positives = 91/187 (48%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + TG + K+ L++ VLDEAD +L G+ D++++ + +P+ Q
Sbjct: 127 DILVATPGRLLDLIETGDINFKA----LEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
LL SAT ++++ L + IL +P + + V +++ ++V ++
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQIT-AETVTIDLVNQSVYHL-----DKSNKVPLL 236
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+K LIF T A + LEK I +A L++ Q R L+ F
Sbjct: 237 FNILTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTL 296
Query: 216 DYLIATD 222
L+ATD
Sbjct: 297 RVLVATD 303
Score = 127 (49.8 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RGID N+ VIN+ +P++ Y+HRIGRT RA +G ++S ++++ I++ +G
Sbjct: 307 RGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIENSIG 365
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 165 (63.1 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 57/219 (26%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I + K +KV+ T D L ++IATPG + + GV + D +
Sbjct: 177 INMSKHLGGIKVMATTGGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKV----DKV 232
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
++ V+DEAD LLS + ++ + + +P+ Q LL SAT V K L PY + L
Sbjct: 233 QMAVMDEADKLLSQDFVVLIEDIISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINL 292
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
DE+ K + Q++ +ER K + + ++IF N+ L
Sbjct: 293 ------MDELTLKGITQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSTQRVELLAKK 345
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 346 ITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTD 384
Score = 126 (49.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 22/47 (46%), Positives = 36/47 (76%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RGID + V+ VINF+ P+NA Y+HRIGR+GR + G +++L++ ++
Sbjct: 388 RGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITSED 434
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 175 (66.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 61/219 (27%), Positives = 107/219 (48%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL G +++ L +PA L ++IATPG + + QS ++K
Sbjct: 281 ELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMK----QSSVDLGNIK 336
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
I+V+DEAD +L G+++ + + +P+ CQ +L+SAT + +++L +LH+P + L
Sbjct: 337 IVVVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASRLLHDP-VRVL- 394
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLKLF 183
G+ K+ P +V+Q + E K + K L+F + A L
Sbjct: 395 -AGE-KNLPCP-SVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEA 451
Query: 184 LEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
+EK G+KS +++E Q R ILE G +D +++T
Sbjct: 452 VEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVST 490
Score = 118 (46.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 314
GV+ RG+D +V V+NF+MP + YVH++GR GR G +++ ++ + ++F +I
Sbjct: 491 GVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAK 550
Query: 315 FVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL--RNEILNS 372
V + + + P LL + + + + K + V + D+ +++ NS
Sbjct: 551 RV-----KPTGSLLPPQLLNSPYLHEQKRKEQQKDKQMQNDLVTGANLMDIIRKHDKSNS 605
Query: 373 EK 374
+K
Sbjct: 606 QK 607
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 158 (60.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 56/197 (28%), Positives = 95/197 (48%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
R L DI+I T G + + G+ K+ ++++VLDEAD + G+ D++ +
Sbjct: 125 RLELEAGVDILIGTCGRLIDYMKQGIYNLKN----IEVIVLDEADRMFDLGFIKDIRYMF 180
Query: 88 AVIPRGCQCL--LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+P + L L SAT S V +L +++P T EV + + + + ++ +
Sbjct: 181 DKMPPATERLSMLFSATLSFRVKELAFDHMNDP---TSVEV-EPEQKTNSRISEELFYPS 236
Query: 146 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+E DK +K A++F NT + ++ L I+ +L ++PQ RL
Sbjct: 237 NE-DKMTLLQTLIEEDWPEK-AIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLK 294
Query: 206 ILEEFNAGLFDYLIATD 222
ILEEF G D L+ATD
Sbjct: 295 ILEEFTDGTVDILVATD 311
Score = 130 (50.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+ +V V N+++P + YVHRIGRTGRA TG ++SL + EI++++G
Sbjct: 315 RGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEIETYIGH 374
Query: 319 D 319
D
Sbjct: 375 D 375
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 175 (66.7 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 53/189 (28%), Positives = 93/189 (49%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C ++ +++ VLDEAD+++ + G+ED + +P C
Sbjct: 218 IVIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFEDQSIRIQRALPSEC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 274 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLNNIRQYYVLCGNRKDKYQA 328
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL + R I++ F G
Sbjct: 329 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDG 387
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 388 KEKVLITTN 396
Score = 113 (44.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 400 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 459
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 460 QDHFNSSIKQLDPEDMDEI 478
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 175 (66.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 52/189 (27%), Positives = 92/189 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
I+I TPG + C ++ +++ VLDEAD+++ + G+ D + +P GC
Sbjct: 197 IIIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFSDQSIRIQRALPSGC 252
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 253 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLNNIRQYYVLCGNRKDKYQA 307
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L EL + R I++ F G
Sbjct: 308 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLRGELTVDQRAAIIQRFRDG 366
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 367 KEKVLITTN 375
Score = 112 (44.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 379 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 438
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 439 QDHFNSNIKQLDPEDMDEI 457
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 157 (60.3 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM-KIFEEIKSF 315
V RGID KNV T+I++++P +A YVHR GRT RA+ G S++L+ P+E K + KSF
Sbjct: 562 VARGIDIKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCKSF 621
Score = 100 (40.3 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+E + +KVV + M + L P+IV+ATPG + + +S G SL
Sbjct: 299 LENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELH-SL 357
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIP 91
VLDEAD ++ G+ +L+++ ++P
Sbjct: 358 SFFVLDEADRMVERGHFRELQSILDLLP 385
Score = 81 (33.6 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 135 PKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
PK +++ +I C E++K Q + ++F ++ + L+ G+ L
Sbjct: 475 PK-IEESFIKCEEKEKDAYLYYILSVHG-QGRTIVFCTSVTDLRHISGLLKILGLDVCTL 532
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATD 222
+E+ Q +RL ++ F A LIATD
Sbjct: 533 FSEMKQRARLKSIDRFRASENGILIATD 560
Score = 47 (21.6 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 222 DDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254
DD +T++K + + + +K KK K K +E
Sbjct: 126 DDEETRKKKEKKAKRNKEKKKEKKKKKQKKINE 158
Score = 43 (20.2 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 27/137 (19%), Positives = 58/137 (42%)
Query: 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-PQNAAG-YVHRIGR 287
D+ E VD+ + +K A+L+ ++ + + T+++ M P+ +G Y +G
Sbjct: 679 DEESEEERVDNVRQRKATSARLNK----LK----EELSTLLSHPMQPKKFSGRYFAGVGV 730
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
+ N + +M+I +IK N+ N I P L E L+ + +
Sbjct: 731 STLMQNQFVELKKQKQAQMQIGGDIKRRKLVVINQ--NCIEPLQALRAGGNEMLKMKGQS 788
Query: 348 VAKSVTKIAVRESRAQD 364
K ++++ R ++
Sbjct: 789 AEKRRDIASLKKKRKEE 805
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 149 (57.5 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 46/189 (24%), Positives = 92/189 (48%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+L+LDE+D +LS G++D + + +P Q
Sbjct: 156 VVSGTPGRVCDMIKRRSLRTRA----IKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQV 211
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
L+SAT ++ ++ + P + + +DE+ + ++QF+++ + +
Sbjct: 212 CLVSATLPHEILEMTSKFMTEPVKILVK-----RDELTLEGIKQFFVAVEKEEWKFDTLC 266
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I+ EF +G
Sbjct: 267 DLYDTLTITQAVIFCNTKRKVDYLSE-KMRSHNFTVSS--MHGDMPQKERDAIMNEFRSG 323
Query: 214 LFDYLIATD 222
LI TD
Sbjct: 324 DSRVLITTD 332
Score = 138 (53.6 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V VIN+++P N Y+HRIGR+GR G +++ V D++KI +I+ +
Sbjct: 336 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYST 395
Query: 319 DENE 322
+E
Sbjct: 396 QIDE 399
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 156 (60.0 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 55/190 (28%), Positives = 86/190 (45%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIP-- 91
D+++ATPG + L G + S ++ +K LVLDEAD +L G+E ++ + +P
Sbjct: 289 DLLVATPGRLNDLLERGKV---SLAN-IKYLVLDEADRMLDMGFEPQIRHIVEECDMPSV 344
Query: 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 151
Q L+ SAT D+ L + L N L++ VG + N+ Q + + DK
Sbjct: 345 ENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSE-----NITQRILYVDDMDKK 399
Query: 152 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+ LIF T MA +L FL K+ ++ + Q R L F
Sbjct: 400 SALLDLLSAEH-KGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFK 458
Query: 212 AGLFDYLIAT 221
A + D L+AT
Sbjct: 459 ANVADILVAT 468
Score = 136 (52.9 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D NV VIN+++P + YVHRIGRTGRA NTG + S + + I + + + +
Sbjct: 473 RGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNE 532
Query: 319 DENE 322
E
Sbjct: 533 ANQE 536
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+ RGC L+ + +D+ + K+ L N L L E + D
Sbjct: 284 VDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLD 325
>FB|FBgn0024804 [details] [associations]
symbol:Dbp80 "Dead box protein 80" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0044614 "nuclear pore
cytoplasmic filaments" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0015031 GO:GO:0031965 GO:GO:0005643 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AF005239 ProteinModelPortal:O61305 SMR:O61305 PaxDb:O61305
PRIDE:O61305 FlyBase:FBgn0024804 InParanoid:O61305
OrthoDB:EOG4BCC38 Bgee:O61305 GermOnline:CG17023 Uniprot:O61305
Length = 460
Score = 173 (66.0 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 55/189 (29%), Positives = 94/189 (49%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGC 94
I+I TPG K L G+ + + F + + VLDEAD++++ G+ D + ++ C
Sbjct: 194 ILIGTPG---KLLDWGI-KFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHC 249
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKXXX 153
Q L SAT +V +LI+ +P I+ L +++E +N++Q+++ C +E K
Sbjct: 250 QMLFFSATYGKEVMDFARLIVADPTIIRL-----MREEESLENIKQYYVKCKNEEGKYNA 304
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
V + A+IF +T A L + G A+L +L RL +L+ F +G
Sbjct: 305 IQNIYGCISVGQ-AIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSG 363
Query: 214 LFDYLIATD 222
L LI T+
Sbjct: 364 LEKVLITTN 372
Score = 113 (44.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE-MKIFEE 311
RGID + + V+NF++P + G Y+HRIGRTGR +G +++L++ ++ MK+ +
Sbjct: 376 RGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKTMKVCSD 435
Query: 312 IK 313
I+
Sbjct: 436 IE 437
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 169 (64.5 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
I+I TPG + C ++ +++ VLDEAD+++ + G+ D + +P C
Sbjct: 104 IIIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFSDQSIRIQRALPSEC 159
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 160 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLSNIRQYYVLCENRKDKYQA 214
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL + R I++ F G
Sbjct: 215 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDG 273
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 274 KEKVLITTN 282
Score = 113 (44.8 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 286 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 345
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 346 QDHFNSSIKQLDPEDMDEI 364
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 152 (58.6 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 48/189 (25%), Positives = 94/189 (49%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+L+LDEAD LL+ G+++ + + +P G Q
Sbjct: 142 VVSGTPGRVTDMIRRRNLRTRN----VKMLILDEADELLNQGFKEQIYDIYRYLPPGTQV 197
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+++SAT DV ++ NP + + +DE+ + ++Q++I+ + +
Sbjct: 198 VVVSATLPQDVLEMTNKFTTNPVRILVK-----RDELTLEGLKQYFIAVEKEEWKFDTLC 252
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF N+ +D K+ F + S ++ E+PQ R I+++F G
Sbjct: 253 DLYDTLTITQAVIFCNSRRKVDWLTE-KMREANFTVTS--MHGEMPQKERDAIMQDFRQG 309
Query: 214 LFDYLIATD 222
LI TD
Sbjct: 310 NSRVLICTD 318
Score = 133 (51.9 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
RGID + V VIN+++P N Y+HRIGR+GR G +++ V+ ++++I +I+ +
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQY 378
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 154 (59.3 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 43/186 (23%), Positives = 93/186 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ L + +P G Q
Sbjct: 147 VVSGTPGRVFDMIRRRNLRTRA----IKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQV 202
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 203 VLLSATLPHEILEMTSKFMTDPIRILVK-----RDELTLEGIKQFFVAVDREEWKFDTLI 257
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A++F NT L +++ + ++ ++ Q R +++EF AG
Sbjct: 258 DLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTR 317
Query: 217 YLIATD 222
LI+TD
Sbjct: 318 VLISTD 323
Score = 131 (51.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V VIN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 327 RGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYST 386
Query: 319 DENE 322
+E
Sbjct: 387 QIDE 390
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 154 (59.3 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 43/186 (23%), Positives = 93/186 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ L + +P G Q
Sbjct: 147 VVSGTPGRVFDMIRRRNLRTRA----IKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQV 202
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 203 VLLSATLPHEILEMTSKFMTDPIRILVK-----RDELTLEGIKQFFVAVDREEWKFDTLI 257
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A++F NT L +++ + ++ ++ Q R +++EF AG
Sbjct: 258 DLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTR 317
Query: 217 YLIATD 222
LI+TD
Sbjct: 318 VLISTD 323
Score = 131 (51.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V VIN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 327 RGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQYYST 386
Query: 319 DENE 322
+E
Sbjct: 387 QIDE 390
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 152 (58.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 53/211 (25%), Positives = 85/211 (40%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
QL V+ + + A L +V+ TPG M L L + LVLDEA
Sbjct: 110 QLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLDLSR----VDFLVLDEA 165
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L+ G+ DD++ + + P Q L SAT + KL LH+P+ EV
Sbjct: 166 DEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPF-----EVTCKAK 220
Query: 132 EVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ +N+ Q +I + + ++F T + L G +
Sbjct: 221 TAVAENISQSYIQVARKMDALTRVLEVEPFEAM---IVFVRTKQATEEIAEKLRARGFSA 277
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD 222
A ++ ++PQ R + G D L+ATD
Sbjct: 278 AAISGDVPQAQRERTITALRDGDIDILVATD 308
Score = 137 (53.3 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D + + V+N+++P + YVHRIGRTGRA +GA++ VSP E+ + + I+
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 159 (61.0 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 50/193 (25%), Positives = 89/193 (46%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P +++ TPG + + G L+ ++L+ LVLDEAD +L G+ DD++ +
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRGTLKL----ETLQALVLDEADEMLKMGFIDDIEWILEH 175
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
P Q L SAT +++K++ N ++ + +++Q ++ S+ +
Sbjct: 176 TPPQRQLALFSATMP---EQIKRVA--NKHLKNATNISIAASHTTVDSIEQRFVQVSQHN 230
Query: 150 KXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + +IF T + L LE G S+ L+ ++ Q +R +E+
Sbjct: 231 KLEALVRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQ 289
Query: 210 FNAGLFDYLIATD 222
G D LIATD
Sbjct: 290 LKNGKLDILIATD 302
Score = 130 (50.8 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D + + V+N+++P + YVHRIGRTGRA TG ++ V+ EM++ I+
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 167 (63.8 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 57/191 (29%), Positives = 87/191 (45%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+IVIATPG + LS G K + LVLDEAD +L G+E ++ + + I Q
Sbjct: 406 EIVIATPGRLIDFLSAGSTNLKRCT----YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
L+ SAT +V +L + L N YI +G ++ N++Q C E K
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGN-YIQI--NIGSLELSA-NHNIRQVVDVCDEFSKEEKLK 517
Query: 156 XXXX----XXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
K +IF T L F+ FG++ ++ + Q+ R +L EF
Sbjct: 518 TLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFR 577
Query: 212 AGLFDYLIATD 222
+G + L+ATD
Sbjct: 578 SGKSNILVATD 588
Score = 123 (48.4 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D + VINF+ PQN+ Y+HRIGRTGR+ G S + + + K + K+ V D
Sbjct: 592 RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAK---QAKALV-D 647
Query: 319 DENEDSNIIAP-FPLLAQNA 337
E + I P LA+N+
Sbjct: 648 VLREANQEINPALENLARNS 667
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 147 (56.8 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 58/212 (27%), Positives = 91/212 (42%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K++ + +P +L +VI TPG + L G L + L+ LVLDEAD
Sbjct: 102 IKILTICGGVPFGPQLGSLEHGAHVVIGTPGRLLDHLRRGSLDLSA----LRTLVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKD 131
+L G++DD+ AL A P Q LL SAT + + + P +++ EV G+
Sbjct: 158 RMLDMGFQDDISALIAAAPPKRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAI 217
Query: 132 EVIPKNVQQFW-ISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E Q F+ + +R + + ALIF NT + L G
Sbjct: 218 E------QVFYEVDSGQRIEAVERILGHYR---PESALIFCNTKLECQEVANALAVRGYA 268
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ ++ +L Q R +L F L+ATD
Sbjct: 269 ALAIHGDLDQRERDRVLVRFANRSASVLVATD 300
Score = 137 (53.3 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D K + VIN+E+ +N + HRIGRTGRA G +VSLV+P E ++ I G
Sbjct: 304 RGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAAIADVPGS 363
Query: 319 D-ENEDSNIIAP 329
D + +AP
Sbjct: 364 IIARGDLSTLAP 375
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 169 (64.5 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
I+I TPG + C ++ +++ VLDEAD+++ + G+ D + +P C
Sbjct: 197 IIIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFSDQSIRIQRALPSEC 252
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 253 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLSNIRQYYVLCENRKDKYQA 307
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL + R I++ F G
Sbjct: 308 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDG 366
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 367 KEKVLITTN 375
Score = 113 (44.8 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 379 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 438
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 439 QDHFNSSIKQLDPEDMDEI 457
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 162 (62.1 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 59/198 (29%), Positives = 89/198 (44%)
Query: 29 AAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 86
AAL A PDI+IATPG + L SF S+++L+LDEAD +L +E+ +K +
Sbjct: 331 AALRAAXPDILIATPGRLIDHLHN----CPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 386
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISC 145
+ Q +L SAT + +V L + L NP + + + +V P Q+F I
Sbjct: 387 IRMCSLHRQTMLFSATMTDEVKDLASVSLKNPVRIFV----NSNTDVAPFLRQEFIRIRP 442
Query: 146 SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR-L 204
+ ++FT T A R+ + L G++ L+ L Q R L
Sbjct: 443 NREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXL 502
Query: 205 HILEEFNAGLFDYLIATD 222
L F D L+ATD
Sbjct: 503 EALWRFKDEQIDILVATD 520
Score = 126 (49.4 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D + V TVINF MP YVHR+GRT RA G SVSL+
Sbjct: 524 RGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLL 566
Score = 41 (19.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 223 DTQTKEKDQSDEGGHVDSRKSK---KHPKAKLDSEF 255
+ +T +D+ +EG V RK K K+ A + +F
Sbjct: 45 EPETDSEDEEEEGPIVLGRKQKALQKNRSADFNPDF 80
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 165 (63.1 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 58/219 (26%), Positives = 96/219 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
I++ K +KV+ T D L +VIATPG + + GV + +
Sbjct: 187 IQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKV----GQV 242
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+++VLDEAD LLS + ++ + + + + Q LL SAT V K L PY + L
Sbjct: 243 QMIVLDEADKLLSQDFVQMMEEILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINL 302
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLF 183
E E+ K V Q++ +ER K + + ++IF N+ L
Sbjct: 303 ME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQ-SIIFCNSSQRVELLAKK 355
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ TD
Sbjct: 356 ISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 394
Score = 118 (46.6 bits), Expect = 7.0e-17, Sum P(2) = 7.0e-17
Identities = 28/88 (31%), Positives = 48/88 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ Y+HRIGR+GR + G +++L++ D+ + I+ +G
Sbjct: 398 RGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGT 457
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAE 346
+ I P P ++ Y +E
Sbjct: 458 E-------IKPIPSSIDKSLYVAEYHSE 478
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 156 (60.0 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 33/96 (34%), Positives = 55/96 (57%)
Query: 229 KDQSDEGGHVDS-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
KDQSD +++ RK++K D +G+DF+ + VINF+MP++ YVHRIGR
Sbjct: 475 KDQSDRHAGIEAFRKNEKDVLVATDV---ASKGLDFQGIEHVINFDMPEDIENYVHRIGR 531
Query: 288 TGRAYNTGASVSLVSP-DEMKIFEEIKSFVGDDENE 322
TGR+ G + + ++ EM + ++K + + E
Sbjct: 532 TGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQE 567
Score = 131 (51.2 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 50/187 (26%), Positives = 81/187 (43%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IV+ATPG + L+ ++ + + LVLDEAD +L G+ED++K++ Q
Sbjct: 325 IVVATPGRLSDMLTKKIINL----EVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQT 380
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
LL SAT + K L P ++ + G V+ + +F R +
Sbjct: 381 LLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQE--LEF-----VRSENKLVRV 433
Query: 157 XXXXXXVQKKALIFTNT-IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K LIF +D+ + L K G++ A ++ Q+ R +E F
Sbjct: 434 LECLQKTSPKVLIFAEKKVDVDNIYEYLLVK-GVEVASIHGGKDQSDRHAGIEAFRKNEK 492
Query: 216 DYLIATD 222
D L+ATD
Sbjct: 493 DVLVATD 499
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 150 (57.9 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 52/191 (27%), Positives = 88/191 (46%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 207
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + L G ++QF+I+ +
Sbjct: 208 QVVLLSATMPSDVLEVTKKFMRDPIRIXLTLEG----------IRQFYINVEREEWKLDT 257
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 258 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 314
Query: 212 AGLFDYLIATD 222
+G LI TD
Sbjct: 315 SGSSRVLITTD 325
Score = 131 (51.2 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 327 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 385
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 164 (62.8 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 59/230 (25%), Positives = 98/230 (42%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
++L + L + + L D++IATPG + G K ++ L++DE
Sbjct: 102 LKLTMALLIGGVSFKEQETLLQRGVDVLIATPGRLMDQFDRG----KLLMMGVETLIIDE 157
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ D++ + A +P Q LL SAT +D+ +L K +P + EV +
Sbjct: 158 ADRMLDMGFIPDIEKICAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKI---EV--TR 212
Query: 131 DEVIPKNVQQFWISCSERD-KXXXXXXXXXXXXVQ-KKALIFTNTIDMAFRLKLFLEKFG 188
+ + QF + D K K ++F N + L K G
Sbjct: 213 PAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHG 272
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+A ++ +LPQ+ R L+ F G L+A+D + D D G HV
Sbjct: 273 HDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASD-VAARGLDIPDVG-HV 320
Score = 120 (47.3 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V V NF P YVHRIGRTGRA TG S ++V+P + K + + +
Sbjct: 310 RGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKK 369
Query: 319 DENE 322
D E
Sbjct: 370 DVPE 373
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 152 (58.6 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 326
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 327 ASRVLISTD 335
Score = 129 (50.5 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 339 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 398
Query: 319 DENE 322
+E
Sbjct: 399 QIDE 402
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 152 (58.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 46/189 (24%), Positives = 95/189 (50%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 160 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 215
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 216 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 270
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 271 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 327
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 328 ASRVLISTD 336
Score = 129 (50.5 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 340 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 399
Query: 319 DENE 322
+E
Sbjct: 400 QIDE 403
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 160 (61.4 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 61/221 (27%), Positives = 96/221 (43%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS- 62
IEL K + ++V+ T D + ++IATPG + L L K +D
Sbjct: 147 IELAK-HLDIRVMVTTGGTILKDDILRIYQKVQLIIATPG---RILD---LMDKKVADMS 199
Query: 63 -LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+ILVLDEAD LLS ++ L + +P+ Q LL SAT V + L PY +
Sbjct: 200 HCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEI 259
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
L E E+ K V Q++ ER K + + ++IF N+ L
Sbjct: 260 NLME------ELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQ-SIIFCNSTQRVELLA 312
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
+ + G ++A++ Q R + +F GL L+ +D
Sbjct: 313 KKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSD 353
Score = 122 (48.0 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G +++L++ ++ I+ +G
Sbjct: 357 RGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGT 416
Query: 319 DENEDSNIIAP 329
+ +I P
Sbjct: 417 EIKPIPKVIDP 427
>ZFIN|ZDB-GENE-020419-30 [details] [associations]
symbol:ddx19 "DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide 19 (DBP5 homolog, yeast)" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-020419-30 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
HSSP:P10081 EMBL:AY099536 IPI:IPI00481107 RefSeq:NP_775365.1
UniGene:Dr.116877 ProteinModelPortal:Q8JGR1 SMR:Q8JGR1
STRING:Q8JGR1 GeneID:192339 KEGG:dre:192339 CTD:192339
InParanoid:Q8JGR1 NextBio:20797174 ArrayExpress:Q8JGR1
Uniprot:Q8JGR1
Length = 487
Score = 184 (69.8 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 55/209 (26%), Positives = 97/209 (46%)
Query: 16 VQLTSSMPASDLRAALAGPPDIVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLL 74
VQL ++ + L IVI TPG + C + K +K+ VLDEAD++
Sbjct: 200 VQLVYAIRGNKLERGAKLQEQIVIGTPGTVLDWCQKLKFIDPKK----IKVFVLDEADVM 255
Query: 75 LS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 133
++ G++D + ++P+ CQ LL SAT V K I+ +P I+ L + D
Sbjct: 256 IATQGHQDQSVRIQRMLPKTCQMLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLD-- 313
Query: 134 IPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193
++Q+++ C+ +++ +A+IF +T A L L + G + A+
Sbjct: 314 ---TIKQYYVICNSKEEKFQALCNIYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVAL 370
Query: 194 LNAELPQNSRLHILEEFNAGLFDYLIATD 222
L+ E+ R ++E F G L+ T+
Sbjct: 371 LSGEMQVEQRAAVIERFRDGKEKVLVTTN 399
Score = 96 (38.9 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSL 300
RGID + V VINF++P + G Y+HRIGRTGR G ++++
Sbjct: 403 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINM 450
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 169 (64.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 52/189 (27%), Positives = 92/189 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C ++ +++ VLDEAD+++ + G+ D + +P C
Sbjct: 218 IVIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFADQSIRIQRALPSEC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 274 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLNNIRQYYVLCGNRKDKYQA 328
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL + R I++ F G
Sbjct: 329 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDG 387
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 388 KEKVLITTN 396
Score = 112 (44.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RGID K V V+NF++P N A Y+HRIGRTGR G + +++ D++ + +I
Sbjct: 400 RGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 459
Query: 313 KSFVGDD 319
+ ++
Sbjct: 460 QDHFSEN 466
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 163 (62.4 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 61/222 (27%), Positives = 104/222 (46%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL G ++K V L +P L ++IATPG + L + QS +K
Sbjct: 293 ELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG---RLLDI-IKQSSVSLSGIK 348
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTL 123
I+V+DEAD +L G++ + + P CQ +L+SAT +++L +LHNP I+T
Sbjct: 349 IVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNPVRIIT- 407
Query: 124 PEVGDVKDEVIP-KNVQQF--WISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL 180
GD K+ +P +V+Q W+ + K + L+F + A L
Sbjct: 408 ---GD-KN--LPCASVRQIILWVEDPAKKKKLFEILNDQKLF-KPPVLVFVDCKLGADLL 460
Query: 181 KLFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++K G+ S +++E Q R IL+ G ++ +++T
Sbjct: 461 SEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVST 502
Score = 122 (48.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
GV+ RG+D NV V+NF+MP + YVH++GR GR G +++ ++ + ++F ++
Sbjct: 503 GVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDV 560
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 150 (57.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 46/189 (24%), Positives = 94/189 (49%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 154 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 209
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 210 CLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 264
Query: 157 XXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT +D K+ F + S ++ ++PQ R I++EF +G
Sbjct: 265 DLYDTLTITQAVIFCNTKRKVDWLTE-KMREANFTVSS--MHGDMPQKERESIMKEFRSG 321
Query: 214 LFDYLIATD 222
LI+TD
Sbjct: 322 ASRVLISTD 330
Score = 130 (50.8 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 334 RGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 393
Query: 319 DENE 322
+E
Sbjct: 394 QIDE 397
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 171 (65.3 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 63/213 (29%), Positives = 98/213 (46%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L+V + M + L +IV+ATPG + L L S LVLDEAD
Sbjct: 330 LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRAS----YLVLDEAD 385
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+ G+E ++++ I Q LL SAT V+KL + IL +P +T+ EVG ++
Sbjct: 386 RMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANED 445
Query: 133 VIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTN---TIDMAFRLKLFLEKFGI 189
+ Q + S+ +K + L+F + T+D +L L F
Sbjct: 446 I----TQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVD-EIEAQLTLNSF-- 498
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
K A L+ + Q SR+ L++F +G+ LIATD
Sbjct: 499 KVAALHGDKDQASRMETLQKFKSGVHHVLIATD 531
Score = 117 (46.2 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+KDQ+ + KS H + ++ RG+D K++ TV+N+++ ++ +VHRIGR
Sbjct: 506 DKDQASRMETLQKFKSGVH-HVLIATDVAA-RGLDIKSLKTVVNYDIAKDMDMHVHRIGR 563
Query: 288 TGRAYNT-GASVSLVSPDEMKIFEE-IKSFVGDDEN 321
TGRA + G + +LV+ E + E + S V +N
Sbjct: 564 TGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQN 599
Score = 40 (19.1 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 463 GKGRMKREGRNGDDTGK 479
G+ + KR+GR G G+
Sbjct: 612 GRFKSKRDGRKGGKKGR 628
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 168 (64.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 51/195 (26%), Positives = 85/195 (43%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L+ P +V+ATPG + + + ++ VLDEAD +L Y D LK + I
Sbjct: 204 LSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESI 263
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC--SER 148
Q LL+SAT +++++ L ++ PY + G DE ++Q ++ C + +
Sbjct: 264 SEKRQTLLLSATITNNINMLHRVSTRKPYFFE--DKGK-DDESTVDRLEQKYVVCPVAVK 320
Query: 149 DKXXXXXXXXXXXXVQKKA-LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
D K + +IF T L E G + L++++PQ RL L
Sbjct: 321 DAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAAL 380
Query: 208 EEFNAGLFDYLIATD 222
F + +I TD
Sbjct: 381 SAFRSKTLQVIICTD 395
Score = 115 (45.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D +V V+N +PQ Y+HR+GR+ RA G+++S V+ ++++ + ++ +G
Sbjct: 399 RGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGK 458
Query: 319 DENE 322
+E
Sbjct: 459 KLDE 462
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 143 (55.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 46/186 (24%), Positives = 90/186 (48%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L+++ +K+LVLDEAD LL+ G+ + + + +P Q
Sbjct: 146 VVSGTPGRVADMIRRRHLRTRH----IKMLVLDEADELLNRGFREQIYDVYRYLPPATQV 201
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+++SAT DV + + +P + L + +DE+ + ++Q++I+ + +
Sbjct: 202 VVVSATLPYDVLDMTTKFMTDP-VRVLVK----RDELTLEGIKQYFIAVEKEEWKFDTLC 256
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ E+PQ R I+++F G
Sbjct: 257 DLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSR 316
Query: 217 YLIATD 222
LI+TD
Sbjct: 317 VLISTD 322
Score = 137 (53.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 24/64 (37%), Positives = 41/64 (64%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGID + V VIN+++P N Y+HRIGR+GR G +++ V+ D+++I +I+ +
Sbjct: 326 RGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYST 385
Query: 319 DENE 322
+E
Sbjct: 386 QIDE 389
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 168 (64.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 60/220 (27%), Positives = 106/220 (48%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 63
EL G L+ L +PA R L ++IATPG + L +++ +S S+
Sbjct: 294 ELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPG---RLLD--IIKQRSVELGSI 348
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
KI+V+DEAD +L G++ + + +P CQ +L SAT + V++L +L +P +T
Sbjct: 349 KIVVVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPASVEQLACQLLRDPVAITA 408
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLKL 182
E ++ P +V+Q + E K + K L+F + A L
Sbjct: 409 GE----RNLPCP-SVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSE 463
Query: 183 FLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++K G+KS ++++ Q R +IL+ G +D +++T
Sbjct: 464 AVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVST 503
Score = 116 (45.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
GV+ RG+D V V+NF+MP + YVH+IGR GR G +++ ++ + ++F +I
Sbjct: 504 GVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDI 561
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 156 (60.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 52/208 (25%), Positives = 88/208 (42%)
Query: 15 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL 74
VV + P A+ IV+ATPG + C + + + ++ LVLDEAD +
Sbjct: 106 VVAVYGGAPMGPQLKAIRNGAQIVVATPGRL--C--DHLRRDEKVLATVNHLVLDEADEM 161
Query: 75 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 134
L G+ DDL+ + +P Q +L SAT + + + L +P + + K + +
Sbjct: 162 LKLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQS----KTQTV 217
Query: 135 PKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
++Q + K ++F T L LE G K+A L
Sbjct: 218 TA-IEQAHLLVHADQKTSAVLSLLEVEDFDA-LIMFVRTKQATLDLASALEAKGYKAAAL 275
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATD 222
N ++ QN R +++ G D ++ATD
Sbjct: 276 NGDIAQNQRERVIDSLKDGRLDIVVATD 303
Score = 127 (49.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D + V N +MP + YVHRIGRTGRA G ++ LV+P E ++ + I+ G
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 150 (57.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 55/225 (24%), Positives = 109/225 (48%)
Query: 11 VQLKVVQLTSSMPAS--DLRAALAGPPDIVIATPGC-MPKCLSTGVLQ------SKSF-S 60
VQ++ V + S+P +L A+ V G + +C+S LQ +S +
Sbjct: 122 VQIQKVGTSKSLPVKMKELHKAMGSFKQEVDLPAGHEVARCISGIQLQLLYMIRRRSLRT 181
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
++K+LVLDEAD +L+ G+++ + + +P Q +L+SAT ++ ++ + +P
Sbjct: 182 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIR 241
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMA 177
+ + +DE+ + ++QF+++ + +A+IF NT +D
Sbjct: 242 ILVK-----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 296
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
K+ F + S ++ ++PQ R I++EF +G LI+TD
Sbjct: 297 TE-KMREANFTVSS--MHGDMPQKERESIMKEFRSGASRVLISTD 338
Score = 129 (50.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 342 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 401
Query: 319 DENE 322
+E
Sbjct: 402 QIDE 405
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 151 (58.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRG 93
P+I+I TPG + + S G L K +K +LDE D +L S D++ + +IP
Sbjct: 169 PNIIIGTPGRILQLASEGALSLKE----IKQFILDECDTMLESLDMRKDVQKIFKLIPAN 224
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
Q ++ SAT S + + K ++NP + + + G ++ +QQ+++ +E K
Sbjct: 225 KQVMMFSATLSDTIRPICKKFMNNPLEIYIND-GS---KLTLHGLQQYYVPITEEQKNKK 280
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ A+IF ++ A L L+ G S ++ +L Q R+ +F
Sbjct: 281 LIELLDSLDFNQ-AVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNF 339
Query: 214 LFDYLIATD 222
++AT+
Sbjct: 340 ESRIMVATN 348
Score = 128 (50.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 314
FG RGID + V+ VIN++M ++A Y+HR+GR GR G ++S V E + E+++S
Sbjct: 350 FG--RGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSKEDPVLEQVQS 407
Query: 315 -FV 316
FV
Sbjct: 408 KFV 410
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 165 (63.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 61/221 (27%), Positives = 107/221 (48%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL G ++K V L +P L ++IATPG + L + QS +K
Sbjct: 294 ELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG---RLLDI-IKQSSVELCGIK 349
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY-ILTL 123
I+V+DEAD +L G++ + + +P Q +L+SAT + +++L +LHNP I+T
Sbjct: 350 IVVVDEADTMLKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLHNPVRIIT- 408
Query: 124 PEVGDVKDEVIP-KNVQQFWISCSERDKXXXXXXXXXXXXVQKK-ALIFTNTIDMAFRLK 181
G+ K+ +P +V+Q + E K + K L+F + A L
Sbjct: 409 ---GE-KN--LPCSSVRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLS 462
Query: 182 LFLEKF-GIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT 221
++K G+KS +++E Q R +IL+ G ++ +++T
Sbjct: 463 EAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEVVVST 503
Score = 118 (46.6 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 256 GVV-RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
GV+ RG+D +V V+NF+MP + YVH++GR GR G +++ ++ + ++F +I
Sbjct: 504 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDI 561
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 169 (64.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 52/189 (27%), Positives = 91/189 (48%)
Query: 37 IVIATPGC-MPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C ++ +++ VLDEAD+++ + G+ D + +P C
Sbjct: 218 IVIGTPGTVLDWCFKRKLIDLTK----IRVFVLDEADVMIDTQGFSDQSIRIQRALPSEC 273
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKXXX 153
Q LL SAT V + + I+ +P ++ L K+E+ N++Q+++ C R DK
Sbjct: 274 QMLLFSATFEDSVWQFAERIIPDPNVIKLR-----KEELTLNNIRQYYVLCENRKDKYQA 328
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ + A+IF T A L + + + G + ++L+ EL R I++ F G
Sbjct: 329 LCNIYGGITIGQ-AIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDG 387
Query: 214 LFDYLIATD 222
LI T+
Sbjct: 388 KEKVLITTN 396
Score = 110 (43.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLVSPDE----MKI 308
RGID K V V+NF++P N + Y+HRIGRTGR G + +++ D+ MKI
Sbjct: 400 RGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKI 459
Query: 309 FEEIKSFVGDDENEDSNII 327
+ S + + ED + I
Sbjct: 460 QDHFNSSIKQLDPEDMDEI 478
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 148 (57.2 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 56/222 (25%), Positives = 108/222 (48%)
Query: 16 VQLTSSMPASDLRAALAGPPDI---VIATPGCMPKC-LSTGVLQS-------KSF-SDSL 63
VQ+ S+ A+ + PP + V + C C LS +LQS +S + ++
Sbjct: 121 VQIQKSLLAT---GEVPVPPPVKCTVSSWEQCRLACFLSLFILQSEIDMIRRRSLRTRAI 177
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K+LVLDEAD +L+ G+++ + + +P Q +L+SAT ++ ++ + +P + +
Sbjct: 178 KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 237
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNT---IDMAFRL 180
+DE+ + ++QF+++ + +A+IF NT +D
Sbjct: 238 K-----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE- 291
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
K+ F + S ++ ++PQ R I++EF +G LI+TD
Sbjct: 292 KMREANFTVSS--MHGDMPQKERESIMKEFRSGASRVLISTD 331
Score = 129 (50.5 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D V +IN+++P N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 335 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 394
Query: 319 DENE 322
+E
Sbjct: 395 QIDE 398
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 144 (55.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 60/189 (31%), Positives = 84/189 (44%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL-DEADLLLSYGYEDDL-KALSAVIPRG 93
DIVIATPG + LQ +F + I L +EAD +L G+E + K L V P
Sbjct: 365 DIVIATPGRLND------LQMNNFINLKSITYLANEADRMLDMGFEPQIMKILIDVRPDR 418
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXX 153
Q ++MSAT V +L K L NP I+ VG + D V+Q I +E +K
Sbjct: 419 -QTVMMSATWPDGVRRLAKSYLRNPMIVY---VGTL-DLAAVNTVEQKVIVINEEEKKAF 473
Query: 154 XXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ KA+IF A + L G+ L+ + Q R L++F G
Sbjct: 474 MENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKG 533
Query: 214 LFDYLIATD 222
L+ATD
Sbjct: 534 KVRILVATD 542
Score = 139 (54.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 37/134 (27%), Positives = 68/134 (50%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+++Q D +D K K + + ++ RG+D ++ V NF+ P+N YVHR+GR
Sbjct: 517 DREQCDREQALDDFKKGK-VRILVATDLAS-RGLDVHDITHVFNFDFPRNIEEYVHRVGR 574
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
TGRA TG +V+L++ + K E+ + + + + P L++ + RY+
Sbjct: 575 TGRAGRTGKAVTLITKKDWKAASELIDIL-----QRAKQVVPDELISM----AERYKQHQ 625
Query: 348 VAKSVTKIAVRESR 361
+ K + K +R R
Sbjct: 626 IRKEMEKDILRPQR 639
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 150 (57.9 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 53/190 (27%), Positives = 87/190 (45%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA---VIPR 92
D+++ATPG + L G + S ++ +K LVLDEAD +L G+E ++ + + P
Sbjct: 277 DLLVATPGRLNDLLERGKI---SLAN-VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPV 332
Query: 93 G-CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKX 151
G Q L+ SAT +D+ L + L + L++ VG + N+ Q + +DK
Sbjct: 333 GERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSE-----NITQKVLYVENQDKK 387
Query: 152 XXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
LIF T MA +L FL ++ ++ + Q+ R L F
Sbjct: 388 SALLDLLSAST-DGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFR 446
Query: 212 AGLFDYLIAT 221
+G L+AT
Sbjct: 447 SGAATLLVAT 456
Score = 131 (51.2 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D NV VIN+++P + YVHRIGRTGRA NTG + + + + I + + + +
Sbjct: 461 RGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTE 520
Query: 319 DENE 322
E
Sbjct: 521 ANQE 524
Score = 44 (20.5 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
I RGC L+ + +D+ + K+ L N L L E + D
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLD 313
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 146 (56.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 50/189 (26%), Positives = 80/189 (42%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 314 LLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 369
Query: 94 CQCLLM-SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
+ +M SAT ++ L + L L + VG + + K V W+ + DK
Sbjct: 370 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WVE--DLDKRS 424
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL G ++ + Q R L +F +
Sbjct: 425 FLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 484
Query: 213 GLFDYLIAT 221
G L+AT
Sbjct: 485 GKSPILVAT 493
Score = 136 (52.9 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++ Q D + +S K P L + RG+D NV VINF++P + YVHRIGR
Sbjct: 469 DRSQRDREEALHQFRSGKSPI--LVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 526
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
TGR N G + S + M I +++ + + + E
Sbjct: 527 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 561
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 146 (56.5 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 50/189 (26%), Positives = 80/189 (42%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 317 LLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 372
Query: 94 CQCLLM-SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
+ +M SAT ++ L + L L + VG + + K V W+ + DK
Sbjct: 373 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WVE--DLDKRS 427
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL G ++ + Q R L +F +
Sbjct: 428 FLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 487
Query: 213 GLFDYLIAT 221
G L+AT
Sbjct: 488 GKSPILVAT 496
Score = 136 (52.9 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++ Q D + +S K P L + RG+D NV VINF++P + YVHRIGR
Sbjct: 472 DRSQRDREEALHQFRSGKSPI--LVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
TGR N G + S + M I +++ + + + E
Sbjct: 530 TGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQE 564
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 155 (59.6 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 50/189 (26%), Positives = 81/189 (42%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 367 LLVATPGRLVDMMERG----KIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 422
Query: 94 C-QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q ++ SAT ++ L + L L + VG + + K V W+ E DK
Sbjct: 423 SRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVV---WVE--ENDKRS 477
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL + G ++ + Q R L +F +
Sbjct: 478 FLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRS 537
Query: 213 GLFDYLIAT 221
G ++AT
Sbjct: 538 GRCPIMVAT 546
Score = 127 (49.8 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RG+D NV VINF++P + YVHRIGRTGR N G + S + I +++ + +
Sbjct: 551 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVE 610
Query: 319 DENE 322
+ E
Sbjct: 611 AKQE 614
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 152 (58.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 51/189 (26%), Positives = 80/189 (42%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 319 LLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKG 374
Query: 94 CQCLLM-SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
+ +M SAT ++ L + L L + VG + + K V W+ E DK
Sbjct: 375 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WVE--EADKRS 429
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL G ++ + Q R L +F +
Sbjct: 430 FLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 489
Query: 213 GLFDYLIAT 221
G L+AT
Sbjct: 490 GKSPILVAT 498
Score = 128 (50.1 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++ Q D + +S K P L + RG+D NV VINF++P + YVHRIGR
Sbjct: 474 DRSQRDREEALHQFRSGKSPI--LVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGR 531
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
TGR N G + S + + I +++ + + + E
Sbjct: 532 TGRVGNLGLATSFFNERNINISKDLLDLLVEAKQE 566
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 173 (66.0 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 59/199 (29%), Positives = 94/199 (47%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYED---DLKAL 86
L+ P +VIATPG + L + S +FS ++ LV+DEAD LL G D DL+A+
Sbjct: 117 LSRKPHVVIATPGRLADHLRS----SNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAI 172
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 146
A +P Q LL SAT + + +L+ L + P+ V+ + + Q ++
Sbjct: 173 LAAVPARRQTLLFSATLTDTLRELQSLATNQPFFWEAQ--APVRTV---EQLDQRYLLVP 227
Query: 147 ERDKXXXXXXXXXXXXVQKK---ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
E+ K + + +IFTNT L + L KF + L++ + Q R
Sbjct: 228 EKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKER 287
Query: 204 LHILEEFNAGLFDYLIATD 222
L +F + ++ LIATD
Sbjct: 288 FAALAKFKSSIYRILIATD 306
Score = 101 (40.6 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF----EEIKS 314
RG+D V VIN P Y+HR+GRT RA G +++LV+ ++ + E+IK
Sbjct: 310 RGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHAIEEQIKK 369
Query: 315 FVGDDENEDSNII 327
+ + E++ ++
Sbjct: 370 KLEEFSVEEAEVL 382
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 150 (57.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 51/189 (26%), Positives = 80/189 (42%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 318 LLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 373
Query: 94 CQCLLM-SATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
+ +M SAT ++ L + L L + VG + + K V W+ E DK
Sbjct: 374 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WVE--ESDKRS 428
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL G ++ + Q R L +F +
Sbjct: 429 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 488
Query: 213 GLFDYLIAT 221
G L+AT
Sbjct: 489 GKSPILVAT 497
Score = 130 (50.8 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++ Q D + +S K P L + RG+D NV VINF++P + YVHRIGR
Sbjct: 473 DRSQRDREEALHQFRSGKSPI--LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 530
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
TGR N G + S + + I +++ + + + E
Sbjct: 531 TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 565
WARNING: HSPs involving 535 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.373 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 486 459 0.00095 118 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 785
No. of states in DFA: 603 (64 KB)
Total size of DFA: 243 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.36u 0.11s 41.47t Elapsed: 00:00:02
Total cpu time: 41.40u 0.11s 41.51t Elapsed: 00:00:02
Start: Tue May 21 06:49:44 2013 End: Tue May 21 06:49:46 2013
WARNINGS ISSUED: 2